WO2018204830A2 - Inhibiting senescent processes in beta cells for the prevention of type 1 diabetes - Google Patents
Inhibiting senescent processes in beta cells for the prevention of type 1 diabetes Download PDFInfo
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- WO2018204830A2 WO2018204830A2 PCT/US2018/031161 US2018031161W WO2018204830A2 WO 2018204830 A2 WO2018204830 A2 WO 2018204830A2 US 2018031161 W US2018031161 W US 2018031161W WO 2018204830 A2 WO2018204830 A2 WO 2018204830A2
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Definitions
- Replicative senescence is a pathway that protects against unrestricted cell proliferation. Aging cells accumulate DNA-damaging insults which create the risk of genetic instability and cancer. In response to such DNA damage, some cells undergo apoptosis. Others enter a state called cellular senescence, wherein the cell cycle is arrested to inhibit the proliferation of damaged cells. Individuals generally accumulate such senescent cells with age.
- SASP cells secrete a number of inflammatory signal molecules, including cytokines, chemokines, and other factors. This SASP secretome may profoundly affect neighboring, non-senescent cells, impairing their function and facilitating their transition to senescent cells as well.
- senolytic agents agents which selectively kill senescent cells
- senolytics to treat diabetes
- US20170216286 "Killing senescent cells and treating senescence-associated conditions using a src inhibitor and a f!avonoid," by Kirk!and et a!.
- the administration of senolytic agents to treat diabetes is contemplated in PCT International Patent Application Number WO2017008060, "Compositions and methods for treating senescence-associated diseases and disorders," by Lopez-Dominguez.
- Senolytic agents have been proposed for the treatment of Type II diabetes [for example, as described in Palmer et al., 2015, "Cellular Senescence in Type 2 Diabetes: A Therapeutic Opportunity,” Diabetes 64(7): 2289-2298].
- Type II diabetes senescence is triggered in pancreatic islet ⁇ cells by unknown mechanisms, arresting the cell cycle.
- Type I Diabetes comprises a different pathology.
- pancreatic ⁇ cells are attacked by autoimmune processes, with invasion of the islets by inflammatory cells in a condition called insulitis. Over time, this sustained autoimmune process results in the loss of large numbers of ⁇ cells and dysregulation of glucose metabolism [for example, as described in Cnop et al., 2005, "Mechanisms of Pancreatic -Cell Death in Type 1 and Type 2 Diabetes-Many Differences, Few
- the inventors of the present disclosure have determined that genotoxic stresses present in the development of Type 1 diabetes create a stress-induced senescent phenotype.
- the inventors of the present disclosure have also determined that this stress response, if sustained and unresolved, leads to the manifestation of the SASP condition in beta cells and that this has pathological effects on surrounding, non- senescent cells and islet function.
- the inventors of the present disclosure have further demonstrated that administration of senolytic agents can disrupt the transition from stress-response senescent phenotype to SASP phenotype, preventing the onset or reducing the severity of Type 1 diabetes.
- the inventors of the present disclosure have further demonstrated that the selective removal of senescent beta cells comprises an effective treatment for Type 1 diabetes. Furthermore, the inventors of the present disclosure have determined that immune infiltration of islet cells can be ameliorated by the administration of senolytic agents.
- the scope of the invention encompasses methods of preventing Type 1 diabetes by administration of a senolytic agent to a subject at risk of Type 1 diabetes.
- a senolytic agent to a subject at risk of Type 1 diabetes.
- Various novel criteria for identifying subjects as at-risk are disclosed herein.
- the scope of the invention encompasses a method of treating Type 1 diabetes in a subject by the administration of a senolytic agents.
- the scope of the invention encompasses the administration of a senolytic agent to disrupt immune infiltration of islet beta cells.
- the scope of the invention encompasses a method of
- the invention comprises a senolytic agent for use in the prevention of Type 1 diabetes.
- the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for the prevention of Type 1 diabetes.
- Type 1 diabetes refers to Diabetes mellitus, Type 1 , as known in the art. This form of diabetes is caused by autoimmune destruction or impairment of beta cells, manifesting in reduced insulin production, and dysregulated glucose metabolism.
- beta cell refers to pancreatic islet beta cells, as known in the art. For example, beta cells may be identified by their non-immune status (e.g CD45 negative) and markers of beta cell identity such as Ins1 and Ins2.
- the "beta cell environment” or “islet environment” refers to pancreatic regions harboring beta cells, including islets, and the surrounding tissues and interstitial fluids to which beta cells are exposed.
- prevention of diabetes means any inhibition of the progression from non-overt diabetic status to overt Type 1 diabetic status. Prevention may encompass the slowing, arrest, delay, amelioration of symptoms, or other inhibition of diabetic progression from a non-overt diabetic status to diabetic status. Overt diabetes is characterized by elevated fasting blood glucose concentration (e.g. greater than 130 mg/dl when fasting) and other classical symptoms such as insufficient insulin
- Type 1 diabetes production, hyperglycemia, diabetic ketoacidosis, and other symptoms of Type 1 diabetes.
- the invention encompasses a method of reducing the number of senescent beta cells in a subject at risk for Type 1 diabetes, by the administration of a senolytic agent.
- a senolytic agent As demonstrated herein, the genotoxic stress associated with the onset of Type 1 is present in beta cells prior to the onset of diabetes and precedes the acquisition of SASP.
- Senolytic agents destroy cells that are undergoing the transition to the senescent state and cells which have attained a senescent state, preventing their paracrine pro-senescent effects on neighboring, non- senescent cells.
- the method may achieve a reduction in the absolute number of senescent beta cells or a reduction in the proportion of senescent beta cells to non- senescent beta cells.
- the treatment comprises reducing the proportion of senescent beta cells to less than 25% of total beta cells, less than 20% of total beta cells, less than 15% of total beta cells, less than 10% of total beta cells, or less than 5% of total beta cells.
- the invention comprises a senolytic agent for use in reducing the abundance of senescent beta cells in a subject at risk of Type 1 diabetes.
- the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for reducing abundance of senescent beta cells in a subject at risk of Type 1 diabetes.
- the scope of the invention encompasses reducing the abundance of SASP beta cells in a subject, for example, a subject at risk for Type 1 diabetes, by administration of a senolytic agent.
- a SASP inflammatory condition is acquired by a substantial number of beta cells in the progression of Type 1 diabetes and such phenotype has deleterious effects on surrounding, non-senescent beta cells.
- the scope of the invention encompasses methods of reducing the abundance of beta cells having SASP phenotype, by removal of senescent cells with the SASP phenotype. The method may achieve a reduction in the absolute number of SASP beta cells or a reduction in the proportion of SASP cells to non-senescent beta cells.
- the treatment comprises reducing the proportion of SASP beta cells to less than 25% of total beta cells, less than 20% of total beta cells, less than 15% of total beta cells, less than 10% of total beta cells, less than 5% of total beta cells, or less than 1 % of total beta cells.
- SASP beta cells will be defined as those expression or exhibiting any known biomarkers of the SASP condition, including the secretion of pro-inflammatory signaling molecules.
- exemplary SASP biomarkers include drivers of SASP such as
- bromodomain and extra-terminal motif (BET) proteins e.g. BRD2, BRd3, and BRD4
- BET bromodomain and extra-terminal motif
- p38MAPK p38MAPK
- JAK JAK
- NF- ⁇ NF- ⁇
- C/EBP CCAAT-enhancer-binding proteins
- SASP incidence may also be assessed by the presence of secreted SASP factors in the islet cell environment, for example, secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases.
- secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP
- Bcl-2 and other antiapoptotic proteins are upregulated in the SASP condition. Accordingly, senolytic compounds that target Bcl-2 family members will, generally, remove SASP beta cells while sparing non-SASP senescent cells.
- the methods of the invention encompass the administration of a senolytic agent that preferentially or selectively kills SASP beta cells, for example, inhibitors of BCI-2 family members.
- the invention comprises a senolytic agent for use in reducing the abundance of SASP beta cells of a subject, for example, a subject at risk for Type 1 diabetes.
- a senolytic agent for use in reducing the abundance of SASP beta cells of a subject, for example, a subject at risk for Type 1 diabetes.
- a senolytic agent in the manufacture of a medicament for reducing the abundance of SASP beta cells of a subject, for example, a subject at risk for Type 1 diabetes.
- the scope of the invention encompasses a method of reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes, by the administration of a senolytic agent.
- a senolytic agent for example, beta cells in the vicinity of senescent cells having a SASP condition are exposed to inflammatory and/or pro-senescent factors secreted by such SASP beta cells, with deleterious effects.
- the method of the invention encompasses the reduction of such factors in the environment of healthy beta cells by selectively removing senescent cells.
- the one or more SASP factors may be selected from the group consisting of secreted factors such as Serpinel , G-CSF, Ccl2, Igfpb3, IL6, IL1 , IL8, Fnlb, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-2, MMP-3, MMP-9, MMP-10, MMP-12 and serine proteases.
- secreted factors such as Serpinel , G-CSF, Ccl2, Igfpb3, IL6, IL1 , IL8, Fnlb, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-2, MMP-3, MMP
- the invention comprises a senolytic agent for use in reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes.
- the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes.
- the scope of the invention encompasses a method of inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes, by the administration of a senolytic agent.
- Immune infiltration is a major driver of insulitis and the progression to Type 1 diabetes and is promoted by senescent and SASP cells.
- administration of senolytic agents inhibits chemotactic signaling by senescent cells that attracts monocytes to islets.
- the invention comprises the administration of a senolytic agent to reduce the abundance of one or more immune cell types in the beta cell environment.
- the one or more immune cell types comprises T lymphocytes, B lymphocytes, dendritic cells, or macrophages, including monocytes.
- the invention comprises a senolytic agent for use in inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes.
- the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes
- the methods of the invention encompass the administration of a senolytic agent.
- the senolytic agent may comprise any composition of matter that facilitates or causes the selective death of cells that have acquired a senescent phenotype.
- reference to "a senolytic agent” encompasses the administration of a pharmaceutically effective amount of one or more senolytic agents.
- Such pharmaceutically effective dosage can be determined by one of skill in the art. For example, dosages of 5-500 mg/kg, for example, 1 00 mg/kg, administered 1 -7 days per week, for example 3 days per week.
- compositions may be formulated with any number of excipients, carriers, delivery vehicles, etc., as known in the art. It will be understood that the methods described herein encompass various delivery methods, including systemic delivery as well as localized delivery to the pancreas, including oral
- the senolytic agent will comprise an agent which preferentially or selectively kills SASP beta cells.
- the agent may comprise an inhibitor of one or more BCL-2 anti-apoptotic protein family members, for example an inhibitor of Bcl-2, Bcl-xL, Bcl-w or Mcl-1 , which compositions preferentially trigger apoptosis in SASP beta cells.
- the senolytic agent is a BH3 mimetic, which can trigger apoptosis with some specificity in cells that have high levels of Bcl-2 or the related family members.
