WO2018077716A1 - Foxp3-binding peptides and uses thereof - Google Patents
Foxp3-binding peptides and uses thereof Download PDFInfo
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- WO2018077716A1 WO2018077716A1 PCT/EP2017/076690 EP2017076690W WO2018077716A1 WO 2018077716 A1 WO2018077716 A1 WO 2018077716A1 EP 2017076690 W EP2017076690 W EP 2017076690W WO 2018077716 A1 WO2018077716 A1 WO 2018077716A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/08—Linear peptides containing only normal peptide links having 12 to 20 amino acids
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
- A61K38/04—Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
- A61K38/12—Cyclic peptides, e.g. bacitracins; Polymyxins; Gramicidins S, C; Tyrocidins A, B or C
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
- A61P35/02—Antineoplastic agents specific for leukemia
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
- C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
- C07K14/4702—Regulators; Modulating activity
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
- C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
- C07K14/4713—Autoimmune diseases, e.g. Insulin-dependent diabetes mellitus, multiple sclerosis, rheumathoid arthritis, systemic lupus erythematosus; Autoantigens
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/50—Cyclic peptides containing at least one abnormal peptide link
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/64—Cyclic peptides containing only normal peptide links
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
- C07K2319/10—Fusion polypeptide containing a localisation/targetting motif containing a tag for extracellular membrane crossing, e.g. TAT or VP22
Definitions
- the present invention refers to peptides capable of binding FoxP3 and to pharmaceutical salts thereof. These peptides are able to regulate/block Treg cells, which find application in the treatment of diseases wherein a regulation of Treg cell activity is needed, such as infectious or neoplastic diseases.
- Immunotherapy is very promising for the treatment of patients with cancer.
- the numerous clinical protocols carried out which have used therapies based on cytokines, infusions of effector T cells or vaccination protocols have demonstrated that cancer immunotherapy is generally safe.
- the induction of immune response after the treatment has been observed in these clinical protocols, most of the patients are incapable of developing an effective antitumor response.
- the demonstration of the presence of Treg lymphocytes in the tumor tissue or the lymph nodes of patients with melanoma , lung cancer, ovarian cancer , pancreatic cancer and breast cancer as well as in hepatocarcinomas Nehikawa H. et al., "Regulatory T cells in tumor immunity", Int. J. Cancer, 2010, vol.
- Treg cells The regulatory T cells (Treg cells or Tregs), formerly known as suppressor T cells, are a subpopulation of T cells which modulate the immune system, maintain tolerance to self- antigens, and prevent autoimmune disease. Treg cells are immunosuppressive and generally suppress or downregulate induction and proliferation of effector T cells. Treg cells express the biomarkers CD4, FOXP3, and CD25 and are thought to be derived from the same lineage as na ' ive CD4 cells.
- Treg lymphocytes in infectious diseases, the control exerted by Treg lymphocytes can limit the magnitude of the effector T responses and cause the failure in the control of the infection. It has thus been described that some viruses such as hepatitis B virus, hepatitis C virus and HIV (Joosten S. A. et ai, "Human CD4 and CD8 regulatory T cells in infectious diseases and vaccination", Hum. Immunol., 2008, vol. 69(11), pages 760-70) can use Treg lymphocytes to block the antiviral immune response and thus allow the establishment of the persistent chronic infection. Due to all this, it is believed that the modulation of the action of Treg lymphocytes can be essential in the development of immunotherapies against cancer or against infectious diseases.
- viruses such as hepatitis B virus, hepatitis C virus and HIV (Joosten S. A. et ai, "Human CD4 and CD8 regulatory T cells in infectious diseases and vaccination", Hum. Immunol., 2008, vol.
- Treg lymphocytes have been disclosed in the prior art, in an attempt to regulate their negative effect on the immune system.
- Some of these methods involve the elimination of Treg cells, by means of using depleting antibodies or by means of blocking the cytokines that they produce and which may be responsible for their activities (TGF- ⁇ , IL-10).
- TGF- ⁇ , IL-10 cytokines that they produce and which may be responsible for their activities.
- the methods which are based on the depletion of the regulatory T cells have the drawback that they eliminate the cells and involve risks of causing autoimmune diseases.
- FOXP3 forkhead box P3
- This protein is member of the FOX protein family, and appears to function as a master regulator of the regulatory pathway in the development and function of regulatory T cells.
- Treg which are generated in the thymus
- FoxP3 expression can be induced in the periphery in CD4+ CD25- T cells through TCR crosslinking, leading to attenuation of effector functions in the stimulated cells (proliferation and cytokine production) (Reviewed in Lozano T. et al., "Searching for the Achilles Heel of FOXP3", Front. Oncol., 2013, vol.
- the immune-suppressive tumour microenvironment affects antigen presentation to tumor-specific T cells and may result in suboptimal T-cell activation and T-cell tolerance.
- expression of FoxP3 after suboptimal TCR stimulation of CD4+ in the presence of immunosuppressive cytokines TGF- ⁇ , IL-6 or IL-10 and other metabolites may have an important role governing the functionality of transferred lymphocytes favouring T-cell-tolerization. It has become evident that Foxp3 can be transiently expressed in activated human or murine CD4+ T cells acquiring some features of Treg cells (Reviewed in Lozano T. et al., 2013, supra). But, such induced FoxP3 expression may not be restricted to CD4 T cells. Indeed there are increasing reports on the
- FOXP3 capacity to bind DNA is critical for its functionality and it is known that FOXP3-DNA interactions are assisted by other cofactors and by multimerization. Growing numbers of transcription factors that interact with FOXP3 are being identified and some have been implicated in the Treg cell-specific gene expression program (Reviewed in Lozano T. et ai., 2013, supra).
- FOXP3 has various distinguishable functional domains: (i) a N-terminal domain (from aa 1 to 193, with two proline-rich regions), (ii) a zinc finger (aa 200-223) and a leucine zipper-like motif (aa 240-261) (ZL domain) located in the centre of the protein and (iii) the highly conserved carboxy terminal forkhead domain (FKH; from aa 338 to 421) responsible for binding to DNA. It has been described that the intermediate region is implicated in FOXP3 dimerization, which is required for its function as a transcriptional regulator (Reviewed in Lozano T. et ai, 2013, supra).
- ArgAspPheGlnSerPheArgLysMetTrpProPhePheAlaMet (SEQ ID NO: 1) which entered the cells, bound to FOXP3 and inhibited murine and human-derived Treg, improving effector T-cell stimulation in vitro and in vivo (Casares N. et al., "A peptide inhibitor of F0XP3 impairs regulatory T cell activity and improves vaccine efficacy in mice", J. Immunol., 2010 , vol. 185(9), pages 5150-5159).
- the present inventors have also identified amino acid positions in p60 peptide sequence that are critical for regulating and substantially improving both the binding to FoxP3 and the regulation/blocking of the immunosuppressive activity of Treg lymphocytes.
- the present inventors have also found that the peptides of the invention provide an increase in FoxP3 inhibition of up to about a 50%, when compared to p60.
- the peptides reported by the present inventors mean a great advance in the field of immunotherapy in general, and of cancer or infectious diseases therapies, in particular.
- the present invention provides a peptide, capable of binding FoxP3 and of inhibiting FoxP3, or a pharmaceutically salt thereof, the peptide being selected from the group consisting of: a peptide of formula (I):
- R2' is hydrogen
- R3 and R 4 are monoradicals the same or different and are selected from the group consisting of: hydrogen and (Ci-Cio)alkyl; and
- Rs to R22 are monoradicals selected from the group consisting of: hydrogen, (Ci-Cio)alkyl, (C2- Cio)alkenyl, and (C2-Cio)alkynyl; the (Ci-Cio)alkyl, (C2-Ci 0 )alkenyl, and (C2-Cio)alkynyl being non-substituted or substituted, wherein
- substituted (Ci-Cio)alkyl means that the (Ci-Cio)alkyl is substituted by one or more radicals selected from the group consisting of: halogen, -OR23, -NO2, -NR2 4 R25, -SR26, - SO2R27, -CO2R28, (Ci-Cio)alkyl ,(Ci-Cio)alkyl-0-, and a (C 3 -C 6 )cycloakyl, being R 23 to R 28 monoradicals, the same or different, and selected from the group consisting of: -H, (Ci-Cio)alkyl, (C2-Cio)alkenyl, and (C2-Ci 0 )alkynyl;
- substituted (C2-Cio)alkenyl means that the (C2-Cio)alkenyl is substituted by one or more radicals selected from the group consisting of: halogen, -OR29, -NO2, -NR30R31 , -SR32, - SO2R33, -CO2R34, (Ci-Cio)alkyl, (Ci-Cio)alkyl-O-, and a (C 3 -C 6 )cycloakyl, being R 29 to R34 monoradicals, the same or different, and selected from the group consisting of: -H, (Ci-Cio)alkyl, (C 2 -Cio)alkenyl, and (C 2 -Cio)alkynyl;
- substituted (C2-Cio)alkynyl means that the (C2-Cio)alkynyl is substituted by one or more radicals selected from the group consisting of: halogen, -OR35, -NO2, -NR36R37, -SR38, - SO2R39, -CO2R40, (Ci-Cio)alkyl, (Ci-Cio)alkyl-O-, and a (C 3 -C 6 )cycloakyl, being R 35 to R 4 o monoradicals, the same or different, and selected from the group consisting of: -H, (Ci-Cio)alkyl, (C 2 -Cio)alkenyl, and (C 2 -Cio)alkynyl; provided that:
- Xi is an amino acid other than L-Asp
- X 2 is an amino acid other than L-Phe
- X3 is an amino acid other than L-Ser
- X 4 is an amino acid other than L-Lys
- X5 is an amino acid other than L-Pro
- the present invention provides a construct comprising: (i) a peptide as defined in the first aspect of the invention; and (ii) a cell-penetrating agent with capacity to internalize a peptide in a cell
- the present invention provides a combination comprising: (a) a peptide as defined in the first aspect of the invention, or alternatively, a construct as defined in the second aspect of the invention, or alternatively both the peptide as defined in the first aspect of the invention and a construct as defined in the second aspect of the invention; and (b) one or more immunomodulatory compounds.
- the present invention provides a veterinary or pharmaceutical composition
- a veterinary or pharmaceutical composition comprising a therapeutically effective amount of a peptide as defined in the first aspect of the invention, or of a construct as defined in the second aspect of the invention, or of a combination as defined in the third aspect of the invention, together with at least one veterinary or pharmaceutically acceptable excipient.
- the present inventors provide data supporting the inhibitory effect of the peptides of the invention on Treg cells. Due to the role of Treg lymphocytes in a number of biological processes and to the fact that FoxP3 is essential for their immunosuppressive activity, the use of the peptides of the invention opens up a window for a potential development of a new family of drugs that are potentially useful in the treatment of neoplastic diseases and of infectious diseases. As mentioned above, the inhibition of the biological activity of FoxP3 allows the peptides of the invention to transiently or temporarily regulate or block the immunosuppressive activity of Treg lymphocytes. Therefore therapies can be developed for the treatment of neoplastic diseases or of infectious diseases in which the action of said Treg lymphocytes is furthermore selectively and transiently controlled such that the risk of induction of autoimmunity as a result of their elimination is reduced.
- the peptides of the invention can be used in the treatment of a pathology in which it is suitable or necessary to transiently or temporarily regulate or block the immunosuppressive activity of Treg lymphocytes, as occurs in the case of neoplastic diseases or of infectious diseases in which the Treg lymphocytes can have an immunosuppressive role, preventing the correct activation of an effective immune response.
- the present invention provides the peptide as defined in the first aspect of the invention, or the construct as defined in the second aspect of the invention, or the combination as defined in the third aspect of the invention, or the veterinary or pharmaceutical composition as defined in the fourth aspect of the invention for use as a medicament.
- the peptides of the invention efficiently prevent the growth of tumor cells (see FIG.s 1 to 3).
- the present invention provides a peptide as defined in the first aspect of the invention, or alternatively a construct as defined in the second aspect of the invention, or alternatively a combination as defined in the third aspect of the invention, or alternatively a pharmaceutical or veterinary composition as defined in the fourth aspect of the invention, for use in the treatment or prevention of a neoplastic disease.
- this aspect can be also formulated as the use of a peptide as defined in the first aspect of the invention, or alternatively of a construct as defined in the second aspect of the invention, or alternatively of a combination as defined in the third aspect of the invention, or alternatively of a pharmaceutical or veterinary composition as defined in the fourth aspect of the invention for the manufacture of a medicament for the treatment or prevention of a neoplastic disease.
- the sixth aspect of the invention can also be formulated as a method for the treatment or prevention of a neoplastic disease, the method comprising the step of
- the present invention provides a peptide as defined in the first aspect of the invention or a construct as defined in the second aspect of the invention for use in the treatment or prevention of cancer, wherein the treatment or prevention further comprises the
- the present invention provides a nucleic acid encoding a peptide as defined in the first aspect of the invention or a construct as defined in the second aspect of the invention when the cell-penetrating agent is a cell-penetrating peptide; in an ninth aspect the present invention provides a vector comprising the nucleic acid of the eighth aspect of the invention; in a tenth aspect the present invention provides an in vitro process for producing a peptide as defined in the first aspect of the invention or a construct as defined in the second aspect of the invention when the cell-penetrating agent is a cell-penetrating peptide, comprising growing a host cell comprising a nucleic acid as defined in the eighth aspect of the invention under conditions allowing the production of the peptide or construct and, if desired, recovering said peptide or said construct; and, in an eleventh aspect, the present invention provides the use of a nucleic acid of the eighth aspect of the invention in the in vitro preparation of vectors and cells for the treatment of
- a peptide of formula (I) as defined in the first aspect of the invention wherein Xi represents a D-amino acid or, alternatively, Xi is a non- conservative amino acid with respect to L-Asp, the non-conservative amino acid being selected from non-polar, neutral polar and basic polar amino acid residues.
