WO2018088803A1 - Autoimmune encephalitis type determination method using hla genotype testing - Google Patents

Autoimmune encephalitis type determination method using hla genotype testing Download PDF

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WO2018088803A1
WO2018088803A1 PCT/KR2017/012614 KR2017012614W WO2018088803A1 WO 2018088803 A1 WO2018088803 A1 WO 2018088803A1 KR 2017012614 W KR2017012614 W KR 2017012614W WO 2018088803 A1 WO2018088803 A1 WO 2018088803A1
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hla
allele
autoimmune encephalitis
encephalitis disease
alleles
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French (fr)
Korean (ko)
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주건
이상건
정근화
이순태
김만호
김태준
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(주) 어드밴스드 엔티
(주)에이엔티랩스
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Priority to KR1020197013116A priority Critical patent/KR102064895B1/en
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    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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Definitions

  • the present invention relates to a method of determining the type of autoimmune encephalitis using HLA genotyping.
  • Encephalitis is a neurological disorder that leaves serious aftereffect disorders if the correct diagnosis and proper treatment are not made promptly. Encephalitis can be roughly divided into infectious encephalitis and autoimmune encephalitis.
  • Autoimmune encephalitis is a newly discovered disease in recent decades. About 20-30% of all encephalitis patients are autoimmune encephalitis. In the case of autoimmune encephalitis, diagnosis is usually made through autoantibody detection, but a variety of causative antibodies and new antibodies continue to be discovered, which makes it difficult to accurately diagnose existing antibody test kits alone.
  • An object of the present invention is to provide a method for determining the detailed type of autoimmune encephalitis through HLA genotyping.
  • Method for providing information about autoimmune encephalitis disease comprises the steps of obtaining a biological sample isolated from the sample, identifying the HLA genotype from the biological sample and provides information related to the autoimmune encephalitis disease according to the HLA genotype It includes a step.
  • the providing of the information according to the present invention may include providing information related to autoimmune encephalitis disease according to a comparison between the identified HLA genotype and the genotype of the reference allele.
  • the reference allele according to the present invention is the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele It is characterized by any one of.
  • the information related to the autoimmune encephalitis disease according to the present invention is characterized by including the possibility of the occurrence of autoimmune encephalitis disease.
  • the possibility of occurrence of the autoimmune encephalitis disease according to the present invention is the HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * If at least one allele of the 07:06 allele is present in the biological sample, the likelihood of developing an autoimmune encephalitis disease is higher.
  • the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
  • the biological sample according to the invention is characterized in that any one selected from synovial fluid, blood, lymph, urine, tear fluid, saliva or feces.
  • the presence of the biological sample according to the present invention is characterized by any one method selected from HLA-genotyping, serotyping assay or HLA microcytotoxicity assay.
  • kits for predicting autoimmune encephalitis disease is HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * 07: 06 Includes means for detecting any of the alleles.
  • the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
  • the method for providing information on autoimmune encephalitis disease provides an information on autoimmune encephalitis disease using HLA genotyping, thereby providing a more accurate and rapid treatment of autoimmune encephalitis disease.
  • FIG. 1 shows HLA-DRB1 * 07: 01-DQB1 * 02: 02, HLA-DRB1 * 07 in an experimental group of autoimmune encephalitis patients including anti-LGI1 encephalitis and anti-NMDAR encephalitis and a control group including epilepsy patients and the general population.
  • the carrier frequency of * 07: 01-DQB1 * 02: 02 is shown in a bar graph.
  • Figure 3 shows that a portion of the LGI1 fragment and the HLA-DRB1 * 07: 01-DRA1 * 01: 01 heterodimer is bound.
  • HLA Human leukocyte antigen
  • HLA is located on chromosome 6p21.31 and comprises a region of about 3.6 Mbp depending on haplotype.
  • HLA molecules are encoded by three gene groups, HLA class I, HLA class II and HLA class III genes.
  • HLA class I proteins are encoded by the genes HLA-A, HLA-B, and HLA-C.
  • HLA allele naming is done according to the 2010 WHO Naming Committee for Factors in the HLA System. Several digits are used to identify the HLA allele. Certain HLA loci (HLA-A, HLA-B, HLA-C, HLA-DR, HLA-DQ, and HLA-DP) are separated by the symbol * from the two digits assigning serological equivalents of the antigen.
  • HLA-A * 2402 represents a group of alleles from the HLA-A locus.
  • "Two digit" resolution refers to a group of alleles composed of various alleles that encode similar antigens or share high sequence homology. This is followed by a colon and / or a two or three digit number, which identifies a particular coding protein (this level describes a "subtype” or "allele subtype”).
  • HLA-A * 2402 is a specific allele within a group of alleles encoding HLA-A having a specific amino acid sequence. This “four digit” resolution represents a particular genomic sequence variation in the allele family that results in a difference in amino acid sequence of the encoded polypeptide product. Alleles can be further defined using additional colons and numbers that indicate synonymous DNA substitutions within the coding region of the allele or indicate DNA differences within the non-coding regions (9 digit level).
  • the “HLA-A * 2402 allele group” is an allele group (or type) from the HLA-A locus that consists of various alleles that encode HLA-A24 serological antigens or share high sequence homology. Refers to.
  • HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 allele means HLA-DRB1 * 07: 01, HLA-DQB1 * Nucleic acid products of 02:02, HLA-B * 44: 03 or HLA-C * 07: 06 alleles and HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA -Polypeptide product of the C * 07: 06 allele.
  • Polypeptide products of HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 alleles means HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, polypeptide encoded by HLA-B * 44: 03 or HLA-C * 07: 06 allele, HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or a fragment of the polypeptide encoded by the HLA-C * 07: 06 allele and each serological antigen.
  • Nucleic acid product of HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 allele means HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, any DNA (genome, cDNA, etc.) or RNA product (e.g., pre-mRNA, mRNA, microRNA, etc.) of the HLA-B * 44: 03 or HLA-C * 07: 06 allele And fragments thereof.
  • Specimens according to the invention include mammals, preferably humans. More preferably, genetic variation and frequency of the drug response between races and ethnicities may be considered, and thus the specimen may be Korean.
  • the biological sample is not limited thereto, but is preferably selected from synovial fluid, blood, lymph, urine, tear fluid, saliva, oral mucosal cells or feces.
  • Method for providing information about autoimmune encephalitis disease comprises the steps of obtaining a biological sample isolated from the sample, identifying the HLA genotype from the biological sample and provides information related to the autoimmune encephalitis disease according to the HLA genotype It includes a step.
  • the providing of the information according to the present invention may include providing information related to autoimmune encephalitis disease according to a comparison between the identified HLA genotype and the genotype of the reference allele.
  • the reference allele according to the present invention is the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele It is characterized by any one of.
  • the information related to the autoimmune encephalitis disease according to the present invention is characterized by including the possibility of the occurrence of autoimmune encephalitis disease.
  • the possibility of occurrence of the autoimmune encephalitis disease according to the present invention is the HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * If at least one allele of the 07:06 allele is present in the biological sample, the likelihood of developing an autoimmune encephalitis disease is higher.
  • the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
  • the biological sample according to the invention is characterized in that any one selected from synovial fluid, blood, lymph, urine, tear fluid, saliva or feces.
  • the presence of the biological sample according to the present invention is characterized by any one method selected from HLA-genotyping, serotyping assay or HLA microcytotoxicity assay.
  • kits for predicting autoimmune encephalitis disease is HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * 07: 06 Includes means for detecting any of the alleles.
  • the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
  • the serum and cerebrospinal fluid of the patients were screened for the presence of brain activating autoantibodies using immunostaining with the brain of rats.
  • cell-based synaptic-autoantibodies comprising anti-NMDAR, LGI1, CASPR2 (Contactin-associated protein-like 2), AMPA1, AMPA2, and GABAB-R ( ⁇ -aminobutyric-acid type B receptors) Test with immunocytochemistry kit (Euroimmun AG, Lubeck, Germany).
  • Typical paraneoplastic autoantibodies, including anti-Hu, Yo, Ri, Ma2, CV2 / CRMP5 and Amphiphysin, were tested using an immunoblotting kit (Euroimmun). Demographic, clinical and diagnostic results of enrolled patients were analyzed.
  • Genomic DNA was extracted from the peripheral blood of anti-LGI1 encephalitis patients or anti-NMDAR encephalitis patients and analyzed for HLA genotype by the method described above.
  • the genotypes of the HLA-A, -B, -C, -DRB1, and -DQB1 genes of each subject were determined by direct DNA sequencing according to proven protocols (Biowitthus, Seoul, Korea). ) Was determined.
  • HLA-C * 07: 01 and HLA-C * 07: 06 were identified by sequencing exon 5 and exon 6.
  • HLA-A, -B and -C belong to HLA class I and HLA-DRB1 and -DQB1 belong to HLA class II.
  • Fisher's exact assay was used to compare the frequency of HLA alleles or haplotypes between autoimmune encephalitis patients and normal controls. The association between HLA data and autoimmune encephalitis was expressed in odds ratio and 95% confidence intervals. For the comparison of HLA alleles and haplotypes, the Bonferroni method using multiple comparisons was used. The p-value determined by Fisher's exact assay is corrected by multiplying the total number of alleles detected at each locus, with 24 HLA-A, 44 B, 22 C, and 33 DRB1, DQB1 has 15 alleles. Only two-tailed corrections below 0.05 were considered statistically significant. Haplotypes were measured using Arlequin software version 3.5.2.2.
  • the linkage disequilibrium value (LD) of the two-locus haplotype is the difference between the frequency of the measured haplotype and the product of the two alleles.
