WO2016097305A1 - Novel method for the detection of pglu-abeta peptides - Google Patents

Novel method for the detection of pglu-abeta peptides Download PDF

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Publication number
WO2016097305A1
WO2016097305A1 PCT/EP2015/080518 EP2015080518W WO2016097305A1 WO 2016097305 A1 WO2016097305 A1 WO 2016097305A1 EP 2015080518 W EP2015080518 W EP 2015080518W WO 2016097305 A1 WO2016097305 A1 WO 2016097305A1
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antibody
epitope
peptide
pglu
detection
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PCT/EP2015/080518
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French (fr)
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Martin Kleinschmidt
Torsten Hoffmann
Jens-Ulrich Rahfeld
Stephan Schilling
Beena PUNNAMOOTTIL
Michael Adler
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Probiodrug Ag
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Priority to EP15823328.8A priority Critical patent/EP3234611A1/en
Priority to US15/536,014 priority patent/US20170363645A1/en
Priority to JP2017532684A priority patent/JP2018501482A/en
Publication of WO2016097305A1 publication Critical patent/WO2016097305A1/en

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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6893—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
    • G01N33/6896—Neurological disorders, e.g. Alzheimer's disease
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6804—Nucleic acid analysis using immunogens
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/10—Immunoglobulins specific features characterized by their source of isolation or production
    • C07K2317/14—Specific host cells or culture conditions, e.g. components, pH or temperature
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
    • C07K2317/34—Identification of a linear epitope shorter than 20 amino acid residues or of a conformational epitope defined by amino acid residues
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701—Details
    • G01N2333/4709—Amyloid plaque core protein
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2458/00—Labels used in chemical analysis of biological material
    • G01N2458/10—Oligonucleotides as tagging agents for labelling antibodies
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/28—Neurological disorders
    • G01N2800/2814—Dementia; Cognitive disorders
    • G01N2800/2821—Alzheimer
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/52—Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis

Definitions

  • the invention relates to a highly sensitive method for the detection of pGlu-Abeta (pGlu- ⁇ ) peptides and the use of this method in the diagnosis of neurodegenerative diseases, such as Alzheimer's disease and Mild Cognitive Impairment.
  • the invention further concerns a novel method for monitoring the effectiveness of a treatment of neurodegenerative diseases by monitoring changes in the level of pGlu- ⁇ peptides.
  • Alzheimer's disease is the most common form of dementia and has a prevalence of approximately 65-70% among all dementia disorders (Blennow et al., 2006). Resulting from increased life expectancy, this disease has become a particular issue in highly developed industrialised countries like Japan and China as well as in the US and Europe.
  • the number of Alzheimer patients is estimated to increase from 24 million in 2001 to 81 million in 2040 (Ferri et at., 2005).
  • the costs for treatment and care of AD patients worldwide amount to approximately 250 billion US dollars per year.
  • Alzheimer's disease The progression of the sporadic form of the disease is relatively slow and Alzheimer's disease will usually last for about 10-12 years after the onset of first symptoms.
  • AD Alzheimer's disease
  • a good diagnosis with a reliability of more than 90% is only possible in the later stages of the disease.
  • diagnosis here relies on the use of certain criteria according to Knopman et al., 2001 ; Waldemar et al., 2007 or Dubois et al., 2007.
  • Neurodegeneration starts however 20 to 30 years before the first clinical symptoms are noticed (Blennow et at., 2006; Jellinger KA, 2007).
  • MCI mimild cognitive impairment
  • Biomarkers for Alzheimer's disease have already been described in the prior art. Alongside well known psychological tests such as e.g. ADAS-cog, MMSE, DemTect, SKT or the Clock Drawing test, biomarkers are supposed to improve diagnostic sensitivity and specificity for first diagnosis as well as for monitoring the progression of the disease. In relation to the current status of development of biomarkers for AD/MCI it was proposed to correlate the disease in the future with the other diagnostic criteria (Whitwell et al., 2007; Panza et al., 2007; Hyman SE, 2007). Biomarkers are supposed to support the classical neuro-psychological tests in the future.
  • Magnetic resonance imaging is an imaging process which allows detection of degenerative atrophies in the brain (Barnes J et al., 2007; Vemuri et al., 2008).
  • MTA medial temporal lobe
  • Mild MTA is not encountered more frequently in other dementias (Barkhof et al., 2007) but it does correlate with MCI (Mevel et al, 2007). For this reason it is not possible to determine from MRI data alone whether the neurodegeneration is Alzheimer's disease or an early stage of Alzheimer's disease.