- a peptide of formula (I) as defined in the first aspect of the invention wherein X2 represents a D-amino acid or, alternatively, X2 represents a non-conservative amino acid with respect to L-Phe, the non-conservative amino acid being selected from a neutral polar amino acid, an acidic polar amino acid and a basic polar amino acid.
- a peptide of formula (I) as defined in the first aspect of the invention wherein X3 represents a D-amino acid or, alternatively, X3 represents a non-conservative amino acid with respect to L-Ser, the non-conservative amino acid being selected from non-polar, acidic polar and basic polar amino acid residues.
- X4 represents a D-amino acid or, alternatively, A represents a L-basic polar amino acid.
- a peptide of formula (I) as defined in the first aspect of the invention wherein X 5 represents a D-amino acid or, alternatively, X5 represents a non-conservative amino acid with respect to L-Pro, the non-conservative amino acid being selected from a neutral polar amino acid and a basic polar amino acid.
- a peptide of formula (I) as defined in the first aspect of the invention wherein Xi and X3 are the same or different and represent a D- or L-non-polar amino acid.
- a peptide of formula (I) as defined in the first aspect of the invention wherein Xi represents a non-conservative amino acid with respect to L-Asp and X5 represents a non-polar amino acid residue.
- a peptide of formula (I) as defined in the first aspect of the invention wherein two or more of ⁇ , X3, and X5 are non-conservative amino acids with respect to L-Asp, L-Ser, and L-Pro, respectively.
- a peptide of formula (I) as defined in the first aspect of the invention wherein Xi, and X3 represent non-conservative amino acids with respect to L-Asp, and L-Ser respectively, and X5 represents a non-polar amino acid residue.
- aspects related to the peptides defined in the above aspects twelve to twenty, are also part of the invention: (a) constructs comprising a peptide as defined in any one of the aspects twelve to twenty and a cell penetrating peptide; (b) combinations comprising any one of the peptides as defined in any one of the aspects twelve to twenty, or alternatively a construct as defined in (a), and one or more immunomodulatory compounds; (c)
- compositions comprising any one of the peptides as defined in any one of the aspects twelve to twenty, any one of the constructs as defined in (a) or a combination as defined in (b), together with at least one veterinary or pharmaceutically acceptable excipient; (d) the therapeutic use, either as a medicament or in the treatment or prevention of a neoplastic disease of any one of the peptides as defined in any one of the aspects twelve to twenty, any one of the constructs as defined in (a), any combination as defined in (b), or any pharmaceutical or veterinary composition as defined in (c); (e) a peptide as defined in any one of the aspects twelve to twenty or a construct as defined in (a), for use in the treatment or prevention of cancer, wherein the treatment or prevention further comprises the administration of one or more immunomodulatory compounds; (f) a nucleic acid encoding any one of the peptides as defined in any one of the aspects twelve to twenty or a construct as defined in (a), wherein the cell-penetrating agent
- FIG. 1 each curve represents tumor mean diameter for an individual mouse injected with Hepa 129 cells, when receiving antibodies anti-PD1 , antibodies anti-PD1 +the peptide of sequence SEQ ID NO: 50 or nothing.
- FIG. 2 Kaplan-Meier plots of liver cancer mouse survival. The group of mice treated with anti— PD+ SEQ ID NO: 50 was compared with the rest of the groups with the log-rank test. *, P ⁇ 0.05.
- FIG. 3 represents the mean tumor volume for a group of mice treated with AH1 peptide emulsified in IFA and treated with saline, or with p60 (SEQ ID NO: 1) or with the peptide SEQ ID NO: 51 during 10 days, 10 days before the challenge to colon cancer cells.
- the present invention provides, in a first aspect, a peptide of formula (I) or a pharmaceutically or veterinary salt thereof.
- amino acid refers to a molecule containing both an amino group and a carboxyl group.
- Amino acids can be classified by the side chain group. There are basically four different classes of amino acids determined by different side chains: (1) non- polar, (2) polar and neutral, (3) acidic and polar, (4) basic and polar.
- Non-polar amino acids have side chains which are hydrocarbon alkyl groups (alkane branches) or aromatic (benzene rings) or heteroaromatic (e.g. indole ring).
- Illustrative non-limitative examples of common non-polar amino acids are Ala, Val, Leu, He, Pro, Trp, Gly, Phe, and Met.
- Polar-neutral amino acids have polar but not charged groups at neutral pH in the side chain (such as hydroxyl, amide or thiol groups).
- Illustrative non-limitative examples of polar neutral amino acids are Ser, Thr, Cys, Tyr, Asn, and Gin.
- Acid amino acids have acidic side chains at neutral pH. These are aspartic acid or aspartate (Asp) and glutamic acid or glutamate (Glu), among others. Their side chains have carboxylic acid groups whose pKa's are low enough to lose protons, becoming negatively charged in the process.
- Basic amino acids (hereinafter also referred as “basic and polar amino acid”) have side chains containing nitrogen and resemble ammonia which is a base (such as amines, guanidines, or imidazole). Their pKa's are high enough that they tend to bind protons, gaining a positive charge in the process.
- Illustrative non-limitative examples of basic amino acids are Lys, Arg, and His.
- the present invention refers to "a polar amino acid" in general, without specifying the charge (i.e., without specifying neutral, acid or basic polar amino acid).
- the expression "a polar amino acid” encompasses any amino acid falling in the categories of polar-neutral, acid and basic amino acids.
- Suitable amino acids include, without limitation, alpha amino acids, such as the L-isomers of alpha-amino acids of the 20 common naturally occurring alpha-amino acids: alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine; natural beta-amino acids (e.g., beta-alanine); and unnatural amino acids.
- alpha amino acids such as the L-isomers of alpha-amino acids of the 20 common naturally occurring alpha-amino acids: alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lys
- unnatural amino acid comprises D-isomers of the 20 common naturally occurring alpha-amino acids or amino acids of formula (A)
- Each one of the amino acids forming the peptide of the invention can have, independently from the others, L- or D-configuration.
- the amino acid residue at the amine-terminal end N(t) and/or the amino acid residue at the carboxyl-terminal end C(t) has D-configuration.
- Amino acids used in the preparation of the peptides of the present invention may be prepared by organic synthesis, or obtained by other routes, such as, for example, degradation of or isolation from a natural source.
- Xi is an amino acid other than L-Asp
- X2 is an amino acid other than L-Phe
- X3 is an amino acid other than L-Ser
- X 4 is an amino acid other than L-Lys
- Xs is an amino acid other than L- Pro
- an amino acid other than refers either to the corresponding D-amino acid or to a different amino acid, of the same or different polarity nature.
- the amino acid can be D-Asp or an amino acid falling in the same or different category of polarity.
- non-conservative amino acid changes are: (a) a polar amino acid (either neutral or charged polar amino acid) by a nonpolar amino acid (such as Ala, Val, Leu, He, and Pro); (b) a charged polar amino acid (either basic 0 acid) by a nonpolar or polar-neutral amino acid; (c) an acid polar amino acid by a nonpolar, polar-neutral, or basic charged amino acids; and (d) a basic polar amino acid by a nonpolar, polar-neutral, or acidic charged amino acids, among others.
- a polar amino acid either neutral or charged polar amino acid
- a nonpolar amino acid such as Ala, Val, Leu, He, and Pro
- a charged polar amino acid either basic 0 acid
- an acid polar amino acid by a nonpolar, polar-neutral, or basic charged amino acids
- a basic polar amino acid by a nonpolar, polar-neutral, or acidic charged amino acids, among others.
- identity refers to the percentage of residues that are identical in the two sequences when the sequences are optimally aligned. If, in the optimal alignment, a position in a first sequence is occupied by the same amino acid residue as the corresponding position in the second sequence, the sequences exhibit identity with respect to that position.
- a number of mathematical algorithms for rapidly obtaining the optimal alignment and calculating identity between two or more sequences are known and incorporated into a number of available software programs. Examples of such programs include the MATCH-BOX, MULTAIN, GCG, FASTA, and ROBUST programs for amino acid sequence analysis, among others.
- Preferred software analysis programs include the ALIGN, CLUSTAL W, and BLAST programs (e.g., BLAST 2.1 , BL2SEQ, and later versions thereof).
- a weight matrix such as the BLOSUM matrixes (e.g., the BLOSUM45, BLOSUM50, BLOSUM62, and BLOSUM80 matrixes), Gonnet matrixes, or PAM matrixes (e.g., the PAM 30, PAM70, PAM120, PAM160, PAM250, and PAM350 matrixes), are used in determining identity.
- BLOSUM matrixes e.g., the BLOSUM45, BLOSUM50, BLOSUM62, and BLOSUM80 matrixes
- Gonnet matrixes e.g., the PAM 30, PAM70, PAM120, PAM160, PAM250, and PAM350 matrixes
- the BLAST programs provide analysis of at least two amino acid sequences, either by aligning a selected sequence against multiple sequences in a database (e.g., GenSeq), or, with BL2SEQ, between two selected sequences.
- BLAST programs are preferably modified by low complexity filtering programs such as the DUST or SEG programs, which are preferably integrated into the BLAST program operations. If gap existence costs (or gap scores) are used, the gap existence cost preferably is set between about -5 and -15. Similar gap parameters can be used with other programs as appropriate.
- the BLAST programs and principles underlying them are further described in, e.g., Altschul et al., "Basic local alignment search tool", 1990, J. Mol. Biol, v. 215, pages 403-410.
- the CLUSTAL W program can be used.
- the CLUSTAL W program desirably is run using “dynamic” (versus “fast") settings.
- Amino acid sequences are evaluated using a variable set of BLOSUM matrixes depending on the level of identity between the sequences.
- the CLUSTAL W program and underlying principles of operation are further described in, e.g., Higgins et al., "CLUSTAL V: improved software for multiple sequence alignment", 1992, CABIOS, 8(2), pages 189-191.
- the sequence of the first aspect of the invention has an identity of 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, or 95%, with respect to the sequence of formula (I) and maintains the ability to bind FoxP3 and inhibit FoxP3 activity in vitro and/or in vivo.
- the first aspect of the invention it is also encompassed a fragment of the peptide defined in (a) or in (b), wherein said fragment comprises a portion of at least 11 consecutive amino acids of the peptide defined in (a) or in (b).
- fragment relates to a peptide comprising a portion of at least 11 consecutive amino acids of the peptide of general formula (I) defined in section a), or of the variant defined in section b), i.e., a sequence of at least 11 contiguous amino acids comprised within the amino acid sequence of general formula (I) mentioned in said section a), or of the variant defined in section b), maintaining the capacity to bind to scurfin and inhibit FoxP3 activity in vitro and/or in vivo.
- the peptide of the invention is a fragment which differs from the peptide of general formula (I) defined in a), or from the variant defined in b), in the deletion of one or more contiguous amino acids in the C(t).
- the peptide of the invention is a fragment as defined in (c), which comprises 13 or 14 contiguous amino acids of the amino acid sequence of general formula (I) mentioned in section a), or of the variant defined in section b).
- the peptide of the invention is a fragment which comprises 13 or 14 contiguous amino acids of the amino acid sequence of general formula (I) mentioned in section a), or of the variant defined in section b), the one or two amino acids from the whole sequence of formula (I) being deleted from the carboxyl-terminal end.
- the 11-, 12-, 13- or 14- amino acid fragment can comprise modified N- and/or C- terminal end(s), either by the inclusion of a head-to-tail linker or by the chemical derivatization of the N-terminal end by alkylation and/or of the C-terminal end by amidation, as it has been explained above.
- the fragment can have free N- and/or C-terminal ends (i.e., in the form of -NH 2 and -COOH).
- the fragment will then include at least one of the residues identified in the peptide of formula (I) as " to %", wherein said at least one residue is selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L-Phe; X3 is an amino acid other than L-Ser; X4 is an amino acid other than L-Lys; and X5 is an amino acid other than L-Pro.
- the peptide of the invention is characterized by its capacity to bind FoxP3, and
- the capacity of a peptide to bind to FoxP3 can be determined by means of any suitable method which allows determining the binding between two molecules (e.g., by means of an affinity assay), said method comprising putting FoxP3 in contact with the peptide to be assayed under conditions allowing the binding of said peptide to FoxP3 and evaluating the binding between the peptide and FoxP3.
- said affinity assay can be carried out using the surface plasmon resonance (SPR) technique or similar techniques using radioactively labeled FoxP3, or, alternatively, radioactively labelling the peptide to be assayed.
- This type of affinity assay generally comprises putting FoxP3, e.g., immobilized in the wells of a plate, in contact with the peptide the capacity to bind to FoxP3 of which is to be known, and, after incubating for a suitable time period, analysing the binding of the peptide to FoxP3.
- the peptides with low affinity for FoxP3 are eliminated by means of washings whereas the peptides with higher affinity remain bound to FoxP3 and can be released by breaking the molecular interactions between both molecules, which can be carried out by lowering the pH, for example.
- the peptide of the invention is advantageously characterized not only by its capacity to bind to FoxP3 but also by its capacity to inhibit the biological activity of FoxP3 and, as a result, indirectly regulate or block, transiently or temporarily, the immunosuppressive activity of Treg lymphocytes.
- the present inventors have found that the peptides bind to the intermediate region of FOXP3 and inhibit FOXP3 homodimerization and F0XP3-AML1 heterodimerization.
- the capacity of a peptide to inhibit the biological activity of FoxP3 can be analysed, in vitro, by any suitable method illustrating such effect.
- the particular assays used in the present invention is based on determining the FoxP3/RunX1 heterodimerization (as disclosed in Ono M. et al., "Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1 ", Nature, vol.
- the pharmaceutically acceptable salts of the peptide of the invention are within the scope of this invention.
- pharmaceutically acceptable salt refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
- Pharmaceutically acceptable salts are well known in the art.
- Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, trifluoroacetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
- inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
- organic acids such as acetic acid, trifluoroacetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
- salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate,
- Salts derived from appropriate bases include alkali metal, alkaline earth metal, and ammonium.
- Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like.
- Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counter ions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate.
- the term "veterinary acceptable salt” means suitable for use in a non-human animal.
- alkyl encompasses both lineal and branched hydrocarbon chains.