  • the relative linkage disequilibrium value (RLD) is defined as the ratio of the absolute value of the maximum possible value (LD ⁇ 0) or the minimum possible value (LD ⁇ 0) among the values that the LD may have.
  • SPSS software version 21.0 SPSS, Chicago, IL, USA).
  • NetMHC 4.0 was used to predict HLA class I peptide binding
  • ProPred and NetMHCII 2.2 were used to predict HLA class II peptide binding.
  • NetMHC 4.0, ProPred and NetMHCII 2.2 are known to be the most accurate methods for predicting binding of Major histocompatibility complex (MHC) class I and II peptides.
  • ProPred and the two NetMHC servers each use different algorithms called quantitative matrices and artificial neural networks.
  • the LGI1 protein sequence obtained from UniProt accession number O95970 was submitted to each server.
  • HLA-A alleles 18 HLA-B alleles, and 10 HLA-C alleles were collected from the overlap between alleles detected in the experiment and alleles provided by the NetMHC server, and HLA class I It was used in the analysis to predict the binding of.
  • HLA-DR alleles from the ProPred server eleven HLA-DR alleles and six HLA-DQ alleles from the NetMHCII server were used for the comparison to predict binding of HLA class II.
  • HLA genotyping was performed in 11 anti-LGI1 encephalitis patients and 17 anti-NMDAR encephalitis patients.
  • the clinical characteristics of the patients and the distribution of HLA alleles are shown in Tables 1, 2 and 3 below.
  • Table 1 shows the clinical characteristics such as age, symptoms, cerebrospinal fluid (CSF, cerebrospinal fluid), and brain MRI in the anti-LGI1 encephalitis patients and anti-NMDAR encephalitis patients participated in the experiment in terms of the number and percentage of patients. will be.
  • CSF cerebrospinal fluid
  • Pleocytosis in CSF * was defined as the leukocytes 5 / ⁇ l
  • CSF protein increase was defined as 45 mg / dl.
  • Table 2 above shows the clinical symptoms of 11 anti-LGI encephalitis patients and the clinical symptoms of 17 anti-NMDAR encephalitis patients.
  • the * in Table 2 means the previous rib fracture, ** means to be hospitalized from the beginning of the onset.
  • Table 3 shows the HLA genotyping results of 11 anti-LGI1 encephalitis patients and 17 anti-NMDAR encephalitis patients. At this time, the P value of the underlined allele indicates that it is less than 0.05.
  • Table 4 shows the frequency distribution of selected alleles or carrier frequency of selected haplotypes in the epilepsy patient control group, the normal control group and the autoimmune encephalitis patient group.
  • Haplotype # 1 * means HLA-DRB1 * 07: 01-DQB1 * 02: 02
  • Haplotype # 2 * means HLA-C * 07: 06-B * 44: 03
  • Haplotype # 3 * Means HLA-C * 07: 06-B * 44: 03 * DRB1 * 07: 01-DQB1 * 02: 02.
  • Table 5 shows a statistical analysis of alleles or haplotypes selected from the epilepsy patient control group and the normal control group compared to the autoimmune encephalitis patients experimental group.
  • Haplotype # 1 * means HLA-DRB1 * 07: 01-DQB1 * 02: 02
  • Haplotype # 2 * means HLA-C * 07: 06-B * 44: 03
  • Haplotype # 3 * Means HLA-C * 07: 06-B * 44: 03 * DRB1 * 07: 01-DQB1 * 02: 02.
  • the frequency of the HLA alleles obtained from Tables 4 and 5 is shown as a bar graph in FIG. 1.
  • FIG. 1A shows a bar graph of the frequency of HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotypes.
  • the horizontal axis of the bar graph shows the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group, and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency.
  • HLA-DRB1 * 07: 01 allele and HLA-DQB1 * 02: 02 allele had both HLA-DRB1 * 07: 01 allele and HLA-DQB1 * 02: 02 allele .
  • the frequency of HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype was 9% in the epilepsy group and 12% in the healthy control group. .
  • This confirms that the frequency of the HLA-DRB1 * 07: 01 allele and HLA-DQB1 * 02: 02 allele is important in the association between haplotype and anti-LGI1 encephalitis (** p ⁇ 0.001, OR 106.7).
  • vs epilepsy patients, ** p ⁇ 0.001, OR 73.6 vs normal controls).
  • 1B shows the frequency of the HLA-DRB1 * 07: 01 allele in a bar graph.
  • the horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p ⁇ 0.001).
  • 1C shows the frequency of the HLA-DQB1 * 02: 02 allele in a bar graph.
  • the horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p ⁇ 0.001).
  • both the HLA-DRB1 * 07: 01 allele and the HLA-DQB1 * 02: 02 allele are independently associated with anti-LGI1 encephalitis You can see this.
  • 1D shows a bar graph of the frequency of the HLA-B * 44: 03 allele.
  • the horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p ⁇ 0.001).
  • Figure 1 E shows the frequency of the HLA-C * 07: 06 allele in a bar graph.
  • the horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p ⁇ 0.001).
  • the frequency of the HLA-B * 44: 03 and HLA-C * 07: 06 alleles among the subtypes of HLA class I were all high in the experimental group of patients with anti-LGI1 encephalitis. And it was confirmed that the frequency higher than that in the normal control group (both p ⁇ 0.001).
  • the HLA-B * 44: 03 allele was found in 8 anti-LGI1 encephalitis patients, 73% of 11 anti-LGI1 encephalitis patients, and the HLA-C * 07: 06 allele was found in 11 anti-LGI1 encephalitis patients Seven of these patients were found in anti-encephalitis patients.
  • FIG. 1F shows a bar graph of the frequency of HLA-C * 07: 06-B * 44: 03-DRB1 * 07: 01-DQB1 * 02: 02 haplotype.
  • the horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p ⁇ 0.001).
  • HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype of HLA class II shows the strongest susceptibility to anti-LGI1 encephalitis
  • HLA-B * 44: 03 allele and HLA of HLA class I -C * 07: 06 allele also showed significant association with anti-LGI1 encephalitis.
  • the anti-NMDAR encephalitis experimental group showed no special association with any HLA allele. It can be seen from Table 4 and Table 5 that the HLA-A * 02: 06 and HLA-B * 40: 06 alleles show a high frequency in patients with anti-NMDAR encephalitis, but the difference is not statistically significant. Can be.
  • HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype which was frequently seen in patients with anti-LGI1 encephalitis, was observed only in one of 17 anti-NMDAR encephalitis patients.
  • the HLA-B * 44: 03 allele was observed in two anti-NMDAR encephalitis patients, and the HLA-C * 07: 06 allele was observed in one anti-NMDAR encephalitis patient.
  • the HLA peptide binding prediction algorithm established the association between HLA allele subtypes and anti-LGI1 encephalitis. Using algorithms using quantitative matrices and artificial neural networks, it was expected that of all available HLA class II alleles, the HLA-DRB1 * 07: 01 allele had the highest affinity for the LGI1 sequence. Predicted by an algorithm using quantitative matrix (ProPred), the HLA-DRB1 * 07: 01 allele predicted the highest score of 9.4, out of 14 HLA-DR alleles, and the target sequence was 'FLFTPSLQL' and LGI1. The 87th amino acid position from the N-terminus of the protein.
  • the HLA-DRB1 * 07: 01 allele is the highest with the same key sequences 'FLFTPSLQL' and 3.7 nM It was predictable to have affinity.
  • the 'FLFTPSLQL' sequence which is part of the Leucine-rich repeat domain of the LGI1 protein, is likely to be a ligand of the HLA-DRB1 * 07: 01 allele.
  • the HLA-A * 31: 01 allele was predicted to have the highest affinity of 2.4 nM. In this case, the lower the affinity in binding prediction, the higher the affinity.
  • it is not logical to directly compare the binding affinity between HLA class I and II alleles there are 13 HLA-A alleles, 18 HLA-B alleles and 10 except for the HLA-A * 31: 01 allele.
  • HLA-C * 07: 06 allele None of the HLA-C alleles predicted to have higher affinity than the HLA-DRB1 * 07: 01 allele.
  • the affinity between the HLA-B * 44: 03 allele and the LGI1 protein was predicted to be 145.32 nM, but the HLA-C * 07: 06 allele was unpredictable.
  • a computer-aided docking program combines a heterodimer consisting of the 'FLFTPSLQL' sequence, the HLA-DRB1 * 07: 01 allele and the HLA-DRA1 * 01: 01 allele with a -12.9 kcal / mol docking score ( ⁇ G). Predicted to be.
  • Figure 3 shows that the HLA-DRB1 * 07: 01 allele, the heterodimer of the HLA-DRA1 * 01: 01 allele and the 'FLFTPSLQL' sequence of the LGI1 fragment are bound.
  • the distribution of HLA alleles in anti-LGI1 encephalitis characterized by haplotype can be found to be generally uniform.

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Abstract

The present invention relates to a method for providing autoimmune encephalitis disease-related information, comprising the steps of: obtaining a biological sample isolated from a subject; identifying an HLA genotype from the biological sample; and providing autoimmune encephalitis-related information according to the HLA genotype.

Description

HLA 유전형 검사를 이용한 자가면역성 뇌염 타입 판별 방법Autoimmune Encephalitis Type Discrimination Using HLA Genotyping
본 발명은 HLA 유전형 검사를 이용하여 자가면역성 뇌염의 타입을 판단하는 방법에 관한 것이다.The present invention relates to a method of determining the type of autoimmune encephalitis using HLA genotyping.