  • a further imaging method is Positron Emission Tomography (PET) which visualises the accumulation of a detector molecule (PIB) on amyloid deposits.
  • PET Positron Emission Tomography
  • C detector molecule
  • CBF-SPECT CMRg1 -PET (glucose metabolism proton spectroscopy (H-1 MRS), high field strength functional MRI, voxel-based morphometry, enhanced activation of the mediobasal temporal lobe (detected by fMRI, (R)-[( )C]PK1 1 195 PET for the detection of microglial cells (Huang et al., 2007; Kantarci et al., 2007; Petrella et al., 2007; Hamalainen et al., 2007; Kircher et al., 2007; Kropholler et al., 2007).
  • Senile plaques are one of the pathological characteristics of Alzheimer's disease. These plaques consist mostly of ⁇ (1 -42) peptides (Attems J, 2005). In some studies it could be shown that a low level of ⁇ (1 -42) in CSF of MCI patients correlates specifically with the further development of Alzheimer's disease in its progression (Blennow and Hampel, 2003; Hansson et al., 2006 and 2007). The reduction in CSF is probably due to enhanced aggregation of ⁇ (1 -42) in the brain (Fagan et al., 2006; Prince et al., 2004; Strozyk et al., 2003).
  • CSF samples are usually analyzed via a comparative proteomic analysis which results in a diagnosis of AD with enhanced sensitivity and also to enable the differentiation from other degenerative dementia disorders (Finehout et ai, 2007; Castano et ai, 2006; Zhang et ai, 2005; Simonsen et ai, 2007; Lescuyer et ai, 2004; Abdi et ai, 2006).
  • the potential new biomarker should be analyzed in detail for its suitability and correlation with pathological causes.
  • a typical example for a biomarker which was found by a proteomic analysis is truncated cystatin C as a biomarker for multiple sclerosis; this biomarker was later proven to be a storage artefact (Irani et al., 2006; Hansson et al., 2007(2)).
  • biomarkers i.e. the ⁇ peptides
  • further inflammatory plasma markers are used for the early diagnosis of dementia (Ravaglia et ai, 2007; Engelhart et ai, 2004) in particular for Alzheimer's (Motta et ai, 2007). All of these are still under discussion. Further possible biomarkers were also found via comparative proteomic analysis of plasma from AD patients and healthy controls (German et al., 2007; Ray et al., 2007). The future will show whether these biomolecules are indeed specific for Alzheimer's disease and are suitable as biomarkers. There is no convincing or suitable data which would show either specificity or suitability of any of the biomarkers discussed above.
  • plasma ⁇ (1 -42) level is not a reliable biomarker for MCI or AD (Blasko et al., 2008; Mehta et al., 2000; Brettschneider et al., 2005), whereas a decrease of the ratio plasma ⁇ (1 -38) / ⁇ (1 -40) is considered a biomarker for vascular dementia and comes close to the predictability of CSF markers (Bibl et al., 2007).
  • ⁇ oligomers are supposed to play a decisive role in initiating the neurodegenerative process (Walsh & Selkoe, 2007).
  • the neurotoxic effect was shown for ⁇ dimers with 8 kDa to the point of protofibrils with over 100 kDa (Lambert et al., 1998; Walsh et al, 2002; Keayed et al., 2004; Cleary et al., 2005).
  • ⁇ oligomers were found in human liquor (Pitschke et al., 1998; Santos et al., 2007; Klyubin et al., 2008).
  • oligomers have also an influence on the determination of the ⁇ concentration in human samples.
  • the oligomerization leads to masking of the C-terminal epitopes of ⁇ peptides (Roher et al., 2000) yielding to underestimated ⁇ levels detected by C-terminal specific ELISA (Stenh et al., 2005).
  • Englund et al., 2009 determined the ⁇ 1 -42 oligomer ratio in human CSF samples by measuring the ⁇ 1 -42 concentration under non-denaturing conditions via ELISA and under denaturing conditions using SDS-PAGE followed by Western Blot analysis.
  • Another more common approach is the direct measurement of ⁇ oligomers.
  • ELISA or ELISA-type systems are used for quantification of ⁇ , and recently also ⁇ oligomers, in plasma.
  • the specification of such detections systems is usually only unsatisfactorily analyzed or are completely disregarded.
  • a critical item like the recovery rate is not analyzed or is not sufficiently investigated in the publications.