- alkyl are: methyl (C1), ethyl (C2), propyl (C3), isopropyl (C3), isobutyl (C4), sec-butyl (C4), tert-butyl (C4), pentyl (C5), hexyl, (C6), heptyl (C7), octyl (C9), nonyl (C9), and decyl (C10), among others.
- alkenyl are: ethenyl (C2), propen-1-yl (C3), propen-2-yl (C3), buten-1-yl (C4) and hexen-1-yl (C6), among others.
- alkynyl are: ethynyl (C2), 1-propynyl (C3), 2-propynyl (C3) and 1-hexynyl (C6), among others.
- halogen refers to the group in the periodic table consisting of five chemically related elements: fluorine (F), chlorine (CI), bromine (Br), iodine (I), and astatine (At).
- F fluorine
- CI chlorine
- Br bromine
- I iodine
- At astatine
- Ri and f3 ⁇ 4 form a linker birradical as defined above.
- the peptide is one, wherein:
- one of f3 ⁇ 4 and f3 ⁇ 4' is hydrogen and the other is -COOH; or alternatively
- R3 and R 4 are as defined in the first aspect of the invention.
- the peptide is one, wherein:
- R2 and R2' are hydrogen and the other is -COOH; or alternatively Ri is hydrogen;
- R3 and R 4 are as defined in in the first aspect of the invention. or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- the peptide of formula (I) is one wherein Ri and f3 ⁇ 4 form a linker birradical as defined in the first aspect of the invention and: (i) Xi is L-Asp, X2 is L-Phe, X3 is L-Ser, X 4 is L-Lys, and X5 is L-Pro; or, alternatively,
- At least one of Xi to X5 is selected from the group consisting of: Xi is an amino acid other than L-Asp, X2 is an amino acid other than L-Phe, X3 is an amino acid other than L-Ser, X4 is an amino acid other than L-Lys, and X5 is an amino acid other than L-Pro; and the remaining X's amino acids represent any amino acid.
- the peptide of formula (I) is one wherein
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is L-Asp
- X2 is L-Phe
- X3 is L-Ser
- X 4 is L-Lys
- X5 is L-Pro
- At least one of Xi to X5 is selected from the group consisting of: Xi is an amino acid other than L-Asp, X2 is an amino acid other than L-Phe, X3 is an amino acid other than L-Ser, X4 is an amino acid other than L-Lys, and X5 is an amino acid other than L-Pro; and the remaining X's amino acids represent any amino acid.
- one of Xi to X5 is selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L-Phe; X3 is an amino acid other than L-Ser; X4 is an amino acid other than L-Lys; X5 is an amino acid other than L-Pro; and the other X radicals represent any amino acid.
- Xi is an amino acid other than L-Asp and X2 to X5 means any amino acid.
- X3 is an amino acid other than L-Ser
- Xi, X2, X4, and X5 represent any amino acid.
- X5 represents an amino acid other than L-Pro
- Xi to X 4 represent any amino acid.
- two of Xi to X5 are selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L-Phe; X3 is an amino acid other than L-Ser; X 4 is an amino acid other than L-Lys; X5 is an amino acid other than L-Pro; and the other X radicals represent any amino acid.
- Xi is an amino acid other than L-Asp
- X3 is an amino acid other than L-Ser
- X2, X4 and X5 represent any amino acid.
- Xi is an amino acid other than L-Asp
- X5 is an amino acid other L-Pro
- X2, X3, and X 4 represent any amino acid.
- three of Xi to X5 are selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L- Phe; X3 is an amino acid other than L-Ser; X 4 is an amino acid other than L-Lys; X5 is an amino acid other than L-Pro; and the other X radicals represent any amino acid.
- Xi is an amino acid other than L-Asp; X3 is an amino acid other than L-Ser; X5 is an amino acid other than L-Pro; and X2 and X 4 represent any amino acid.
- the present inventors have found that when the peptide of the invention comprises both a linker birradical and at least one mutation in at least one of the positions Xi to X5 (i.e., at least one of Xi to X5 is selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L-Phe; X3 is an amino acid other than L-Ser; X 4 is an amino acid other than L-Lys; X5 is an amino acid other than L-Pro), a synergistic effect in the binding to FoxP3 is achieved.
- positions 2 and 5 of the native p60 sequence e.g., sequence SEQ ID NO: 42
- an increase of about 400% in the binding to FoxP3 was achieved with respect to SEQ ID NO: 1.
- native p60 sequence were cycled such as the amino and carboxy terminal groups were forming a head-to-tail linker (i.e., sequence SEQ ID NO: 49)
- p60 peptide was modified to include both, the two mutations (at positions 2 and 5) and the cyclization, such as the amino and carboxy terminal groups were forming a head-to-tail linker (i.e., sequence SEQ ID NO: 50), the binding to FoxP3 was increased more than 2100% with respect to p60 sequence. That is, the combination of a staple and one or more mutations (amino acid substitutions) at any one of the positions Xi to X5 confers a remarkable improvement in the binding to FoxP3. These data further supports the critical role of the head-to-tail staples in improving the efficiency of p60 peptide.
- the peptide is one of formula (I) wherein Ri and form a birradical linker as defined in the first aspect of the invention, and at least one of Xi to X5 is selected from the group consisting of: Xi is an amino acid other than L-Asp; X2 is an amino acid other than L-Phe; X3 is an amino acid other than L-Ser; X4 is an amino acid other than L-Lys; Xs is an amino acid other than L-Pro; and the remaining X's radicals represent any amino acid.
- Xi is an amino acid other than L-Asp
- X2 is an amino acid other than L-Phe
- X3 is an amino acid other than L-Ser
- X 4 is an amino acid other than L-Lys
- X5 is an amino acid other than L-Pro
- the remaining X radicals represent any amino acid.
- the present inventors have surprisingly found that a substantial improvement in FoxP3 binding occurs when at least one of Xi to X5 is a D-amino acid.
- Xi was a D-Asp residue (instead of a L-Asp residue, which is the one at position 2 in p60 sequence), there was a 2-fold increase in FoxP3 binding.
- At least one of Xi to X5 is a D-amino acid.
- one, two or three of Xi to X5 is/are D-amino acids.
- the present inventors have also surprisingly found that when the substitution of amino acids at positions 2, 3, 5, 8, and 11 , is for a non-conservative amino acid, the improvement in the ability to bind to FoxP3 is even higher when compared to other conservative substitutions.
- At least one of the amino acids Xi to X5 is selected from the group consisting of: Xi is an amino acid which is non-conservative with respect to L-Asp; X2 is an amino acid which is non-conservative with respect to L-Phe; X3 is an amino acid which is non-conservative with respect to L-Ser; X4 is an amino acid which is non- conservative with respect to L-Lys; and X5 is an amino acid which is non-conservative with respect to L-Pro.
- the peptide is one of formula (I) wherein Ri and R2 form a birradical linker as defined in the first aspect of the invention, and at least one of Xi to X5 is selected from the group consisting of: Xi is an amino acid which is non-conservative with respect to L-Asp; X2 is an amino acid which is non-conservative with respect to L-Phe; X3 is an amino acid which is non-conservative with respect to L-Ser; X 4 is an amino acid which is non-conservative with respect to L-Lys; and X5 is an amino acid which is non-conservative with respect to L-Pro.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X2 is an amino acid which is non-conservative with respect to L-Phe
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X 4 is an amino acid which is non-conservative with respect to L-Lys
- X5 is an amino acid which is non- conservative with respect to L-Pro.
- the peptide is one wherein one of Xi to X5 is a non-conservative amino acid residue as defined above.
- the peptide is one wherein Ri and R2 form a linker birradical as defined above, and one of Xi to X5 is a non-conservative amino acid residue as defined above.
- the peptide is one of formula (I) wherein: Ri is hydrogen;
- R3 and R 4 are as defined in the first aspect of the invention; one of Xi to X5 is a non-conservative amino acid residue as defined above; and
- one of Xi to X5 is a non-conservative amino acid residue as defined above;
- one of Xi to X5 is a non-conservative amino acid residue as defined above;
- the peptide of formula (I) is one wherein just one of Xi to X5 is a non-conservative amino acid residue and the other X's radicals are conservative amino acid residues.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X 2 to X5 represent any amino acid.
- Ri is H
- X 2 represents L-Phe
- X3 represents L-Ser
- X 4 represents L-Lys
- X5 represents L-Pro
- Xi represents a non-polar amino acid
- Xi is selected from: Gly, Val, Leu, He, Pro, Phe, Trp, Met (either with D- or L-configuration).
- X3 is an amino acid which is non- conservative with respect to L-Ser and Xi, X2, X ⁇ and X5 represent any amino acid.
- X3 is the only non-conservative amino acid residue; and Xi, X2, X ⁇ and X5 represent conservative amino acid residues with respect L-Asp, L-Phe, L-Lys and L-Pro, respectively.
- X5 is an amino acid which is non- conservative with respect to L-Pro and Xi to X 4 represent any amino acid.
- X5 is the only non-conservative amino acid residue; and Xi to X 4 represent conservative amino acid residues with respect to L-Asp, L-Phe, L-Ser, and L- Lys, respectively.
- the peptide of formula (I) is one wherein Ri and R2 form a linker birradical as defined in the first aspect of the invention, Xi is an amino acid which is non-conservative with respect to L-Asp, and X2 to X5 represent any amino acid.
- the peptide of formula (I) is one wherein Ri and R2 form a linker birradical as defined in the first aspect of the invention, X3 is an amino acid which is non-conservative with respect to L-Ser and Xi, X2, X 4 and X5 represent any amino acid.
- the peptide of formula (I) is one wherein Ri and R2 form a linker birradical as defined in the first aspect of the invention, X5 is an amino acid which is non-conservative with respect to L-Pro and Xi to X 4 represent any amino acid.
- the peptide is one of formula (I) wherein:
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp.
- Xi is an amino acid which is non-conservative with respect to L-Asp.
- X2 to X5 represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp
- X2 to X5 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention; Xi is an amino acid which is non-conservative with respect to L-Asp; and,
- X2 to X5 represent any amino acid; or, alternatively,
- f3 ⁇ 4 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp
- X2 to X5 represent any amino acid.
- the peptide is one of formula (I) wherein:
- R3 and R 4 are as defined in the first aspect of the invention.
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- Xi , X2, and X 4 to X5 represent any amino acid; or, alternatively,
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- Xi , X2, and X* to X5 represent any amino acid; or, alternatively,
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- Xi , X2, and X4 to X5 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- Xi , X2, and X 4 to X5 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention, X3 is an amino acid which is non-conservative with respect to L-Ser; and Xi, X2, X4 and X5 represent any amino acid.
- the peptide is one of formula (I) wherein:
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi to X 4 represent any amino acid; or, alternatively,
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi to X 4 represent any amino acid; or, alternatively,
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi to X4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi to X4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi to X 4 represent any amino acid.
- the peptide is one wherein two of Xi to X5 are non-conservative amino acid residues as defined above.
- the peptide is one wherein Ri and R2 form a birradical linker as defined in the first aspect of the invention, and two of Xi to X5 are non- conservative amino acid residues as defined above.
- the peptide is one wherein: Ri is hydrogen;
- Xi to X5 are non-conservative amino acid residues as defined above, and the other X's radicals represent any amino acid; or, alternatively,
- Xi to X5 are non-conservative amino acid residues as defined above, and the other X's radicals represent any amino acid; or alternatively,
- Xi to X5 are non-conservative amino acid residues as defined above, and the other X's radicals represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- two of Xi to X5 are non-conservative amino acid residues as defined above, and the other X's radicals represent any amino acid; or, alternatively, .
- R3 and R 4 are as defined above;
- Xi to X5 are non-conservative amino acid residues as defined above.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X3 is an amino acid which is non-conservative with respect to L-Ser
- the remaining X2, X 4 , and X5 represent any amino acid.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X3 is an amino acid which is non-conservative with respect to L-Ser
- the remaining X2, X 4 , and X5 represent conservative amino acids with respect L- Phe, L-Lys, and L-Pro, respectively.
- Xi and X3 are selected from the group consisting of: D- or L-Gly, D- or L-Val, D- or L-Leu, D- or L- lle, D- or L-Phe, D- or L-Pro, D- or L-Trp, D- and L- Met.
- the peptide is one wherein:
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser; and the remaining X2, X 4 , and X5 represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent any amino acid.
- the peptide is one wherein:
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent conservative changes with respect to L-Phe, L-Lys and L-Pro, respectively; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent conservative changes with respect to L-Phe, L-Lys and L-Pro, respectively; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent conservative changes with respect to L-Phe, L-Lys and L-Pro, respectively; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent conservative changes with respect to L-Phe, L-Lys and L-Pro, respectively; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X2, X 4 , and X5 represent conservative changes with respect to L-Phe, L-Lys and L-Pro, respectively.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid.
- the peptide is one wherein:
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid
- X2 and X 4 represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid
- X2 and X 4 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid
- X2 and X4 represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid
- X2 and X 4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a non-polar amino acid or a basic polar amino acid; and X2 and X 4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser.
- X5 is a non-polar amino acid or a basic or acidic polar amino acid.
- R2' is hydrogen
- Xi, X3, and X5 represent the same non-polar amino acid with the same configuration
- X2 is L-Phe
- X* is L-Lys
- Xi, X3 and X5 are selected from the group consisting of: Gly, Val, Leu, He, Pro, Phe, Trp and Met (either with L- or D-configuration).
- the peptide is one wherein three of Xi to X5 are non-conservative amino acid residues as defined above. In another embodiment of the first aspect of the invention, optionally in combination with any one of the embodiments provided above or below, the peptide is one wherein:
- Ri and R2 form a birradical linker as defined above;
- Xi to X5 are non-conservative amino acid residues as defined above; and the remaining X's radicals represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi to X5 are non-conservative amino acid residues as defined above; and the remaining X's radicals represent any amino acid; or, alternatively,
- Xi to X5 are non-conservative amino acid residues as defined above; and the remaining X's radicals represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi to X5 are non-conservative amino acid residues as defined above; and the remaining X's radicals represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi to X5 are non-conservative amino acid residues as defined above; and the remaining X's radicals represent any amino acid; or, alternatively,
- R3 and R 4 are as defined above;
- Xi to X5 are non-conservative amino acid residues as defined above.