뇌염은 정확한 진단과 적절한 치료가 신속하게 이뤄지지 않는 경우, 심각한 후유 장애를 남기게 되는 신경계 질환이다. 뇌염은 크게 감염성 뇌염과 자가면역성 뇌염으로 나눌 수 있다.Encephalitis is a neurological disorder that leaves serious aftereffect disorders if the correct diagnosis and proper treatment are not made promptly. Encephalitis can be roughly divided into infectious encephalitis and autoimmune encephalitis.
자가면역성 뇌염은 최근 약 10년 사이에 새롭게 밝혀지게 된 병으로, 전체 뇌염 환자의 약 20~30%가 자가면역성 뇌염에 해당된다. 자가면역성 뇌염의 경우, 통상적으로 자가항체 검출을 통해 진단하게 되나, 원인 항체의 종류가 다양하고, 계속해서 새로운 항체가 발굴되고 있어, 기존의 항체 검사 키트만으로는 정확한 진단이 어려운 측면이 존재한다.Autoimmune encephalitis is a newly discovered disease in recent decades. About 20-30% of all encephalitis patients are autoimmune encephalitis. In the case of autoimmune encephalitis, diagnosis is usually made through autoantibody detection, but a variety of causative antibodies and new antibodies continue to be discovered, which makes it difficult to accurately diagnose existing antibody test kits alone.
이처럼, 기존의 진단 방법으로는 감염성 뇌염 및 자가면역성 뇌염의 감별 및 정확한 진단을 하는데 어려움이 존재하여 보다 빠르고 정확한 뇌염 질환 관련 정보 제공 방법 및 정보 제공 장치가 필요한 실정이다.As such, existing diagnostic methods have difficulty in discriminating and accurately detecting infectious encephalitis and autoimmune encephalitis, and thus require a faster and more accurate method for providing information related to encephalitis disease and a device for providing information.
본 발명은 HLA 유전형 검사를 통해 자가면역성 뇌염의 세부 타입을 판단하는 방법을 제공하는데 그 목적이 있다.An object of the present invention is to provide a method for determining the detailed type of autoimmune encephalitis through HLA genotyping.
본 발명에 따른 자가면역성 뇌염 질환에 관한 정보 제공 방법은 검체로부터 분리된 생물학적 시료를 획득하는 단계, 상기 생물학적 시료로부터 HLA 유전형을 확인하는 단계 및 상기 HLA 유전형에 따른 자가면역성 뇌염 질환과 관련된 정보를 제공하는 단계를 포함한다.Method for providing information about autoimmune encephalitis disease according to the present invention comprises the steps of obtaining a biological sample isolated from the sample, identifying the HLA genotype from the biological sample and provides information related to the autoimmune encephalitis disease according to the HLA genotype It includes a step.
또한, 본 발명에 따른 상기 정보를 제공하는 단계는, 상기 확인된 HLA 유전형과 기준 대립유전자의 유전형과의 비교에 따라 자가면역성 뇌염 질환과 관련된 정보를 제공하는 단계를 포함하는 것을 특징으로 한다.The providing of the information according to the present invention may include providing information related to autoimmune encephalitis disease according to a comparison between the identified HLA genotype and the genotype of the reference allele.
또한, 본 발명에 따른 상기 기준 대립유전자는 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지인 것을 특징으로 한다.In addition, the reference allele according to the present invention is the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele It is characterized by any one of.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환과 관련된 정보는, 자가면역성 뇌염 질환의 발생 가능성을 포함하는 것을 특징으로 한다.In addition, the information related to the autoimmune encephalitis disease according to the present invention is characterized by including the possibility of the occurrence of autoimmune encephalitis disease.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환의 발생 가능성은 상기 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 적어도 하나 이상의 대립유전자가 상기 생물학적 시료 내에 존재하는 경우, 자가면역성 뇌염 질환의 발생 가능성이 더 높은 것을 특징으로 한다.In addition, the possibility of occurrence of the autoimmune encephalitis disease according to the present invention is the HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * If at least one allele of the 07:06 allele is present in the biological sample, the likelihood of developing an autoimmune encephalitis disease is higher.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환은 항-LGI1 뇌염 질환 및 항-NMDAR 뇌염 질환을 포함한다.In addition, the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
또한, 본 발명에 따른 상기 생물학적 시료는 활액, 혈액, 림프, 뇨, 누액, 타액 또는 분변으로부터 선택된 어느 하나인 것을 특징으로 한다.In addition, the biological sample according to the invention is characterized in that any one selected from synovial fluid, blood, lymph, urine, tear fluid, saliva or feces.
또한, 본 발명에 따른 상기 생물학적 시료의 존재 여부 확인은 HLA-genotyping, serotyping 검정법 또는 HLA 미량림프구 세포장애(HLA microcytotoxicity) 검정법으로부터 선택되는 어느 하나의 방법에 의한 것을 특징으로 한다.In addition, the presence of the biological sample according to the present invention is characterized by any one method selected from HLA-genotyping, serotyping assay or HLA microcytotoxicity assay.
그리고, 본 발명의 실시 예에 따른 자가면역성 뇌염 질환 예측용 키트는 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지 대립유전자를 탐지하기 위한 수단을 포함한다.In addition, the kit for predicting autoimmune encephalitis disease according to an embodiment of the present invention is HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * 07: 06 Includes means for detecting any of the alleles.
또한, 본 발명에 따른 상기 자가 면역 뇌염 질환은 항-LGI1 뇌염 질환 및 항-NMDAR 뇌염 질환을 포함한다.In addition, the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
본 발명에 따른 자가면역성 뇌염 질환에 관한 정보 제공 방법은 HLA 유전형 검사를 이용하여 자가면역성 뇌염 질환에 관한 정보를 제공함으로써, 보다 정확하고, 빠르게 자가면역성 뇌염 질환의 신속한 치료가 가능한 효과가 있다.The method for providing information on autoimmune encephalitis disease according to the present invention provides an information on autoimmune encephalitis disease using HLA genotyping, thereby providing a more accurate and rapid treatment of autoimmune encephalitis disease.
도 1은 항-LGI1 뇌염 및 항-NMDAR 뇌염을 포함하는 자가면역성 뇌염 환자 실험군과 뇌전증 환자 및 일반인을 포함하는 대조군에서 HLA-DRB1*07:01-DQB1*02:02, HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자, HLA-C*07:06 대립유전자 및 HLA-C*07:06-B*44:03-DRB1*07:01-DQB1*02:02의 보인자 빈도(carrier frequency)를 막대 그래프로 나타낸 것이다.FIG. 1 shows HLA-DRB1 * 07: 01-DQB1 * 02: 02, HLA-DRB1 * 07 in an experimental group of autoimmune encephalitis patients including anti-LGI1 encephalitis and anti-NMDAR encephalitis and a control group including epilepsy patients and the general population. : 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele, HLA-C * 07: 06 allele and HLA-C * 07: 06-B * 44: 03-DRB1 The carrier frequency of * 07: 01-DQB1 * 02: 02 is shown in a bar graph.
도 2는 항-LGI1 뇌염 환자에게서 발견되는 HLA 대립유전자를 나타낸 것이다.2 shows the HLA alleles found in patients with anti-LGI1 encephalitis.
도 3은 LGI1 조각의 일부분과 HLA-DRB1*07:01-DRA1*01:01 헤테로다이머가 결합되는 것을 나타낸 것이다.Figure 3 shows that a portion of the LGI1 fragment and the HLA-DRB1 * 07: 01-DRA1 * 01: 01 heterodimer is bound.
이하, 이하 본 발명의 바람직한 실시를 보다 상세하게 설명한다. 그러나 본 발명은 다수의 상이한 형태로 구현될 수 있고, 기술된 실시예에 제한되지 않음을 이해하여야 한다. 하기에 설명되는 본 발명의 실시예는 당업자에게 본 발명의 사상을 충분하게 전달하기 위한 것임에 유의하여야 한다.EMBODIMENT OF THE INVENTION Hereinafter, preferable implementation of this invention is demonstrated in detail below. It should be understood, however, that the present invention may be embodied in many different forms and should not be limited to the described embodiments. It should be noted that the embodiments of the present invention described below are intended to sufficiently convey the spirit of the present invention to those skilled in the art.
"Human leukocyte antigen(HLA)"는 인간 백혈구 항원을 지칭한다. HLA는 염색체 6p21.31 상에 위치하고 반수체형에 좌우되는 약 3.6 Mbp의 영역을 포함한다. HLA 분자는 3개의 유전자군, HLA 부류 I, HLA 부류 II 및 HLA 부류 III 유전자에 의해 코딩된다. HLA 부류 I 단백질은 유전자 HLA-A, HLA-B, 및 HLA-C에 의해 코딩된다. HLA 대립유전자 명명은 HLA 시스템의 인자에 대한 2010 WHO 명명 위원회에 따라 행해진다. 몇몇 자릿수가 HLA 대립유전자를 확인하는데 사용된다. 특정한 HLA 유전자좌(HLA-A, HLA-B, HLA-C, HLA-DR, HLA-DQ 및 HLA-DP)는 항원의 혈청학적 등가물을 할당하는 두 자리 숫자로부터 기호 *에 의해 분리된다."Human leukocyte antigen (HLA)" refers to human leukocyte antigen. HLA is located on chromosome 6p21.31 and comprises a region of about 3.6 Mbp depending on haplotype. HLA molecules are encoded by three gene groups, HLA class I, HLA class II and HLA class III genes. HLA class I proteins are encoded by the genes HLA-A, HLA-B, and HLA-C. HLA allele naming is done according to the 2010 WHO Naming Committee for Factors in the HLA System. Several digits are used to identify the HLA allele. Certain HLA loci (HLA-A, HLA-B, HLA-C, HLA-DR, HLA-DQ, and HLA-DP) are separated by the symbol * from the two digits assigning serological equivalents of the antigen.