- the senolytic agent is ABT-737, which targets Bcl-2 and family members Bcl-xL and Bcl-w. In one embodiment, the senolytic agent is ABT-1 99, which selectively targets Bcl-2. In one embodiment, the senolytic agent is Maritoclax, which targets Mcl-1 . Another the senolytic agent which targets Bcl-2 family proteins is navitoclax (ABT263).
- senolytic agents include: dasatinib; piperlongumin; MDM2 inhibitors; Akt inhibitors; WEHI-539; A1 1 55463,; A1331 852, fisetin; Nutlin-3a; RG-1 1 72, quercetin, enzastaurin, droxinostat, and EF-24 (1 -(3,5-di-tert-butyl-4- hydroxyphenyl)-2-(3-ethyl-2- imino-2,3-dihydro-1 H-benzimidazol-1 -yl)ethanone hydrochloride).
- the senolytic agent is an antibody, aptamer, targeted ubiquination construct, or other biological molecule, for example, comprising a peptide or nucleic acid, which selectively binds to antigens present on senescent and wherein such binding mediates, directly or indirectly, the death or elimination of such senescent cell or effector of senescence, for example by antibody dependent cell mediated cytotoxicity or similar processes.
- Subjects at Risk of Type 1 Diabetes may be applied to any animal subject, for example, human subjects or non-human animal subjects such as test animals or veterinary patients.
- the subject may be a subject that is at risk for Type 1 diabetes.
- subjects that progress to Type 1 diabetes undergo various senescence-related processes in beta cells that drive progression of the disease, prior to the onset of overt Type 1 diabetes. Accordingly, such subjects are amenable to the several methods of the invention which disrupt these senescent processes and the resulting progression to overt Type 1 diabetes.
- the subject at risk for Type 1 diabetes is a subject considered at risk of Type 1 diabetes according to known or classical classifications. In one
- the subject is deemed at-risk by the presence of one or more Type 1 diabetes risk factors, including, for example, elevated blood glucose, family history, genetic biomarkers of Type 1 diabetes risk, excessive thirst, frequent urination, or other known indicators of Type 1 diabetes risk.
- Type 1 diabetes risk factors including, for example, elevated blood glucose, family history, genetic biomarkers of Type 1 diabetes risk, excessive thirst, frequent urination, or other known indicators of Type 1 diabetes risk.
- the subject at risk for Type 1 diabetes is a subject that has been diagnosed as prediabetic, for example as having impaired fasting glucose or impaired glucose tolerance.
- the subject at risk for Type 1 diabetes is a subject that has been diagnosed as having "chemical diabetes” or the latent stage of Type 1 diabetes, for example, as characterized by abnormal glucose tolerance.
- the subject at risk for Type 1 diabetes is a subject that has been diagnosed with subclinical diabetes, for example, as characterized by abnormal glucose metabolism under stress.
- the subject at risk for Type 1 diabetes is a subject found positive for one or more diabetes autoantibodies.
- exemplary autoantibodies include islet cell autoantibodies (ICA), antibodies to insulin (IAA), glutamic acid decarboxylase (GAA or GAD) and protein tyrosine phosphatase (IA2 or ICA512).
- the inventor of the present disclosure by elucidating the role of senescent processes in the progression to Type 1 diabetes, has advantageously identified novel criteria for identifying subjects that are at risk of developing Type 1 diabetes.
- the subject at risk of Type 1 diabetes comprises a subject that has incidence of genotoxic stress in beta cells.
- the genotoxic stress may be assessed by the presence of one or more biomarkers selected from the group consisting of bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF- ⁇ , and CCAAT-enhancer-binding proteins (C/EBP), DNA damage repair proteins 53BP1 , NBS1 , MDC1 ; DNA damage kinases ATM and ATR; and CHK1 and CHK2 kinases.
- BET bromodomain and extra-terminal motif
- C/EBP CCAAT-enhancer-binding proteins
- the subject at risk of Type 1 diabetes comprises a subject that has an elevated abundance of senescent beta cells.
- senescent beta cells may be identified by biomarkers of senescence such as nuclear p21 ; nuclear p16; BET proteins such as BRD2, BRD3, and BRD4; ⁇ - ⁇ 2 ⁇ (a phosphorylated form of the histone variant H2AX), CDC25 phosphatases; p53, retinoblastoma tumor suppressor; senescence-associated ⁇ -galactosidase activity, senescence-associated
- An elevated abundance of senescent cells may be assessed as any significant accumulation of senescent cells compared to appropriate controls (e.g. age matched healthy subject), for example, the significant abundance being up to 1 % senescent cells to (as a fraction of total beta cells), up to 2% senescent cells, up to 5% senescent cells, up to 10% senescent cells, or great thanl 0% senescent cells.
- the subject at risk of Type 1 diabetes is a subject that has an inflammatory biomarker signature associated with the risk of Type 1 diabetes onset.
- the inflammatory biomarker signature comprises one or more markers selected from the group consisting of CxcHO, Igfbp4, Serpingl and down- regulation of mature beta cell markers Ucn3 and lapp.
- the subject at risk of Type 1 diabetes comprises a subject that has incidence of SASP in beta cells.
- SASP biomarkers include drivers of SASP such as bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF- ⁇ , and CCAAT-enhancer-binding proteins (C/EBP).
- BET bromodomain and extra-terminal motif
- SASP incidence may also be assessed by the presence of secreted SASP factors in the islet cell environment, for example, secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases.
- secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP
- the inventor of the present disclosure has determined that the appearance of for one or more diabetes autoantibodies in a subject corresponds with the onset of SASP in beta cells. Accordingly, detection of one or more diabetes autoantibodies provides an indication that a subject will be amenable to the methods of the invention.
- Exemplary autoantibodies include islet cell autoantibodies (ICA), antibodies to insulin (IAA), glutamic acid decarboxylase (GAA or GAD) and protein tyrosine phosphatase (IA2 or ICA512).
- the scope of the invention encompasses methods of reducing the abundance of SASP beta cells or reducing the abundance of SASP factors in a subject at risk of Type 1 diabetes, wherein the subject at risk of Type 1 diabetes comprises a non-diabetic subject having one or more detectable types of diabetes autoantibodies.
- the subject at risk of Type 1 diabetes comprises a subject that has enhanced chemotactic signaling for the attraction of one or more immune cell types, with greater chemotactic signaling than observed in healthy cells.
- Immune cell types may include T lymphocytes, B lymphocytes, dendritic cells, or macrophages, including monocytes.
- a SASP factor is any species that drives the SASP phenotype or which is secreted in the manifestation of the SASP phenotype.
- SASP factors include, for example, drivers of SASP such as bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF- ⁇ , and CCAAT-enhancer-binding proteins (C/EBP).
- BET bromodomain and extra-terminal motif
- C/EBP CCAAT-enhancer-binding proteins
- SASP factors further include, for example secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases
- secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases
- the scope of the invention encompasses methods of inhibiting the deleterious effects of the SASP phenotype to prevent and treat Type 1 diabetes.
- Treatment of Type 1 diabetes encompasses any lessening or reversal of Type 1 diabetes symptoms or slowing or arresting the progression of the condition.
- SASP has been implicated in certain aspects of Type 2 diabetes
- the scope of the invention encompasses the prevention or treatment of Type 2 diabetes, encompassing any lessening or reversal of Type 2 diabetes symptoms or slowing or arresting the progression of the condition, by the inhibition of a SASP factor.
- the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF- ⁇ , and CCAAT-enhancer-binding proteins (C/EBP).
- BET extra-terminal motif
- C/EBP CCAAT-enhancer-binding proteins
- the BET inhibitor is selected from the group consisting of l-BET 762 (Glaxo Smith Kline), GSK525762 (Glaxo Smith Kline), OTX-015 (Merck), Ten-010 (Tensha pharmaceuticals), CPI-203 (Constellation Pharmaceuticals), CPI-0610 (Constellation Pharmaceuticals), RVX-208 (Resverlogix), LY294002, BMS-986158 (Bristol Myers Squibb), and PLX-51 107.
- the invention comprises a BET inhibitor for use in the prevention or treatment of Type 1 diabetes.
- the invention comprises the use of a BET inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes.
- the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a BET inhibitor.
- the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of bromodomain proteins.
- the bromodomain inhibitor is BI-2536 or TG-101348.
- the invention comprises a bromodomain inhibitor for use in the prevention or treatment of Type 1 diabetes.
- the invention comprises the use of a bromodomain inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes.
- the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a bromodomain protein inhibitor.
- the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of P38 MAPK.
- the P38 MAPK inhibitor is selected from a group consisting of VX-745, VX-702, RO-4402257, SCIO- 469, BIRB-796, SD-0006, PH-797804, AMG-548, LY2228820, SB-681323 and GW- 856553.
- the invention comprises a P38 MAPK inhibitor for use in the prevention or treatment of Type 1 diabetes.
- the invention comprises the use of a P38 MAPK inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes.
- the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of P38 MAPK inhibitor.
- the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of JAK.
- the JAK inhibitor is selected from the group consisting of roxolitnib, tofacitnib, olcacitnib, baricitnib, filgotinib, and lestauritnib.
- the invention comprises a JAK inhibitor for use in the prevention or treatment of Type 1 diabetes.
- the invention comprises the use of a JAK inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes.
- the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a JAK inhibitor.
- the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of NF- ⁇ signaling.
- the NF-KB signaling inhibitor is selected from the group consisting of disulfram, olmesartan, and dithiocarbamates.
- the invention comprises a NF- ⁇ signaling inhibitor for use in the prevention or treatment of Type 1 diabetes.
- the invention comprises the use of a NF- ⁇ signaling inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes.
- the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of an NF-KB inhibitor.
- the scope of the invention encompasses methods of preserving beta cells in subjects having diabetes by the administration of a senolytic agent.
- Diabetic subjects including subjects having Type 1 or Type 2 diabetes, have depleted numbers of healthy beta cells, which cells are lost by the ongoing underlying processes of these diabetic conditions. Removal of deleterious senescent cells will aid in the preservation of remaining healthy beta cells.
- the scope of the invention encompasses methods of preserving healthy beta cells in subjects having Type 1 or Type 2 diabetes by the administration of a senolytic agent. Preserving the number of healthy beta cells encompasses any treatment which prevents the death or incapacitation of beta cells in a treated subject, for example, in comparison to like untreated subjects.
- the invention encompasses a senolytic agent for use in preserving healthy beta cells in subjects having Type 1 or Type 2 diabetes.
- the scope of the invention encompasses methods of identifying subjects at risk of Type 1 diabetes.
- the risk of Type 1 diabetes may be based on the observation that the subject meets certain selected criteria.