- Xi is an amino acid which is non- conservative with respect to L-Asp
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro.
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X4 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- Xs is an amino acid which is non-conservative with respect to L-Pro;
- X2 and X 4 represent any amino acid; or, alternatively
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- Xs is an amino acid which is non-conservative with respect to L-Pro;
- X2 and X 4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X 4 represent any amino acid.
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is an amino acid which is non-conservative with respect to L-Pro
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively.
- Xi is an amino acid which is non- conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser; and
- X5 is a nonpolar amino acid.
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X4 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent any amino acid; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent any amino acid; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent any amino acid; or, alternatively,
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X4 represent any amino acid.
- Ri and R2 form a birradical linker as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively, Ri is hydrogen;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- R3 and R 4 are as defined in the first aspect of the invention.
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid
- X2 and X4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- R3 and R 4 are as defined above;
- Xi is an amino acid which is non-conservative with respect to L-Asp;
- X3 is an amino acid which is non-conservative with respect to L-Ser
- X5 is a nonpolar amino acid; and X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively.
- Ri is hydrogen
- Xi is selected from a non-polar amino acid, a polar neutral amino acid and a basic amino acid;
- X3 is an amino acid selected from an acid and a basic amino acid;
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- Xi is selected from a polar neutral amino acid and a basic amino acid
- X3 is an amino acid selected from a non-polar, an acid and a basic amino acid
- X5 is a nonpolar amino acid
- X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- Xi is selected from Gly, Ala, Val, Leu, He, Phe, Pro, Trp, Met (either with L- or D-configuration), a polar neutral amino acid and a basic amino acid;
- X3 is an amino acid selected from Gly, Val, Leu, lie, Phe, Pro, Trp, Met (either with L- or D- configuration), an acid and a basic amino acid;
- X5 is a nonpolar amino acid
- X2 and X4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively; or, alternatively,
- Xi is selected from Gly, Val, Leu, He, Phe, Pro, Trp, Met (either with L- or D-configuration), a polar neutral amino acid and a basic amino acid;
- X3 is an amino acid selected from Gly, Ala, Val, Leu, lie, Phe, Pro, Trp, Met (either with L- or D- configuration), an acid and a basic amino acid;
- X5 is a nonpolar amino acid; and X2 and X 4 represent conservative amino acids with respect to L-Phe and L-Lys, respectively.
- At least one of Xi to X5 is a D-amino acid residue.
- R 5 to R22 represent hydrogen
- one of R3 and R 4 is hydrogen and the other is (Ci-Cio)alkyl.
- R3 and R 4 are the same or different and represent hydrogen.
- R3 and R 4 are the same or different and represent (Ci-Cio)alkyl.
- R3 is hydrogen and R 4 is (Ci-C5)alkyl.
- R3 and R 4 are the same (Ci-Cio)alkyl. In another embodiment of the first aspect of the invention, optionally in combination with any one of the embodiments provided above or below, R3 and R 4 are the same (Ci-Cs)alkyl. In another embodiment of the first aspect of the invention, optionally in combination with any one of the embodiments provided above or below, R3 is hydrogen an ⁇ 3 ⁇ 4 is -CH3. In another embodiment of the first aspect of the invention, optionally in combination with any one of the embodiments provided above or below, R3 and R 4 are the same and represent -CH3.
- substituted (Ci-Cio)alkyl means that the (Ci-Cio)alkyl is substituted by one or two radicals, the same or different, selected from halogen, (Ci-Cs)alkyl, and a (C3-C6)cycloakyl radical.
- substituted (C2- Cio)alkenyl means that the (C2-Cio)alkenyl is substituted by one or two radicals selected from the group consisting of: halogen, (Ci-Cs)alkyl, and a (C3-C6)cycloakyl.
- substituted (C2- Cio)alkynyl means that the (C2-Cio)alkynyl is substituted by one or two radicals selected from the group consisting of: halogen, (Ci-Cs)alkyl, and a (C3-C6)cycloakyl.
- the peptide is selected from the group consisting of SEQ ID NO: 2 to SEQ ID NO: 54:
- the peptide is selected from the group consisting of: SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 38, SEQ ID NO: 41 , SEQ ID NO: 43 to SEQ ID NO: 45, and SEQ ID NO: 49 to SEQ ID NO: 54.
- the peptide is selected from the group consisting of: SEQ ID NO: 6 to 12, SEQ ID No: 15 to 37, SEQ ID NO: 46 and SEQ ID NO: 47.
- the present invention provides a peptide of formula (I) as defined above, wherein Xi represents a D-amino acid or, alternatively, Xi is a non-conservative amino acid with respect to L-Asp, the non-conservative amino acid being selected from non-polar, neutral polar and basic polar amino acid residues.
- Xi represents a D-amino acid or, alternatively, Xi is a non-conservative amino acid with respect to L-Asp, the non-conservative amino acid being selected from non-polar, neutral polar and basic polar amino acid residues.
- Xi represents a non-conservative amino acid with respect to L-Asp; and X 2 to X5 represent amino acid residues, the same or different.
- Xi is an amino acid residue, either in L or D- configuration, selected from the group consisting of: Ala, Ser, Tyr, Trp, Asn and Lys.
- X2 and X5 represent non-polar amino acid residues, the same or different; X3 represents a neutral polar amino acid residue; and X 4 represents a basic amino acid residue.
- X2 is L- or D-Phe, X3 is L- or D-Ser, X 4 is L- or D-Lys, and X5 is L- or D-Pro.
- X2 is L-Phe
- X3 is L-Ser
- X 4 is L-Lys
- X5 is L-Pro
- Xi is an amino acid residue, either in L or D- configuration, selected from the group consisting of: Ala, Ser, Tyr, Trp, Asn and Lys, X2 and X5 represent non-polar amino acid residues, the same or different; X3 represents a neutral polar amino acid residue; and X 4 represents a basic amino acid residue.
- Xi is an amino acid residue, either in L or D-configuration, selected from the group consisting of: Ala, Ser, Tyr, Trp, Asn and Lys, X2 is L- or D-Phe, X3 is L- or D- Ser, X 4 is L- or D-Lys, and X5 is L- or D-Pro.
- Xi is an amino acid residue, either in L or D-configuration, selected from the group consisting of: Ala, Ser, Tyr, Trp, Asn and Lys, X2 is L-Phe, X3 IS L-Ser, X 4 is L-Lys, and X5 is L-Pro.
- Ri is hydrogen
- when Ri is H; one of R2 and R2' is hydrogen and the other is -C( 0)OH;
- X2 represents L-Phe;
- X3 represents L-Ser,
- X 4 represents L-Lys;
- X5 represents L-Pro; and
- Xi represents a non-polar amino acid, then Xi is selected from: Gly, Val, Leu, He, Pro, Phe, Trp, and Met (either with D- or L-configuration).
- the amino acid residue at N(t) and/or the amino acid residue at C(t) has D-configuration.
- the peptide of formula (I) is selected from the group consisting of: SEQ ID NO: 5 to 9, 11 to 14, and 46 to 48.
- the present invention provides a peptide of formula (I) as defined in the first aspect of the invention, wherein X2 represents a D-amino acid or, alternatively, X2 represents a non-conservative amino acid with respect to L-Phe, the non-conservative amino acid being selected from a neutral polar amino acid, an acidic polar amino acid and a basic polar amino acid.
- X2 represents a D-amino acid or, alternatively, X2 represents a non-conservative amino acid with respect to L-Phe, the non-conservative amino acid being selected from a neutral polar amino acid, an acidic polar amino acid and a basic polar amino acid.
- X2 represents a non-conservative amino acid with respect to L-Phe
- Xi, and X3 to X5 represent amino acid residues, the same or different.
- X2 represents a neutral polar amino acid.
- X2 is L- or D-Tyr.
- Xi represents an acidic amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue.
- Xi represents an acidic amino acid residue
- X2 represents a neutral polar amino acid
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue
- Xi represents an acidic amino acid residue
- X2 represents L- or D-Tyr
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue
- Xi is L- or D-Asp
- X2 represents a neutral polar amino acid
- X3 is L- or D-Ser
- X 4 is L- or D-Lys
- X5 is L- or D-Pro.
- Xi is L-Asp; X2 represents a neutral polar amino acid; X3 is L-Ser; X 4 is L-Lys, and X5 is L-Pro.
- Xi is L-Asp; X2 represents L- or D-Tyr; X3 IS L-Ser; X 4 is L-Lys, and X5 is L-Pro.
- Ri is hydrogen
- the amino acid residue at N(t) and/or the amino acid residue at C(t) has D-configuration.
- the present invention provides a peptide wherein X3 represents a D- amino acid or, alternatively, X3 represents a non-conservative amino acid with respect to L-Ser which is selected from non-polar, acidic polar and basic polar amino acid residues.
- X3 represents a D- amino acid or, alternatively, X3 represents a non-conservative amino acid with respect to L-Ser which is selected from non-polar, acidic polar and basic polar amino acid residues.
- X3 represents a non-conservative amino acid with respect to L-Ser; and Xi, X2, X4 , and X5 represent amino acid residues, the same or different.
- X3 represents a non-conservative amino acid with respect to L-Ser selected from a non-polar amino acid and a basic polar amino acid; In an embodiment of the fourteenth aspect of the invention, optionally in combination with any one of the embodiments provided above or below, X3 is an amino acid residue, either in L or D- configuration, selected from the group consisting of: Ala, Arg, Trp, Glu, and Lys.
- Xi represents an acidic amino acid residue
- X2 represents a non-polar amino acid residue
- X4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue
- Xi represents an acidic amino acid residue
- X2 represents a non-polar amino acid residue
- X3 is selected from the group consisting of: Ala, Arg, Trp, Glu, and Lys
- X4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue.
- Xi is L- or D-Asp
- X2 IS L- or D-Phe
- X 4 is L- or D-Lys
- X5 is L- or D-Pro.
- Xi is L- or D-Asp
- X2 IS L- or D-Phe
- X3 is selected from the group consisting of: Ala, Arg, Trp, Glu, and Lys
- X 4 is L- or D-Lys
- X5 is L- or D-Pro.
- Xi is L-Asp
- X2 is L-Phe
- X3 is selected from the group consisting of: Ala, Arg, Trp, Glu, and Lys
- X 4 is L-Lys
- X5 is L-Pro.
- the amino acid residue at N(t) and/or the amino acid residue at C(t) has D-configuration.
- the peptide is one of sequence SEQ ID NO: 19 to 20, 22 to 23, 25, or 39.
- the present invention provides a peptide of formula (I) wherein X4
- X 4 is selected from His and Arg, either in L- or D-configuration.
- X 4 is L-His or L-Arg.
- Xi represents an acidic amino acid residue
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X5 represents a non-polar amino acid residue
- Xi represents an acidic amino acid residue
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 is selected from His and Arg, either in L- or D-configuration
- X5 represents a non-polar amino acid residue.
- Xi represents an acidic amino acid residue
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 is L-His or L-Arg
- X5 represents a non-polar amino acid residue.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D- Ser
- X5 is L- or D-Pro.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D- Ser
- X4 is selected from His and Arg, either in L- or D-configuration
- X5 is L- or D-Pro.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D- Ser
- X4 is L-His or L-Arg
- X5 is L- or D-Pro.
- Xi is L-Asp
- X2 is L-Phe
- X3 is L-Ser
- X5 is L- Pro
- the peptide is one of sequence SEQ ID NO: 28 or 29.
- the present invention provides a peptide of formula (I) wherein X5 represents a D-amino acid or, alternatively, X5 represents a non-conservative amino acid with respect to L-Pro which is selected from a neutral polar amino acid and a basic polar amino acid. All the embodiments provided above regarding the meaning of Ri to R 4 o and Xi to X 4 under the first aspect of the invention, are also embodiments of the peptide of the sixteenth aspect of the invention.
- X5 represents a non-conservative amino acid with respect to L-Pro; and Xi to X 4 represent amino acid residues, the same or different.
- X 5 is a L- or D-basic amino acid.
- X 5 is an amino acid residue, either in L- or D-configuration, selected from the group consisting of: Arg, Asn, Tyr, and Lys.
- Xi represents an acidic polar amino acid
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- Xi represents an acidic polar amino acid
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 is a L- or D-basic amino acid.
- Xi represents an acidic polar amino acid
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 is an amino acid residue, either in L- or D-configuration, selected from the group consisting of:, Arg, Asn, Tyr, and Lys.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D-Lys.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D-Lys
- X5 is a L- or D-basic amino acid.
- Xi is L- or D-Asp
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D-Lys
- X5 is an amino acid residue, either in L- or D-configuration, selected from the group consisting of: Arg, Asn, Tyr, and Lys.
- Xi is L-Asp
- X2 is L-Phe
- X3 is L-Ser
- X4 is L-Lys.
- Xi is L-Asp
- X2 is L-Phe
- X3 is L-Ser
- X 4 is L-Lys
- X5 is a L- or D-basic amino acid.
- Xi is L-Asp
- X2 is L-Phe
- X3 is L-Ser
- X 4 is L-Lys
- X5 is an amino acid residue, either in L- or D-configuration, selected from the group consisting of: Arg, Asn, Tyr, and Lys.
- the amino acid residue at N(t) and/or the amino acid residue at C(t) has D-configuration.
- the peptide is selected from the group consisting of SEQ ID NO: 31 , 32, 34, 35, 37, and 38.
- the present invention provides a peptide of formula (I) as defined in the first aspect of the invention, wherein Xi and X3 are the same or different and represent a D- or L-non-polar amino acid. All the embodiments provided above regarding the meaning of Ri to R 4 o, X2 and X 4 to X5 under the first aspect of the invention, are also embodiments of the peptide of seventeenth aspect of the invention.
- Xi and X3 are L-Ala or D-Ala.