일례로, HLA-A*2402는 HLA-A 유전자좌로부터의 대립유전자 군을 나타낸다. "두 자릿수" 해상도는 유사한 항원을 코딩하거나 또는 높은 서열 상동성을 공유하는 다양한 대립유전자로 구성된 대립유전자 군을 나타낸다. 이어서 콜론 및/또는 두 자리 또는 세 자리 숫자가 이어지고, 이는 특정한 코딩 단백질을 확인한다(이 수준은 "하위유형" 또는 "대립유전자 하위유형"을 설명함). 일례로, HLA-A*2402는 특정한 아미노산 서열을 갖는 HLA-A를 코딩하는 대립유전자 군 내의 특정한 대립유전자이다. 이러한 "네 자릿수" 해상도는 코딩된 폴리펩티드 산물의 아미노산 서열에서의 차이를 유발하는 대립유전자 군 내의 특정한 게놈 서열 변이를 나타낸다. 대립유전자는 대립유전자의 코딩 영역 내의 동의성 DNA 치환을 나타내거나 또는 비-코딩 영역 내의 DNA 차이를 나타내는 추가의 콜론 및 숫자를 사용하여 추가로 정의될 수 있다(9자릿수 수준).In one example, HLA-A * 2402 represents a group of alleles from the HLA-A locus. "Two digit" resolution refers to a group of alleles composed of various alleles that encode similar antigens or share high sequence homology. This is followed by a colon and / or a two or three digit number, which identifies a particular coding protein (this level describes a "subtype" or "allele subtype"). In one example, HLA-A * 2402 is a specific allele within a group of alleles encoding HLA-A having a specific amino acid sequence. This “four digit” resolution represents a particular genomic sequence variation in the allele family that results in a difference in amino acid sequence of the encoded polypeptide product. Alleles can be further defined using additional colons and numbers that indicate synonymous DNA substitutions within the coding region of the allele or indicate DNA differences within the non-coding regions (9 digit level).
일례로, "HLA-A*2402 대립유전자 군"은 HLA-A24 혈청학적 항원을 코딩하거나 또는 높은 서열 상동성을 공유하는 다양한 대립유전자로 구성되는 HLA-A 유전자좌로부터의 대립유전자 군(또는 유형)을 지칭한다.In one example, the “HLA-A * 2402 allele group” is an allele group (or type) from the HLA-A locus that consists of various alleles that encode HLA-A24 serological antigens or share high sequence homology. Refers to.
"HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 산물"은 HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 핵산 산물 및 HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 폴리펩티드 산물을 포함한다."Product of HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 allele" means HLA-DRB1 * 07: 01, HLA-DQB1 * Nucleic acid products of 02:02, HLA-B * 44: 03 or HLA-C * 07: 06 alleles and HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA -Polypeptide product of the C * 07: 06 allele.
"HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 폴리펩티드 산물"은 HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자에 의해 코딩되는 폴리펩티드, HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자에 의해 코딩되는 폴리펩티드의 단편 및 각각의 혈청학적 항원을 지칭한다. "HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 핵산 산물"은 HLA-DRB1*07:01, HLA-DQB1*02:02, HLA-B*44:03 또는 HLA-C*07:06 대립유전자의 임의의 DNA(게놈, cDNA 등) 또는 RNA 산물(예를 들어, 프리-mRNA, mRNA, 마이크로 RNA 등) 및 그의 단편을 지칭한다."Polypeptide products of HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 alleles" means HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, polypeptide encoded by HLA-B * 44: 03 or HLA-C * 07: 06 allele, HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or a fragment of the polypeptide encoded by the HLA-C * 07: 06 allele and each serological antigen. "Nucleic acid product of HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, HLA-B * 44: 03 or HLA-C * 07: 06 allele" means HLA-DRB1 * 07: 01, HLA-DQB1 * 02: 02, any DNA (genome, cDNA, etc.) or RNA product (e.g., pre-mRNA, mRNA, microRNA, etc.) of the HLA-B * 44: 03 or HLA-C * 07: 06 allele And fragments thereof.
본 발명에 따른 검체란, 포유류를 포함하며, 바람직하게 인간이다. 보다 바람직하게, 인종 및 민족 간의 약물 반응과 관련된 유전자 변이 및 그 빈도를 고려할 수 있으며, 이에 따라 검체는 한국인일 수 있다.Specimens according to the invention include mammals, preferably humans. More preferably, genetic variation and frequency of the drug response between races and ethnicities may be considered, and thus the specimen may be Korean.
생물학적 시료는 이에 제한되지 않으나, 활액, 혈액, 림프, 뇨, 누액, 타액, 구강 점막세포 또는 분변으로부터 선택되는 것이 바람직하다.The biological sample is not limited thereto, but is preferably selected from synovial fluid, blood, lymph, urine, tear fluid, saliva, oral mucosal cells or feces.
본 발명에 따른 자가면역성 뇌염 질환에 관한 정보 제공 방법은 검체로부터 분리된 생물학적 시료를 획득하는 단계, 상기 생물학적 시료로부터 HLA 유전형을 확인하는 단계 및 상기 HLA 유전형에 따른 자가면역성 뇌염 질환과 관련된 정보를 제공하는 단계를 포함한다.Method for providing information about autoimmune encephalitis disease according to the present invention comprises the steps of obtaining a biological sample isolated from the sample, identifying the HLA genotype from the biological sample and provides information related to the autoimmune encephalitis disease according to the HLA genotype It includes a step.
또한, 본 발명에 따른 상기 정보를 제공하는 단계는, 상기 확인된 HLA 유전형과 기준 대립유전자의 유전형과의 비교에 따라 자가면역성 뇌염 질환과 관련된 정보를 제공하는 단계를 포함하는 것을 특징으로 한다.The providing of the information according to the present invention may include providing information related to autoimmune encephalitis disease according to a comparison between the identified HLA genotype and the genotype of the reference allele.
또한, 본 발명에 따른 상기 기준 대립유전자는 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지인 것을 특징으로 한다.In addition, the reference allele according to the present invention is the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele It is characterized by any one of.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환과 관련된 정보는, 자가면역성 뇌염 질환의 발생 가능성을 포함하는 것을 특징으로 한다.In addition, the information related to the autoimmune encephalitis disease according to the present invention is characterized by including the possibility of the occurrence of autoimmune encephalitis disease.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환의 발생 가능성은 상기 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 적어도 하나 이상의 대립유전자가 상기 생물학적 시료 내에 존재하는 경우, 자가면역성 뇌염 질환의 발생 가능성이 더 높은 것을 특징으로 한다.In addition, the possibility of occurrence of the autoimmune encephalitis disease according to the present invention is the HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * If at least one allele of the 07:06 allele is present in the biological sample, the likelihood of developing an autoimmune encephalitis disease is higher.
또한, 본 발명에 따른 상기 자가면역성 뇌염 질환은 항-LGI1 뇌염 질환 및 항-NMDAR 뇌염 질환을 포함한다.In addition, the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
또한, 본 발명에 따른 상기 생물학적 시료는 활액, 혈액, 림프, 뇨, 누액, 타액 또는 분변으로부터 선택된 어느 하나인 것을 특징으로 한다.In addition, the biological sample according to the invention is characterized in that any one selected from synovial fluid, blood, lymph, urine, tear fluid, saliva or feces.
또한, 본 발명에 따른 상기 생물학적 시료의 존재 여부 확인은 HLA-genotyping, serotyping 검정법 또는 HLA 미량림프구 세포장애(HLA microcytotoxicity) 검정법으로부터 선택되는 어느 하나의 방법에 의한 것을 특징으로 한다.In addition, the presence of the biological sample according to the present invention is characterized by any one method selected from HLA-genotyping, serotyping assay or HLA microcytotoxicity assay.
그리고, 본 발명의 실시 예에 따른 자가면역성 뇌염 질환 예측용 키트는 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지 대립유전자를 탐지하기 위한 수단을 포함한다.In addition, the kit for predicting autoimmune encephalitis disease according to an embodiment of the present invention is HLA-DRB1 * 07: 01 allele, HLA-DQB1 * 02: 02 allele, HLA-B * 44: 03 allele and HLA-C * 07: 06 Includes means for detecting any of the alleles.
또한, 본 발명에 따른 상기 자가 면역 뇌염 질환은 항-LGI1 뇌염 질환 및 항-NMDAR 뇌염 질환을 포함한다.In addition, the autoimmune encephalitis diseases according to the present invention include anti-LGI1 encephalitis diseases and anti-NMDAR encephalitis diseases.
본 발명의 실시예를 위해 사용된 실험 단계는 하기와 같이 설명될 수 있다.The experimental steps used for the examples of the present invention can be described as follows.