- the subject may be considered at risk of diabetes based on a criteria selected from the group consisting of: has been diagnosed as prediabetic; has been diagnosed as having subclinical diabetes; has been diagnosed as having chemical diabetes; has autoantibodies that target beta cells; has insulitis; has ongoing stress response processes in beta cells; has an inflammatory signature in beta cells; has a significant abundance of senescent beta cells; SASP condition is present in beta cells; has secreted SASP factors in the islet cell environment; has chemotactic signaling that promotes the infiltration of immune cells to the islet cell environment.
- Each such criteria may be established by the presence of one or more biomarkers, for example, as described in the preceding section.
- the scope of the invention encompasses a method of ascertaining whether a subject is at risk of Type 1 diabetes, comprising the following process: a sample is obtained from the subject; the presence and/or abundance of one or more biomarkers associated with a selected at-risk criteria is assessed in the sample; and the subject is deemed to be at risk of Type 1 diabetes status if the sample is positive for the one or more biomarkers associated with the selected at-risk criteria.
- the sample may comprise any sample appropriate for assessing the selected biomarkers.
- the sample may be any material withdrawn from the patient wherein the selected marker of beta cell senescent processes is measureable.
- the biomarker is present systemically and may be assessed in serum, urine, whole blood, saliva, etc.
- the sample is a bone marrow derived sample, including any cells, fluids, or other materials present in bone marrow.
- the sample is interstitial fluid from or from around the vicinity of the pancreas.
- the target biomarkers may be measured by any suitable means known in the art, for example by fluorescent antibody analysis, protein expression analysis, enzymatic assays, etc.
- Engineered Cells encompasses engineered beta cells, wherein the engineered cells comprise one or more genetic modifications which inhibit the onset or manifestation of senescent processes, including the acquisition of the SASP phonotype.
- the one or more genetic modifications may comprise the attenuation of senescence-associated genes, the attenuation of SASP-drivers, or the attenuation of secreted SASP factor genes.
- Attenuation may comprise, for example, gene silencing, mutation, or deletion.
- the engineered cells of the invention may be used in the context of cellular therapy, for example in replacing or augmenting senescent beta cells with cells that are resistant to senescence or impaired in their ability to become senescent.
- implanted beta cells for the treatment of Type I diabetes is known.
- islet cells including beta cells and beta cell precursors have been implanted into patients, for example, to the pancreas.
- Implanted beta cells have also previously been implanted in the form of an artificial pancreas-type organ, for example, being implanted
- the methods of the invention encompass the transplantation of senescence-resistant or senescence-impaired engineered beta cells or beta cell precursors to the body of the subject.
- Beta cells acquire SASP during the progression of T1D in NOD mice.
- differentially expressed RNA transcripts in islets from female euglycemic NOD mice were compared at 8 and 14 weeks by single-cell RNA
- Beta cells (identified by high expression of Ins1 and Ins2) from 8 week and 14 week islets were clustered separately. Two transcriptomically-distinct clusters of beta cells were unique to 14-week beta cells.
- CxcHO a distinct inflammatory gene signature
- Igfbp4 a distinct inflammatory gene signature
- Serpingl and down-regulation of mature beta cell markers such as Ucn3 and lapp.
- Expression of Cdknia and inflammatory markers CxcHO, Serpingl and Igfbp4 were all increased on a global level in the beta cells of 14-week NOD mice compared with the 8-week mice.
- a two-dimensional (force-directed) nearest neighbor graph embedding typically used to visualize continuous gene-expression topologies in high-dimensions, placed beta cells from these two 14-week-specific clusters along a common trajectory that progressed from cellular stress response to an inflammatory state.
- Immunohistochemistry was used to assess expression of CDKIs, Cdkn2a (p16) and Cdkni a (p21 ) and Ser139 phosphorylated Histone H2A.X ( ⁇ - ⁇ 2 ⁇ . ⁇ ) as a measure of DNA damage.
- the expression of p16 increased gradually during aging and accumulated in beta cells after 6 months of age, consistent with the onset of age-related senescence in beta cells.
- Cdkni a was not detected in islets at any age.
- Cdkn2a was already highly expressed in insulin- positive beta cells at 14-weeks of age.
- islets from 14-week old NOD mice showed increased expression of Cdkni a and elevated levels of ⁇ - ⁇ 2 ⁇ . ⁇ relative to 8- week mice.
- the immunohistochemistry analysis is consistent with the scRNA-seq data in that during the progression of towards T1 D in NOD mice beta cells exhibit features of stress response senescence.
- CM conditioned media
- Example 2 Beta cell stress response senescence and SASP in human T1D.
- SA-Pgal activity a classical biomarker for senescent cells was assessed on pancreas sections from nondiabetic, auto-antibody positive (high risk for T1 D, but no overt disease) and recent onset ( ⁇ 2 years) adolescent and young adult T1 D donors.
- SA-Pgal activity in islet cells is low in adolescents and young adults but gradually increases with age.
- SA-Pgal activity was dramatically elevated in the islets of T1 D donors relative to similarly aged nondiabetic and autoantibody-positive donors.
- CDKN2A expression was low or absent in young children donor islets (age 2), but was increased in young adult (20-25) and was highest in geriatric donors (>70 years old), consistent with age-related beta cell senescence, while CDKN1 A was not detectable in any human samples throughout this age range.
- autoab+ and T1 D donors had dramatically increased expression of these senescence markers in beta cells as compared with nondiabetic donors.
- SASP markers, IL-6, SERPINE1 , IL-8 and MMP9 were stained for in the same cohort. These SASP markers were clearly increased in the beta cells of autoab+ and T1 D donors relative to nondiabetic donors.
- bleomycin treatment induced expression of CDKN1A and CDKN2A, consistent with the induction of senescence in a subset of the islet cells.
- Luminex assays on the CM from the bleo-treated islets showed increased levels of SASP factors IL-6, IL-8, IL-1 ⁇ and TNFa compared with control islet CM.
- Example 3 Non-cell autonomous activities of islet SASP.
- SASP SASP of beta cells had non-cell autonomous effects resembling SASP
- the ability of secreted factors from CD45-depleted islet cells of 14 wk NOD mice to induce senescence in NOD mouse embryonic fibroblasts (MEFs) and in 8 week NOD islets (when senescence is not observed) was assessed.
- MEFs NOD mouse embryonic fibroblasts
- SCM senescent MEF CM control
- SCM senescent MEF CM control
- the NCM was also capable of increasing the proportion of SA-Pgal + cells in the cultured islets from 8 week old NOD mice.
- senescence was induced with bleomycin or etoposide in human BJ fibroblasts or WI-38 fibroblasts, respectively and 5 days later CM was collected.
- ELISA confirmed that senescent BJ cells secreted high levels of IL-6, consistent with expression of SASP.
- the CM from senescent BJ cells could induce paracrine senescence in WI-38 primary lung fibroblasts, and vice-versa, confirming that the senescent fibroblast CM had paracrine senescence activity.
- CM from NOD islet cells and human islets were tested using the human THP-1 cell line.
- NCM was capable of stimulating chemotaxis 3-fold over the SFM control, similarly to the positive control, serum-free media conditioned with recombinant mouse CCL2.
- Example 4 BH3 mimetics preferentially eliminate SASP beta cells in NOD mice.
- SASP cells like tumor cells, have been shown to upregulate members of the anti-apoptotic Bcl-2 family of proteins, immunostaining was used to assess the levels of Bcl-2 in islets of NOD mice.
- Bcl-2 was overexpressed in islets with SASP beta cells indicating that these cells were resistant to apoptosis and that SASP beta cells would be sensitive to drugs that interfered with the interactions of anti- and pro- apoptotic members.
- the Bcl-2 family contains a hydrophobic groove called the BH3 domain and 'BH3 mimetics' are pharmacological compounds that mimic the binding of the BH3-only initiator proteins to the pro-survival members.
- the BH3 mimetics can trigger apoptosis with some specificity in cells that have high levels of Bcl- 2 or the related members.
- a number of small molecule inhibitors that target Bcl-2, Bcl- xL, Bcl-w or Mcl-1 proteins have been developed and some of them have been used to preferentially trigger apoptosis in senescent cells, both in vitro and in vivo.
- mice 10 week old euglycemic NOD/ShiltJ mice were given oral gavage of 100 mg/kg ABT-737 or vehicle (30% propylene glycol, 5% Tween- 80 and 65% D5W) for 3 consecutive days followed by a break for 4 days and then again treated for 3 days (a total of 6 doses), and then untreated for 2 weeks followed by three consecutive days of ABT-737 or vehicle treatment and then allowed to age without further treatment until 28 weeks of age.
- ABT-737 or vehicle 30% propylene glycol, 5% Tween- 80 and 65% D5W
- ABT-199 Same outline was followed for ABT-199, wherein 1 1 week old euglycemic NOD/ShiltJ mice were given ABT-199 or vehicle (60% phosphal 50 PG, 30% PEG 400 and 10% ethanol) by i.p injection every alternate day for 2 weeks and then RBG was measured until 28 weeks of age. did not have any effect.
- ABT-737 targeted SASP beta cells for apoptosis in vivo
- NOD mice were administered ABT-737 via oral gavage for 1 week followed by analysis of senescence and SASP markers by immunostaining. While over 50% of beta cells in islets from 12 week NOD mice expressed Cdkn2a, NOD mice administered ABT-737 showed a marked reduction in Cdkn2a. Quantification revealed that ABT-737 led to over 40% reduction in Cdkn2a + beta cells. The SASP marker Mmp2 was reduced to an even greater extent, as Mmp2 + beta cells were only rarely detected in ABT-737-treated mice relative to controls.
- Islets isolated from vehicle controls, ABT-737-treated mice or ABT-199-treated mice were depleted of CD45 + cells and CM was collected
- the CM from CD45-depleted islet cells of NOD mice treated with ABT-737 or ABT-199 showed lower levels of most of the SASP factors as compared to vehicle control mice. Consistent with decreased SASP, CM from CD45-depleted islet cells of ABT-737-treated mice also showed diminished paracrine senescence activity on NOD MEFs and on 8-week NOD islet cells.
- THP1 chemotaxis activity was reduced in the CM upon ABT-737 treatment of islets relative to vehicle-treated islets ex vivo.
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Abstract
The inventor of the present disclosure has advantageously elucidated the role of senescent processes in the development of Type 1 diabetes. Genotoxic stress responses, senescence, and acquisition of a SASP condition in beta cells are drivers that progress at-risk individuals to overt Type 1 diabetes. The administration of senolytic agents to at risk individuals selectively removes senescent cells and relieves beta cells from the factors which drive the development of overt Type 1 diabetes. Accordingly, Type 1 diabetes can be prevented in at-risk individuals by the administration of senolytic compositions. Additionally, given the major role of SASP in the development of Type 1 diabetes, the inhibition of SASP factors may be used to prevent Type 1 diabetes.
Description
Title: Inhibiting Senescent Processes in Beta Cells for the Prevention of Type 1 Diabetes
CROSS-REFERENCE TO RELATED APPLICATIONS: This application claims the benefit of priority to United States Provisional Application Serial Number 62/501 ,805 entitled "Inhibiting Senescent Processes in Beta Cells," filed May 5, 2017, the contents which are hereby incorporated by reference.