- Ri is H
- X2 represents L-Phe
- X4 represents L-Lys
- X5 represents L-Pro
- both Xi and X3 represent the same non-polar amino acid with the same
- Xi and X3 are selected from the group consisting of: D- or L-Gly, D- or L-Val, D- or L-Leu, D- or L-lle, D- or L-Phe, D- or L-Pro, D- or L-Trp, D- and L- Met.
- Ri and R2 form a linker birradical as defined above.
- Ri is hydrogen
- R2 and R2' is hydrogen and the other is -COOH.
- X2 represents a non-polar amino acid residue
- X 4 represents a basic amino acid residue
- X5 represents a non-polar amino acid residue
- Xi and X3 represent L- or D-Ala; X2 represents a non-polar amino acid residue; X 4 represents a basic amino acid residue; and X5 represents a non-polar amino acid residue.
- X2 is L- or D-Phe
- X4 is L- or D-Lys
- X5 is L- or D-Pro
- Xi and X3 represent L- or D-Ala
- X2 is L- or D-Phe
- X4 is L- or D-Lys
- X5 is L- or D-Pro.
- X2 is L-Phe
- X 4 is L-Lys
- X5 is L-Pro.
- Xi and X3 represent L- or D-Ala
- X2 is L-Phe
- X 4 is L-Lys
- X5 is L-Pro
- the present invention provides a peptide of formula (I) as defined in the first aspect of the invention, wherein Xi represents a non-conservative amino acid with respect to L-Asp, and X5 represents a non-polar amino acid residue.
- Xi represents a non-conservative amino acid with respect to L-Asp
- X5 represents a non-polar amino acid residue.
- Xi and Xs are the same or different and represent a D- or L-non-polar amino acid.
- Xi and X5 represent D- or L-Ala.
- Xi and X5 represent D-Ala.
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- Xi and X5 represent the same or different and represent a D- or L-non-polar amino acid
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X* represents a basic amino acid residue
- Xi and X5 represent D- or L-Ala
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X4 represents a basic amino acid residue
- Xi and X5 represent D-Ala
- X2 represents a non-polar amino acid residue
- X3 represents a neutral polar amino acid residue
- X 4 represents a basic amino acid residue
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D-Lys.
- Xi and Xs are the same or different and represent a D- or L-non-polar amino acid
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D- Lys.
- Xi and X5 represent D- or L-Ala
- X2 is L- or D-Phe
- X 3 is L- or D-Ser
- X 4 is L- or D-Lys.
- Xi and X5 represent D-Ala
- X2 is L- or D-Phe
- X3 is L- or D-Ser
- X 4 is L- or D-Lys.
- Xi and Xs are the same or different and represent a D- or L-non-polar amino acid
- X2 is L-Phe
- X3 is L-Ser
- X 4 is L-Lys.
- Xi and X5 represent D- or L-Ala
- X2 is L-Phe
- X3 is L-Ser
- 4 is L-Lys.
- Xi and X5 represent D-Ala
- X2 is L-Phe
- X3 is L-Ser
- X4 is L-Lys.
- Ri is hydrogen
- one of ⁇ 3 ⁇ 4 and R2' is hydrogen and the other is -COOH.
- the present invention provides a peptide of formula (I) as defined in the first aspect of the invention, wherein two or more of ⁇ , X3, and X5 are non-conservative amino acids with respect to L-Asp, L-Ser, and L-Pro, respectively. All the embodiments provided above regarding the meaning of Ri to R 4 o, X2 and X 4 under the first aspect of the invention, are also embodiments of the peptide of nineteenth aspect of the invention.
- the present invention provides a peptide of formula (I) as defined in the first aspect of the invention, wherein Xi and X3 represent non-conservative amino acids with respect to L-Asp, and L-Ser respectively, and X5 represents a non-polar amino acid residue.
- Xi and X3 represent non-conservative amino acids with respect to L-Asp, and L-Ser respectively
- X5 represents a non-polar amino acid residue.
- Xi and X3 are the same or different and represent a D- or L-non-polar amino acid.
- Xi , X3, and Xs are D-Ala.
- X2 represents a non-polar amino acid residue; and X* represents a basic amino acid residue.
- Xi , X3, and X5 represent D-Ala, X2
- X 4 represents a basic amino acid residue
- X2 is L- or D-Phe
- A is L- or D-Lys.
- Xi , X3, and X5 represent D-Ala
- X2 is L- or D- Phe
- X 4 is L- or D-Lys
- X2 is L-Phe
- X 4 is L-Lys
- ⁇ , X3, and Xs are D-Ala
- X2 is L-Phe
- X* is L-Lys.
- Ri and R2 form a linker birradical as defined in the first aspect of the invention.
- the peptides of the present invention can be prepared following routine protocols such as by solid phase synthesis, wherein successive steps of (a) deprotecting the amino acid to be bound, and (b) protected-amino acid coupling cycles are performed.
- the protecting group can be a N-protecting group, C-protecting group or a side-chain protecting group. There are commercially available protecting groups belonging to all three categories.
- amino acid protecting groups are the N-protecting groups t-Boc (or Boc) and Fmoc.
- t-Boc or Fmoc is used in the synthesis of a peptide, the main four steps are: (a) protecting group is removed from the trailing amino acids (commercially available) in a deprotection reaction; (b) deprotection reagents are washed away to provide a clean coupling environment, (c) protected amino acids dissolved in a solvent such as dimethylformamide (DMF) combined with coupling reagents are pumped through the synthesis column, and (d) coupling reagents are washed away to provide clean deprotection
- a solvent such as dimethylformamide (DMF)
- the deprotection reagent and the coupling reagent is one or another.
- the skilled person in the art based on his general knowledge, and by routine methods, can optimize the particular conditions, if necessary.
- the process comprises, in a first stage, the synthesis of the peptide sequence for example by solid phase synthesis and, in a second stage, a cyclization reaction between the free amino and carboxy terminal groups of the peptide resulting from the synthesis.
- the conditions and reagents to be used in the cyclization step can be routinely determined.
- the process for preparing the peptide comprises a step of reacting: an amine with a carboxylic group (in case of the amide), a carboxylic acid with and alcohol (in case of an ester), by oxidation of a secondary alcohol (in case of a ketone) or by dehydration of an alcohol (in case of an ether).
- an amine with a carboxylic group in case of the amide
- a carboxylic acid with and alcohol in case of an ester
- oxidation of a secondary alcohol in case of a ketone
- dehydration of an alcohol in case of an ether
- the present invention provides a construct.
- the term "cell-penetrating agent” comprises any agent that facilitates the delivery of the peptide of the invention across a cell membrane without negatively affecting the ability of the peptide to bind and inhibit FoxP3.
- the cell-penetrating agent is a cell penetrating peptide.
- the construct corresponds to a fusion protein.
- CPP cell penetrating peptide
- the “cargo” is associated to peptides via the C(t) or N(t), either through chemical linkage via covalent bonds or through non-covalent interactions.
- the function of the CPPs are to deliver the cargo into cells, a process that commonly occurs through endocytosis with the cargo delivered to delivery vectors for use in research and medicine. Current use is limited by a lack of cell specificity in CPP-mediated cargo delivery and insufficient understanding of the modes of their uptake.
- CPPs typically have an amino acid composition that either contains a high relative abundance of positively charged amino acids such as lysine or arginine or has sequences that contain an alternating pattern of polar/charged amino acids and non-polar, hydrophobic amino acids. These two types of structures are referred to as polycationic or amphipathic, respectively.
- a third class of CPPs are the hydrophobic peptides, containing only nonpolar residues, with low net charge or have hydrophobic amino acid groups that are crucial for cellular uptake.
- the conjugation of the CPP to the peptide provided in the present invention can be performed following well-known routine protocols, such as solid phase synthesis or solution selective capping, (cf. Copolovici D. M.
- any cell penetrating peptide with capacity to internalize a peptide in a cell can be used; nevertheless, in a particular embodiment, said carrier peptide is a peptide comprising a "PTD" ("protein transduction domain") segment.
- PTD protein transduction domain
- proteins comprising protein transduction domains include the human immunodeficiency virus 1 (HIV-1) TAT ("transacting translational protein") protein, the Drosophila antennapedia homeotic transcription factor (Antp) and the herpesvirus simplex 1 (HSV-1) VP22 DNA-binding protein, although it has also been suggested that other proteins have this property of internalizing peptides in cells, such as influenza virus hemagglutinin, lactoferrin, fibroblast growth factor-1 , fibroblast growth factor-2 and the Hoxa-5, Hoxb-4 and Hoxc-8 proteins (Ford K.G. et al., Gene Therapy, 2001 ; 8:1-4).
- the peptide of the invention can be bound to any one of the (amino or carboxyl) terminal ends of the carrier peptide with capacity to internalize a peptide of the invention in a cell. Therefore, in a particular embodiment, the carboxyl-terminal end of the peptide of the invention is bound to the amino-terminal end of said carrier peptide, whereas in another particular embodiment, the amino-terminal end of the peptide of the invention is bound to the carboxyl-terminal end of said carrier peptide.
- the peptide of the invention may or may not be directly bound to the cell penetrating peptide. Therefore, in a particular embodiment, optionally in combination with any one of the embodiments provided above or below, the peptide of the invention is directly bound to the cell penetrating peptide.
- the construct of the second aspect of the invention further comprises a spacer peptide located between the peptide as defined in the first aspect of the invention and the cell penetrating peptide.
- Said spacer peptide is advantageously a peptide with structural flexibility, such as a peptide giving rise to a non-structured domain.
- any peptide with structural flexibility can be used as a spacer peptide; nevertheless, illustrative non- limiting examples of said spacer peptides include peptides containing repeats of amino acid moieties, e.g., of Gly and/or Ser, or any other suitable repeat of amino acid moieties.
- the cell-penetrating agent is a nanoparticle delivery system, which is known to be biocompatible and protect the active ingredient from degradation.
- nanoparticle refers to a particle with at least two dimensions at the nanoscale, particularly with all three dimensions at the nanoscale, where the nanoscale is the range about 1 nm to about 300 nm.
- the nanoparticle is substantially rod- shaped with a substantially circular cross-section, such as a nanowire or a nanotube
- the “nanoparticle” refers to a particle with at least two dimensions at the nanoscale, these two dimensions being the cross-section of the nanoparticle.
- Biodegradable nanoparticle delivery systems that increase intracellular uptake, e.g., polymeric and surface modified nanoparticles as described in US 2009/0136585 and , can also be used.
- Examples include poly DL-lactide-co-glycolide (PLGA) nanoparticles, e.g., surface-modified with known surface-modifying agents, such as heparin, dodecylmethylammonium bromide (DMAB), DEAE-Dextran, lipofectin, and fibrinogen, among others
- lipidic nanoparticle refers to a nanoparticle whose membrane is totally made of lipids.
- Suitable lipids include, without limitation, phospholipids such as phosphatidylcholines (“PC's”), phosphatidylethanolamines (“PE's”), phosphatidyilserines (“PS's”), phosphatidylglycerols (“PG's”), phosphatidylinositols (“Pi's”) and phosphatidic acids (“PA's”).
- PC's phosphatidylcholines
- PE's phosphatidylethanolamines
- PS's phosphatidyilserines
- PG's phosphatidylglycerols
- Pi's phosphatidylinositols
- PA's phosphatidic acids
- Such phospholipids generally have two acyl chains, these being either both saturated, both unsaturated or one saturated and one unsaturated; said chains include, without limitation: myristate, palmitate, stearate, oleate, linoleate, linolenate, arachidate, arachidonate, behenate and lignocerate chains.
- Phospholipids can also be derivatized, by the attachment thereto of a suitable reactive group. Such a group is generally an amino group, and hence, derivatized phospholipids are typically phosphatidylethanolamines.
- the different moieties suited to attachment to PE's include, without limitation: acyl chains, useful for enhancing the fusability of liposomes to biological membranes; peptides, useful for destabilizing liposomes in the vicinity of target cells; biotin and maleimido moieties, useful for linking targeting moieties such as antibodies to liposomes; and various molecules such as gangliosides, polyalkylethers, polyethylene glycols and organic dicarboxylic acids.
- Other lipids which can constitute the membrane of the nanopartide include, but are not limited to, cholesterol and DOPC.
- the lipidic nanopartide is selected from the group consisting of liposomes and solid-lipid nanopartide.
- the lipidic nanopartide is a liposome.
- solid lipid nanopartide refers to particles, typically spherical, with an average diameter between 10 to 1000 nanometers.
- Solid lipid nanoparticles possess a solid lipid core matrix that can solubilize lipophilic molecules.
- the lipid core is stabilized by surfactants (emulsifiers).
- lipid is used here in a broader sense and includes triglycerides (e.g. tristearin), diglycerides (e.g. glycerol bahenate), monoglycerides (e.g. glycerol monostearate), fatty acids (e.g. stearic acid), steroids (e.g. cholesterol), and waxes (e.g. cetyl palmitate). All classes of emulsifiers (with respect to charge and molecular weight) have been used to stabilize the lipid dispersion.
- liposome is to be understood as a self-assembling structure comprising one or more lipid bilayers, each of which comprises two monolayers containing amphipathic lipid molecules oppositely oriented.
- Amphipathic lipids comprise a polar
- hydrophobic headgroup region covalently linked to one or two non-polar (hydrophobic) acyl chains.
- Energetically unfavorable contacts between the hydrophobic acyl chains and the surrounding aqueous medium induce the amphipathic lipid molecules to arrange themselves such that their polar headgroups are oriented towards the bilayer's surface, while the acyl chains reorient towards the interior of the bilayer.
- An energetically stable structure is thus formed in which the acyl chains are effectively shielded from coming into contact with the aqueous environment.
- Liposomes can have a single lipid bilayer (unilamellar liposomes,"ULVs"), or multiple lipid bilayers (multilamellar liposomes,"MLVs"or"SPLVs"). Each bilayer surrounds, or encapsulates, an aqueous compartment. Given this encapsulation of aqueous volume within a protective barrier of lipid molecules, liposomes are able to sequester encapsulated molecules, e. g., nucleic acids, away from the degrading effects of factors, e. g., nuclease enzymes, present in the external environment.