1. 대상 선정1. Target Selection
2015년 6월부터 2015년 12월까지 특정 병원의 신경과에 방문하거나 등록된 항-LGI1 또는 항-NMDAR 뇌염 환자를 대상으로 실험을 수행하였다. 임상적으로 의심이 가고, 하기에 설명되는 항체 진단법을 기준으로 하여 뇌염 환자를 진단하였다. 먼저, 자가 면역 뇌염 환자는 기억장애, 의식장애 및 비정상적인 행동을 포함하는 전형적인 증상을 급성으로 보이는 환자로 정의했다. 감염과 같은 아급성 뇌염의 선택적 원인들은 제외하였다.From June 2015 to December 2015, experiments were performed in patients with anti-LGI1 or anti-NMDAR encephalitis who visited or enrolled in a neurology department at a particular hospital. Clinically suspected, encephalitis patients were diagnosed based on the antibody diagnostics described below. First, patients with autoimmune encephalitis were defined as patients with acute appearance of typical symptoms including memory impairment, consciousness impairment and abnormal behavior. Selective causes of subacute encephalitis, such as infection, were excluded.
다음으로, 환자들의 혈청과 뇌 척수액을 쥐의 뇌와 함께 면역염색법을 이용하여 뇌 활성 자가 항체가 존재하는지 스크리닝하였다. 그 후, 항-NMDAR, LGI1, CASPR2(Contactin-associated protein-like 2), AMPA1, AMPA2 및 GABAB-R(γ-aminobutyric-acid type B receptor)를 포함하는 시냅틱-자가 항체를 세포를 기초로 하는 면역세포화학 키트(Euroimmun AG, Lubeck, Germany)로 테스트하였다. 항-Hu, Yo, Ri, Ma2, CV2/CRMP5 및 암피피신(Amphiphysin)을 포함하는 전형적인 방종양성(paraneoplastic) 자가 항체는 면역블랏팅 키트(Euroimmun)를 사용하여 테스트되었다. 등록된 환자의 인구학적 정보, 임상 정보 및 진단 결과를 분석하였다.Next, the serum and cerebrospinal fluid of the patients were screened for the presence of brain activating autoantibodies using immunostaining with the brain of rats. Thereafter, cell-based synaptic-autoantibodies comprising anti-NMDAR, LGI1, CASPR2 (Contactin-associated protein-like 2), AMPA1, AMPA2, and GABAB-R (γ-aminobutyric-acid type B receptors) Test with immunocytochemistry kit (Euroimmun AG, Lubeck, Germany). Typical paraneoplastic autoantibodies, including anti-Hu, Yo, Ri, Ma2, CV2 / CRMP5 and Amphiphysin, were tested using an immunoblotting kit (Euroimmun). Demographic, clinical and diagnostic results of enrolled patients were analyzed.
2. HLA 유전형 분석2. HLA Genotyping
항-LGI1 뇌염 환자 또는 항-NMDAR 뇌염 환자의 말초 혈액으로부터 genomic DNA를 추출하여 상기 기재된 방법으로 HLA 유전형을 분석하였다. 각 대상의 HLA-A, -B, -C, -DRB1 및 -DQB1 유전자의 유전형은 입증된 프로토콜(Biowitthus, Seoul, Korea)을 따라 직접적 DNA 서열 분석을 통해 대립유전자의 level(농도, 수준, 수치)이 결정되었다. 또한, HLA-C*07:01 및 HLA-C*07:06은 엑손 5 및 엑손 6을 시퀀싱하여 식별하였다. HLA-A, -B 및 -C는 HLA class Ⅰ에 속하고, HLA-DRB1 및 -DQB1은 HLA class Ⅱ에 속한다. 실험을 위하여, 2개의 대조군을 설정했고, 항-뇌전증 약물의 부작용으로 인하여 병원을 방문한 뇌전증 환자들의 HLA 유전형 분석 데이터를 뇌전증 환자 대조군과 비교하였다. 또한, 한국인 집단에서 이전에 보고된 HLA 대립유전자의 빈도를 정상인 대조군의 값으로 사용하였다.Genomic DNA was extracted from the peripheral blood of anti-LGI1 encephalitis patients or anti-NMDAR encephalitis patients and analyzed for HLA genotype by the method described above. The genotypes of the HLA-A, -B, -C, -DRB1, and -DQB1 genes of each subject were determined by direct DNA sequencing according to proven protocols (Biowitthus, Seoul, Korea). ) Was determined. In addition, HLA-C * 07: 01 and HLA-C * 07: 06 were identified by sequencing exon 5 and exon 6. HLA-A, -B and -C belong to HLA class I and HLA-DRB1 and -DQB1 belong to HLA class II. For the experiment, two controls were set up and the HLA genotyping data of epilepsy patients who visited the hospital due to the side effects of anti-epilemic drugs were compared with the epilepsy patient controls. In addition, the frequency of the previously reported HLA allele in the Korean population was used as the value of the normal control group.
3. 통계학적 분석3. Statistical Analysis
Fisher 정확 검정법을 이용하여, 자가 면역 뇌염 환자와 정상인 대조군 간의 HLA 대립유전자 또는 일배체형의 빈도를 비교하였다. HLA 데이터와 자가면역성 뇌염 간의 연관도를 odds ratio 및 95% 신뢰 구간으로 표현하였다. HLA 대립유전자와 일배체형의 비교를 위하여, 다중 비교를 통한 Bonferroni 방법을 사용하였다. Fisher 정확 검정법에 의해 결정된 p 값은 각 유전자 좌위에서 검출된 대립 유전자의 총 수를 곱하여 보정하며, HLA-A는 24개, -B는 44개, -C는 22개, -DRB1은 33개, -DQB1은 15개의 대립유전자를 가진다. 0.05 이하로 보정된 p 값(two-tailed)만 통계적으로 유의하다고 간주되었다. 일배체형은 Arlequin 소프트웨어 버전 3.5.2.2.를 사용하여 측정되었다. 2-유전자 일배체형(two-locus haplotype)의 연관 불균형 값(LD, linkage disequilibrium value)은 측정된 일배체형의 빈도와 2가지 대립유전자의 생산물 간의 차이이다. 상대적 연관 불균형 값(RLD, relative linkage disequilibrium value)은 LD가 가질 수 있는 값 중 가능한 최대값(LD≥0) 또는 가능한 최소값(LD<0)의 절대값의 비로 정의된다. 통계학적 분석은 SPSS 소프트웨어 버전 21.0(SPSS, Chicago, IL, USA)을 사용하여 수행되었다.Fisher's exact assay was used to compare the frequency of HLA alleles or haplotypes between autoimmune encephalitis patients and normal controls. The association between HLA data and autoimmune encephalitis was expressed in odds ratio and 95% confidence intervals. For the comparison of HLA alleles and haplotypes, the Bonferroni method using multiple comparisons was used. The p-value determined by Fisher's exact assay is corrected by multiplying the total number of alleles detected at each locus, with 24 HLA-A, 44 B, 22 C, and 33 DRB1, DQB1 has 15 alleles. Only two-tailed corrections below 0.05 were considered statistically significant. Haplotypes were measured using Arlequin software version 3.5.2.2. The linkage disequilibrium value (LD) of the two-locus haplotype is the difference between the frequency of the measured haplotype and the product of the two alleles. The relative linkage disequilibrium value (RLD) is defined as the ratio of the absolute value of the maximum possible value (LD≥0) or the minimum possible value (LD <0) among the values that the LD may have. Statistical analysis was performed using SPSS software version 21.0 (SPSS, Chicago, IL, USA).
4. HLA 펩타이드 결합 예측4. Prediction of HLA Peptide Binding
HLA class I 펩타이드의 결합을 예측하기 위하여 NetMHC 4.0을 사용했고, HLA class Ⅱ 펩타이드의 결합을 예측하기 위하여 ProPred와 NetMHCⅡ 2.2를 사용하였다. NetMHC 4.0, ProPred 및 NetMHCⅡ 2.2는 MHC(Major histocompatibility complex, 조직 적합성 복합체) class I 및 Ⅱ 펩타이드의 결합을 예측하는 가장 정확한 방법으로 알려져 있다. ProPred 및 2개의 NetMHC 서버는 각각 양적 행렬과 인공 신경망이라는 서로 다른 알고리즘을 사용한다. UniProt accession number O95970에서 얻은 LGI1 단백질 서열을 각각의 서버에 제출했다. 14개의 HLA-A 대립유전자, 18개의 HLA-B 대립유전자, 10개의 HLA-C 대립유전자는 실험에서 검출된 모든 대립유전자와 NetMHC 서버로부터 제공된 대립유전자 사이에서 중첩된 것들로부터 수집되었고, HLA class Ⅰ의 결합을 예측하는 분석에 사용되었다. ProPred 서버로부터 제공된 14개의 HLA-DR 대립유전자와 NetMHCⅡ 서버로부터 제공된 11개의 HLA-DR 대립유전자와 6개의 HLA-DQ 대립유전자는 HLA class Ⅱ의 결합을 예측하는 비교에 사용되었다.NetMHC 4.0 was used to predict HLA class I peptide binding, and ProPred and NetMHCII 2.2 were used to predict HLA class II peptide binding. NetMHC 4.0, ProPred and NetMHCII 2.2 are known to be the most accurate methods for predicting binding of Major histocompatibility complex (MHC) class I and II peptides. ProPred and the two NetMHC servers each use different algorithms called quantitative matrices and artificial neural networks. The LGI1 protein sequence obtained from UniProt accession number O95970 was submitted to each server. 14 HLA-A alleles, 18 HLA-B alleles, and 10 HLA-C alleles were collected from the overlap between alleles detected in the experiment and alleles provided by the NetMHC server, and HLA class I It was used in the analysis to predict the binding of. Fourteen HLA-DR alleles from the ProPred server and eleven HLA-DR alleles and six HLA-DQ alleles from the NetMHCII server were used for the comparison to predict binding of HLA class II.