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT: Not Applicable.
[0001] Background of the Invention
[0002] Replicative senescence is a pathway that protects against unrestricted cell proliferation. Aging cells accumulate DNA-damaging insults which create the risk of genetic instability and cancer. In response to such DNA damage, some cells undergo apoptosis. Others enter a state called cellular senescence, wherein the cell cycle is arrested to inhibit the proliferation of damaged cells. Individuals generally accumulate such senescent cells with age.
[0003] In some cases, an extended state of unresolved stress causes the senescent cells to exhibit what is known as the SASP, for senescence-associated secretory phenotype. SASP cells secrete a number of inflammatory signal molecules, including cytokines, chemokines, and other factors. This SASP secretome may profoundly affect neighboring, non-senescent cells, impairing their function and facilitating their transition to senescent cells as well.
[0004] Accordingly, the use of senolytic agents, agents which selectively kill senescent cells, has been proposed for the treatment of various age-related diseases. Further, the use of senolytics to treat diabetes has been proposed, for example in United States
Patent Application Publication Number US20170216286, "Killing senescent cells and treating senescence-associated conditions using a src inhibitor and a f!avonoid," by Kirk!and et a!.. Likewise, the administration of senolytic agents to treat diabetes is contemplated in PCT International Patent Application Number WO2017008060, "Compositions and methods for treating senescence-associated diseases and disorders," by Lopez-Dominguez.
[0005] Senolytic agents have been proposed for the treatment of Type II diabetes [for example, as described in Palmer et al., 2015, "Cellular Senescence in Type 2 Diabetes: A Therapeutic Opportunity," Diabetes 64(7): 2289-2298]. In Type II diabetes, senescence is triggered in pancreatic islet β cells by unknown mechanisms, arresting the cell cycle. Cumulatively, this loss of self-replicating capability in β cells leads to a decrease in β cell numbers and islet mass, reducing the production of insulin, which in turn results in dysregulated glucose metabolism, hyperglycemia and diabetes [for example, as described in Tavana and Zhu, 201 1 , "Too many breaks (brakes): Pancreatic β -cell senescence leads to diabetes," Cell Cycle, 10:15, 2471 -2484.
[0006] In contrast, Type I Diabetes comprises a different pathology. In Type 1 diabetes, pancreatic β cells are attacked by autoimmune processes, with invasion of the islets by inflammatory cells in a condition called insulitis. Over time, this sustained autoimmune process results in the loss of large numbers of β cells and dysregulation of glucose metabolism [for example, as described in Cnop et al., 2005, "Mechanisms of Pancreatic -Cell Death in Type 1 and Type 2 Diabetes-Many Differences, Few
Similarities," Diabetes 54(supplement 2) S97-S107]. It is known that beta cells undergo age-related senescence, however the role of stress-induced senescence and
acquisition of SASP fate in beta cells has not been explored. Accordingly, there is a need in the art for an understanding of the role of senescent processes in Type I diabetes, and there remains a continued need for interventions to prevent and treat this condition.
[0007] Summary of the invention.
[0008] Provided herein are novel insights into the development and progression of Type 1 diabetes and the role of senescent processes therein. The inventors of the present disclosure have made the novel discovery that senescence is an integral process in the progression of Type 1 diabetes and that the SASP phenotype is a contributing pathological factor. The inventors of the present disclosure have further demonstrated that senolytic agents may be administered during critical early phases of Type 1 diabetes development and can be used to prevent the onset or reduce the severity of the disease.
[0009] The inventors of the present disclosure have determined that genotoxic stresses present in the development of Type 1 diabetes create a stress-induced senescent phenotype. The inventors of the present disclosure have also determined that this stress response, if sustained and unresolved, leads to the manifestation of the SASP condition in beta cells and that this has pathological effects on surrounding, non- senescent cells and islet function. The inventors of the present disclosure have further demonstrated that administration of senolytic agents can disrupt the transition from stress-response senescent phenotype to SASP phenotype, preventing the onset or reducing the severity of Type 1 diabetes. The inventors of the present disclosure have further demonstrated that the selective removal of senescent beta cells comprises an effective treatment for Type 1 diabetes. Furthermore, the inventors of the present disclosure have determined that immune infiltration of islet cells can be ameliorated by the administration of senolytic agents.
[0010] Accordingly, in one aspect, the scope of the invention encompasses methods of preventing Type 1 diabetes by administration of a senolytic agent to a subject at risk of Type 1 diabetes. Various novel criteria for identifying subjects as at-risk are disclosed herein.
[001 1 ] In another aspect, the scope of the invention encompasses a method of treating Type 1 diabetes in a subject by the administration of a senolytic agents. In another aspect, the scope of the invention encompasses the administration of a senolytic agent to disrupt immune infiltration of islet beta cells.
[0012] The various embodiments of the invention are described next. [0014] Brief Description of the Drawings
[0015] Fig. 1 . Fig. 1 depicts the abundance of apoptotic cells (Annexin V+) in the CD45" (endocrine enriched) fractions of NOD islets treated with ABT-737 for two weeks, compared to control vehicle-treated mice (n = 2 mice per group), error bars are s.d. *p < 0.05, two-tailed T-test.
[0016] Fig. 2. Fig. 2 depicts the incidence of diabetes in a cohort of NOD mice treated with ABT-737 (n = 10) or vehicle (n = 10).
[0017] Fig. 3. Fig. 3 depicts the incidence of diabetes in a cohort of NOD mice treated with ABT-199 (n = 5) or vehicle (n = 5).
[0018] Detailed Description of the Invention
[0019] Inhibition of Senescent Processes. The scope of the invention encompasses methods for inhibiting various pathological senescent processes in beta cells.
[0020] In a first aspect, the scope of the invention encompasses a method of
preventing Type 1 diabetes in a subject at risk therefore by the administration to the subject of a senolytic agent. In a related implementation, the invention comprises a senolytic agent for use in the prevention of Type 1 diabetes. In a related
implementation, the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for the prevention of Type 1 diabetes.
[0021 ] As used herein, Type 1 diabetes refers to Diabetes mellitus, Type 1 , as known in the art. This form of diabetes is caused by autoimmune destruction or impairment of beta cells, manifesting in reduced insulin production, and dysregulated glucose metabolism. As used herein, beta cell refers to pancreatic islet beta cells, as known in the art. For example, beta cells may be identified by their non-immune status (e.g
CD45 negative) and markers of beta cell identity such as Ins1 and Ins2. As used herein, the "beta cell environment" or "islet environment" refers to pancreatic regions harboring beta cells, including islets, and the surrounding tissues and interstitial fluids to which beta cells are exposed.
[0022] As used herein, "prevention of diabetes" means any inhibition of the progression from non-overt diabetic status to overt Type 1 diabetic status. Prevention may encompass the slowing, arrest, delay, amelioration of symptoms, or other inhibition of diabetic progression from a non-overt diabetic status to diabetic status. Overt diabetes is characterized by elevated fasting blood glucose concentration (e.g. greater than 130 mg/dl when fasting) and other classical symptoms such as insufficient insulin
production, hyperglycemia, diabetic ketoacidosis, and other symptoms of Type 1 diabetes.
[0023] In a second aspect, the invention encompasses a method of reducing the number of senescent beta cells in a subject at risk for Type 1 diabetes, by the administration of a senolytic agent. As demonstrated herein, the genotoxic stress associated with the onset of Type 1 is present in beta cells prior to the onset of diabetes and precedes the acquisition of SASP. Senolytic agents destroy cells that are undergoing the transition to the senescent state and cells which have attained a senescent state, preventing their paracrine pro-senescent effects on neighboring, non- senescent cells. The method may achieve a reduction in the absolute number of senescent beta cells or a reduction in the proportion of senescent beta cells to non- senescent beta cells. In one embodiment, the treatment comprises reducing the proportion of senescent beta cells to less than 25% of total beta cells, less than 20% of total beta cells, less than 15% of total beta cells, less than 10% of total beta cells, or less than 5% of total beta cells.
[0024] In a related implementation, the invention comprises a senolytic agent for use in reducing the abundance of senescent beta cells in a subject at risk of Type 1 diabetes. In a related implementation, the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for reducing abundance of
senescent beta cells in a subject at risk of Type 1 diabetes.
[0025] In a third aspect, the scope of the invention encompasses reducing the abundance of SASP beta cells in a subject, for example, a subject at risk for Type 1 diabetes, by administration of a senolytic agent. As demonstrated herein, a SASP inflammatory condition is acquired by a substantial number of beta cells in the progression of Type 1 diabetes and such phenotype has deleterious effects on surrounding, non-senescent beta cells. Accordingly, the scope of the invention encompasses methods of reducing the abundance of beta cells having SASP phenotype, by removal of senescent cells with the SASP phenotype. The method may achieve a reduction in the absolute number of SASP beta cells or a reduction in the proportion of SASP cells to non-senescent beta cells. In one embodiment, the treatment comprises reducing the proportion of SASP beta cells to less than 25% of total beta cells, less than 20% of total beta cells, less than 15% of total beta cells, less than 10% of total beta cells, less than 5% of total beta cells, or less than 1 % of total beta cells.
[0026] SASP beta cells will be defined as those expression or exhibiting any known biomarkers of the SASP condition, including the secretion of pro-inflammatory signaling molecules. Exemplary SASP biomarkers include drivers of SASP such as
bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF-κΒ, and CCAAT-enhancer-binding proteins (C/EBP). SASP incidence may also be assessed by the presence of secreted SASP factors in the islet cell environment, for example, secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases.
[0027] Bcl-2 and other antiapoptotic proteins are upregulated in the SASP condition. Accordingly, senolytic compounds that target Bcl-2 family members will, generally, remove SASP beta cells while sparing non-SASP senescent cells. In one
implementation, the methods of the invention encompass the administration of a senolytic agent that preferentially or selectively kills SASP beta cells, for example, inhibitors of BCI-2 family members.
[0028] In a related implementation, the invention comprises a senolytic agent for use in reducing the abundance of SASP beta cells of a subject, for example, a subject at risk for Type 1 diabetes. In a related implementation, the scope of the invention
encompasses the use of a senolytic agent in the manufacture of a medicament for reducing the abundance of SASP beta cells of a subject, for example, a subject at risk for Type 1 diabetes.
[0029] In a fourth aspect, the scope of the invention encompasses a method of reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes, by the administration of a senolytic agent. As demonstrated herein, beta cells in the vicinity of senescent cells having a SASP condition are exposed to inflammatory and/or pro-senescent factors secreted by such SASP beta cells, with deleterious effects. The method of the invention encompasses the reduction of such factors in the environment of healthy beta cells by selectively removing senescent cells. The one or more SASP factors may be selected from the group consisting of secreted factors such as Serpinel , G-CSF, Ccl2, Igfpb3, IL6, IL1 , IL8, Fnlb, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-2, MMP-3, MMP-9, MMP-10, MMP-12 and serine proteases.
