WO2016183682A1 - Generating induced neural progenitor cells from blood - Google Patents
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Definitions
- the disclosure relates to reprogramming of blood cells.
- the disclosure relates to methods of generating induced neural progenitor cells derived from CD34 + /CD45 + blood cells.
- resulting iPSCs acquire inefficiencies in lineage specific differentiation from pluripotent state that limits reproducible production of specific mature cell types (Lee et al. , 2014).
- use of hiPSCs in cell replacement therapy continues to precipitate barriers and concerns that require laborious measures to assure resulting cells are free from tumor forming pluripotent cells has yet to be resolved (Cunningham et al., 2012).
- blood cells can be readily obtained from patients, require no culture derivation prior to reprogramming, and have been stored and banked (Broxmeyer, 2010) from large cohort patient trials in the past such as those suffering from neurological disorders (http://brainbank.ucla.edu; http://www.clsa-elcv.ca/).
- the present inventors have shown that OCT4 induced plasticity reprogramming combined with neural potentiating small molecules directly converts human blood progenitors derived from both cord blood and adult sources to neural progenitor cells (NPCs).
- NPCs neural progenitor cells
- the present inventors further demonstrate that these human Blood derived (BD) NPCs are capable of in vivo differentiation and survival as well as tri-potent neural differentiation in vitro that includes neuronal differentiation towards clinically relevant CNS and PNS subtypes.
- the present disclosure provides a method of generating induced neural progenitor cells from CD34 + /CD45 + blood cells comprising:
- the cells in (a) are cultured in hematopoietic stem cell culture media followed by reprogramming media to allow expression of the POU domain containing gene or protein.
- the method further comprises after (b) maintaining the cells produced in (b) in neural induction media for growing or expanding the induced neural progenitor cells.
- CD34 + /CD45 + blood cells that ectopically express a POU domain containing gene or protein in (a) are produced by lentiviral transduction.
- the lentiviral transduction occurs in hematopoietic stem cell culture media and then the cells are transferred to reprogramming media and cultured prior to step (b).
- the CD34 + /CD45 + blood cells that are treated with a POU domain containing gene or protein in (a) are produced by providing an exogenous POU domain containing gene or protein.
- the POU domain containing gene or protein is an Oct gene or protein, such as Oct-1 , -2, -4 or -1 1 .
- the Oct gene or protein is Oct-4.
- the CD34 + /CD45 + blood cells are derived from peripheral blood. In another embodiment, the CD34 + /CD45 + blood cells are derived from umbilical cord blood.
- the cells in (a) are optionally cultured in the hematopoietic stem cell culture media for 2-4 days.
- the hematopoietic stem cell culture media comprises SCF, Flt-3L, IL-3 and/or TPO.
- the hematopoietic stem cell culture media comprises SCF, Flt- 3L, IL-3 and TPO.
- the cells in (b) are optionally cultured in reprogramming media for 4-7 days.
- the reprogramming media comprises bFGF.
- the reprogramming media comprises DMEM/F12, 20% Knockout Serum Replacement and bFGF.
- the inhibitors of Smad are compounds that inhibit Smad signaling.
- the Smad inhibitors comprise at least one of SB431542, LDN-193189, and Noggin.
- the inhibitors of GSK-3 are compounds that inhibit GSK-3 signaling.
- the GSK-3 inhibitor is CHIR99021 .
- the inhibitors of Smad and GSK- 3 ⁇ of (c) comprise SB431542, LDN-193189, Noggin and CHIR99021 .
- the cells in (c) are optionally cultured in the basal neural progenitor media supplemented with the inhibitors of Smad and GSK-3 for 10-14 days.
- the neural induction media comprises basal neural progenitor media supplemented with bFGF and EGF.
- the methods disclosed herein further comprise culturing the cells produced in (d) in differentiation medium under conditions that allow production of differentiated cells.
- the differentiated cells are neurons, optionally sensory neurons.
- the differentiated cells are glial cells, optionally astrocytes or oligodendrocytes.
- isolated progenitor or differentiated cells generated by the methods disclosed herein.
- the subject is a human.
- Also provided herein is a method of screening progenitor cells or cells derived therefrom comprising
- Figure 1 shows generation of iNPC from neonatal and adult blood cells.
- A Schematic for deriving iNPCs from lineage depleted CD34 + CD45 + blood.
- Figure 2 shows molecular profiling of OCT4 BD-iNPC generation.
- A Hierarchal cluster analysis on global gene expression of Fib- iNPC and BD-iNPC +/- inhibitors with primary human NPC.
- B Number of genes changing in response to inhibitors in Fib-iNPC versus hBD-iNPCOCT4 (false discovery rate (FDR) p ⁇ 0.05, fold change > 1 .5).
- FDR false discovery rate
- GSEA Gene set enrichment analysis
- Figure 3 shows in vivo and in vitro differentiation potential of BD- iNPCs.
- A Montage of individual images from sectioned brain tissue 3 weeks after injection of BD-iNPCs expressing GFP ("R" zoomed images have been manually aligned for visual continuity).
- B In vivo differentiation of BD-iNPCs into neurons (expression of Tuj1 , MAP2 and NeuN) and astrocytes (expression of GFAP).
- C-E In vitro differentiation of BD-iNPCs in to GFAP- positive astrocytes (C) and 04-positive oligodendrocytes (D).
- L Gene set enrichment analysis for LEE_NEURAL_CREST_STEM_CELL gene list between human fibroblasts and human blood.
- M Gene set enrichment analysis for LEE_NEURAL_CREST_STEM_CELL gene list between human blood and BD-iNPCs.
- FIG. 4 shows generation of functional nociceptive neurons that model chemotherapy induced neuropathy.
- B Expression of NTRK1 by FACS.
- C Transcript expression of BRN3A, ISL1 and NTRK1 during differentiation from iNPCs toward sensory neurons.