  • the recovery rate is however decisive for giving a complete picture of those ⁇ peptides or oligomers which occur in plasma. Differences between the studies can also result from the differences in these rates.
  • a further important characteristic of an ELISA or multiplex system is its linearity.
  • the concentrations determined for the analytes in plasma should only depend on the dilution used in the measurement to a very low degree or not at all.
  • CSF cerebrospinal fluid
  • ⁇ 4 2 42-amino acid peptide
  • Another form of this protein derived from the same precursor contains only 40 amino acids ( ⁇ 40 ). Deposits of this protein are found in the brains of AD victims.
  • N-terminally modified ⁇ peptides are abundant (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, ⁇ N3(pE), in senile plaques. Neuron 14, 457-466 (1995) ; Russo, C. et al. Presenilin-1 mutations in Alzheimer's disease.
  • beta-amyloid peptide species ⁇ N3(pE)
  • pGlu may be formed following ⁇ '-cleavage by BACE1 , resulting in ⁇ - ⁇ (1 1 -42) (Naslund, J. et al.
  • the ⁇ (3-42 peptides coexist with ⁇ (1 -40/1 -42) peptides (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, Abeta N3pE, in senile plaques. Neuron 14, 457-466 (1995) ; Saido, T.C, Yamao, H., Iwatsubo, T. & Kawashima, S. Amino- and carboxyl-terminal heterogeneity of beta-amyloid peptides deposited in human brain. Neurosci. Lett.
  • ⁇ 3-pyroglutamyl and 1 1 -pyroglutamyl peptides found in senile plaque have greater beta-sheet forming and aggregation propensities in vitro than full-length ⁇ .
  • reduction of ⁇ - ⁇ (3-42) formation should destabilize the peptides by making them more accessible to degradation and would, in turn, prevent the formation of higher molecular weight ⁇ aggregates and enhance neuronal survival.
  • glutaminyl cyclase is capable to catalyze pGlu- ⁇ (3-42) formation under mildly acidic conditions, that specific QC inhibitors prevent pGlu- ⁇ (3-42) generation in vitro and that, therefore, inhibition of glutaminyl cyclase is a novel therapeutic concept for the causative treatment of Alzheimer's disease (Schilling, S., Hoffmann, T., Manhart, S., Hoffmann, M. & Demuth, H.-U. Glutaminyl cyclases unfold glutamyl cyclase activity under mild acid conditions.
  • pGlu- ⁇ peptides occur in high concentrations in senile plaques of the patients. I.e. the level of pGlu- ⁇ peptides and/or changes in their level can only be determined by post mortem analysis of brain tissue. In contrast, only trace amounts or very low levels of pGlu- ⁇ peptides can be found in other biological fluids, such as CSF, blood, plasma, serum or urine, which would allow a continuous monitoring of the pGlu- ⁇ peptides during the life-time of the patients from time points prior to the onset of the diseases.
  • Age-Associated Cognitive Decline (AACD) and Mild Cognitive Impairment (MCI) are terms used to identify individuals who experience a cognitive decline that falls short of dementia. These terms are equivalent, MCI being a more recently adopted term, and are used interchangeably throughout this application. Satisfaction of criteria (World Health Organization) for this diagnosis requires a report by the individual or family of a decline in cognitive function, which is gradual, and present at least 6 months. There may be difficulties across any cognitive domains (although memory is impaired in the vast majority of cases), and these must be supported by abnormal performance on quantitative cognitive assessments for which age and education norms are available for relatively healthy individuals (i.e., the patient is compared to normal subjects his/her own age) . Performance must be at least 1 SD below the mean value for the appropriate population on such tests.
  • an amount of a pGlu- ⁇ peptide in a biological sample obtained from a subject that deviates from a reference amount in a control person can be positively correlated to a neurological disease state.
  • the correlation of the presence of pGlu- ⁇ peptide with the disease state represents a positive and more direct test for diagnosis in a patient suffering from one of the neurodegenerative diseases described above.
  • the present invention is particularly based on the development of a novel assay method, which shows a dramatically improved sensitivity for the detection of pGlu- ⁇ peptides in biological samples.
  • an objective of the present invention to provide an easily applicable biological sample test for predicting, diagnosing, or prognosticating AD and MCI using pGlu- ⁇ peptides as a diagnostic marker.
  • This easily applicable biological sample test is also suitable for monitoring the efficacy of novel treatments for AD and MCI.
  • the present invention aims at providing pGlu- ⁇ peptides as diagnostic markers which can be determined with reliable methods and can be used for reliable and clear prediction of AD and MCI.