[0030] In a related implementation, the invention comprises a senolytic agent for use in reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes. In a related implementation, the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for reducing the abundance of one or more pro-senescent and/or inflammatory factors in the islet cell environment of a subject, for example, a subject at risk for Type 1 diabetes.
[0031 ] In a fifth aspect, the scope of the invention encompasses a method of inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes, by the administration of a senolytic agent. Immune infiltration is a major driver of insulitis and the progression to Type 1 diabetes and is promoted by senescent and SASP cells. For example, as demonstrated herein, administration of senolytic agents inhibits chemotactic signaling by senescent cells that attracts monocytes to islets.
Accordingly, in one embodiment, the invention comprises the administration of a senolytic agent to reduce the abundance of one or more immune cell types in the beta cell environment. In one embodiment, the one or more immune cell types comprises T lymphocytes, B lymphocytes, dendritic cells, or macrophages, including monocytes.
[0032] In a related implementation, the invention comprises a senolytic agent for use in inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes. In a related implementation, the scope of the invention encompasses the use of a senolytic agent in the manufacture of a medicament for inhibiting immune infiltration of islet cells of a subject, for example, a subject at risk of Type 1 diabetes
[0033] Senolytic Agents, The methods of the invention encompass the administration of a senolytic agent. The senolytic agent may comprise any composition of matter that facilitates or causes the selective death of cells that have acquired a senescent phenotype. As used herein, reference to "a senolytic agent" encompasses the administration of a pharmaceutically effective amount of one or more senolytic agents. Such pharmaceutically effective dosage can be determined by one of skill in the art. For example, dosages of 5-500 mg/kg, for example, 1 00 mg/kg, administered 1 -7 days per week, for example 3 days per week. Where reference is made to the administration of compositions, it is understood that compositions may be formulated with any number of excipients, carriers, delivery vehicles, etc., as known in the art. It will be understood that the methods described herein encompass various delivery methods, including systemic delivery as well as localized delivery to the pancreas, including oral
administration, intravenous administration, intraperitoneal injection, or by implanted devices.
[0034] In one implementation, the senolytic agent will comprise an agent which preferentially or selectively kills SASP beta cells. For example, the agent may comprise an inhibitor of one or more BCL-2 anti-apoptotic protein family members, for example an inhibitor of Bcl-2, Bcl-xL, Bcl-w or Mcl-1 , which compositions preferentially trigger apoptosis in SASP beta cells. In one embodiment the senolytic agent is a BH3 mimetic, which can trigger apoptosis with some specificity in cells that have high levels of Bcl-2 or the related family members. In one embodiment, the senolytic agent is ABT-737, which targets Bcl-2 and family members Bcl-xL and Bcl-w. In one embodiment, the senolytic agent is ABT-1 99, which selectively targets Bcl-2. In one embodiment, the senolytic agent is Maritoclax, which targets Mcl-1 . Another the senolytic agent which targets Bcl-2 family proteins is navitoclax (ABT263).
[0035] Other senolytic agents include: dasatinib; piperlongumin; MDM2 inhibitors; Akt inhibitors; WEHI-539; A1 1 55463,; A1331 852, fisetin; Nutlin-3a; RG-1 1 72, quercetin, enzastaurin, droxinostat, and EF-24 (1 -(3,5-di-tert-butyl-4- hydroxyphenyl)-2-(3-ethyl-2- imino-2,3-dihydro-1 H-benzimidazol-1 -yl)ethanone hydrochloride).
[0036] In one implementation, the senolytic agent is an antibody, aptamer, targeted ubiquination construct, or other biological molecule, for example, comprising a peptide or nucleic acid, which selectively binds to antigens present on senescent and wherein such binding mediates, directly or indirectly, the death or elimination of such senescent cell or effector of senescence, for example by antibody dependent cell mediated cytotoxicity or similar processes.
[0037] Subjects at Risk of Type 1 Diabetes. The methods above may be applied to any animal subject, for example, human subjects or non-human animal subjects such as test animals or veterinary patients. In some implementations, the subject may be a subject that is at risk for Type 1 diabetes. As disclosed herein, subjects that progress to Type 1 diabetes undergo various senescence-related processes in beta cells that drive progression of the disease, prior to the onset of overt Type 1 diabetes. Accordingly, such subjects are amenable to the several methods of the invention which disrupt these senescent processes and the resulting progression to overt Type 1 diabetes.
[0038] In a first aspect, the subject at risk for Type 1 diabetes is a subject considered at risk of Type 1 diabetes according to known or classical classifications. In one
embodiment, the subject is deemed at-risk by the presence of one or more Type 1 diabetes risk factors, including, for example, elevated blood glucose, family history, genetic biomarkers of Type 1 diabetes risk, excessive thirst, frequent urination, or other known indicators of Type 1 diabetes risk.
[0039] In one embodiment, the subject at risk for Type 1 diabetes is a subject that has been diagnosed as prediabetic, for example as having impaired fasting glucose or impaired glucose tolerance.
[0040] In one embodiment, the subject at risk for Type 1 diabetes is a subject that has been diagnosed as having "chemical diabetes" or the latent stage of Type 1 diabetes, for example, as characterized by abnormal glucose tolerance.
[0041 ] In one embodiment, the subject at risk for Type 1 diabetes is a subject that has been diagnosed with subclinical diabetes, for example, as characterized by abnormal glucose metabolism under stress.
[0042] In one embodiment, the subject at risk for Type 1 diabetes is a subject found positive for one or more diabetes autoantibodies. Exemplary autoantibodies include islet cell autoantibodies (ICA), antibodies to insulin (IAA), glutamic acid decarboxylase (GAA or GAD) and protein tyrosine phosphatase (IA2 or ICA512).
[0043] The inventor of the present disclosure, by elucidating the role of senescent processes in the progression to Type 1 diabetes, has advantageously identified novel criteria for identifying subjects that are at risk of developing Type 1 diabetes.
[0044] In one embodiment, the subject at risk of Type 1 diabetes comprises a subject that has incidence of genotoxic stress in beta cells. For example, the genotoxic stress may be assessed by the presence of one or more biomarkers selected from the group consisting of bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF-κΒ, and CCAAT-enhancer-binding proteins (C/EBP), DNA damage repair proteins 53BP1 , NBS1 , MDC1 ; DNA damage kinases ATM and
ATR; and CHK1 and CHK2 kinases.
[0045] In one embodiment, the subject at risk of Type 1 diabetes comprises a subject that has an elevated abundance of senescent beta cells. For example, senescent beta cells may be identified by biomarkers of senescence such as nuclear p21 ; nuclear p16; BET proteins such as BRD2, BRD3, and BRD4; γ-Η2ΑΧ (a phosphorylated form of the histone variant H2AX), CDC25 phosphatases; p53, retinoblastoma tumor suppressor; senescence-associated β-galactosidase activity, senescence-associated
heterochromatic foci in chromatin; and other markers of senescence known in the art. An elevated abundance of senescent cells may be assessed as any significant accumulation of senescent cells compared to appropriate controls (e.g. age matched healthy subject), for example, the significant abundance being up to 1 % senescent cells to (as a fraction of total beta cells), up to 2% senescent cells, up to 5% senescent cells, up to 10% senescent cells, or great thanl 0% senescent cells.
[0046] In one embodiment, the subject at risk of Type 1 diabetes is a subject that has an inflammatory biomarker signature associated with the risk of Type 1 diabetes onset. In one embodiment, the inflammatory biomarker signature comprises one or more markers selected from the group consisting of CxcHO, Igfbp4, Serpingl and down- regulation of mature beta cell markers Ucn3 and lapp.
[0047] In one embodiment, the subject at risk of Type 1 diabetes comprises a subject that has incidence of SASP in beta cells. For example, SASP biomarkers include drivers of SASP such as bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF-κΒ, and CCAAT-enhancer-binding proteins (C/EBP). SASP incidence may also be assessed by the presence of secreted SASP factors in the islet cell environment, for example, secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases.
[0048] Advantageously, the inventor of the present disclosure has determined that the
appearance of for one or more diabetes autoantibodies in a subject corresponds with the onset of SASP in beta cells. Accordingly, detection of one or more diabetes autoantibodies provides an indication that a subject will be amenable to the methods of the invention. Exemplary autoantibodies include islet cell autoantibodies (ICA), antibodies to insulin (IAA), glutamic acid decarboxylase (GAA or GAD) and protein tyrosine phosphatase (IA2 or ICA512). In one embodiment, the scope of the invention encompasses methods of reducing the abundance of SASP beta cells or reducing the abundance of SASP factors in a subject at risk of Type 1 diabetes, wherein the subject at risk of Type 1 diabetes comprises a non-diabetic subject having one or more detectable types of diabetes autoantibodies.
[0049] In one embodiment, the subject at risk of Type 1 diabetes comprises a subject that has enhanced chemotactic signaling for the attraction of one or more immune cell types, with greater chemotactic signaling than observed in healthy cells. Immune cell types may include T lymphocytes, B lymphocytes, dendritic cells, or macrophages, including monocytes.
[0050] Therapeutic Methods. Various embodiments of the invention are based on the inhibition of SASP factors. A SASP factor is any species that drives the SASP phenotype or which is secreted in the manifestation of the SASP phenotype. SASP factors include, for example, drivers of SASP such as bromodomain and extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF-κΒ, and CCAAT-enhancer-binding proteins (C/EBP). SASP factors further include, for example secreted factors such as IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12, Igfpb3, IL1 , IL8, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins (including IGFBP2, IGFBP3, IGFBP4, IGFBP5, and PGFBP6), colony stimulating factor, MMP-3, MMP-10, and serine proteases
In a first aspect, given the key role of SASP in driving the progression of Type 1 diabetes, the scope of the invention encompasses methods of inhibiting the deleterious effects of the SASP phenotype to prevent and treat Type 1 diabetes. Treatment of Type 1 diabetes, as used herein, encompasses any lessening or reversal of Type 1
diabetes symptoms or slowing or arresting the progression of the condition. Likewise, as SASP has been implicated in certain aspects of Type 2 diabetes, the scope of the invention encompasses the prevention or treatment of Type 2 diabetes, encompassing any lessening or reversal of Type 2 diabetes symptoms or slowing or arresting the progression of the condition, by the inhibition of a SASP factor.
[0051 ] In one embodiment, the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of extra-terminal motif (BET) proteins (e.g. BRD2, BRd3, and BRD4), p38MAPK, JAK, NF-κΒ, and CCAAT-enhancer-binding proteins (C/EBP). In one embodiment, the BET inhibitor is selected from the group consisting of l-BET 762 (Glaxo Smith Kline), GSK525762 (Glaxo Smith Kline), OTX-015 (Merck), Ten-010 (Tensha pharmaceuticals), CPI-203 (Constellation Pharmaceuticals), CPI-0610 (Constellation Pharmaceuticals), RVX-208 (Resverlogix), LY294002, BMS-986158 (Bristol Myers Squibb), and PLX-51 107. In one embodiment, the invention comprises a BET inhibitor for use in the prevention or treatment of Type 1 diabetes. In one embodiment, the invention comprises the use of a BET inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes. In one embodiment, the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a BET inhibitor.