- UUVs unilamellar liposomes
- MLVs multilamellar liposomes
- SPLVs single lipid bilayer
- Each bilayer surrounds, or encapsulates, an aqueous compartment. Given this encapsulation of aqueous volume within a protective barrier of lipid molecules, liposomes are able to sequester encapsul
- Liposomes can have a variety of sizes, e. g., an average diameter as low as 25 nm or as high as 10,000 nm or more. Liposome's size is affected by a number of factors, e. g., lipid composition and method of preparation, well within the purview of ordinarily skilled artisans to determine and account for, and is determined by a number of techniques, such as quasi-elastic light scattering, also within the skilled person in the art knowledge.
- Extrusion can be used to size reduce liposomes, that is to produce liposomes having a predetermined mean size by forcing the liposomes, under pressure, through filter pores of a defined, selected size.
- Tangential flow filtration can also be used to regularize the size of liposomes, that is, to produce a population of liposomes having less size heterogeneity, and a more homogeneous, defined size distribution.
- the peptide of the invention can be encapsulated within the particle using well-known methods in the state of the art, such as those disclosed in Tandrup Schmidt S. et al., "Liposome-Based Adjuvants for Subunit Vaccines: Formulation Strategies for Subunit Antigens and
- the cell-penetrating agents can be further functionalized by conjugating molecules with the ability of recognizing and binding to molecules on Treg cells' surface.
- the cell-penetrating agent also protects peptides of the invention against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems.
- a controlled release formulation including implants and microencapsulated delivery systems.
- Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Such formulations can be prepared using standard techniques, or obtained commercially.
- the fusion protein of the invention can optionally include an amino acid sequence useful for the isolation or purification of the fusion protein of the invention. Said sequence will be located in a region of the fusion protein of the invention which does not adversely affect the functionality of the peptide of the invention. Virtually any amino acid sequence which can be used to isolate or purify a fusion protein (generically called tag peptides) can be present in said fusion protein of the invention.
- said amino acid sequence useful for isolating or purifying a fusion protein can be, for example, an arginine tag (Arg-tag), a histidine tag (His-tag), FLAG-tag, Strep-tag, an epitope which can be recognized by an antibody, such as c-myc-tag, SBP-tag, S-tag, calmodulin-binding peptide, cellulose-binding domain, chitin-binding domain, glutathione S-transferase-tag, maltose-binding protein, NusA, TrxA, DsbA, Avi-tag or ⁇ -galactosidase, among others.
- Arg-tag arginine tag
- His-tag histidine tag
- FLAG-tag FLAG-tag
- Strep-tag an epitope which can be recognized by an antibody, such as c-myc-tag, SBP-tag, S-tag, calmodulin-binding peptide, cellulose-bind
- the fusion protein of the invention can be obtained by means of a coupling reaction of the peptide of the invention and of the cell penetrating peptide with capacity to internalize a peptide of the invention in a cell, which may have been obtained by conventional synthetic methods, such as those which have been previously mentioned (e.g., solid phase chemical synthesis), or by means of recombinant techniques.
- the present invention provides a combination comprising (a) the peptide of the invention or the construct as defined in the second aspect of the invention or both the peptide and the construct, and (b) one or more immunomodulatory compounds.
- immunomodulatory compound refers to a compound which induces, enhances, or suppresses an immune response.
- the one or more immunomodulatory compounds have an effect on cancer cells, i.e., the compound(s) are cancer immunomodulatory compounds.
- immunotherapies can be categorized as active, passive or hybrid (active and passive). These approaches exploit the fact that cancer cells often have molecules on their surface that can be detected by the immune system, known as tumour-associated antigens (TAAs); they are often proteins or other macromolecules (e.g. carbohydrates). Active immunotherapy directs the immune system to attack tumor cells by targeting TAAs. Passive immunotherapies enhance existing anti-tumor responses and include the use of monoclonal antibodies, lymphocytes and cytokines. Merghoub T. and colleagues provide a complete review about the cancer immunomodulatory compounds in the state of the art (Khalil D. N.
- the immunomodulatory compound(s) inhibit(s) or regulate(s) the immunosuppressive activity of different Treg lymphocytes.
- any compound inhibiting or regulating the immunosuppressive activity of Treg lymphocytes, independently of its mechanism of action (e.g., through the inhibition of scurfin or through other mechanisms), different from the peptides and constructs of the invention, can be present, if desired, in the combination of the third aspect of the invention.
- Illustrative non-limiting examples of alternative compounds inhibiting or regulating the activity of Treg lymphocytes, different from the peptides and constructs of the invention, which can be used together with the peptides and constructs of the invention include, although they are not limited to, anti-CD25, anti-CTLA4, anti-GITR antibodies, anti-PD-1 , anti-PD-L1 , anti-LAG3, anti-OX40, compounds inhibiting cytokines TGF-beta, IL-10 or IL-9, chemotherapeutic compounds such as cyclophosphamide fludarabine, or inhibitors of chemokines CCL17 or CCL22, among others.
- the present invention provides a veterinary or pharmaceutical composition
- a veterinary or pharmaceutical composition comprising a therapeutically effective amount of the peptide of the invention or of the construct of the second aspect of the invention or of the combination of the third aspect of the invention, together with at least one veterinary or pharmaceutically acceptable excipient.
- therapeutically effective amount refers to the amount of the peptide or construct or combination that, when administered, is sufficient to prevent development of, or alleviate to some extent, one or more of the symptoms of the disease which is addressed.
- the particular dose of compound administered according to this invention will of course be determined by the particular circumstances surrounding the case, including the compound administered, the route of administration, the particular condition being treated, and the similar considerations.
- pharmaceutically acceptable excipients or carriers refers to pharmaceutically acceptable materials, compositions or vehicles. Each component must be pharmaceutically acceptable in the sense of being compatible with the other ingredients of the pharmaceutical composition. It must also be suitable for use in contact with the tissue or organ of humans without excessive toxicity, irritation, allergic response, immunogenicity or other problems or complications commensurate with a reasonable benefit/risk ratio. Likewise, the term “veterinary acceptable” means suitable for use in contact with a non-human animal.
- Suitable pharmaceutically acceptable excipients are solvents, dispersion media, diluents, or other liquid vehicles, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like. Except insofar as any conventional excipient medium is incompatible with a substance or its derivatives, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component(s) of the pharmaceutical composition, its use is contemplated to be within the scope of this invention.
- compositions of the invention will vary, depending upon the identity, size, and/or condition of the subject treated and further depending upon the route by which the composition is to be administered.
- compositions include, but are not limited to, inert diluents, dispersing and/or granulating agents, surface active agents and/or emulsifiers, disintegrating agents, binding agents, preservatives, buffering agents, lubricating agents, and/or oils.
- Excipients such as colouring agents, coating agents, sweetening, and flavouring agents can be present in the composition, according to the judgment of the formulator.
- compositions containing the peptide or the construct or the combination of the invention can be presented in any dosage form, for example, solid or liquid, and can be administered by any suitable route, for example, oral, parenteral, rectal or topical route, for which they will include the pharmaceutically acceptable excipients necessary for the formulation of the desired dosage form, for example, ointments (lipogels, hydrogels, etc.), eye drops, aerosol sprays, injectable solutions, osmotic pumps, etc.
- suitable route for example, oral, parenteral, rectal or topical route, for which they will include the pharmaceutically acceptable excipients necessary for the formulation of the desired dosage form, for example, ointments (lipogels, hydrogels, etc.), eye drops, aerosol sprays, injectable solutions, osmotic pumps, etc.
- Exemplary diluents include, but are not limited to, calcium carbonate, sodium carbonate, calcium phosphate, dicalcium phosphate, calcium sulfate, calcium hydrogen phosphate, sodium phosphate lactose, sucrose, cellulose, microcrystalline cellulose, kaolin, mannitol, sorbitol, inositol, sodium chloride, dry starch, corn-starch, powdered sugar, and combinations thereof.
- Exemplary granulating and/or dispersing agents include, but are not limited to, potato starch, corn starch, tapioca starch, sodium starch glycolate, clays, alginic acid, guar gum, citrus pulp, agar, bentonite, cellulose and wood products, natural sponge, cation-exchange resins, calcium carbonate, silicates, sodium carbonate, cross-linked polyvinylpyrrolidone) (crospovidone), sodium carboxymethyl starch (sodium starch glycolate), carboxymethyl cellulose, cross-linked sodium carboxymethyl cellulose (croscarmellose), methylcellulose, pregelatinized starch (starch 1500), microcrystalline starch, water insoluble starch, calcium carboxymethyl cellulose, magnesium aluminium silicate (Veegum), sodium lauryl sulfate, quaternary ammonium compounds, and combinations thereof.
- crospovidone cross-linked polyvinylpyrrolidone
- sodium carboxymethyl starch sodium starch glycolate
- Exemplary binding agents include, but are not limited to, starch (e.g., corn-starch and starch paste); gelatin; sugars (e.g., sucrose, glucose, dextrose, dextrin, molasses, lactose, lactitol, mannitol); natural and synthetic gums (e.g., acacia, sodium alginate, extract of Irish moss, panwar gum, ghatti gum, mucilage of isapol husks, carboxymethylcellulose, methylcellulose, ethylcellulose, hydroxyethylcellulose, hydroxypropyl cellulose, hydroxypropyl methylcellulose, microcrystalline cellulose, cellulose acetate, polyvinylpyrrolidone), magnesium aluminium silicate (Veegum), and larch arabogalactan); alginates; polyethylene oxide; polyethylene glycol; inorganic calcium salts; silicic acid; polymethacrylates; waxes; water; alcohol; and combinations
- Exemplary preservatives may include antioxidants, chelating agents, antimicrobial
- antioxidants include, but are not limited to, alpha tocopherol, ascorbic acid, acorbyl palmitate, butylated hydroxyanisole, butylated hydroxytoluene, monothioglycerol, potassium metabisulfite, propionic acid, propyl gallate, sodium ascorbate, sodium bisulfite, sodium metabisulfite, and sodium sulfite.
- chelating agents include
- ethylenediaminetetraacetic acid citric acid monohydrate, disodium edetate, dipotassium edetate, edetic acid, fumaric acid, malic acid, phosphoric acid, sodium edetate, tartaric acid, and trisodium edetate.
- EDTA ethylenediaminetetraacetic acid
- Exemplary buffering agents include, but are not limited to, citrate buffer solutions, acetate buffer solutions, phosphate buffer solutions, ammonium chloride, calcium carbonate, calcium chloride, calcium citrate, calcium glubionate, calcium gluceptate, calcium gluconate, D-gluconic acid, calcium glycerophosphate, calcium lactate, propanoic acid, calcium levulinate, pentanoic acid, dibasic calcium phosphate, phosphoric acid, tribasic calcium phosphate, calcium hydroxide phosphate, potassium acetate, potassium chloride, potassium gluconate, potassium mixtures, dibasic potassium phosphate, monobasic potassium phosphate, potassium phosphate mixtures, sodium acetate, sodium bicarbonate, sodium chloride, sodium citrate, sodium lactate, dibasic sodium phosphate, monobasic sodium phosphate, sodium phosphate mixtures, tromethamine, magnesium hydroxide, aluminium hydroxide, alginic acid, pyrogen-free water, isot
- Exemplary lubricating agents include, but are not limited to, magnesium stearate, calcium stearate, stearic acid, silica, talc, malt, glyceryl behanate, hydrogenated vegetable oils, polyethylene glycol, sodium benzoate, sodium acetate, sodium chloride, leucine, magnesium lauryl sulfate, sodium lauryl sulfate, and combinations thereof.
- the present invention provides the peptide of the first aspect of the invention, or the construct of the second aspect of the invention, or of the combination of the third aspect of the invention for use as a medicament.
- each one of the components can be performed sequentially, separately or
- the immunosuppressive role can be treated with the peptide of the invention.
- the peptides and constructs of the invention can be used to enhance antiviral or antitumor vaccines, since their administration after the vaccination, and the subsequent blocking of Treg lymphocytes by the peptides of the invention during their administration, would allow enhancing the response to the components of the vaccine. It additionally seems that Treg lymphocytes can play a central role in the oral tolerance to an antigen (Huibregtse, I. L. et al., "Induction of ovalbumin-specific tolerance by oral administration of Lactococcus lactis secreting ovalbumin", Gastroenterology, 2007, vol. 133, pages 517-528), therefore the peptides of the invention could be used in situations in which this tolerance to orally administered antigens is to be broken.
- neoplastic diseases includes both tumors (i.e., tissue disorders which cause an increase in volume, particularly, lumps due to an increase in the number of cells forming it, independently of whether they are benign or malignant), and cancer (a disease which is characterized by an uncontrolled proliferation of abnormal cells capable of invading adjacent tissues and disseminating to distant organs).
- infectious diseases generally relates to diseases caused by infectious agents e.g., viruses, bacteria, fungi, parasites, etc.
- Treg lymphocytes exert a negative effect, since they are capable of inhibiting the activation of immune responses against infectious or neoplastic processes which would favour the cure.
- FIG.s 1 and 2 the peptides of the invention show antitumor activity against liver cancer cells and in FIG. 3 it is shown that the peptides of the invention are effective in preventing colon cancer cell's growth.
- the peptide of the invention, the construct of the second aspect of the invention, the combination of the third aspect of the invention and/or the pharmaceutical or veterinary composition of the fourth aspect of the invention is used in the treatment of colon cancer or liver cancer.
- viral infections which can be treated with the peptides and constructs of the invention include virtually any infection of viral origin, for example, infections caused by hepatitis B virus, hepatitis C virus, HIV, human papillomavirus, herpes viruses, for example, human herpesviruses such as herpes simplex virus type 1 (HSV-1), herpes simplex virus type 2 (HSV-2), varicella zoster virus (VZV), cytomegalovirus (CMV), human herpesvirus 6 (HHV-6), human herpesvirus 7 (HHV-7), Epstein-Barr virus (EBV), Kaposi's herpesvirus (HHV-8), etc.