- E Expression of channels, channel subunits and receptors, specific to nociceptors.
- G, H Calcium flux in response to 30 ⁇ ⁇ , ⁇ -methylene ATP treatment of day-14 sensory neurons derived from adult PB-iNPCs.
- I Calcium trace and
- J distribution of cells responsive to 30 ⁇ ⁇ , ⁇ -methylene ATP and 1 ⁇ capsaicin.
- K P2X 3 antagonist A-317491 significantly inhibited the calcium- response to ⁇ , ⁇ -methylene ATP
- L Predicted # of nociceptors from 50K human blood progenitors.
- Figure 5 shows generation of iNPC from neonatal and adult blood cells related to Figure 1 .
- A Preparation of CD34 + CD45 + blood cells from lineage depleted mononuclear cells from adult perpherial blood or umbilical cord blood shown in representative panel.
- B FACS analysis shows CD34 + CD45 + human blood cells are devoid of pluripotent markers (SSEA3, TRA1 -60), early neural markers (Nestin, PAX6) and neural crest (NC) markers (p75, CD57).
- C Upon exogenous expression of Oct4, along with inhibition of SMAD and GSK-3 , human CD34 + CD45 + blood cells acquire neuronal marker, Nestin as shown in representative flow cytometry plot.
- H-J Stable expansion of human blood derived iNPCs over long-term passages in vitro.
- H Flow cytometric analysis showed that BD-iNPCs stably expressed makers associated with adult human neural stem cells, PAX6 and Nestin after from 6 passages up to long-term in vitro expansion up to 30 passages (p30).
- I Quantification of flow analysis represented in H.
- J Comparative analyses of expression of genes associated with neural lineage development over long-term culture from p6 to p30.
- Figure 6 shows genomic integrity of BD-iNPCs and loss of hematopoietic and gain of neural transcriptional programming during BD- iNPC generation related to Figure 2.
- Array Comparative Genomic Hybridization (aCGH) analysis of 2 different clones of NPCs (A and B) in the early passage was compared to late passage number and no statistically significant (minimum genomic markers of 10 to specify genomic region and p- value ⁇ 0.001 ) chromosomal aberrations were found.
- Tissue Expression analysis on DAVID Bioinformatics Resource tool shows enrichment of up- regulated genes within neural programs and down-regulated genes within hematopoietic programs (C).
- Figure 7 shows in vivo and in vitro differentiation potential of BD- iNPCs related to Figures 3 and 4.
- A-H Effects of small molecule inhibitors in the self-renewal and developmental potential of human BD-iNPCs.
- A Quantitative analysis of BD-iNPCs expansion in the presence or absence of inhibitors.
- B Schematic strategy for neuronal differentiation of BD-iNPCs cultured in the presence or absence of small molecule inhibitors.
- C Immunofluorescence analysis with antibodies to neuron marker Tuj1 , and to neural stem cell marker, PAX6.
- D Quantitative analysis of representative images shown in C.
- E Schematic strategy for differentiating BD-iNPCs into neurons after removing inhibitors in the cultures.
- F Immunofluorescence analysis with antibodies to Tuj1 and PAX6, after culturing BD-iNPCs based on schematic strategy shown in E.
- G Intracellular analysis by flow cytometry for PAX6 from BD-iNPCs cultured in the presence or absence of small molecule inhibitors with EGF and bFGF.
- H Frequency of PAX6 positive cells (left) and mean fluorescent intensity (MFI) (right) from flow cytometry analysis shown in G for human BD-iNPCs.
- Figure 8 shows generation of functional nociceptive neurons that model chemotherapy induced neuropathy related to Figure 4.
- A Scheme of protocol used to generate nociceptive sensory neuronal development from human BD-iNPCs.
- B Differentiated nociceptive sensory neuron shows high levels of glutamate, consistent with an excitatory glutamatergic neuron.
- C RT-PCR for sensory neuron marker genes
- D Photomontage of calcium flux images of neurons derived from BD-iNPC calcium response at day 7 (left) and day 14 (right) upon treatment with 30 ⁇ ⁇ , ⁇ -methylene-ATP or 1 ⁇ capsaicin. The calcium ionophore ionomycin was used as a dye loading control.
- the present disclosure provides a method of generating induced neural progenitor cells from CD34 + /CD45 + blood cells comprising:
- induced neural progenitor cells are generated without traversing the pluripotent state.
- the cells in (a) are cultured in hematopoietic stem cell culture media followed by reprogramming media to allow expression of the POU domain containing gene or protein.
- the method further comprises after (b) maintaining the cells produced in (b) in neural induction media for growing or expanding the induced neural progenitor cells.
- POU domain containing gene or protein refers to a gene or protein containing a POU domain that binds to Octamer DNA binding sequences, such as ntgcannn (SEQ I D NO:65, wherein n is a, c, g, or t, for example, the sequence tttgcat (SEQ ID NO:66).
- the POU domain containing gene or protein is an Oct gene or protein, including without limitation, the Oct-1 , -2, -4, or -1 1 .
- the Oct gene or protein is Oct-4.
- progenitor cell refers to a less specialized cell that has the ability to differentiate into a more specialized cell.
- the phrase "without traversing the pluripotent state" as used herein refers to the direct conversion of the CD34 + /CD45 + blood cell to the neural progenitor cell, for example, the produced cells lack pluripotent stem cell properties, such as Tra-1 -60 or SSEA3. In an embodiment, the cells do not form teratomas.
- CD34 + /CD45 + blood cell refers to a hematopoietic progenitor cell that displays the CD34 and CD45 glycoproteins on its cell surface.
- CD34 is a glycosylated transmembrane protein and represents a well-known marker for primitive blood- and bone marrow-derived progenitor cells, especially for hematopoietic and endothelial stem cells.