[0052] In one embodiment, the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of bromodomain proteins. In one embodiment, the bromodomain inhibitor is BI-2536 or TG-101348. In one embodiment, the invention comprises a bromodomain inhibitor for use in the prevention or treatment of Type 1 diabetes. In one embodiment, the invention comprises the use of a bromodomain inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes. In one embodiment, the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a bromodomain protein inhibitor.
[0053] In one embodiment, the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of P38 MAPK. In one embodiment, the P38 MAPK inhibitor is selected from a group consisting of VX-745, VX-702, RO-4402257, SCIO- 469, BIRB-796, SD-0006, PH-797804, AMG-548, LY2228820, SB-681323 and GW- 856553. In one embodiment, the invention comprises a P38 MAPK inhibitor for use in the prevention or treatment of Type 1 diabetes. In one embodiment, the invention comprises the use of a P38 MAPK inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes. In one embodiment, the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of P38 MAPK inhibitor.
[0054] In one embodiment, the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of JAK. In one embodiment, the JAK inhibitor is selected from the group consisting of roxolitnib, tofacitnib, olcacitnib, baricitnib, filgotinib, and lestauritnib. In one embodiment, the invention comprises a JAK inhibitor for use in the prevention or treatment of Type 1 diabetes. In one embodiment, the invention comprises the use of a JAK inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes. In one embodiment, the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of a JAK inhibitor.
[0055] In one embodiment, the method of the invention encompasses a method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an inhibitor of NF-κΒ signaling. In one embodiment, the NF-KB signaling inhibitor is selected from the group consisting of disulfram, olmesartan, and dithiocarbamates. In one embodiment, the invention comprises a NF-κΒ signaling inhibitor for use in the prevention or treatment of Type 1 diabetes. In one embodiment, the invention comprises the use of a NF-κΒ signaling inhibitor in a method of making a medicament for the prevention or treatment of Type 1 diabetes. In one embodiment,
the method of the invention encompasses a method of preventing or treating Type 2 diabetes, in a subject at risk of or suffering therefrom, by the administration of an NF-KB inhibitor.
[0056] In another aspect, the scope of the invention encompasses methods of preserving beta cells in subjects having diabetes by the administration of a senolytic agent. Diabetic subjects, including subjects having Type 1 or Type 2 diabetes, have depleted numbers of healthy beta cells, which cells are lost by the ongoing underlying processes of these diabetic conditions. Removal of deleterious senescent cells will aid in the preservation of remaining healthy beta cells. Accordingly, the scope of the invention encompasses methods of preserving healthy beta cells in subjects having Type 1 or Type 2 diabetes by the administration of a senolytic agent. Preserving the number of healthy beta cells encompasses any treatment which prevents the death or incapacitation of beta cells in a treated subject, for example, in comparison to like untreated subjects. Likewise, the invention encompasses a senolytic agent for use in preserving healthy beta cells in subjects having Type 1 or Type 2 diabetes.
[0057 ] Diagnostic Methods. In one aspect, the scope of the invention encompasses methods of identifying subjects at risk of Type 1 diabetes. The risk of Type 1 diabetes may be based on the observation that the subject meets certain selected criteria. For example, the subject may be considered at risk of diabetes based on a criteria selected from the group consisting of: has been diagnosed as prediabetic; has been diagnosed as having subclinical diabetes; has been diagnosed as having chemical diabetes; has autoantibodies that target beta cells; has insulitis; has ongoing stress response processes in beta cells; has an inflammatory signature in beta cells; has a significant abundance of senescent beta cells; SASP condition is present in beta cells; has secreted SASP factors in the islet cell environment; has chemotactic signaling that promotes the infiltration of immune cells to the islet cell environment. Each such criteria may be established by the presence of one or more biomarkers, for example, as described in the preceding section.
[0058] In one aspect, the scope of the invention encompasses a method of ascertaining
whether a subject is at risk of Type 1 diabetes, comprising the following process: a sample is obtained from the subject; the presence and/or abundance of one or more biomarkers associated with a selected at-risk criteria is assessed in the sample; and the subject is deemed to be at risk of Type 1 diabetes status if the sample is positive for the one or more biomarkers associated with the selected at-risk criteria.
[0059] The sample may comprise any sample appropriate for assessing the selected biomarkers. The sample may be any material withdrawn from the patient wherein the selected marker of beta cell senescent processes is measureable. For example, in some embodiments, the biomarker is present systemically and may be assessed in serum, urine, whole blood, saliva, etc. In some embodiments, the sample is a bone marrow derived sample, including any cells, fluids, or other materials present in bone marrow. In some embodiments, the sample is interstitial fluid from or from around the vicinity of the pancreas. The target biomarkers may be measured by any suitable means known in the art, for example by fluorescent antibody analysis, protein expression analysis, enzymatic assays, etc.
[0060] Engineered Cells. In one aspect, the scope of the invention encompasses engineered beta cells, wherein the engineered cells comprise one or more genetic modifications which inhibit the onset or manifestation of senescent processes, including the acquisition of the SASP phonotype. For example, the one or more genetic modifications may comprise the attenuation of senescence-associated genes, the attenuation of SASP-drivers, or the attenuation of secreted SASP factor genes.
Attenuation may comprise, for example, gene silencing, mutation, or deletion.
[0061 ] The engineered cells of the invention may be used in the context of cellular therapy, for example in replacing or augmenting senescent beta cells with cells that are resistant to senescence or impaired in their ability to become senescent. The use of
implanted beta cells for the treatment of Type I diabetes is known. For example, islet cells including beta cells and beta cell precursors have been implanted into patients, for example, to the pancreas. Implanted beta cells have also previously been implanted in the form of an artificial pancreas-type organ, for example, being implanted
subcutaneously, or to the liver. In one implementation, the methods of the invention encompass the transplantation of senescence-resistant or senescence-impaired engineered beta cells or beta cell precursors to the body of the subject.
[0062] Examples. The following research summary describes various experiments which elucidate the role of senescent processes in beta cells in Type I diabetes and which demonstrate the efficacy of senolytic agents in disrupting senescence-related processes and preventing the onset of Type 1 diabetes.
[0063] Example 1. Beta cells acquire SASP during the progression of T1D in NOD mice. To identify changes in transcriptional signatures in the beta cells during the progression of the disease, differentially expressed RNA transcripts in islets from female euglycemic NOD mice were compared at 8 and 14 weeks by single-cell RNA
sequencing. Beta cells (identified by high expression of Ins1 and Ins2) from 8 week and 14 week islets were clustered separately. Two transcriptomically-distinct clusters of beta cells were unique to 14-week beta cells. The relatively larger cluster expressed markers of cellular stress response primarily driven by the CDKI Cdknia (encoding p21 ) while the smaller one demonstrated a distinct inflammatory gene signature including CxcHO, Igfbp4, and Serpingl and down-regulation of mature beta cell markers such as Ucn3 and lapp. Expression of Cdknia and inflammatory markers CxcHO, Serpingl and Igfbp4 were all increased on a global level in the beta cells of 14-week NOD mice compared with the 8-week mice. A two-dimensional (force-directed) nearest neighbor graph embedding, typically used to visualize continuous gene-expression topologies in high-dimensions, placed beta cells from these two 14-week-specific clusters along a common trajectory that progressed from cellular stress response to an inflammatory state.
[0064] Immunohistochemistry was used to assess expression of CDKIs, Cdkn2a (p16) and Cdkni a (p21 ) and Ser139 phosphorylated Histone H2A.X (γ-Η2Α.Χ) as a measure of DNA damage. In C57BL6/J mice, the expression of p16 increased gradually during aging and accumulated in beta cells after 6 months of age, consistent with the onset of age-related senescence in beta cells. In contrast, Cdkni a was not detected in islets at any age. However, in NOD mice Cdkn2a was already highly expressed in insulin- positive beta cells at 14-weeks of age. In addition, islets from 14-week old NOD mice showed increased expression of Cdkni a and elevated levels of γ-Η2Α.Χ relative to 8- week mice. Thus the immunohistochemistry analysis is consistent with the scRNA-seq data in that during the progression of towards T1 D in NOD mice beta cells exhibit features of stress response senescence.
[0065] Hierarchical clustering analysis of the scRNA-seq data indicated that the cluster of beta cells that was segregated in the 14-week old NOD mice had an inflammatory signature related to SASP. Immunohistochemistry analysis showed that in contrast to 8 week old mice, insulin-expressing cells from 14-16 week old NOD mice co-stained for several SASP markers, including IL-6, Flnb and Mmp2. Moreover, SASP factors were not detected readily by immunostaining in the beta cells of aged (>20 month) C57BL/6 mice.
[0066] The secretome of islet cells from the 14-16 week NOD mice was analyzed. Islets depleted of CD45+ cells were cultured in serum-free media and the resulting culture supernatant, hereafter referred to as conditioned media (CM) was analyzed using a bead-based multi-analyte luminex assay including a variety of key SASP factors and immune cell-specific non-SASP factors (IL-2, Granzyme B). Consistent with the immunohistochemistry analysis, the secretion of SASP factors (IL-6, Serpinel , G-CSF, Ccl2, Mmp9, Mmp12 and Igfpb3) was dramatically higher in the CD45-depleted islet cell populations from 14-week NOD mice as compared with 8-week mice. To determine the time-course of the stress response and SASP in beta cells, younger cohorts of 10 and 12-week old euglycemic NOD mice were analyzed by immunostaining for Cdkni a and IL-6. At 10 weeks, Cdkni a was detected in beta cells, but SASP marker IL-6 was not detected and at 12 weeks both senescence and SASP markers were evident in beta
cells suggesting that the stress response precedes the acquisition of SASP. Taken together these data indicate that prior to hyperglycemia, beta cells harboring hallmarks of a senescence-like stress response accumulate in NOD mice that gradually acquire SASP by 12-16 weeks.