  • a highly sensitive method for the detection of an ⁇ target peptide in a biological sample comprising a capture reagent which is specific for said ⁇ target peptide; and an ⁇ target peptide detection complex, said method comprising the steps of:
  • the detection complex comprises an ⁇ target peptide specific antibody and a nucleic acid marker.
  • the ⁇ target peptide is a pGlu- ⁇ peptide.
  • the invention provides the use of a the novel method for the detection of an ⁇ target peptide, such as a pGlu- ⁇ peptide in a biological sample in a method of diagnosing or monitoring a neurodegenerative disorder, such as Alzheimer's disease and Mild Cognitive Impairment.
  • an ⁇ target peptide such as a pGlu- ⁇ peptide
  • a neurodegenerative disorder such as Alzheimer's disease and Mild Cognitive Impairment.
  • a method of diagnosing or monitoring a neurodegenerative disease such as Alzheimer's disease and Mild Cognitive Impairment, which comprises determining the level of a pGlu- ⁇ peptide in a biological sample from a test subject, comprising the following steps: determining a first level of a pGlu- ⁇ peptide in a biological sample from a subject suspected to be afflicted with said neurodegenerative disease with a method according to present invention;
  • the invention provides a method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprising determining determining the level of a pGlu- ⁇ peptide in a biological sample from a test subject with a method according to present invention.
  • the invention provides a kit for diagnosing a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, which comprises at least one detection complex and instructions for using the kit, wherein said detection complex comprises a detection antibody capable of binding an ⁇ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules capable of specifically binding said antibody and the nucleic acid marker, and wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of a pGlu- ⁇ peptide.
  • a neurodegenerative disease such as Alzheimer's disease or Mild Cognitive Impairment
  • Olemeric refers to a limited number of aggregated ⁇ peptide monomer units. Examples of such oligomers include dimers, trimers and tetramers. The term “disaggregation” refers to the process of converting oligomeric forms of ⁇ peptide to monomeric forms of ⁇ peptide.
  • Capture antibody and “detection antibody” in the sense of the present application is intended to encompass those antibodies which bind to an ⁇ peptide or a pGlu- ⁇ peptide as the analyte.
  • the capture antibodies and detection antibodies bind to the ⁇ peptide with a high affinity.
  • high affinity means an affinity with a KD value of 10 7 M or better, such as a K D value of 10 ⁇ 8 M or better or even more particularly, a K D value of 10 "9 M to 10 " 2 M.
  • antibody is used in the broadest sense and specifically covers intact monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g. bispecific antibodies) formed from at least two intact antibodies, and antibody fragments as long as they exhibit the desired biological activity.
  • the antibody may be an IgM, IgG (e.g. lgG1 , lgG2, lgG3 or lgG4), IgD, IgA or IgE, for example.
  • the antibody is not an IgM antibody.
  • the "desired biological activity" is binding to a target ⁇ peptide.
  • Antibody fragments comprise a portion of an intact antibody, generally the antigen binding or variable region of the intact antibody.
  • antibody fragments include Fab, Fab', F(ab')2, and Fv fragments: diabodies; single-chain antibody molecules; and multispecific antibodies formed from antibody fragments.
  • monoclonal antibody refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e. the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to “polyclonal antibody” preparations which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen. In addition to their specificity, the monoclonal antibodies can frequently be advantageous in that they are synthesized by the hybridoma culture, uncontaminated by other immunoglobulins.
  • the "monoclonal” indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring production of the antibody by any particular method.
  • the monoclonal antibodies to be used in accordance with the present invention may be made by the hybridoma method first described by Kohler et al., Nature, 256:495 (1975), or may be made by generally well known recombinant DNA methods.
  • the “monoclonal antibodies” may also be isolated from phage antibody libraries using the techniques described in Clackson et at., Nature, 352:624-628 (1991 ) and Marks et ai, J. Mol.
  • the monoclonal antibodies herein specifically include chimeric antibodies (immunoglobulins) in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity.
  • chimeric antibodies immunoglobulins in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity.
  • Humanized forms of non-human (e.g., murine) antibodies are chimeric immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab', F(ab')2 or other antigen- binding subsequences of antibodies) which contain a minimal sequence derived from a non- human immunoglobulin.
  • humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a complementarity-determining region (CDR) of the recipient are replaced by residues from a CDR of a non-human species (donor antibody) such as mouse, rat or rabbit having the desired specificity, affinity, and capacity.