- CD45 is a protein phosphatase glycoprotein expressed in all nucleated hematopoietic cells.
- the CD34 + /CD45 + blood cells are derived from peripheral blood.
- the CD34 + /CD45 + blood cells are derived from umbilical cord blood.
- CD347CD45 + blood cells are known in the art.
- Mononuclear cells may be isolated by using density gradient centrifugation.
- CD34 + /CD45 + cells were selected by using an immunomagnetic separation system (Miltenyi Biotec).
- the terms "neural progenitor cell” or “induced neural progenitor cell” are used herein interchangeably to refer to a cell that gives rise to cells of the neural lineage, including, without limitation, neurons and glial cells, for example, astrocytes and oligodendrocytes.
- Neural progenitor markers include, without limitation, A2B5, nestin, PAX6, Sox2, CD133, GFAP, beta tubulin III, and tyrosine Hydroxylase. In an optional embodiment, the neural cells are sorted using these markers.
- Oct-4 refers to the gene product of the Oct-4 gene and includes Oct-4 from any species or source and includes analogs and fragments or portions of Oct-4 that retain enhancing activity.
- the Oct-4 protein may have any of the known published sequences for Oct-4 which can be obtained from public sources such as Genbank. An example of such a sequence includes, but is not limited to, NM_002701 .
- OCT-4 also referred to as POU5-F1 or MGC22487 or OCT3 or OCT4 or OTF3 or OTF4.
- Oct-1 refers to the gene product of the Oct-1 gene and includes Oct-1 from any species or source and includes analogs and fragments or portions of Oct-1 that retain enhancing activity.
- the Oct-1 protein may have any of the known published sequences for Oct-1 which can be obtained from public sources such as Genbank. An example of such a sequence includes, but is not limited to, NM_002697.2.
- Oct-1 also referred to as POU2-F1 or OCT1 or OTF1 .
- Oct-2 refers to the gene product of the Oct-2 gene and includes Oct-2 from any species or source and includes analogs and fragments or portions of Oct-2 that retain enhancing activity.
- the Oct-2 protein may have any of the known published sequences for Oct-2 which can be obtained from public sources such as Genbank. An example of such a sequence includes, but is not limited to, NM_002698.2.
- Oct-2 is also referred to as POU2-F2 or OTF2.
- Oct-1 1 refers to the gene product of the Oct-1 1 gene and includes Oct-1 1 from any species or source and includes analogs and fragments or portions of Oct-1 1 that retain enhancing activity.
- the Oct-1 1 protein may have any of the known published sequences for Oct- 1 1 which can be obtained from public sources such as Genbank. An example of such a sequence includes, but is not limited to, NM_014352.2.
- Oct-1 1 is also referred to as POU2F3.
- CD34 + /CD45 + blood cells that express a POU domain containing gene or protein include overexpression of the endogenous POU domain containing gene or ectopic expression of the POU domain containing gene or protein.
- the CD34 + /CD45 + blood cells do not additionally overexpress or ectopically express or are not treated with other transcription factors, such as Sox2.
- CD34 + /CD45 + blood cells that express a POU domain containing protein or gene can be obtained by various methods known in the art, including, without limitation, by overexpressing endogenous POU domain containing gene, or by introducing a POU domain containing protein or gene into the cells to produce transformed, transfected or transduced cells.
- the terms "transformed”, “transfected” or “transduced” are intended to encompass introduction of a nucleic acid (e.g. a vector) into a cell by one of many possible techniques known in the art.
- nucleic acid can be introduced into mammalian cells via conventional techniques such as calcium phosphate or calcium chloride co-precipitation, DEAE-dextran mediated transfection, lipofectamine, electroporation or microinjection or via viral transduction or transfection.
- conventional techniques such as calcium phosphate or calcium chloride co-precipitation, DEAE-dextran mediated transfection, lipofectamine, electroporation or microinjection or via viral transduction or transfection.
- Suitable methods for transforming, transducing and transfecting cells can be found in Sambrook et al. (Molecular Cloning: A Laboratory Manual, 3rd Edition, Cold Spring Harbor Laboratory Press, 2001 ), and other laboratory textbooks.
- Suitable expression vectors for directing expression in mammalian cells generally include a promoter (e.g., derived from viral material such as polyoma, Adenovirus 2, cytomegalovirus and Simian Virus 40), as well as other transcriptional and translational control sequences.
- a promoter e.g., derived from viral material such as polyoma, Adenovirus 2, cytomegalovirus and Simian Virus 40
- mammalian expression vectors include pCDM8 (Seed, B. , Nature 329:840 (1987)) and pMT2PC (Kaufman et al., EMBO J. 6: 187-195 (1987)).
- CD34 + /CD45 + blood cells that express a POU domain containing gene or protein or functional variants or fragments thereof are produced by lentiviral transduction.
- the lentiviral transduction occurs in hematopoietic stem cell culture media and then the cells are transferred to reprogramming media and cultured prior to step (b).
- the CD34 + /CD45 + blood cells that are treated with a POU domain containing gene or protein include addition of exogenous POU domain containing protein or functional variants or fragments thereof or peptide mimetics thereof.
- the CD34 + /CD45 + blood cells that are treated with a POU domain containing gene or protein include addition of a chemical replacer that can be used that induces a POU domain containing gene or protein expression.
- the POU domain containing proteins may also contain or be used to obtain or design "peptide mimetics".
- a peptide mimetic may be made to mimic the function of a POU domain containing protein.
- Peptide mimetics are structures which serve as substitutes for peptides in interactions between molecules (See Morgan et al (1989), Ann. Reports Med. Chem. 24:243-252 for a review).
- Peptide mimetics include synthetic structures which may or may not contain amino acids and/or peptide bonds but retain the structural and functional features.