[0067] Example 2. Beta cell stress response senescence and SASP in human T1D. To determine whether beta cells undergo a stress response senescence and acquire SASP during the natural history of T1 D in humans, (SA-Pgal) activity, a classical biomarker for senescent cells was assessed on pancreas sections from nondiabetic, auto-antibody positive (high risk for T1 D, but no overt disease) and recent onset (<2 years) adolescent and young adult T1 D donors. In humans SA-Pgal activity in islet cells is low in adolescents and young adults but gradually increases with age. SA-Pgal activity was dramatically elevated in the islets of T1 D donors relative to similarly aged nondiabetic and autoantibody-positive donors. Immunostaining for CDKN1 A, CDKN2A and γ-Η2Α.Χ on pancreas sections from a larger cohort of similarly aged juvenile (12-18 years old) and young adult (20-37 years old) donors from nondiabetic, autoantibody positive (autoab+) and early onset T1 D (ranging from <1 year to 6 years) was
performed. CDKN2A expression was low or absent in young children donor islets (age 2), but was increased in young adult (20-25) and was highest in geriatric donors (>70 years old), consistent with age-related beta cell senescence, while CDKN1 A was not detectable in any human samples throughout this age range. Strikingly, autoab+ and T1 D donors had dramatically increased expression of these senescence markers in beta cells as compared with nondiabetic donors. To determine if beta cells from T1 D donors acquired SASP, SASP markers, IL-6, SERPINE1 , IL-8 and MMP9 were stained for in the same cohort. These SASP markers were clearly increased in the beta cells of autoab+ and T1 D donors relative to nondiabetic donors. On average, there was -3-5- fold more CDKN1 A+ beta cells in autoab+ and recent onset T1 D donors relative to nondiabetic donors. The difference in SASP marker IL-6 was more striking, as IL-6 was expressed in -10-14% of beta cells in the autoab+ and recent onset T1 D donors on average but was rarely observed in nondiabetic individuals.
[0068] Next, normal human donor islets were treated with the chemotherapeutic agent bleomycin to induce double-strand DNA breaks and monitored the development of stress-induced senescence and SASP by qRT-PCR and secretion assays after 5 days, coinciding with the typical onset of SASP. Notably, bleomycin treatment induced expression of CDKN1A and CDKN2A, consistent with the induction of senescence in a subset of the islet cells. Luminex assays on the CM from the bleo-treated islets showed increased levels of SASP factors IL-6, IL-8, IL-1 β and TNFa compared with control islet CM. Taken together, these data indicate that beta cells harboring SASP accumulate in autoab+ and recent onset T1 D human donors and that these changes are consistent with changes occurring during the senescence of human islets in response to stress and is distinct from natural age-related beta cell senescence.
[0069] Example 3. Non-cell autonomous activities of islet SASP. To address whether the SASP of beta cells had non-cell autonomous effects resembling SASP, the ability of secreted factors from CD45-depleted islet cells of 14 wk NOD mice to induce senescence in NOD mouse embryonic fibroblasts (MEFs) and in 8 week NOD islets (when senescence is not observed) was assessed. When early passage NOD MEFs were cultured in the presence of CM from 14 wk CD45-depleted NOD islet cells (NCM) they induced Cdknla and Cdkn2a expression and increased SA-Pgal activity, similarly to the senescent MEF CM control (SCM). The NCM was also capable of increasing the proportion of SA-Pgal+ cells in the cultured islets from 8 week old NOD mice.
[0070] To test whether senescence and SASP could be transmitted in a paracrine fashion to human islets, senescence was induced with bleomycin or etoposide in human BJ fibroblasts or WI-38 fibroblasts, respectively and 5 days later CM was collected. ELISA confirmed that senescent BJ cells secreted high levels of IL-6, consistent with expression of SASP. Notably, the CM from senescent BJ cells could induce paracrine senescence in WI-38 primary lung fibroblasts, and vice-versa, confirming that the senescent fibroblast CM had paracrine senescence activity. Human islets were then cultured in the presence of serum-free media (SFM) as a control or CM from the senescent fibroblasts (SCM) for 5 days and senescence and SASP markers were interrogated by qRT-PCR and secretion assays. Strikingly, islets cultured with the SCM
showed increased CDKN1A and CDKN2A expression along with SASP genes IL6, IL8, and MMP3, relative to the SFM cultured islets. These islets also showed SASP secretion as evidenced by increased levels of IL-6 in the resulting islet CM.
[0071 ] The ability of CM from NOD islet cells and human islets to induce monocyte chemotaxis using the transwell assay was tested using the human THP-1 cell line. NCM was capable of stimulating chemotaxis 3-fold over the SFM control, similarly to the positive control, serum-free media conditioned with recombinant mouse CCL2. In addition, CM from human islets expressing SASP induced THP1 chemotaxis ~5-fold over the SFM control. Taken together, these data demonstrate that the SASP from NOD islet cells and human islets exhibits non-cell autonomous activities.
[0072] Example 4. BH3 mimetics preferentially eliminate SASP beta cells in NOD mice. To determine the role of SASP cells in the development of T1 D, we next explored whether pro-survival checkpoints could be exploited to promote selective deletion of senescent beta cells. As senescent cells, like tumor cells, have been shown to upregulate members of the anti-apoptotic Bcl-2 family of proteins, immunostaining was used to assess the levels of Bcl-2 in islets of NOD mice. Bcl-2 was overexpressed in islets with SASP beta cells indicating that these cells were resistant to apoptosis and that SASP beta cells would be sensitive to drugs that interfered with the interactions of anti- and pro- apoptotic members. The Bcl-2 family contains a hydrophobic groove called the BH3 domain and 'BH3 mimetics' are pharmacological compounds that mimic the binding of the BH3-only initiator proteins to the pro-survival members. The BH3 mimetics can trigger apoptosis with some specificity in cells that have high levels of Bcl- 2 or the related members. A number of small molecule inhibitors that target Bcl-2, Bcl- xL, Bcl-w or Mcl-1 proteins have been developed and some of them have been used to preferentially trigger apoptosis in senescent cells, both in vitro and in vivo. To determine which Bcl-2 pro-survival members were relevant to SASP islet cells, we treated NOD islets with BH3 mimetics that had different specificities. ABT-737 targets Bcl-2 and family members Bcl-xL and Bcl-w, ABT-199 selectively targets Bcl-2, and Maritoclax targets only Mcl-1 . To determine which Bcl-2 pro-survival members were relevant to SASP islet cells, NOD islets were treated with three different BH3 mimetics that had
different specificities, ABT-737, ABT-199 and Maritoclax. There was a significant reduction of both Cdknla and Cdkn2a imRNA from islets treated with ABT-737 or ABT- 199 whereas Maritoclax did not have effects.
[0073] For studies using ABT-737, 10 week old euglycemic NOD/ShiltJ mice were given oral gavage of 100 mg/kg ABT-737 or vehicle (30% propylene glycol, 5% Tween- 80 and 65% D5W) for 3 consecutive days followed by a break for 4 days and then again treated for 3 days (a total of 6 doses), and then untreated for 2 weeks followed by three consecutive days of ABT-737 or vehicle treatment and then allowed to age without further treatment until 28 weeks of age. Same outline was followed for ABT-199, wherein 1 1 week old euglycemic NOD/ShiltJ mice were given ABT-199 or vehicle (60% phosphal 50 PG, 30% PEG 400 and 10% ethanol) by i.p injection every alternate day for 2 weeks and then RBG was measured until 28 weeks of age. did not have any effect.
[0074] To determine whether ABT-737 targeted SASP beta cells for apoptosis in vivo, NOD mice were administered ABT-737 via oral gavage for 1 week followed by analysis of senescence and SASP markers by immunostaining. While over 50% of beta cells in islets from 12 week NOD mice expressed Cdkn2a, NOD mice administered ABT-737 showed a marked reduction in Cdkn2a. Quantification revealed that ABT-737 led to over 40% reduction in Cdkn2a+ beta cells. The SASP marker Mmp2 was reduced to an even greater extent, as Mmp2+ beta cells were only rarely detected in ABT-737-treated mice relative to controls.
[0075] Islets isolated from vehicle controls, ABT-737-treated mice or ABT-199-treated mice were depleted of CD45+ cells and CM was collected The CM from CD45-depleted islet cells of NOD mice treated with ABT-737 or ABT-199 showed lower levels of most of the SASP factors as compared to vehicle control mice. Consistent with decreased SASP, CM from CD45-depleted islet cells of ABT-737-treated mice also showed diminished paracrine senescence activity on NOD MEFs and on 8-week NOD islet cells. Similarly, THP1 chemotaxis activity was reduced in the CM upon ABT-737 treatment of islets relative to vehicle-treated islets ex vivo.
[0076] Example 5. Targeted depletion of SASP beta cells prevents diabetes in NOD mice The impact of senolytic treatments on immune cells was assessed. In islets from NOD mice treated with ABT-737, there was a 2-fold increase in apoptotic cells, as measured by flow cytometry for Annexin V and propidium iodide, in the endocrine compartment compared to vehicle control mice (Fig. 1 ). This was also confirmed by TUNEL staining to directly visualize apoptotic islets cells, in that pancreata from ABT- 737 treated mice showed TUNEL+ cells within the islet that were rarely observed in islets from vehicle control mice. Importantly there were no significant differences in apoptosis in the immune compartment of ABT-737-treated mice relative to vehicle controls. Flow cytometry was then used to examine the distributions and proportions of main lymphoid cell types involved in T1 D in the spleen, pancreatic lymph nodes, and islets from vehicle control and ABT-737- and ABT-199-treated mice. Strikingly, this analysis revealed no significant changes in the proportions or balance of effector T cells, B cells and regulatory T cells in the treated mice relative to vehicle control mice, aas well as no changes in the proportions of macrophages or dendritic cells in these tissue sites, indicating the the senolytic drugs used do not target the immune
compartment.
[0077] To determine whether clearance of SASP beta cells prevented diabetes, 10 week euglycemic NOD mice were administered ABT-737 by oral gavage for two weeks, followed by another dose at 16 weeks and allowed to age. Strikingly, while 60% of vehicle control mice were diabetic at this time, only 40% of ABT-737-treated mice became diabetic (Fig. 2). We performed a similar study with ABT-199, administering the drug by oral gavage for 2 weeks from 1 1 -13 weeks of age and allowing the mice to age to 30 weeks. Remarkably, while 100% of the controls became diabetic by 28 weeks, only 10% of the ABT-199-treated mice were diabetic (Fig. 3). Taken together, these data support the conclusion that SASP beta cells promote the progression of T1 D.
[0078] Conclusions. The findings support the conclusion that pancreatic beta cells activate a cellular stress program and acquire a SASP phenotype during the
development of T1 D in NOD mice and humans. In the NOD mice, beta cells with SASP were most frequently observed in islets with insulitis, consistent with the idea that immune cells trigger cellular stress in beta cells. The accumulation of SASP beta cells in T1 D suggests a failure of immune-mediated clearance. Failure to clear the SASP beta cells in a timely fashion could result in an accumulation that is likely to promote disease progression in T1 D. The clearance of SASP beta cells with senolytic agents may compensate for the failure of the immune response to SASP cell surveillance in T1 D. Targeting SASP beta cells using senolytic drugs to halt the disease and preserve functional beta cell mass provides a new paradigm for developing T1 D therapies.
[0079] All patents, patent applications, and publications cited in this specification are herein incorporated by reference to the same extent as if each independent patent application, or publication was specifically and individually indicated to be incorporated by reference. The disclosed embodiments are presented for purposes of illustration and not limitation. While the invention has been described with reference to the described embodiments thereof, it will be appreciated by those of skill in the art that modifications can be made to the structure and elements of the invention without departing from the spirit and scope of the invention as a whole.
