WO2016133380A8 - Methods and snp detection kits for predicting palm oil yield of a test oil palm plant - Google Patents
Methods and snp detection kits for predicting palm oil yield of a test oil palm plant Download PDFInfo
- Publication number
- WO2016133380A8 WO2016133380A8 PCT/MY2015/000061 MY2015000061W WO2016133380A8 WO 2016133380 A8 WO2016133380 A8 WO 2016133380A8 MY 2015000061 W MY2015000061 W MY 2015000061W WO 2016133380 A8 WO2016133380 A8 WO 2016133380A8
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- oil
- palm
- methods
- predicting
- snp
- Prior art date
Links
- 238000000034 method Methods 0.000 title abstract 4
- 235000019482 Palm oil Nutrition 0.000 title abstract 3
- 239000002540 palm oil Substances 0.000 title abstract 3
- 240000003133 Elaeis guineensis Species 0.000 title 1
- 238000001514 detection method Methods 0.000 title 1
- 241000512897 Elaeis Species 0.000 abstract 2
- 239000003550 marker Substances 0.000 abstract 2
- 238000013517 stratification Methods 0.000 abstract 2
- 241000196324 Embryophyta Species 0.000 abstract 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Immunology (AREA)
- Mycology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Botany (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Methods for predicting palm oil yield of a test oil palm plant are disclosed. The methods comprise determining, from a sample of a test oil palm plant of a population, at least a first SNP genotype, corresponding to a first SNP marker, located in a first QTL for a high-oil- production trait and associated, after stratification and kinship correction, with the high-oil- production trait with a genome-wide -log10(p-value) of at least 4.0 in the population or having a linkage disequilibrium r2 value of at least 0.2 with respect to a first other SNP marker linked thereto and associated, after stratification and kinship correction, with the high-oil-production trait with a genome-wide -log10(p-value) of at least 4.0 in the population. The methods also comprise comparing the first SNP genotype to a corresponding first reference SNP genotype and predicting palm oil yield of the test plant based on extent of matching of the SNP genotypes.
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
SG11201706773YA SG11201706773YA (en) | 2015-02-18 | 2015-07-16 | Methods and snp detection kits for predicting palm oil yield of a test oil palm plant |
EP15767604.0A EP3259367A1 (en) | 2015-02-18 | 2015-07-16 | Methods and snp detection kits for predicting palm oil yield of a test oil palm plant |
CN201580078934.XA CN107580631B (en) | 2015-02-18 | 2015-07-16 | Method for predicting palm oil yield of test oil palm plant and SNP detection kit |
US15/552,190 US20180346997A1 (en) | 2015-02-18 | 2015-07-16 | Methods and snp detection kits for predicting palm oil yield of a test oil palm plant |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
MYPI2015700516A MY187907A (en) | 2015-02-18 | 2015-02-18 | Methods and snp detection kits for predicting palm oil yield of a test oil palm plant |
MYPI2015700516 | 2015-02-18 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2016133380A1 WO2016133380A1 (en) | 2016-08-25 |
WO2016133380A8 true WO2016133380A8 (en) | 2016-11-10 |
Family
ID=54186254
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/MY2015/000061 WO2016133380A1 (en) | 2015-02-18 | 2015-07-16 | Methods and snp detection kits for predicting palm oil yield of a test oil palm plant |
Country Status (6)
Country | Link |
---|---|
US (1) | US20180346997A1 (en) |
EP (1) | EP3259367A1 (en) |
CN (1) | CN107580631B (en) |
MY (1) | MY187907A (en) |
SG (1) | SG11201706773YA (en) |
WO (1) | WO2016133380A1 (en) |
Families Citing this family (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
MY180695A (en) * | 2015-08-06 | 2020-12-07 | Sime Darby Plantation Intellectual Property Sdn Bhd | Methods for predicting palm oil yield of a test oil palm plant |
US20180305775A1 (en) * | 2015-10-23 | 2018-10-25 | Sime Darby Plantation Intellectual Property Sdn. Bhd. | Methods for predicting palm oil yield of a test oil palm plant |
MY186767A (en) * | 2015-12-30 | 2021-08-18 | Sime Darby Plantation Intellectual Property Sdn Bhd | Methods for predicting palm oil yield of a test oil palm plant |
CN108796095B (en) * | 2018-07-03 | 2021-11-26 | 中国水产科学研究院黑龙江水产研究所 | Breeding method for improving conversion efficiency of carp feed |
CN111986731B (en) * | 2020-08-05 | 2023-08-11 | 广西大学 | Method for improving GWAS cause mutation positioning efficiency |
CN113430297B (en) * | 2021-07-23 | 2022-03-08 | 中国林业科学研究院亚热带林业研究所 | DNA fragment related to content of palmitic acid in oil-tea camellia seed oil, SNP molecular marker closely linked with DNA fragment and application of SNP molecular marker |
CN117660687A (en) * | 2023-12-13 | 2024-03-08 | 石家庄博瑞迪生物技术有限公司 | High-oil peanut whole genome molecular marker combination, probe, gene chip and application |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
MY188470A (en) | 2013-02-21 | 2021-12-10 | Malaysian Palm Oil Board | Method for identification of molecular markers linked to height increment |
MY156871A (en) * | 2013-07-18 | 2016-04-07 | Malaysian Palm Oil Board | Detection methods for oil palm shell alleles |
MY183021A (en) * | 2014-05-14 | 2021-02-05 | Acgt Sdn Bhd | Method of predicting or determining plant phenotypes |
-
2015
- 2015-02-18 MY MYPI2015700516A patent/MY187907A/en unknown
- 2015-07-16 WO PCT/MY2015/000061 patent/WO2016133380A1/en active Application Filing
- 2015-07-16 CN CN201580078934.XA patent/CN107580631B/en active Active
- 2015-07-16 US US15/552,190 patent/US20180346997A1/en not_active Abandoned
- 2015-07-16 EP EP15767604.0A patent/EP3259367A1/en not_active Withdrawn
- 2015-07-16 SG SG11201706773YA patent/SG11201706773YA/en unknown
Also Published As
Publication number | Publication date |
---|---|
EP3259367A1 (en) | 2017-12-27 |
CN107580631A (en) | 2018-01-12 |
MY187907A (en) | 2021-10-28 |
US20180346997A1 (en) | 2018-12-06 |
SG11201706773YA (en) | 2017-09-28 |
WO2016133380A1 (en) | 2016-08-25 |
CN107580631B (en) | 2021-10-26 |
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