5. in silico Docking5.in silico Docking
HLA-DRB1*07:01 대립유전자와 LGI1 조각의 예상되는 결합을 확인하기 위하여 컴퓨터를 이용하여 도킹을 수행하였다. HLA-DRB1*07:01의 결정학상의 구조가 실험적으로 정해져 있지 않기 때문에 HLA-DRB1*01:01(Protein Data Bank code 3PDO)의 주형 구조로부터 Swiss-Model 및 UCSF Chimera를 이용하여 만들어낸 상동성 모델인 HLA-DRB1*07:01을 포함하는 헤테로다이머(heterodimer, 이종이량체) 구조를 사용하였다. PEPstrMOD 서버로부터 LGI1 조각의 3차 구조를 예측할 수 있었다. AutuDock Tools 1.5.6rc3을 사용하여 수소를 추가하였고, Gasteiger charge를 지정하였으며, 단백질에 회전 가능한 결합을 지정하였다. AutoDock Vina 소프트웨어를 사용하여 전체적인 펩타이드 결합의 틈과 비틀림 수를 0으로 설정한 후, HLA-DRB1*07:01 대립유전자에 LGI1 조각을 도킹하는 것을 수행하였다.Computerized docking was performed to confirm the expected binding of the HLA-DRB1 * 07: 01 allele with the LGI1 fragment. Since the crystallographic structure of HLA-DRB1 * 07: 01 is not determined experimentally, homology models created using Swiss-Model and UCSF Chimera from the template structure of HLA-DRB1 * 01: 01 (Protein Data Bank code 3PDO) A heterodimer structure containing HLA-DRB1 * 07: 01 was used. The tertiary structure of the LGI1 fragment could be predicted from the PEPstrMOD server. Hydrogen was added using AutuDock Tools 1.5.6rc3, Gasteiger charge was assigned, and rotatable bonds were assigned to proteins. Using the AutoDock Vina software, the gap and twist number of the total peptide bonds were set to zero, followed by docking LGI1 fragments into the HLA-DRB1 * 07: 01 allele.
<실시예><Example>
1. 자가면역성 뇌염 환자의 HLA genotyping1. HLA genotyping in patients with autoimmune encephalitis
11명의 항-LGI1 뇌염 환자와 17명의 항-NMDAR 뇌염 환자를 대상으로 HLA genotyping을 실시하였다. 환자의 임상적 특징과 HLA 대립유전자의 분포를 하기 표 1, 표 2 및 표 3에 나타내었다.HLA genotyping was performed in 11 anti-LGI1 encephalitis patients and 17 anti-NMDAR encephalitis patients. The clinical characteristics of the patients and the distribution of HLA alleles are shown in Tables 1, 2 and 3 below.
Figure PCTKR2017012614-appb-T000001
Figure PCTKR2017012614-appb-T000001
상기 표 1은 실험에 참여한 항-LGI1 뇌염 환자들 및 항-NMDAR 뇌염 환자들의 연령, 증상, 뇌척수액(CSF, cerebrospinal fluid), 뇌 MRI와 같은 임상적 특징을 환자 수 및 그 비율(%)로 나타낸 것이다. 이 때, CSF* 중 다구증(Pleocytosis)은 백혈구가 5/㎕인 것으로 정의하였고, CSF 단백질 증가는 45㎎/㎗인 것으로 정의하였다.Table 1 shows the clinical characteristics such as age, symptoms, cerebrospinal fluid (CSF, cerebrospinal fluid), and brain MRI in the anti-LGI1 encephalitis patients and anti-NMDAR encephalitis patients participated in the experiment in terms of the number and percentage of patients. will be. At this time, Pleocytosis in CSF * was defined as the leukocytes 5 / μl, CSF protein increase was defined as 45 mg / ㎗.
Figure PCTKR2017012614-appb-T000002
Figure PCTKR2017012614-appb-T000002
Figure PCTKR2017012614-appb-I000001
Figure PCTKR2017012614-appb-I000001
상기 표 2는 실험에 참여한 11명의 항-LGI 뇌염 환자들의 임상 증상 및 17명의 항-NMDAR 뇌염 환자들의 임상 증상을 나타낸 것이다. 이 때, 표 2의 *은 이전의 늑골 골절로 인한 것을 뜻하며, **은 발병 초기부터 병원에 입원하였다는 것을 뜻한다.Table 2 above shows the clinical symptoms of 11 anti-LGI encephalitis patients and the clinical symptoms of 17 anti-NMDAR encephalitis patients. At this time, the * in Table 2 means the previous rib fracture, ** means to be hospitalized from the beginning of the onset.
Figure PCTKR2017012614-appb-T000003
Figure PCTKR2017012614-appb-T000003
상기 표 3은 11명의 항-LGI1 뇌염 환자들과 17명의 항-NMDAR 뇌염 환자들의 HLA genotyping 결과를 나타낸 것이다. 이 때, 밑줄이 그어진 대립유전자의 P 값은 0.05미만인 것을 나타낸다.Table 3 shows the HLA genotyping results of 11 anti-LGI1 encephalitis patients and 17 anti-NMDAR encephalitis patients. At this time, the P value of the underlined allele indicates that it is less than 0.05.
2. 항-LGI1 뇌염 환자에서의 독특한 HLA 대립유전자의 아형2. Subtypes of Unique HLA Alleles in Patients with Anti-LGI1 Encephalitis
하기 표 4 및 표 5로부터 항-LGI1 뇌염이 독특한 HLA 대립유전자의 아형과 관련이 있는 것을 확인할 수 있다.From Tables 4 and 5 below it can be seen that anti-LGI1 encephalitis is associated with a unique HLA allele subtype.
Figure PCTKR2017012614-appb-T000004
Figure PCTKR2017012614-appb-T000004
상기 표 4는 뇌전증 환자 대조군과 정상인 대조군 및 자가면역성 뇌염 환자군에서 선택된 대립유전자의 표현형의 빈도 분포 또는 선택된 일배체형의 보인자 빈도를 나타낸 것이다. 이 때, Haplotype #1*은 HLA-DRB1*07:01-DQB1*02:02를 뜻하며, Haplotype #2*는 HLA-C*07:06-B*44:03을 뜻하고, Haplotype #3*은 HLA-C*07:06-B*44:03*DRB1*07:01-DQB1*02:02를 뜻한다.Table 4 shows the frequency distribution of selected alleles or carrier frequency of selected haplotypes in the epilepsy patient control group, the normal control group and the autoimmune encephalitis patient group. In this case, Haplotype # 1 * means HLA-DRB1 * 07: 01-DQB1 * 02: 02, Haplotype # 2 * means HLA-C * 07: 06-B * 44: 03, and Haplotype # 3 * Means HLA-C * 07: 06-B * 44: 03 * DRB1 * 07: 01-DQB1 * 02: 02.
Figure PCTKR2017012614-appb-T000005
Figure PCTKR2017012614-appb-T000005
상기 표 5는 자가면역성 뇌염 환자 실험군 대비 뇌전증 환자 대조군 및 정상인 대조군에서 선택된 대립형질 또는 일배체형을 통계적으로 분석한 것을 나타낸 것이다. 이 때, Haplotype #1*은 HLA-DRB1*07:01-DQB1*02:02를 뜻하며, Haplotype #2*는 HLA-C*07:06-B*44:03을 뜻하고, Haplotype #3*은 HLA-C*07:06-B*44:03*DRB1*07:01-DQB1*02:02를 뜻한다.Table 5 shows a statistical analysis of alleles or haplotypes selected from the epilepsy patient control group and the normal control group compared to the autoimmune encephalitis patients experimental group. In this case, Haplotype # 1 * means HLA-DRB1 * 07: 01-DQB1 * 02: 02, Haplotype # 2 * means HLA-C * 07: 06-B * 44: 03, and Haplotype # 3 * Means HLA-C * 07: 06-B * 44: 03 * DRB1 * 07: 01-DQB1 * 02: 02.
상기 표 4 및 표 5로부터 얻어진 HLA 대립유전자의 빈도를 도 1에 막대 그래프로 나타내었다.The frequency of the HLA alleles obtained from Tables 4 and 5 is shown as a bar graph in FIG. 1.
도 1의 A는 HLA-DRB1*07:01-DQB1*02:02 일배체형의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다.FIG. 1A shows a bar graph of the frequency of HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotypes. The horizontal axis of the bar graph shows the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group, and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency.
도 1의 A를 참고해보면, 11명의 항-LGI1 뇌염 환자 중 91%인 10명의 항-LGI1 환자들은 HLA-DRB1*07:01 대립유전자와 HLA-DQB1*02:02 대립유전자를 모두 보유하고 있었다. 그러나 HLA-DRB1*07:01-DQB1*02:02의 일배체형(haplotype)을 가진 환자들의 빈도는 뇌전증(Epilepsy) 환자 실험군에서 9%로 나타났고, 정상인 대조군(Healthy)에서 12%로 나타났다. 이로부터 HLA-DRB1*07:01 대립유전자와 HLA-DQB1*02:02 대립유전자의 빈도가 일배체형과 항-LGI1 뇌염간의 연관성에 있어서 중요한 것임을 확인할 수 있다(**p<0.001, OR=106.7 vs 뇌전증 환자 실험군, **p<0.001, OR=73.6 vs 정상인 대조군).Referring to FIG. 1A, 10 anti-LGI1 patients (91% of 11 anti-LGI1 encephalitis patients) had both HLA-DRB1 * 07: 01 allele and HLA-DQB1 * 02: 02 allele . However, the frequency of HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype was 9% in the epilepsy group and 12% in the healthy control group. . This confirms that the frequency of the HLA-DRB1 * 07: 01 allele and HLA-DQB1 * 02: 02 allele is important in the association between haplotype and anti-LGI1 encephalitis (** p <0.001, OR = 106.7). vs epilepsy patients, ** p <0.001, OR = 73.6 vs normal controls).