- Peptide mimetics also include molecules incorporating peptides into larger molecules with other functional elements (e.g., as described in WO 99/25044).
- Peptide mimetics also include peptoids, oligopeptoids (Simon et al (1972) Proc. Natl. Acad, Sci USA 89:9367) and peptide libraries containing peptides of a designed length representing all possible sequences of amino acids corresponding to a POU domain containing peptide.
- Peptide mimetics may be designed based on information obtained by systematic replacement of L-amino acids by D-amino acids, replacement of side chains with groups having different electronic properties, and by systematic replacement of peptide bonds with amide bond replacements. Local conformational constraints can also be introduced to determine conformational requirements for activity of a candidate peptide mimetic.
- the mimetics may include isosteric amide bonds, or D-amino acids to stabilize or promote reverse turn conformations and to help stabilize the molecule. Cyclic amino acid analogues may be used to constrain amino acid residues to particular conformational states.
- the mimetics can also include mimics of the secondary structures of the proteins described herein. These structures can model the 3-dimensional orientation of amino acid residues into the known secondary conformations of proteins. Peptoids may also be used which are oligomers of N-substituted amino acids and can be used as motifs for the generation of chemically diverse libraries of novel molecules.
- variants as used herein includes modifications, substitutions, additions, derivatives, analogs, fragments or chemical equivalents of the POU domain containing proteins that perform substantially the same function in substantially the same way. For instance, the variants of the POU domain containing proteins would have the same function of being useful in binding the Octamer sequences disclosed herein.
- Smad refers to proteins in the signaling pathway downstream of TGF-beta binding to its receptor and inhibitors of Smad refer to compounds that inhibit such signaling.
- GSK-3p or "glycogen synthase kinase-beta 3 (NM_001 146156)" as used herein refers to a proline-directed serine-threonine kinase that was initially identified as a phosphorylating and an inactivating agent of glycogen synthase and inhibitors of GSK-3 refer to compounds that inhibit the kinase activity.
- inhibitor refers to any substance that is capable of inhibiting the Smad signaling pathway and/or GSK-3 kinase activity. Such inhibitors optionally include antisense nucleic acid molecules, proteins, antibodies (and fragments thereof), small molecule inhibitors and other substances.
- the inhibitors of Smad are compounds that inhibit Smad signaling.
- the Smad inhibitors comprise at least one of SB431542 (CAS No: 301836-41 -9) (Table 3), LDN-193189 (CAS No: 1062368-24-4) (Table 3), and Noggin (Genbank Accession: NM_005458).
- the inhibitors of GSK-3 are compounds that inhibit GSK-3 kinase activity.
- the GSK-3 inhibitor is CHIR99021 (CAS No: 252917-06- 9) (Table 3).
- the inhibitors of Smad and GSK-3 used in the methods described herein comprise SB431542, LDN-193189, Noggin and CHIR99021.
- SB431542 is a selective transforming growth factor-beta (TGF- beta) receptor inhibitor, other known inhibitors include, without limitation: A 83-01 , D 4476, GW 788388, LY 364947, R 268712, RepSox, SB 505124, SB 525334 and SD 208.
- LDN-193189 is a bone morphogenic protein (BMP) receptor inhibitor, other known inhibitors include, without limitation: DMH-1 , Dorsomorphin dihydrochloride, K 02288, and ML 347.
- BMP bone morphogenic protein
- CHIR99021 is a GSK-3 inhibitor
- other known inhibitors include, without limitation: 3F8, A 1070722, AR-A 014418, BIO, BlO-acetoxime, L803-mts, SB 216763, SB 415286, TC-G 24, TCS 2002, and TWS 1 19. Accordingly, in other embodiment, one or more of the other known inhibitors of Smad and GSK-3 are used in the methods disclosed herein.
- Hematopoietic stem cell culture media and conditions for culturing said cells are known in the art. Such media supports growth of hematopoietic stem cells.
- the hematopoietic stem cell culture medium comprises at least one hematopoietic cytokine, such as Flt3, SCF, IL-3, or TPO.
- the hematopoietic stem cell culture media comprises SCF, Flt-3L, IL-3 and TPO.
- the cells in (a) are cultured in hematopoietic stem cell culture media for 2-4 days.
- Reprogramming media and conditions for culture are known in the art.
- the cells in (a) are cultured in reprogramming media supplemented with bFGF.
- the reprogramming media comprises DMEM/F12, 20% Knockout Serum Replacement and is supplemented with bFGF.
- the cells are cultured in reprogramming media for 4-7 days.
- the cells in (a) are first cultured in hematopoietic stem cell culture media and then cultured in reprogramming media.
- Basal neural progenitor media is known in the art and supports growth of neural cells.
- the basal media comprises DMEM/F12, 1 xN2 and 1xB27.
- the cells in (c) are optionally cultured in the basal neural progenitor media comprising the inhibitors of Smad and GSK-3 for 10-14 days.
- Neural induction media is known in the art and supports the maintenance of neural progenitor cells.
- the neural induction media comprises basal neural progenitor media supplemented with bFGF and EGF.
- the methods disclosed herein further comprise culturing the cells produced by the methods disclosed herein in differentiation medium under conditions that allow production of differentiated cells. Such conditions are known in the art. See for example, the materials and methods disclosed herein.
- the differentiated cells are neurons, optionally GABA neurons, DA neurons and nociceptive sensory neurons.
- the differentiated cells are glial cells, optionally astrocytes or oligodendrocytes.
- the present disclosure provides isolated progenitor or differentiated cells generated by the methods described herein. Such cells do not express a number of pluripotency markers, such as TRA-1 - 60 or SSEA-3.
- the disclosure provides use of the cells described herein for engraftment or cell replacement.
- the disclosure provides the cells described herein for use in engraftment or cell replacement. Further provided herein is use of the cells described herein in the manufacture of a medicament for engraftment or cell replacement.