  • CDR complementarity-determining region
  • donor antibody such as mouse, rat or rabbit having the desired specificity, affinity, and capacity.
  • Fv framework region (FR) residues of the human immunoglobulin are replaced by corresponding non-human residues.
  • humanized antibodies may comprise residues which are found neither in the recipient antibody nor in the imported CDR
  • the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non- human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence.
  • the humanized antibody optimally also will comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin.
  • Fc immunoglobulin constant region
  • the humanized antibody includes a PrimatizedTM antibody wherein the antigen-binding region of the antibody is derived from an antibody produced by immunizing macaque monkeys with the antigen of interest or a "camelized" antibody.
  • Single-chain Fv or “sFv” antibody fragments comprise the V H and V L domains of an antibody, wherein these domains are present in a single polypeptide chain.
  • the Fv polypeptide further comprises a polypeptide linker between the VH and VL domains which enables the sFv to form the desired structure for antigen binding.
  • diabodies refers to small antibody fragments with two antigen-binding sites, which fragments comprise a heavy-chain variable domain (VH) connected to a light-chain variable domain (V D ) in the same polypeptide chain (VH - V D ) .
  • VH heavy-chain variable domain
  • V D light-chain variable domain
  • the domains are forced to pair with the complementary domains of another chain and create two antigen-binding sites.
  • Diabodies are described more fully in Hollinger et ai, Proc. Natl. Acad. Sol. USA, 90:6444-6448 (1993).
  • an “isolated” antibody is one which has been identified and separated and/or recovered from a component of its natural environment. Contaminant components of its natural environment are materials which would interfere with diagnostic or therapeutic uses for the antibody, and may include enzymes, hormones, and other proteinaceous or non-proteinaceous solutes.
  • the antibody will be purified (1 ) to greater than 95% by weight of antibody as determined by the Lowry method, and most particularly more than 99% by weight, (2) to a degree sufficient to obtain at least 15 residues of N-terminal or internal amino acid sequence by use of a spinning cup sequenator, or (3) to homogeneity by SDS-PAGE under reducing or non-reducing conditions using Coomassie blue or, suitably, silver stain.
  • Isolated antibody includes the antibody in situ within recombinant cells since at least one component of the antibody's natural environment will not be present. Ordinarily, however, isolated antibody will be prepared by at least one purification step.
  • the expressions "cell”, “cell line,” and “cell culture” are used interchangeably and all such designations include progeny.
  • the words “transformants” and “transformed cells” include the primary subject cell and culture derived therefrom without regard for the number of transfers. It is also understood that all progeny may not be precisely identical in DNA content, due to deliberate or inadvertent mutations. Mutant progeny that have the same function or biological activity as screened for in the originally transformed cell are included. Where distinct designations are intended, this will be clear from the context.
  • polypeptide As used herein, are interchangeable and are defined to mean a biomolecule composed of amino acids linked by a peptide bond.
  • the terms “a”, “an” and “the” as used herein are defined to mean “one or more” and include the plural unless the context is inappropriate.
  • Amyloid ⁇ , ⁇ or ⁇ -amyloid is an in the art recognized term and refers to amyloid ⁇ proteins and peptides, amyloid ⁇ precursor protein (APP), as well as modifications, fragments and any functional equivalents thereof.
  • amyloid ⁇ as used herein is meant any fragment produced by proteolytic cleavage of APP but especially those fragments which are involved in or associated with the amyloid pathologies including, but not limited to, ⁇ (1 -38) of SEQ ID NO: 1 , ⁇ (1 -39) of SEQ ID NO: 2, ⁇ (1 -40) of SEQ ID NO: 3, ⁇ (1 -41 ) of SEQ ID NO: 4, ⁇ (1 -42) of SEQ ID NO: 5, and ⁇ (1 -43) of SEQ ID NO: 6.
  • fragments of ⁇ peptides are all amyloid ⁇ peptides, which comprise a core amyloid ⁇ sequence of ⁇ (1 1 -38) of SEQ ID NO: 19. Further suitably for the purpose of the present invention are all amyloid ⁇ peptides, which comprise the core sequence of ⁇ (15-38) of SEQ ID NO: 25.
  • Such ⁇ fragments, which comprise the amino acid sequence of ⁇ (1 1 -38) of SEQ ID NO: 19 or of ⁇ (15-38) of SEQ ID NO: 25 have been shown to accumulate in a subject as a consequence of a neurodegenerative disorder, such as Alzheimer's disease and Mild Cognitive Impairment.