도 1의 B는 HLA-DRB1*07:01 대립유전자의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다(**p<0.001).1B shows the frequency of the HLA-DRB1 * 07: 01 allele in a bar graph. The horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p <0.001).
도 1의 C는 HLA-DQB1*02:02 대립유전자의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다(**p<0.001).1C shows the frequency of the HLA-DQB1 * 02: 02 allele in a bar graph. The horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p <0.001).
도 1의 B 및 C를 참고하면, 각각의 대립 형질을 개별적으로 분석했을 때, HLA-DRB1*07:01 대립유전자와 HLA-DQB1*02:02 대립유전자는 모두 독립적으로 항-LGI1 뇌염과 관련이 있는 것을 확인할 수 있다.Referring to B and C of FIG. 1, when each allele is analyzed separately, both the HLA-DRB1 * 07: 01 allele and the HLA-DQB1 * 02: 02 allele are independently associated with anti-LGI1 encephalitis You can see this.
도 1의 D는 HLA-B*44:03 대립유전자의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다(**p<0.001).1D shows a bar graph of the frequency of the HLA-B * 44: 03 allele. The horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p <0.001).
도 1의 E는 HLA-C*07:06 대립유전자의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다(**p<0.001).Figure 1 E shows the frequency of the HLA-C * 07: 06 allele in a bar graph. The horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p <0.001).
도 1의 D 및 E를 참고하여, HLA class I의 아형 중 HLA-B*44:03 및 HLA-C*07:06 대립유전자의 빈도는 모두 항-LGI1 뇌염 환자 실험군에서의 빈도가 뇌전증 실험군 및 정상인 대조군에서의 빈도보다 더 높은 것을 확인할 수 있었다(모두 p<0.001). HLA-B*44:03 대립유전자는 11명의 항-LGI1 뇌염 환자들 중 73%인 8명의 항-LGI1 뇌염 환자에게서 발견되었으며, HLA-C*07:06 대립유전자는 11명의 항-LGI1 뇌염 환자들 중 7명의 항-뇌염 환자들에게서 발견되었다.Referring to D and E of FIG. 1, the frequency of the HLA-B * 44: 03 and HLA-C * 07: 06 alleles among the subtypes of HLA class I were all high in the experimental group of patients with anti-LGI1 encephalitis. And it was confirmed that the frequency higher than that in the normal control group (both p <0.001). The HLA-B * 44: 03 allele was found in 8 anti-LGI1 encephalitis patients, 73% of 11 anti-LGI1 encephalitis patients, and the HLA-C * 07: 06 allele was found in 11 anti-LGI1 encephalitis patients Seven of these patients were found in anti-encephalitis patients.
도 1의 F는 HLA-C*07:06-B*44:03-DRB1*07:01-DQB1*02:02 일배체형(haplotype)의 빈도를 막대 그래프로 나타낸 것이다. 막대 그래프의 가로축은 차례대로 LGI1 환자 실험군, 뇌전증 환자 실험군, 정상인 대조군 및 NMDAR 환자 실험군을 나타내며, 막대 그래프의 세로축은 보인자 빈도(Carrier frequency)를 나타낸다(**p<0.001).FIG. 1F shows a bar graph of the frequency of HLA-C * 07: 06-B * 44: 03-DRB1 * 07: 01-DQB1 * 02: 02 haplotype. The horizontal axis of the bar graph represents the LGI1 patient experimental group, the epilepsy patient experimental group, the normal control group and the NMDAR patient experimental group, and the vertical axis of the bar graph represents the carrier frequency (** p <0.001).
또한, 특정한 HLA 유형과 항-LGI1 뇌염간의 관계는 도 2를 통해 확인할 수 있다.In addition, the relationship between the specific HLA type and anti-LGI1 encephalitis can be confirmed through FIG.
도 2는 특정한 항-LGI1 뇌염 환자 실험군에서의 HLA 대립유전자를 시각화 한 것이다. HLA-DQB1 대립유전자와 HLA-DRB1 대립유전자 사이에서 굵게 표현된 실선은 절대 연관 뷸균형(absolute linkage disequilibrium, 상대적 연관 불균형 계수=1)을 나타내며, HLA-B 대립유전자와 HLA-C 대립유전자 사이의 점선은 중간 정도의 연관 불균형(moderate linkage disequilibrium, 상대적 연관 불균형 계수=0.75)을 나타낸다.2 is a visualization of HLA alleles in a specific experimental group of patients with anti-LGI1 encephalitis. The solid line in bold between the HLA-DQB1 allele and the HLA-DRB1 allele indicates an absolute linkage disequilibrium (relative relative disequilibrium factor = 1) and is defined between the HLA-B allele and the HLA-C allele. The dashed line represents moderate linkage disequilibrium (relative linkage disequilibrium coefficient = 0.75).
이러한 결과로부터 HLA class II의 HLA-DRB1*07:01-DQB1*02:02 일배체형은 항-LGI1 뇌염에 대한 가장 강한 감수성을 나타내며, HLA class I의 HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 또한 항-LGI1 뇌염과 유의한 연관성을 보이는 것을 확인할 수 있었다.From these results, the HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype of HLA class II shows the strongest susceptibility to anti-LGI1 encephalitis, the HLA-B * 44: 03 allele and HLA of HLA class I -C * 07: 06 allele also showed significant association with anti-LGI1 encephalitis.
3. 항-NMDAR 뇌염에 대한 HLA 감수성 유전자좌 부족3. Lack of HLA Susceptibility Locus for Anti-NMDAR Encephalitis
항-NMDAR 뇌염 실험군은 임의의 HLA 대립 유전자와 특별한 연관성을 나타내지 않았다. 상기 표 4 및 표 5로부터 HLA-A*02:06과 HLA-B*40:06 대립유전자가 항-NMDAR 뇌염 환자에게서 높은 빈도를 보이는 것을 확인할 수 있으나, 그 차이가 통계적으로 유의하지 않은 것을 확인할 수 있다.The anti-NMDAR encephalitis experimental group showed no special association with any HLA allele. It can be seen from Table 4 and Table 5 that the HLA-A * 02: 06 and HLA-B * 40: 06 alleles show a high frequency in patients with anti-NMDAR encephalitis, but the difference is not statistically significant. Can be.
또한, 항-LGI1 뇌염 환자에게서 높은 빈도를 보였던 HLA-DRB1*07:01-DQB1*02:02 일배체형은 17명의 항-NMDAR 뇌염 환자 중 1명의 항-NMDAR 뇌염 환자에게서만 관찰되었다. HLA-B*44:03 대립유전자는 2명의 항-NMDAR 뇌염 환자에게서 관찰되었고, HLA-C*07:06 대립유전자는 1명의 항-NMDAR 뇌염 환자에게서 관찰되었다.In addition, the HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype, which was frequently seen in patients with anti-LGI1 encephalitis, was observed only in one of 17 anti-NMDAR encephalitis patients. The HLA-B * 44: 03 allele was observed in two anti-NMDAR encephalitis patients, and the HLA-C * 07: 06 allele was observed in one anti-NMDAR encephalitis patient.
4. HLA-DRB1*07:01대립유전자와 LGI1의 결합 예측 및 컴퓨터를 이용한 도킹4. HLA-DRB1 * 07: 01 Predicting Binding of Allele and LGI1 and Using Computerized Docking
HLA 대립유전자의 아형과 항-LGI1 뇌염간의 연관성을 확립되어 있는 HLA 펩티드 결합 예측 알고리즘을 통해 확인할 수 있었다. 양적 행렬 및 인공 신경망을 사용하는 알고리즘을 이용한 결과, 모든 이용 가능한 HLA class Ⅱ 대립유전자 중 HLA-DRB1*07:01 대립유전자가 LGI1 서열에 가장 높은 친화성을 가질 것으로 예상되었다. 양적 행렬(ProPred)을 이용하는 알고리즘으로 예측해보면, 14개의 HLA-DR 대립유전자들 중 HLA-DRB1*07:01 대립유전자가 가장 높은 점수인 9.4점으로 예측되었으며, 표적 서열은 'FLFTPSLQL' 이었고, LGI1 단백질의 N-말단으로부터 87번째 아미노산 위치였다. 인공 신경망(NetMHCⅡ)을 이용하는 알고리즘으로 예측해보면, 이용가능한 HLA-DR 대립유전자 및 HLA-DQ 대립유전자들 중 HLA-DRB1*07:01 대립유전자가 동일한 핵심 서열인 'FLFTPSLQL' 과 3.7nM으로 가장 높은 친화성을 가지는 것을 예측할 수 있었다.The HLA peptide binding prediction algorithm established the association between HLA allele subtypes and anti-LGI1 encephalitis. Using algorithms using quantitative matrices and artificial neural networks, it was expected that of all available HLA class II alleles, the HLA-DRB1 * 07: 01 allele had the highest affinity for the LGI1 sequence. Predicted by an algorithm using quantitative matrix (ProPred), the HLA-DRB1 * 07: 01 allele predicted the highest score of 9.4, out of 14 HLA-DR alleles, and the target sequence was 'FLFTPSLQL' and LGI1. The 87th amino acid position from the N-terminus of the protein. Predicted by an algorithm using an artificial neural network (NetMHCII), among the available HLA-DR alleles and HLA-DQ alleles, the HLA-DRB1 * 07: 01 allele is the highest with the same key sequences 'FLFTPSLQL' and 3.7 nM It was predictable to have affinity.