- "Engraftment” as used herein refers to the transfer of the induced neural progenitor cells produced by the methods described herein to a subject in need thereof.
- the graft may be allogeneic, where the cells from one subject are transferred to another subject; xenogeneic, where the cells from a foreign species are transferred to a subject; syngeneic, where the cells are from a genetically identical donor or an autograft, where the cells are transferred from one site to another site on the same subject.
- a method of engraftment or cell replacement comprising transferring the cells described herein to a subject in need thereof.
- the term "cell replacement" as used herein refers to replacing cells of a subject, such as neurons or glial cells or neural progenitors.
- cells for engraftment or cell replacement may be modified genetically or otherwise for the correction of disease.
- CD34 + /CD45 + blood cells before or after transfection or transduction with a POU domain containing gene may be genetically modified to overexpress a gene of interest capable of correcting an abnormal phenotype, cells would be then selected and transplanted into a subject.
- CD34 + /CD45 + blood cells or POU domain containing gene-expressing CD34 + /CD45 + blood cells overexpressing or lacking complete expression of a gene that is characteristic of a certain disease would produce neural progenitor or differentiated cells for disease modeling, for example drug screening.
- subject includes all members of the animal kingdom, including human. In one embodiment, the subject is an animal. In another embodiment, the subject is a human.
- the engraftment or cell replacement described herein is for autologous or non-autologous transplantation.
- autologous transplantation refers to providing CD34 + /CD45 + blood cells from a subject, generating neural progenitor or differentiated cells from the isolated CD34 + /CD45 + blood cells by the methods described herein and transferring the generated neural progenitor or differentiated cells back into the same subject.
- non-autologous transplantation refers to providing CD34 + /CD45 + blood cells from a subject, generating neural progenitor or differentiated cells from the isolated CD34 + /CD45 + blood cells by the methods described herein and transferring the generated neural progenitor or differentiated cells back into a different subject.
- the disclosure provides use of the cells described herein as a source of neural cells. Such sources can be used for replacement, research and/or drug discovery.
- the methods and cells described herein may be used for the study of the cellular and molecular biology of neural progenitor cell development, for the discovery of genes, growth factors, and differentiation factors that play a role in differentiation and for drug discovery. Accordingly, also provided herein is a method of screening progenitor cells or cells derived therefrom comprising
- the test agent is a chemical or other substance, such as a drug, being tested for its effect on the differentiation of the cells into specific cell types.
- the analysis may comprise detecting markers of differentiated cell types. For example: for neural differentiation: beta I II tubulin, MAP2, GFAP, Oligo4, Glutamate, GABA, tyrosin hydroxylase, Nurrl , Synapsin); for neural precursors PAX6, SOX2, Nestin, CD133; for sensory neurons BRN3A, ISL1 , NTRK1 , P2x3, and Substance P.
- the test agent is a chemical or drug and the screening is used as a primary or secondary screen to assess the efficacy and safety of the agent.
- Such analysis can include measuring cell proliferation or death or cellular specific features such as Neural signaling, presence of action potential, secretion of certain proteins, activation of specific genes or proteins, activation or inhibition of certain signaling cascades, calcium signaling, and neurite length.
- Also provided herein is a method of screening for a compound that modulates the activity, function, viability and/or morphology of sensory neurons comprising:
- the test compound is screened for the effect of decreasing or increasing viability of sensory neuron cells compared to control. In another embodiment, the test compound is screened for the effect of decreasing or increasing neurite length of the sensory neuron cells compared to control. In an embodiment, identification of a test compound as capable of increasing viability or neurite strength indicates that the compound is a candidate for treating neuropathies, such as diabetic-induced neuropathy.
- the test compound is screened for the effect of causing neuropathy.
- the compound may be a candidate for anti-cancer treatment.
- the test compound is screened in the presence of a chemotherapeutic agent that is known to cause neuropathy and the effect of the test compound in alleviating the neuropathy compared to control is measured.
- test compound is screened for the effect of changes in calcium mobilization.
- Fig.5A Human blood cells from both sources were negative for pluripotent markers (SSEA3, TRA1 -60), early neural markers (Nestin, PAX6) as well as neural crest (NC) markers (p75, CD57) (Fig.5B), thereby excluding the presence of contaminating cells with pluripotent or NPC features within the starting blood samples.
- SSEA3, TRA1 -60 early neural markers
- NC neural crest markers
- iNPC- like clusters appeared within as little as 8-10 days and showed the expression of the neural stem cell marker, Nestin (Fig.1 B and Fig.5C). Addition of these same molecules to human fibroblasts had no effect on NPC generation (Mitchell et al., 2014a; Mitchell et al., 2014b).
- BD-iNPCs derived from either neonatal cord blood or adult peripheral blood consistently expressed neural stem cell associated markers including PAX6, NESTI N, SOX2 and CD133 similar to control human NPCs (Fig.1 F,G and Fig.5F,G).
- cultured BD-iNPCs contained ki67 expressing proliferative cells (Fig.5F) that enabled serial passaging without the loss of NPC marker expression, neural transcriptional programs, or genomic integrity (Fig.5H-J and 6A,B).
- Fig.5F proliferative cells
- Fig.5H-J and 6A,B genomic integrity
- Fib-iNPCs were highly related to primary human NPCs regardless of inhibitor addition (Mitchell et al., 2014b), whereas BD-iNPCs required SMAD+GSK-3 inhibition in order to cluster together with primary NPCs (Fig.2A).
- Investigation of differential gene regulation between +/- inhibitor treated fibroblasts and blood cells during generation of NPCs displayed minimal changes in fibroblast transcriptome compared to blood cells, suggesting a unique role for SMAD+GSK-3 inhibition during blood based OCT4 reprogramming (Fig.2B).