Claims
Claim 1 . A senolytic agent for use in the prevention of Type 1 diabetes in a subject at risk of Type 1 diabetes.
Claim 2. A senolytic agent for use in reducing the abundance of senescent beta cells in a subject at risk of Type 1 diabetes.
Claim 3. A senolytic agent for use in reducing the abundance of SASP beta cells in a subject at risk for Type 1 diabetes.
Claim 4. A senolytic agent for use in reducing the abundance of one or more SASP factors in the islet cell environment of a subject at risk for Type 1 diabetes.
Claim 5. The senolytic agent of Claim 4, wherein the one or more SASP factors is selected from the group consisting Serpinel , G-CSF, Ccl2, Igfpb3, IL6, IL1 , IL8, Fnlb, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins, colony stimulating factor, MMP-2, MMP-3, MMP-9, MMP-10, MMP-12 and a serine protease.
Claim 6. A senolytic agent for use in inhibiting infiltration of islet cells of a subject by immune cells, wherein the subject is at risk of Type 1 diabetes.
Claim 7. The senolytic agent of Claim 6, wherein the infiltrating immune cells are selected from T lymphocytes, B lymphocytes, dendritic cells, and macrophages.
Claim 8. The senolytic agent of any of Claims 1 -7, wherein the senolytic agent is selected from the group consisting of ABT-737; ABT-199; Maritoclax; navitoclax;
dasatinib; piperlongumin; an MDM2 inhibitor; an Akt inhibitor; WEHI-539; A1 155463; A1331852, fisetin; Nutlin-3a; RG-1 172; quercetin; enzastaurin; droxinostat; and EF-24.
Claim 9. The senolytic agent of any of Claims 1 -7, wherein the senolytic agent comprises an agent which preferentially or selectively kills SASP beta cells.
Claim 10. The senolytic agent of Claim 9, wherein the senolytic agent comprises an inhibitor of one or more BCL-2 anti-apoptotic protein family members.
Claim 1 1 . The senolytic agent of any of Claims 1 -7, wherein the senolytic agent is a biological molecule that will preferentially bind to senescent cells wherein such binding promotes the elimination of the senescent cell.
Claim 12. The senolytic agent of any of Claims 1 -7, wherein the subject at risk of Type 1 diabetes is a non-diabetic subject having one or more attributes selected from the group consisting of: has been diagnosed as prediabetic; has been diagnosed as having subclinical diabetes; has been diagnosed as having chemical diabetes; has one or more type of detectable diabetes autoantibodies; has insulitis; has ongoing stress response processes in beta cells; has an inflammatory signature in beta cells; has a significant abundance of senescent beta cells; has SASP beta cells; has secreted SASP factors in the islet cell environment; has infiltration of immune cells to the islet cell environment.
Claim 13. The senolyitc agent of Claim 12, wherein the subject has one or more type of detectable diabetes autoantibody.
Claim 14. An inhibitor of a SASP factor for use in preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom.
Claim 15. A BET inhibitor for use in preventing or treating Type 1 diabetes, in a subject
at risk of or suffering therefrom.
Claim 16. The BET inhibitor of Claim 15, wherein the BET inhibitor is selected from the group consisting of l-BET 762, GSK525762, OTX-015, Ten-010, CPI-203, CPI-0610, RVX-208, LY294002, BMS-986158, and PLX-51 107.
Claim 17. A bromodomain inhibitor for use in preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom.
Claim 18. The bromodomain inhibitor of Claim 17, whrein the bromodomain inhibitor is selected from the group consisting of BI-2536 or TG-101348.
Claim 19. A P38 MAPK inhibitor for use in preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom.
Claim 20. The P38 MAPK inhibitor of Claim 19, wherein the P38 MAPK inhibitor is selected from the group consisting of VX-745, VX-702, RO-4402257, SCIO- 469, BIRB- 796, SD-0006, PH-797804, AMG-548, LY2228820, SB-681323 and GW-856553.
Claim 21 . A JAK inhibitor for use in preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom.
Claim 22. The JAK inhibitor of Claim 21 , wherein the JAK inhibitor is selected from the group consisting of roxolitnib, tofacitnib, olcacitnib, baricitnib, filgotinib, and lestauritnib.
Claim 23. An NF-κΒ inhibitor for use in preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom.
Claim 24. The NF-κΒ inhibitor of Claim 23, wherein the NF-κΒ inhibitor is selected from the group disulfram, olmesartan, and a dithiocarbamate.
Claim 25. A senolytic agent for preserving beta cells in a subject suffering from Type 1
or Type 2 diabetes.
Claim 26. The senolyitc agent of Claim 25, wherein the senolytic agent is selected from the group consisting of ABT-737; ABT-199; Maritoclax; navitoclax; dasatinib;
piperlongumin; an MDM2 inhibitor; an Akt inhibitor; WEHI-539; A1 155463; A1331852, fisetin; Nutlin-3a; RG-1 172; quercetin; enzastaurin; droxinostat; and EF-24.
Claim 27. The senolytic agent of Claim 25, wherein the senolytic agent comprises an agent which preferentially or selectively kills SASP beta cells.
Claim 28. The senolytic agent of Claim 27, wherein the senolytic agent comprises an inhibitor of one or more BCL-2 anti-apoptotic protein family members.
Claim 29. The senolytic agent of Claims 25, wherein the senolytic agent is a biological molecule that will preferentially bind to senescent cells wherein such binding promotes the elimination of the senescent cell.
Claim 30. A method of preventing Type 1 diabetes in a subject at risk therefore comprising the administration of a senolytic agent to the subject.
Claim 31 . A method of reducing the number of senescent beta cells in a subject at risk for Type 1 diabetes, comprising the administration of a senolytic agent to the subject.
Claim 32. A method of reducing the abundance of SASP beta cells in a subject at risk for Type 1 diabetes, comprising the administration of a senolytic agent to the subject.
Claim 33. A method of reducing the abundance of one or more SASP factors in the islet cell environment of a subject at risk for Type 1 diabetes, comprising the administration to the subject of a senolytic agent.
Claim 34. The method of Claim 33, wherein the one or more SASP factors is selected
from the group consisting of Serpinel , G-CSF, Ccl2, Igfpb3, IL6, IL1 , IL8, Fnlb, CXCL1 , CXCL2, monocyte chemotactic protein 3, insulin-like growth factor-binding proteins, colony stimulating factor, MMP-2, MMP-3, MMP-9, MMP-10, MMP-12 and a serine protease.
Claim 35. A method of inhibiting the infiltration of islet cells of a subject at risk of Type 1 diabetes by immune cells, comprising the administration to the subject of a senolytic agent.
Claim 36. The method of any of Claims 30-35, wherein the senolytic agent is selected from the group consisting of ABT-737; ABT-199; Maritoclax; navitoclax; dasatinib;
piperlongumin; an MDM2 inhibitor; an Akt inhibitor; WEHI-539; A1 155463; A1331852, fisetin; Nutlin-3a; RG-1 172; quercetin; enzastaurin; droxinostat; and EF-24.
Claim 37. The method of any of Claims 30-35, wherein the senolytic agent comprises an agent which preferentially or selectively kills SASP beta cells.
Claim 38. The method of Claim 37, wherein the senolytic agent comprises an inhibitor of one or more BCL-2 anti-apoptotic protein family members.
Claim 39. The method of any of Claims 30-35, wherein the senolytic agent is a molecule that will preferentially bind to senescent cells wherein such binding promotes the elimination of the senescent cell.
Claim 40. The method of any of Claims 30-35, wherein the subject at risk of Type 1 diabetes is a non-diabetic subject having one or more attributes selected from the group consisting of: has been diagnosed as prediabetic; has been diagnosed as having subclinical diabetes; has been diagnosed as having chemical diabetes; has diabetes autoantibodies; has insulitis; has ongoing stress response processes in beta cells; has an inflammatory signature in beta cells; has a significant abundance of senescent beta
cells; has SASP beta cells; has secreted SASP factors in the islet cell environment; has infiltration of immune cells to the islet cell environment.
Claim 41 . A method of preventing or treating Type 1 diabetes, in a subject at risk of or suffering therefrom, by the administration of an agent an inhibitor of one or more SASP factors.
Claim 42. The method of Claim 41 , wherein the SASP factor is a BET protein and the inhibitor is a BET inhibitor.
Claim 43. The method of Claim 42, wherein the BET inhibitor is selected from the group consisting of l-BET 762, GSK525762, OTX-015, Ten-010, CPI-203, CPI-0610, RVX- 208, LY294002, BMS-986158, and PLX-51 107.
Claim 44. The method of Claim 41 , wherein the SASP factor is a bromodomain protein and the inhibitor is a bromodomain inhibitor.
Claim 45. The method of Claim 44, wherein the bromodomain inhibitor is selected from the group consisting of BI-2536 or TG-101348.
Claim 46. The method of Claim 41 , wherein the SASP factor is a P38 MAPK and the inhibitor is a P38 MAPK inhibitor.
Claim 47. The method of Claim 46, wherein the P38 MAPK inhibitor is selected from the group consisting of VX-745, VX-702, RO-4402257, SCIO- 469, BIRB-796, SD-0006, PH-797804, AMG-548, LY2228820, SB-681323 and GW-856553.
Claim 48. The method of Claim 41 , wherein the SASP factor is JAK and the inhibitor is a JAK inhibitor.
Claim 49. The method of Claim 48, wherein the JAK inhibitor is selected from the
group consisting of roxolitnib, tofacitnib, olcacitnib, baricitnib, filgotinib, and lestauritnib.
Claim 50. The method of Claim 41 , wherein the SASP factor is NF-κΒ and the inhibitor is an NF-KB inhibitor.
Claim 51 . The method of Claim 50, wherein the NF-κΒ inhibitor is selected from the group disulfram, olmesartan, and a dithiocarbamate.
Claim 52. A method of preserving healthy beta cells in a subject suffering from Type 1 or Type 2 diabetes, comprising the administration of a senolytic agent.
Claim 53. The method of Claim 52, wherein the senolytic agent is selected from the group consisting of ABT-737; ABT-199; Maritoclax; navitoclax; dasatinib; piperlongumin; an MDM2 inhibitor; an Akt inhibitor; WEHI-539; A1 155463; A1331852, fisetin; Nutlin-3a; RG-1 172; quercetin; enzastaurin; droxinostat; and EF-24.
Claim 54. The method of Claim 52, wherein the senolytic agent comprises an agent which preferentially or selectively kill SASP beta cells.
Claim 55. The methods of Claim 53, wherein the senolytic agent which preferentially or selectively kill SASP beta cells comprises an inhibitor of one or more BCL-2 anti- apoptotic protein family members.
Claim 56. The method of Claim 5, wherein the senolytic agent is a molecule that will preferentially bind to senescent cells wherein such binding promotes the elimination of the senescent cell.
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