따라서, LGI1 단백질의 고류신반복(Leucine-rich repeat) 도메인의 일부분인 'FLFTPSLQL' 서열은 HLA-DRB1*07:01 대립유전자의 리간드일 가능성이 높은 것을 알 수 있다. HLA class Ⅰ 펩티드 결합 예측에서는 HLA-A*31:01 대립유전자가 2.4nM으로 가장 높은 친화력을 가질 것으로 예측되었다. 이 때, 친화력은 결합 예측에서 낮은 값을 가질수록 높은 친화력을 가지게 된다. 비록 HLA class Ⅰ 및 Ⅱ 대립유전자 간의 결합 친화력을 직접적으로 비교하는 것은 논리에 맞지 않지만, HLA-A*31:01 대립유전자를 제외한 13개의 HLA-A 대립유전자, 18개의 HLA-B 대립유전자 및 10개의 HLA-C 대립유전자들 중에서는 HLA-DRB1*07:01 대립유전자보다 높은 친화력을 가질 것으로 예측되는 대립유전자는 없었다. HLA-B*44:03 대립유전자와 LGI1 단백질의 친화도는 145.32nM으로 예측되었으나, HLA-C*07:06 대립유전자는 예측할 수 없었다.Therefore, it can be seen that the 'FLFTPSLQL' sequence, which is part of the Leucine-rich repeat domain of the LGI1 protein, is likely to be a ligand of the HLA-DRB1 * 07: 01 allele. In predicting HLA class I peptide binding, the HLA-A * 31: 01 allele was predicted to have the highest affinity of 2.4 nM. In this case, the lower the affinity in binding prediction, the higher the affinity. Although it is not logical to directly compare the binding affinity between HLA class I and II alleles, there are 13 HLA-A alleles, 18 HLA-B alleles and 10 except for the HLA-A * 31: 01 allele. None of the HLA-C alleles predicted to have higher affinity than the HLA-DRB1 * 07: 01 allele. The affinity between the HLA-B * 44: 03 allele and the LGI1 protein was predicted to be 145.32 nM, but the HLA-C * 07: 06 allele was unpredictable.
이를 통해, HLA-DRB1*07:01 대립유전자의 리간드와 컴퓨터를 이용한 도킹을 수행하였다. 컴퓨터를 이용하는 도킹 프로그램은 -12.9kcal/mol 도킹 스코어(ΔG)로 'FLFTPSLQL' 서열과 HLA-DRB1*07:01 대립유전자와 HLA-DRA1*01:01 대립유전자로 이루어지는 일배체형(heterodimer)이 결합될 수 있다고 예측했다.Through this, docking using a ligand and a computer of the HLA-DRB1 * 07: 01 allele was performed. A computer-aided docking program combines a heterodimer consisting of the 'FLFTPSLQL' sequence, the HLA-DRB1 * 07: 01 allele and the HLA-DRA1 * 01: 01 allele with a -12.9 kcal / mol docking score (ΔG). Predicted to be.
도 3은 HLA-DRB1*07:01 대립유전자와 HLA-DRA1*01:01 대립유전자의 헤테로다이머(heterodimer)와 LGI1 조각인 'FLFTPSLQL' 서열이 결합되는 것을 나타낸 것이다.Figure 3 shows that the HLA-DRB1 * 07: 01 allele, the heterodimer of the HLA-DRA1 * 01: 01 allele and the 'FLFTPSLQL' sequence of the LGI1 fragment are bound.
11명의 환자 중 10명의 환자에게서 발견되는 HLA-DRB1*07:01-DQB1*02:02 일배체형(haplotype) 및 7명의 환자에게서 발견되는 HLA-C*07:06-B*44:03-DRB1*07:01-DQB1*02:02 일배체형(haplotype)을 통해 특징되는 항-LGI1 뇌염에서의 HLA 대립유전자의 분포는 대체로 균일한 것을 확인할 수 있다.HLA-DRB1 * 07: 01-DQB1 * 02: 02 haplotype found in 10 of 11 patients and HLA-C * 07: 06-B * 44: 03-DRB1 found in 7 patients * 07: 01-DQB1 * 02: 02 The distribution of HLA alleles in anti-LGI1 encephalitis characterized by haplotype can be found to be generally uniform.
이와 같이, 상술한 본 발명의 기술적 구성은 본 발명이 속하는 기술분야의 당업자가 본 발명의 그 기술적 사상이나 필수적 특징을 변경하지 않고서 다른 구체적인 형태로 실시될 수 있다는 것을 이해할 수 있을 것이다.As such, the technical configuration of the present invention described above can be understood by those skilled in the art that the present invention can be implemented in other specific forms without changing the technical spirit or essential features of the present invention.
그러므로 이상에서 기술한 실시예들은 모든 면에서 예시적인 것이며 한정적인 것이 아닌 것으로서 이해되어야 하고, 본 발명의 범위는 전술한 상세한 설명보다는 후술하는 청구범위에 의하여 나타내어지며, 청구범위의 의미 및 범위 그리고 그 등가개념으로부터 도출되는 모든 변경 또는 변형된 형태가 본 발명의 범위에 포함되는 것으로 해석되어야 한다.Therefore, the exemplary embodiments described above are to be understood as illustrative and not restrictive in all aspects, and the scope of the present invention is indicated by the following claims rather than the foregoing detailed description, and the meaning and scope of the claims and their All changes or modifications derived from equivalent concepts should be construed as being included in the scope of the present invention.

Claims (9)

  1. 검체로부터 분리된 생물학적 시료를 획득하는 단계;Obtaining a biological sample isolated from the sample;
    상기 생물학적 시료로부터 HLA 유전형을 확인하는 단계; 및Identifying HLA genotypes from the biological sample; And
    상기 HLA 유전형에 따른 자가면역성 뇌염 질환 정보를 제공하는 단계;를 포함하는Providing autoimmune encephalitis disease information according to the HLA genotype;
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  2. 제1항에 있어서,The method of claim 1,
    상기 정보를 제공하는 단계는,Providing the information,
    상기 확인된 HLA 유전형과 기준 대립유전자의 유전형과의 비교에 따라, 특정자가면역성 뇌염 질환의 발생 가능성 정보를 제공하는 단계를 포함하는Providing information on the likelihood of occurrence of a specific autoimmune encephalitis disease in accordance with the comparison of the identified HLA genotype with the genotype of the reference allele.
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  3. 제2항에 있어서,The method of claim 2,
    상기 기준 대립유전자는 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지인 것을 특징으로 하는The reference allele is any one of the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele Characterized
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  4. 제3항에 있어서,The method of claim 3,
    상기 특정 자가면역성 뇌염 질환은 항-LGI1 뇌염 질환 또는 항-NMDAR 뇌염 질환 중 적어도 하나를 포함하는The specific autoimmune encephalitis disease comprises at least one of an anti-LGI1 encephalitis disease or an anti-NMDAR encephalitis disease
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  5. 제4항에 있어서,The method of claim 4, wherein
    상기 자가면역성 뇌염 질환의 발생 가능성은The possibility of developing the autoimmune encephalitis disease
    상기 HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 적어도 하나의 대립유전자가 상기 생물학적 시료 내에 존재하는 경우,At least one allele of the HLA-DRB1 * 07: 01 allele, the HLA-DQB1 * 02: 02 allele, the HLA-B * 44: 03 allele and the HLA-C * 07: 06 allele may be used in the biological sample. If present in
    자가면역성 뇌염 질환의 발생 가능성이 정상인 경우보다 더 높은 것을 특징으로 하는Characterized by a higher probability of developing autoimmune encephalitis disease than normal
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  6. 제1항에 있어서,The method of claim 1,
    상기 생물학적 시료는 활액, 혈액, 림프, 뇨, 누액, 타액 또는 분변으로부터The biological sample is derived from synovial fluid, blood, lymph, urine, tear fluid, saliva, or feces.
    선택된 어느 하나인,Whichever one is chosen,
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  7. 제1항에 있어서,The method of claim 1,
    상기 생물학적 시료의 존재 여부 확인은 HLA-genotyping, serotyping 검정법 또는 HLA 미량림프구 세포장애(HLA microcytotoxicity) 검정법으로부터 선택되는 어느 하나의 방법에 의한 것인,The presence of the biological sample is by any one method selected from HLA-genotyping, serotyping assay, or HLA microcytotoxicity assay,
    자가면역성 뇌염 질환에 관한 정보 제공 방법.How to provide information about autoimmune encephalitis disease.
  8. HLA-DRB1*07:01 대립유전자, HLA-DQB1*02:02 대립유전자, HLA-B*44:03 대립유전자 및 HLA-C*07:06 대립유전자 중 어느 한 가지 대립유전자를 탐지하기 위한 수단을 포함하는Means for detecting alleles of any of the HLA-DRB1 * 07: 01 alleles, the HLA-DQB1 * 02: 02 alleles, the HLA-B * 44: 03 alleles and the HLA-C * 07: 06 alleles Containing
    자가면역성 뇌염 질환 예측용 키트.Predictive kit for autoimmune encephalitis disease.
  9. 제8항에 있어서,The method of claim 8,
    상기 자가 면역 뇌염 질환은 항-LGI1 뇌염 질환 및 항-NMDAR 뇌염 질환 중 적어도 하나를 포함하는The autoimmune encephalitis disease comprises at least one of an anti-LGI1 encephalitis disease and an anti-NMDAR encephalitis disease
    자가면역성 뇌염 질환 예측용 키트.Predictive kit for autoimmune encephalitis disease.
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