- BD-iNPCs expand and functionally respond to in vivo and directed in vitro differentiation cues
- the present inventors next set out to evaluate the developmental potential of OCT4 induced BD-iNPCs by assessing their ability to functionally differentiate in vivo towards the three main neural lineages.
- BD- iNPCs were transduced with a GFP expressing lentiviral vector and then injected into the brains of p2-p4 mouse pups and allowed to engraft for 3 weeks (Zhu et al., 2014).
- Analysis of GFP signal from sectioned brain tissue as a surrogate of human engraftment revealed multiple sites containing intact human cells (Fig.3A).
- in vitro differentiation allows for the directed production of specific cell types that will likely be useful in near term personalized medicine applications of drug screening/testing rather than cellular transplantation.
- oligodendrocytes possessed astrocyte and oligodendrocyte differentiation potential in vitro as evidenced by GFAP and 04 expression, respectively, with characteristic morphology similar to differentiated cells from human PSCs (Fig.3C, D and Fig.71).
- BD-iNPCs express OCT4 transgene at observable levels, however similar to previous reports (Mitchell et al., 2014b), OCT4 expression is silenced upon complete differentiation towards mature functional cells types (Fig.7K).
- Fig.3E GABA-positive inhibitory neurons were successfully generated (Fig.3E), suggesting BD- iNPCs harbored broad neuronal developmental potential.
- BD-iNPC derived neurons also exhibited a punctate pattern of synapsin expression suggesting the development of synapses (Fig.3F), which was confirmed using electrophysiological analysis (Fig.3G-l). Specifically, upon positive current injection, spontaneous repetitive action potential firing was induced (Fig.3G) and voltage-dependent transient Na + and sustained K + currents were detected (Fig.7L). Application of tetrodotoxin (TTX) blocked rapidly activating and inactivating inward currents, further demonstrating that the differentiated neurons expressed voltage-activated sodium channels associated with primary neurons (Fig.3l). Thus, neurons derived from iNPCs appear to exhibit the functional membrane properties and activities of mature neurons.
- BD-iNPCs neuronal differentiation capacity could be expanded into more specialized neurons, such as dopaminergic (DA) neurons, in response to specific instructions.
- Treatment with Sonic Hedgehog (SHH) and FGF8b (Li et al., 201 1 ) further differentiated BD-iNPCs into neurons expressing tyrosine hydrolase (TH), the rate-limiting enzyme in the synthesis of DA (Fig.3J).
- TH tyrosine hydrolase
- Fig.3J the rate-limiting enzyme in the synthesis of DA
- Fig.3J the rate-limiting enzyme in the synthesis of DA
- These neurons also expressed the nuclear receptor NURR1 (a.k.a. NR4A2), a key regulator of the dopaminergic system (Fig.3J).
- the detection of secreted DA in culture medium further supported the presence of functional dopaminergic neurons in vitro (Fig.3K).
- BD-iNPC generate functional nociceptors that model chemotherapy induced neuropathy
- BD-iNPCs Based on the broad neuronal developmental potential of BD- iNPCs, the transcriptome of BD-iNPCs was further analyzed. These analyses revealed an enrichment of neural crest cell related gene activity compared to that found in blood progenitors (Fig.2C). Recent work has demonstrated the conversion of human fibroblasts to both putative neural crest (Kim et al., 2014), as well as sensory neurons (neural crest derived peripheral neurons) using typical lineage specifying transcription factor reprogramming strategies (Blanchard et al., 2015; Wainger et al., 2015).
- BD-iNPC conversion involves de novo acquisition of neural crest related gene expression (Fig.3M). Based on this observation, it was hypothesized that their developmental potential may extend to the peripheral nervous system derivatives, such as sensory neurons.
- the canonical sensory neuronal markers ISL1 and BRN3A were expressed within differentiated neuron preparations from cord blood and adult peripheral blood BD-iNPCs, in a similar fashion as hESC-derived cells shown previously (Fig.4A).
- sensory culture derived neurons expressed glutamate, consistent with an excitatory glutamatergic neuronal phenotype (Fig.8B) and demonstrated transcript level expression of sensory neuron related genes such as NTRK1 , 2, and 3 receptors, neurofilamin heavy chain peptide (NEFH) and calcitonin related peptide alpha (CALCA) (Fig.8C).
- NTRK1 expressing nociceptive neurons
- BD-iNPCs nociceptive neuron generation from BD-iNPCs
- Fig.4C Induced neurons were often organized into ganglia-like structures in long-term culture and expressed Substance P (TAC1 ) indicating the presence of peptidergic nociceptors (Fig.4D). Moreover, the expression of nociceptor- specific channels and receptors were upregulated during sensory neural induction (Fig.4E). Expression of the purinergic receptor, P2RX3, considered a unique phenotype of human sensory neurons (Jarvis et al., 2002), was confirmed by immunofluorescence analyses (Fig.4F).
- both the TRPV1 vanilloid receptor agonist capsaicin and P2X 3 agonist alpha, beta-methylene ATP ( ⁇ , ⁇ -meATP) could evoke calcium transients in BD-iNPC derived neurons (Caterina et al., 1997), demonstrating functional activity of nociceptive sensory neurons (Fig.4l,J and 8D).
- a selective P2X 3 inhibitor significantly decreased this response (Fig.4K), providing evidence that the ⁇ , ⁇ -methylene-ATP mode of action was indeed through activation of P2X 3 receptors (Fig.4K).
- CIPN chemotherapy-induced peripheral neuropathy
- CIPN chemotherapy-induced peripheral neuropathy
- Fig.4M neurites of sensory neurons generated from human blood were quantified and showed a dose-dependent reduction in length without concomitant loss of viability
- the present inventors provide evidence that small molecule inhibitors targeting SMAD+GSK3 enable ectopic expression of OCT4 to directly convert human blood progenitors into proliferative, non-tumorigenic neural precursors with unique multipotent developmental properties that includes generation of both dopaminergic and sensory neurons.