- HSV-1 herpes simplex virus type 1
- HSV-2 herpes simplex virus type 2
- VZV varicella zoster virus
- CMV cytomegalovirus
- HHV-6 human herpesvirus 6
- HHV-7 human herpesvirus 7
- EBV Epstein-Barr
- Illustrative non-limiting examples of bacterial infections which can be treated with the peptides and constructs of the invention include, although they are not limited to, infections caused by Mycobacterium leprae, infections caused by Mycobacterium tuberculosis, infections caused by Yersinia pestis, gastric infection caused by Helicobacter pylori, etc.
- fungal infections which can be treated with the peptides and constructs of the invention include, although they are not limited to, infections caused by Candida albicans, infections caused by Trichophyton rubrum, infections caused by Aspergillus sp., etc.
- Illustrative non-limiting examples of parasitic infections which can be treated with the peptides and constructs of the invention include, although they are not limited to, leishmaniasis, e.g., visceral leishmaniasis, infections such as malaria caused by Plasmodium parasites, toxoplasmosis, etc.
- neoplastic diseases which can be treated with the peptides and constructs of the invention include, although they are not limited to, papillomas, adenomas, lipomas, osteomas, myomas, angiomas, nevi, mature teratomas, carcinomas, sarcomas or immature teratomas, for example, melanoma, myeloma, leukemia, Hodgkin's lymphoma, basalioma, spinalioma, breast cancer, ovarian cancer, uterine cancer, lung cancer, bronchial cancer, prostate cancer, colon cancer, pancreatic cancer, kidney cancer, esophageal cancer, hepatocarcinoma, head and neck cancer, etc.
- the peptide of the invention and the construct of the second aspect of the invention can be obtained by means of recombinant DNA technology. Therefore, in another aspect, the invention provides a DNA sequence encoding a peptide or a construct of the invention. Said DNA sequence can be easily deduced from the amino acid sequence of the peptide or of the construct of the invention. Said DNA sequence can be contained in a DNA construct. Therefore, in another aspect, the invention provides a DNA construct comprising a DNA sequence encoding a peptide or construct of the invention. Said DNA construct can contain, operatively bound, a sequence regulating the expression of the DNA sequence encoding the peptide or construct of the invention.
- Control sequences are sequences controlling and regulating the transcription and, where appropriate, the translation of the peptide or construct of the invention, and include promoter, terminator sequences etc., functional in transformed host cells comprising said DNA sequence or construct.
- said expression control sequence is functional in bacteria.
- Said DNA construct advantageously further comprises a marker or gene encoding a motif or a phenotype which allows selecting the transformed host cell with said DNA construct.
- the DNA construct provided by this invention can be obtained by means of using techniques that are widely known in the state of the art (Sambrook et al., "Molecular cloning, a Laboratory Manual", 4th ed., Cold Spring Harbor Laboratory Press, N.Y., 2012 Vol 1-3 ) Chapter 3 from Vol 1 : Cloning and Transformation with Plasmid Vectors).
- the DNA sequence or the DNA construct provided by this invention can be inserted in a suitable vector. Therefore, in another aspect, the invention relates to a vector, such as an expression vector, comprising said DNA sequence or construct. The choice of the vector will depend on the host cell in which it will be subsequently introduced.
- the vector wherein said DNA sequence is introduced can be a plasmid or a vector which, when it is introduced in a host cell, is or is not integrated in the genome of said cell.
- Said vector can be obtained by conventional methods known by persons skilled in the art (Sambrook et al., 2012, mentioned above).
- the invention relates to a host cell, such as a transformed host cell, comprising a DNA sequence or a DNA construct provided by this invention or a vector as has been previously mentioned.
- Said cell can be a prokaryotic or eukaryotic cell.
- the invention relates to a process for producing a peptide of the invention or a construct of the invention comprising growing a host cell comprising the sequence, DNA construct or vector provided by this invention under conditions allowing the production of said peptide or construct of the invention and, if desired, recovering said peptide or construct of the invention.
- the conditions for optimizing the culture of said host cell will depend on the host cell used.
- the process for producing the peptide or the construct of the invention further includes the isolation and purification of said peptide or construct.
- said DNA sequences and DNA constructs provided by this invention can be used in the preparation of vectors and cells for treating a pathology in which it is suitable or necessary to transiently regulate or block the immunosuppressive activity of Treg lymphocytes. Therefore, in another aspect, the invention relates to the use of said DNA sequences and DNA constructs in the preparation of vectors and cells for the treatment of a pathology in which it is suitable or necessary to transiently regulate or block the immunosuppressive activity of Treg lymphocytes, for example, viral, bacterial, fungal, parasitic infections, etc., and neoplastic diseases.
- said DNA sequence or construct can be put in contact with a gene transfer vector, such as a viral or non-viral vector.
- a gene transfer vector such as a viral or non-viral vector.
- Suitable viral vectors for putting this embodiment of the invention into practice include, but are not limited to, adenoviral vectors, adeno-associated vectors, retroviral vectors, lentiviral vectors, alphaviral vectors, herspesviral vectors, coronavirus-derived vectors, etc.
- Suitable non-viral type vectors for putting this embodiment of the invention into practice include, but are not limited to naked DNA, liposomes, polyamines, dendrimers, cationic glycopolymers, liposome-polycation complexes, proteins, receptor-mediated gene transfer systems, etc.
- Solvent A water with 0.075% TFA;
- Solvent B acetonitrile. Different columns and gradients at room temperature depending on the methods (table below).
- HPLC-analysis was performed using a Shimadzu LC-20AB or LC-20AD or Agilent 1100 Series HPLC and UV detection (210 / 220 / 254 nm).
- Solvent A water with 0.1% TFA
- Solvent B acetonitrile with 0.1 % TFA. Different columns and gradients depending on the methods (table below).
- microwaves ; calc: calculated; rt: room temperature; Rt: Retention time; min: minute; Prep: Preparative; eq: equivalent; rpm: revolutions per minute; UV: ultraviolet; PG: protective group; TFA: trifluoroacetic acid; CTC: chlorotrityl chloride; Boc: terf-butoxycarbonyl; DCM:
- HATU 1-[Bis(dimethylamino)methylene]-1 H-1 ,2,3-triazolo[4,5-0]pyridinium 3-oxid hexafluorophosphate
- HBTU N,N,N',N'-Tetramethyl-0-(1 H-benzotriazol-1-yl)uronium hexafluorophosphate
- EDT ethanedithiol
- TIS thioanisole
- HOBt Hydroxybenzotriazole DIC: ⁇ , ⁇ '-Diisopropylcarbodiimide
- THF tetrahydrofuran
- DEAD diethyl azodicarboxylate
- Pbf 2,2,4,6, 7-pentamethyldihydrobenzofurane
- PPh3 triphenylphosphine
- EtOAc or EA ethyl acetate
- Ns nitrobenzenesulfonyl
- Ns nitrobenzen
- the reaction was monitored by ninhydrin color reaction or Tetrachloro-p-benzoquinone test.
- the peptide resin was washed with DMF X 3, MeOH X 3, and then dried under N2 bubbling overnight. After that the peptide resin was treated with 2.5%EDT/2.5%H 2 0/95%TFA for 3 h for 2 times.
- the peptide solution was precipitated with cold tert-butyl methyl ether (8 mL) and centrifuged (2 min at 3000 rpm). The supernatant was decanted and the precipitate was washed twice with tert-butyl methyl ether (100 imL).
- Preparative HPLC purification method means that no particular HPLC purification method was performed.
- the peptide was synthesized by solid phase synthesis using Fmoc-Met-CTC Resin (0.3 mmol, 0.5 mmol/g).
- the other amino acids were coupled with HBTU (0.324 g, 2.85 eq) and DIEA (0.32 mL, 6.0 eq) for 1 hour. 20% piperidine in DMF was used for deblocking.
- the coupling reaction was monitored by ninhydrin color reaction. After washing with MeOH (3 x), the resin was dried under vacuum for 2 hours.
- the resin was treated with 1 %TFA/DCM (10 mL) for 5 min and filtered, the TFA-mixture was adjusted to pH of 7 with DIEA, the TFA- mixture was added into 300 mL DCM, it was treated with DIC (2.0 eq) and HOBt (2.0 eq) for 16 hours. Evaporated to give the crude protecting peptide, the peptide was treated with 95%TFA/2.5%TIS/2.5%H20 (100 mL) for 2 hours. The TFA mixture was precipitated with cold methyl tert-butyl ether (100 mL) and centrifuged (5000 rpm, 2 min). The supernatant was decanted and the precipitate was washed one more time (50 mL).
- the resin was treated with 1 %TFA/DCM (10 mL) for 5 min, evaporated to give the crude peptide and lyophilized to give the crude product, the crude was added into 100 mL DCM, adjust pH>7 by DIEA, and then HATU (1 .5 eq) was added. Evaporated to give the crude cyclized peptide.
- the crude cyclized peptide was treated with 90%TFA/5%EDT/2.5%Tis/2.5%H 2 O for 2 hours.
- the TFA mixture was precipitated with cold methyl tert-butyl ether (100 mL) and centrifuged (5000 rpm, 2 min). The supernatant was decanted and the precipitate was washed one more time (50 mL).
- the coupling reaction was monitored by ninhydrin color reaction. After washing with MeOH, the resin was dried under vacuum for 2 hours. The resin was treated with 1 %TFA/DCM (10 mL) for 5 min, evaporated to give the crude peptide and lyophilized to give the crude product, the crude was added into 100 mL DCM, adjust pH>7 by DIEA, and then HATU (1.5 eq) added. Evaporated to give the crude peptide. The crude was treated with 90%TFA/5%EDT/2.5%Tis/2.5%H 2 O for 2 hours. The TFA mixture was precipitated with cold methyl tert-butyl ether (100 mL) and centrifuged (5000 rpm, 2 min).
- the Fmoc protecting peptide resin (9, methyl N 2 -(((9H-fluoren-9-yl)methoxy)carbonyl)-N w -((2,2,4,6,7-pentamethyl- 2,3-dihydrobenzofuran-5-yl)sulfonyl)-L-argininate) CTC resin), was treated with 20% piperidine in DMF for 30 min. After deblocking, the resin was washed with DMF (20 mL) for 5 times.
- the resin was treated with NsCI (2.0 eq) and DIEA (4.0 eq) in THF (50 mL) for 1 hour, then washed with DMF (5 x), the resin was treated with terf-butyl (2-(2-hydroxyethoxy)ethyl)carbamate (2.0 eq) and ⁇ 3 ⁇ 4 (2.0 eq), DEAD (2.0 eq) was added dropwise in THF (100 mL), the resin was bubbling for 1 hour, the resin was washed with DMF (5 x), the resin was treated with sodium benzenethiolate (2.0 eq) in DMF (100 mL) for 1 hour, the resin was washed with DMF (5 x), the resin was treated with Fmoc-CI (2.0 eq) and DIEA (4.0 eq) in DMF (50 mL) for 30 min.
- the coupling reaction was monitored by ninhydrin color reaction.
- the resin was washed with DMF (3 x) and MeOH (3 x), dried under vacuum for 2 hours. Then the resin was treated with 1 % TFA/DCM (50 mL) for 5 min, evaporated to give the crude.
- Plasmid pET20b FOXP3-His was generated to produce the human FOXP3 tagged with 6 histidines at the C terminus of the protein. Briefly, plasmid pDEST15-FOXP3 (provided by Dr. Casal, Madrid, Spain) was used as template to amplify FOXP3 by PCR using the primers Upper FOXP3 Ndel catatgcccaaccccaggc (SEQ ID NO: 55) and Lower FOXP3
- pET45b His-Runx1 was obtained by PCR of activated human CD4 T cells obtained from healthy volunteers (after the signature of an informed consent) using the primers Upper Runxl atgcgtatccccgtagatg (SEQ ID NO: 57) and Lower Runxl
- gtagggcctccacacggcctc SEQ ID NO: 58
- the fragment was cloned in pcDNA3.1.
- pET45b and pcDNA3.1 -Runxl were digested with BamHI and NotI and ligated to obtain pET45b-Runx1.
- Plasmids were used to transform BL21 cells (DE3; Novagen, Schwalbach, Germany) for the expression of the recombinant protein.
- the transformed BL21 cells were grown in LB medium at 37°C (1 liter of final culture medium) (with ampicilin 0,1 mg/ml). Once the OD of the culture was between 0.5 and 1.0 , IPTG (0.4 mM, final concentration) was added.
- Plasmid pDEST15-FOXP3 encoding the fusion protein GST-FOXP3 (GST fused to the isoform A from human FOXP3 gene), was transformed into BL21 cells for the expression of the recombinant protein.
- GST-FOXP3 protein was purified from the soluble fraction of cell extracts obtained,as described above, by affinity chromatography (GSTrap; Amersham, Piscataway, NJ) using a fast protein liquid chromatography platform (AKTA; Amersham) following manufacturer ' s instructions.
- the eluted proteins were desalted using Hitrap desalting columns (Pharmacia) and analyzed by SDS-PAGE using Coomassie blue (Bio-Safe Coomassie reagent; Bio-Rad, Hercules, CA) and by Western blot. 2. Biomolecular interaction analysis by surface plasmon resonance and by Alphascreen technology
- AlphaScreenTM is a bead- based technology that is designed to measure the proximity of donor and acceptor beads conjugated to biomolecules of interest.
- recombinant Foxp3 was expressed with a Histine tag as disclosed in section (1) above, and captured by Nickel chelate Acceptor beads (Cat. AL108 Perkin Elmer) following manufacturer's instructions.
- the other version of recombinant FOXP3, expressing a GST tag was captured by Glutathione Donor beads (Perkin Elmer Cat. 6765300), following manufacturer's instructions. When the two proteins interacted together, the Donor and Acceptor beads come into proximity. Excitation of the Donor beads results in emission of light from the Acceptor beads. The signal generated was proportional to the amount of proteins.
- reaction buffer contained 20 mM HEPES, pH 7.9, 200 mM KCI, 1 mM MgCI2 and 0.05% BSA.