- purified CD34 + CD45 + blood is devoid of ectoderm derived cells, and as such BD-iNPCs represent evidence for epigenetic conversion of cell fate state from one developmentally distinct cell type to another (Rieske et al., 2005).
- the present disclosure provides a practical and simple approach for generating neural progenitor cells capable of nociceptive neuron differentiation.
- fibroblasts have demonstrated successful conversion towards pain sensing neurons, these studies require a multi-factor trans-differentiation strategy that bypasses the neural progenitor state (Blanchard et al., 2015; Wainger et al., 2015).
- each resulting cell is unique from one another given the heterogeneity of fibroblast populations and complex multi-vector integration.
- BD-iNPCs could aid in realizing goals of better understanding the peripheral-neuropathy component of pain associated with complex disorders such as diabetes and chemotherapy, as well as primary pain that often precedes motor-dysfunction in Parkinson's patients by several years (Tesfaye et al., 2013).
- CD34 + cells from cord blood or adult mobilized peripheral blood were transduced with OCT4 lentivirus in the presence of SCF, Flt-3L, IL3, and TPO cytokines (R&D System). After 48hr, CD34 + blood cells were cultured on Matrigel (BD Biosciences) or irradiated MEFs with reprogramming media and bFGF (R&D System) for 5 days.
- basal media was supplemented with retinoic acid (Sigma), forskolin (Stemgent), BDNF, GDNF (R&D System) and ascorbic acid (Sigma).
- Astrocyte differentiation media was supplemented with 5% FBS.
- Basal media was supplemented with SHH C25II, bFGF and PDGF (R&D System) for 7 days.
- T3 hormone Sigma
- Noggin IGF1 , NT3
- forskolin adapted from (Lujan et al., 2012; Najm et al. , 2013).
- iNPCs were cultivated in basal medium supplemented with SHH C25II without EGF. After 7 days, media was supplemented with, VPA, NT4, BDNF, GDNF, IGF1 and forskolin for 21 days.
- iNPCs were cultured in basal medium supplemented with SHH C25II and FGF8 (R&D System) without bFGF/EGF.
- BDNF BDNF
- GDNF GDNF
- TGFp3 ascorbic acid
- forskolin and DAPT Sigma
- the present inventors adapted: (Chambers et al., 2012; Guo et al., 2013; Lee et al., 2012).
- iNPCs were cultured in basal medium supplemented with SU5402, DAPT and CHIR99021.
- media was supplemented with, BDNF, GDNF, NGF, NT3 (R&D System), ascorbic acid and forskolin for 7-14 days until the desired maturation stage for a given experiment.
- iNPCs or undifferentiated hPSCs (1 x 10 6 cells/mouse) were IT injected into NOD/SCID mice as described previously (Werbowetski-Ogilvie et al., 2009). 8 weeks post-injection, mouse testicles were harvested, sectioned and stained with hematoxylin and eosin. Images were acquired using ScanScope CS digital slide scanner (Aperio, CA, USA).
- Cells were fixed using the BD Cytofix/Cytoperm kit (BD bioscience), including 4% (vol/vol) paraformaldehyde fixation step. Fixed cells were stained using the following antibodies: SSEA3, TRA1 -60, PAX6, p75, CD57 (BD Biosciences), Nestin, NTRK1 (R&D Systems). Unconjugated antibodies were visualized with appropriated fluorochrome conjugated secondary antibody. FACS analysis was performed on a FACSCalibur cytometer (Becton Dickinson Immunocytometry Systems) and analyzed using FlowJo software (Tree Star Inc).
- BD Cytofix/Cytoperm kit BD bioscience
- Fixed cells were stained using the following antibodies: SSEA3, TRA1 -60, PAX6, p75, CD57 (BD Biosciences), Nestin, NTRK1 (R&D Systems). Unconjugated antibodies were visualized with appropriated fluorochrome conjugated secondary antibody. FACS analysis was performed on a FACSCali
- SSEA-3 SSEA-3, TRA-1 -60, OCT4, PAX6, p75, CD57 (BD biosciences), Nestin, TuJ1 , MAP2, 04 (R&D System), Synapsin, TH, BRN3A, ISL1 , P2X3R (Millipore), Glutamate, GABA, GFAP (Sigma), Nurr1 (Santa Cruz), vGluTI (Abeam).
- RNA purification was performed using RNeasy Mini Kit (Qiagen), including DNase I on-column digestion step, according to manufacturer's instructions. Purified RNA was quantified on a Nanodrop 2000 Spectrophotometer (Thermo Scientific). For RT-PCR, cDNA was synthesized from 500ng of total RNA using iScriptTM cDNA Synthesis Kit (BioRad). RT- PCR was performed using Recombinant Taq DNA Polymerase (Thermo Scientific). Random-primed Human Reference cDNA (Clontech) was used as a putative positive control. For RT-qPCR, cDNA was synthesized from ⁇ g of total RNA using Superscript III First-Strand Synthesis (Life Technologies). RT-qPCR was carried out using Platinum SYBR Green qPCR SuperMix-UDG (Life Technologies) utilizing manufacturer's recommended cycling conditions on an Mx3000P QPCR System (Stratagene). See Tables 1 and 2 for primers. Calcium imaging
- Indicated agonists ⁇ , ⁇ -methylene-ATP or capsaicin
- Fluorescence images were collected using an EMCCD camera (Photometries, Arlington, AR) every 2s through a GFP filter cube (Semrock, Rochester, NY).
- ionomycin was added as a second stimulation for the dye loading control.
- the selective P2X3 antagonist A-317491 the indicated concentration of compound was added to the wells 15 min before calcium imaging, and then calcium flux was measured as above.