- Foxp3-Runx1 interactions were used.
- Foxp3-GST and NFAT-6His proteins were used.
- Recombinant Runxl expressed in E. Coli with a hexa-histidine tag was captured by nickel chelate acceptor beads following manufacturer's instructions, whereas the recombinant FOXP3 expressed with a GST tag was captured by glutathione donor beads (Perkin Elmer) following manufacturer's instructions. His-tagged Runxl (46 nM final concentration) was incubated with 100 nM GST-FOXP3 and the peptides to be tested (added at different concentrations from 1 to 100 ⁇ ) for 1 h at room temperature.
- nickel chelate-coated acceptor beads and glutathione donor beads were added to a final concentration of 20 g/ml of each bead. Proteins and beads were incubated for 1 h at room temperature to allow association to occur.
- GST-tagged FOXP3 (40 nM) and His-tagged FOXP3 (400 nM) were co-cultured in the presence or absence of indicated peptides (20 ⁇ ) for 1 h. Then, donor and acceptor beads were added as described above and incubated for 2h.
- Spleen was harvested from BALB/c mice (Harlan Laboratories) and homogenized with a 1-ml syringe through a 100- ⁇ cell strainer into a 50-ml conical tube and rinsed two times with PBS (Calcium free) to recover all cells.
- Cell homogenate was centrifuged at 300 ⁇ g for 10 min and resuspended homogenate in 1 ml ACK Lysis buffer solution per spleen. Gently swirled for 2 min and then the reaction was quenched by adding 12 ml of PBS.
- CD25- and CD25+ cells were centrifuged at 300 ⁇ g for 10 min and purification of CD25- and CD25+ cells was carried out using magnetic beads (Miltenyi, CD25 microbead kit MOUSE, Ref 130-091-072)), following manufacturer ' s instructions. After labelling the cells, they were purified using
- Purified cells were washed, resuspended in culture medium and diluted in T-cell culture medium (RPM1 1640, supplemented with 10% Fetal bovine serum and antibiotics) at a concentration of 2 ⁇ 10 5 /ml (for Tregs) and 2 ⁇ 10 6 /ml (for Tconv), for the assay (See below)
- Treg regulatory T-cell
- the first in vitro assays to measure regulatory T-cell (Treg) function were described by two groups over a decade ago. The observation that a CD25+ T-cell population possessed regulatory activity enabled isolation of natural Tregs cells from mice and humans. With this knowledge, it was shown that CD4+CD25+ T cells could potently suppress the proliferation of activated CD4+CD25- and CD8+ T cells when the populations were cocultured in vitro.
- the following protocol describes a basic type of in vitro Treg suppression assay where Treg function is measured in the absence of antigen-presenting cells (APCs). In this protocol, activation is mediated by anti-CD3 antibodies and includes only two cell types, the target Tconv and Tregs.
- the experiment is setup in a 96-well round-bottom plate in a total volume of 200 ⁇ . All reagents are prepared at four times their desired final concentration and added to assay in 50 ⁇ such that the total volume is 200 ⁇ , thus obtaining the desired final concentration of reactives.
- Purified Tregs and Tconv prepared as described above were diluted and adjusted in T-cell culture medium to 2 ⁇ 10 5 /ml and 2 ⁇ 10 6 /ml, respectively.
- Tregs and Tconv were added in 50 ⁇ of culture media each (RPM1 1640, supplemented with 10% Fetal bovine serum, and antibiotics).
- Anti-CD3 antibody was added in 50 ⁇ (final concentration will be 2.5 ⁇ / ⁇ ) as a stimulus to induce T cell proliferation. 50 ⁇ of each one of the peptides to be tested were added in the corresponding wells at a concentration of 100 ⁇ and those which provided the best results were tested again at lower concentrations to determine the IC50 value.. The final volume was 200 ⁇ in all wells. Tconv alone, Tconv plus anti-CD3, Tconv+anti-CD3+Treg or Tconv+anti-CD3+Treg + peptides were tested by quadruplicate.
- Tconv plus anti-CD3 with no Treg was used to determine maximum proliferation of Tconv whereas Tconv+anti-CD3+Treg was used to determine Treg inhibition.
- Plates were incubated at 37°C, 5% C0 2 for 72 h and then pulsed with 0.1 ⁇ [ 3 H]-thymidine (in 25 ⁇ of culture medium per well). After 8 h of incubation, cell cultures were harvested with a cell harvester (Perkin Elmer) and using unifilter plates. Plates were then dried at 50°C, and scintillation reagent (25 l)(Microscint, Perkin Elmer) was added to each well.
- Counts per minute were determined with a direct beta counter (TopCount, Perkin Elmer).
- the results of in vitro Treg suppression assays are most commonly reported as cpm when [ 3 H]- thymidine is incorporated into proliferating cells.
- Wells containing both Tconv and Tregs will have lower cpm than wells containing Tconv cells alone because coculture of Tregs with Tconv cells reduces the proliferative capacity of Tconv cells.
- the cpm values will increase proportionately. As Tregs proliferate very poorly in vitro, they do not contribute significantly to cpm values.
- a percent suppression (% supp) calculation assay can be calculated in order to depict many experiments with slightly (or significantly) different cpm values. Percent suppression is calculated using the following formula: ((cpm of Tconv cells alone - cpm of Tconv cells treated with Treg)/cpm of Tconv cells alone)*100. Alternatively, a representative experiment can be depicted with cpm. It is expected that if a peptide is able to inhibit Treg activity, a restoration on Tcell proliferation of Tconv in response to anti-CD3 stimulation should be expected.
- Hepa-129 cells (10 6 cells/mouse), were injected
- mice immunized with 50 nanomol/mice of peptide AH1 emulsified in incomplete Freund adjuvant (IFA) were treated intraperitoneally with 10 nanomol/mice of the indicated Treg inhibitory peptide SEQ ID NO: 51 of the invention or with saline daily during 10 days.
- IFA incomplete Freund adjuvant
- mice were injected s.c. with 10 6 CT26 tumor cells. Tumor size was monitored twice a week with a calliper and it was expressed according to the formula V (length x width2)/2. Mice were sacrificed when tumor size reached a volume greater than 4 cm 3 .
- the peptide of the invention shows a remarkably effect in preventing the growth of colon cancer cells.
- the peptide of the invention prevents the growth of tumor, p60 was not efficient, giving rise to a tumor volume of about 2000 mm 3 .
- the NADPH regenerating system contains ⁇ -Nicotinamide adenine dinudeotide phosphate (Sigma, Cat.# N0505), Isocitric acid (Sigma, Cat.#l1252) and Isocitric dehydrogenase (Sigma, Cat.#l2002) at a final concentration of 1 unit/mL at incubation.
- Human liver microsomes were obtained from BD Gentest (Cat.#452117) and mouse liver microsomes from Xenotech (Cat.#M1000), to a final concentration of 0.7 mg protein/mL.
- a volume of 10 ⁇ L of peptide solution and 80 L of microsome solution were added to a 96-well plate and incubated for 10 min at 37°C.
- the reaction was started by the addition of 10 L of NADPH regenerating system and stopped by the addition of 300 L of stop solution (ACN at 4°C, including 100 ng/mL Tolbutamide and 100 ng/mL of Labetalol as internal standard) at different incubation times (0, 5, 10, 20, 30 and 60 min).
- test compound Concentrations of test compound were quantified by LC-MS/MS methodologies (Shimadzu LC 20-AD / API4000) using peak area ratio of analyte/internal standard and the percent loss of parent compound was calculated under each time point to determine the half-life.
- Tables 11 and 12 show the estimated half-life ⁇ n, min) and percentage (%) of peptide remaining after 20 and 60 min of incubation with human liver microsomes (HLM) and mouse liver microsomes (MLM).
- HLM human liver microsomes
- MLM mouse liver microsomes
- Cyclic peptides of the invention have a remarkably increased stability compared to p60.
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US6414129B1 (en) | 1998-08-11 | 2002-07-02 | Darwin Discovery Ltd. | Identification of the gene causing the mouse scurfy phenotype and its human ortholog |
US20090136585A1 (en) | 2007-08-03 | 2009-05-28 | Vinod Labhasetwar | Surface-modified nanoparticles for intracellular delivery of therapeutic agents and composition for making same |
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Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6414129B1 (en) | 1998-08-11 | 2002-07-02 | Darwin Discovery Ltd. | Identification of the gene causing the mouse scurfy phenotype and its human ortholog |
US20090136585A1 (en) | 2007-08-03 | 2009-05-28 | Vinod Labhasetwar | Surface-modified nanoparticles for intracellular delivery of therapeutic agents and composition for making same |
EP2223998A1 (en) * | 2007-11-19 | 2010-09-01 | Proyecto de Biomedicina Cima, S.L. | Peptides that can bind to scurfin and uses thereof |
Non-Patent Citations (23)
Title |
---|
ADESSI C ET AL: "CONVERTING A PEPTIDE INTO A DRUG: STRATEGIES TO IMPROVE STABILITY AND BIOAVAILABILITY", CURRENT MEDICINAL CHEMISTRY : THE NEW INTERNATIONAL JOURNAL FOR TIMELY IN-DEPTH REVIEWS IN MEDICINAL CHEMISTRY, BENTHAM, NL, vol. 9, 1 May 2002 (2002-05-01), pages 963 - 978, XP009061547, ISSN: 0929-8673, DOI: 10.2174/0929867024606731 * |
ALTSCHUL ET AL.: "Basic local alignment search tool", J. MOL. BIOL, vol. 215, 1990, pages 403 - 410, XP002949123, DOI: doi:10.1006/jmbi.1990.9999 |
CASARES N. ET AL.: "A peptide inhibitor of FOXP3 impairs regulatory T cell activity and improves vaccine efficacy in mice", J. IMMUNOL., vol. 185, no. 9, 2010, pages 5150 - 5159, XP055075433, DOI: doi:10.4049/jimmunol.1001114 |
COPOLOVICI D. M. ET AL.: "Cell-Penetrating Peptides: Design, Synthesis, and Applications", ACS NANO, vol. 8, no. 3, 2014, pages 1972 - 1994, XP055341873, DOI: doi:10.1021/nn4057269 |
COPOLOVICI D. M. ET AL.: "Cell-Penetrating Peptides: Design, Synthesis, and Applications", vol. 8, 2014, ACS NANO, pages: 1972 - 1994 |
FORD K.G. ET AL., GENE THERAPY, vol. 8, 2001, pages 1 - 4 |
FORD K.G. ET AL.: "Protein transduction: an alternative to genetic intervention?", GENE THERAPY, vol. 8, 2001, pages 1 - 4, XP001117818, DOI: doi:10.1038/sj.gt.3301383 |
FRASSANITO M.A. ET AL.: "Myeloma cells act as tolerogenic antigen-presenting cells and induce regulatory T cells in vitro", EUR J HAEMATOL., vol. 95, no. 1, 2015, pages 65 - 74 |
HIGGINS ET AL.: "CLUSTAL V: improved software for multiple sequence alignment", CABIOS, vol. 8, no. 2, 1992, pages 189 - 191, XP008137000 |
HUIBREGTSE, I. L. ET AL.: "Induction of ovalbumin-specific tolerance by oral administration of Lactococcus lactis secreting ovalbumin", GASTROENTEROLOGY, vol. 133, 2007, pages 517 - 528, XP022198878, DOI: doi:10.1053/j.gastro.2007.04.073 |
JOOSTEN S. A. ET AL.: "Human CD4 and CD8 regulatory T cells in infectious diseases and vaccination", HUM. IMMUNOL., vol. 69, no. 11, 2008, pages 760 - 770, XP025676551, DOI: doi:10.1016/j.humimm.2008.07.017 |
KHALIL D. N. ET AL.: "The New Era of Cancer Immunotherapy: Manipulating T-Cell Activity to Overcome Malignancy", ADVANCES IN CANCER RESEARCH, vol. 128, 2015, pages 1 - 68, XP009190991, DOI: doi:10.1016/bs.acr.2015.04.010 |
KHALIL DN ET AL.: "The New Era of Cancer Immunotherapy: Manipulating T-Cell Activity to Overcome Malignancy", ADVANCES IN CANCER RESEARCH, vol. 128, 2015, pages 1 - 68, XP009190991, DOI: doi:10.1016/bs.acr.2015.04.010 |
LOZANO ET AL., FRONT ONCOL., vol. 3, 2013, pages 294 |
LOZANO T. ET AL.: "Searching for the Achilles Heel of FOXP3", FRONT. ONCOL., vol. 3, 2013, pages 294, XP055341868, DOI: doi:10.3389/fonc.2013.00294 |
NISHIKAWA H. ET AL.: "Regulatory T cells in tumor immunity", INT. J. CANCER, vol. 127, 2010, pages 759 - 767 |
ONO M. ET AL.: "Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1", NATURE, vol. 446, no. 7136, 2007, pages 685 - 689 |
ONO M. ET AL.: "Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1", NATURE, vol. 446, no. 7136, pages 685 - 689 |
SAMBROOK ET AL.: "Molecular cloning, a Laboratory Manual", vol. 1-3, 2012, COLD SPRING HARBOR LABORATORY PRESS |
SON X. ET AL.: "Structural and biological features of FOXP3 dimerization relevant to regulatory T cell function", CELL REP., vol. 1, no. 6, 2012, pages 665 - 675 |
SON X. ET AL.: "Structural and biological features of FOXP3 dimerization relevant to regulatory T cell function", CELL REP., vol. 1, no. 6, pages 665 - 675 |
TANDRUP SCHMIDT S. ET AL.: "Liposome-Based Adjuvants for Subunit Vaccines: Formulation Strategies for Subunit Antigens and Immunostimulators", PHARMACEUTICS, vol. 8, no. 1, 10 March 2016 (2016-03-10) |
WILLIAMS L. M.; RUDENSKY A. Y.: "Maintenance of the Foxp3-dependent developmental program in mature regulatory T cells requires continued expression of Foxp3", NAT. IMMUNOL., vol. 8, 2007, pages 277 - 284 |
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