- ImageJ NIH, Bethesda, MD).
- Patch-clamp recordings were conducted at room temperature (-21 °C) using an Axopatch 200B amplifier (Axon Instruments Inc., USA) from Cerebrasol (Montreal, Canada). Electrodes had a resistance of 2-4 ⁇ when filled with recording solutions.
- the external recording solution contained 140 mM NaCI, 4.7 mM KCI, 1 .2mM MgCI 2 , 2.5mM CaCI 2 , and 10mM HEPES (pH 7.3), adjusted to 320mOsm/l with glucose. Internal solutions.
- the intracellular solution contained 100mM CsF, 45mM CsCI, 10mM NaCI, 5mM EGTA, 1 mM MgCI 2 , 10mM HEPES (pH 7.3) adjusted to 300mOsm with sucrose.
- pipette solution of the following composition was used: 130mM KCI, 0.5mM EGTA, 10mM HEPES, 1 mM MgCI 2 , 5mM Mg-ATP and 3mM Na-GTP (pH 7.3), adjusted to 310mOsm/l with glucose. Data were filtered at 1 KHz and digitized at 10 kHz.
- RNA from hFib-iNSCOCT4 and hBD-iNPCOCT4 with or without SMAD/GSK-3 inhibitors was hybridized to Affymetrix Human Gene 1 .0 ST arrays (London Regional Genomics Centre). Normalized expression data was applied to create hierarchical clustering and statistically significant gene lists (multiple test corrected p ⁇ 0.05, fold change > 1 .5) using Partek Genomics Suite 6.6 (Partek Inc., St Louis, MO, USA). For hierarchical clustering, primary human neural stem/progenitor cells were obtained from publicly available GEO source (GSE27505).
- Genomic DNA from samples was isolated using DNeasy kit (Qiagen) and concentrations were measured using NanoDrop.
- Sample DNA was hybridized to Agilent human CGH 4x44k microarrays (Princess Margaret Genomics Centre, Toronto, ON). Standard human genomic DNA was hybridized to arrays as a reference. Partek Genomic Suite 6.6 software was used for analysis. Criteria of diploid copy number higher than 2.5 being as amplification and lower than 1 .5 being as deletion was used, as well as statistical segmentation parameters with minimum genomic markers of 10 to specify genomic region and p-value threshold 0.001 .
- Table 1 qRT-PCR Primer List , Related to Figures 2, 4 and 5.
- GATA1 F 5 ' -GGGATC AC ACTGAGCTTGC (SEQ ID NO: l)
- R 5'-ACCCCTGATTCTGGTGTGG (SEQ ID NO:2)
- HOXB4 F 5 ' -C CTGGATGC GC AAAGTTC A (SEQ ID NO:3)
- R 5'-AATTCCTTCTCCAGCTCCAAGA (SEQ ID NO:4)
- BRN2 F 5 ' - AAT AAGGC AA AAGGAAAGC AACT (SEQ ID NO:9)
- DCX1 F 5'-AGACCGGGGTTGTCAAAAAACTCTAC (SEQ ID NO: 11)
- HES1 F 5'-GAGCACAGAAAGTCATCAAAGC (SEQ ID NO: 15)
- MYT1L F 5 ' -C AATGGAAAGGGATTTTAAGC A (SEQ ID NO: 17)
- NEUROD1 F 5'-GTTATTGTGTTGCCTTAGCACTTC (SEQ ID NO:21)
- NOTCH2 F 5 ' - AC ATC ATC AC AGACTTGGTC (SEQ ID NO:25)
- PAX6 F 5 ' -C C GGC AGA AGATTGT AGAGC (SEQ ID NO:27)
- BRN3A F 5'-GTACCCGTCGCTGCACTC (SEQ ID NO:31)
- NTRK1 F 5 ' -TTGGC ATGAGC AGGGAT ATCT (SEQ ID NO:35)
- TAC1 F 5 ' -GC AGAAGAAAT AGGAGC C AATG (SEQ ID NO:37)
- TRPV1 F 5'-GGCTGTCTTCATCATCCTGCTGCT (SEQ ID NO:39)
- R:5'-GGTTGTTTGCATCAGGGTCT SCN10A F:5'-CAAATCTGAAACTGCTTCTGCCACA (SEQ ID NO:45) R:5'-CTAGGGCCCAGGGGCAATCAGCTCC (SEQ ID NO:46)
- SCN11A F 5 ' -C CC AGC AGCTGTT AAAGGAG (SEQ ID NO:47)
- TRPM8 F 5'-CAGCGCTGGAGGTGGATATTC (SEQ ID NO:49)
- NTRK1 F GGCAGAGGTCTCTGTTCAGG (SEQ ID NO:51)
- NTRK2 F GTGGCGGAAAATCTTGTAGG (SEQ ID NO: 53)
- NTRK3 F CAACTGCAGCTGTGACATCC (SEQ ID NO:55)
- NEFH F GGTGAACACAGACGCTATGC (SEQ ID N057)
- GUSB F ACGACACCCACCACCTACAT (SEQ ID NO:61)
- TBP F GAAC C AC GGC ACTGATTTTC (SEQ ID NO:63)
- Intraepidermal nerve fiber loss corresponds to the development of taxol-induced hyperalgesia and can be prevented by treatment with minocycline. Pain 152, 308-313.
- the capsaicin receptor a heat-activated ion channel in the pain pathway. Nature 389, 816-824.
- Somatic transcriptome priming gates lineage-specific differentiation potential of human-induced pluripotent stem cell states. Nature communications 5, 5605.
- Human fibroblast-derived cell lines have characteristics of embryonic stem cells and cells of neuro-ectodermal origin. Differentiation; research in biological diversity 73, 474-483.
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| CA2986157A1 (en) | 2016-11-24 |
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