  • ⁇ fragments are examples of ⁇ fragments.
  • Modified Amyloid ⁇ , ⁇ or ⁇ -amyloid encompasses all modifications at various amino acid positions in the amyloid ⁇ proteins and peptides, amyloid ⁇ precursor protein (APP), fragments and functional equivalents thereof.
  • Useful in the present context are modifications at the N- and/or C-terminal amino acids of said amyloid ⁇ proteins and peptides, amyloid ⁇ precursor protein (APP), fragments and functional equivalents.
  • Particularly useful are modifications at glutamine and glutamate residues, such as the cyclization of N-terminal glutamine or glutamate residues to pyroglutamate.
  • Suitable examples according to the present invention are the amyloid ⁇ peptides of SEQ ID Nos.
  • modified ⁇ peptides are the "pGlu- ⁇ peptides”.
  • pGlu- ⁇ peptides in the context of the present invention relate to the following N-terminally pyroglutamated forms of ⁇ and ⁇ fragments:
  • “Functional equivalents” encompass all those mutants or variants of ⁇ peptides or pGlu- ⁇ peptides which might naturally occur in the patient group which has been selected to undergo the method for detection or method for diagnosis as described according to the present invention. More particularly, “functional equivalent” in the present context means that the functional equivalents of ⁇ peptides pGlu- ⁇ peptides are mutants or variants thereof and have been shown to accumulate in Alzheimer's disease. The functional equivalents have no more than 30, such as 20, e.g. 10, particularly 5 and most particularly 2, or only 1 mutation(s) compared to the respective ⁇ peptide or pGlu- ⁇ peptide..
  • ⁇ (1 -40) SEQ ID NO. 2
  • ⁇ (1 -42) SEQ ID NO. 1
  • Functional equivalents also encompass ⁇ peptides derived from amyloid precursor protein bearing mutations next to the ⁇ - or ⁇ -secretase cleavage site such as the Swedish, Austrian, French, German, Florida, London, Indiana and Australian variations (Irie et al., 2005).
  • ⁇ target peptide includes "Amyloid ⁇ , ⁇ or ⁇ -amyloid", “fragments of ⁇ peptides”, “Modified Amyloid ⁇ , ⁇ or ⁇ -amyloid”, “pGlu- ⁇ peptides” and “Functional equivalents” of the all of those.
  • the " ⁇ target peptide” is a “pGlu- ⁇ peptides", fragment of functional equivalent thereof.
  • sandwich ELISAs usually involve the use of two antibodies, each capable of binding to a different immunogenic portion, or epitope, of the protein to be detected.
  • sandwich assay the test sample analyte is bound by a first antibody which is immobilized on a solid support, and thereafter a second antibody binds to the analyte, thus forming an insoluble three-part complex.
  • the second antibody may itself be labeled with a detectable moiety (direct sandwich assays) or may be measured using an anti-immunoglobulin antibody that is labeled with a detectable moiety (indirect sandwich assay).
  • sandwich assay is an ELISA assay, in which case the detectable moiety is an enzyme.
  • nucleic acid marker or "nucleic acid reporter” refers to a nucleic acid molecule that will produce a detection product of a predicted size or other selected characteristic when used with appropriately designed oligonucleotide primers in a nucleic acid amplification reaction, such as a PCR reaction, preferably a real time PCR reaction. Skilled artisans will be familiar with the design of suitable oligonucleotide primers for PCR and programs are available, for example, over the Internet to facilitate this aspect of the invention (See, for example, http://bibiserv.techfak.uni-bielefeld.de/genefisher2/).
  • a nucleic acid marker may be linear or circular.
  • the nucleic acid marker will comprise a predetermined, linear nucleic acid sequence with binding sites for selected primers located at or near each end.
  • the primers will be internal rather than at an end, and a single primer may be used, e. g. for Rolling Circle Amplification.
  • Amplified DNA may be detected using any available method, including, but not limited to techniques such as labeled oligonucleotide probes, SYBR Green or ethidium bromide staining or electrochemical methods.
  • the DNA sequence located between the primer binding sites comprises a "characteristic identification sequence" capable of being detected during the PCR reaction.
  • Fluorescent signal generation may, for example, be sequence-specific (Molecular Beacons, Taq Man, Scorpions, fluorogenic primers, such as the LUX primers (Invitrogen (Carlsbad, CA.)) or mass dependent (SYBR Green, Ethidium Bromide).
  • sequence-specific primers such as the LUX primers (Invitrogen (Carlsbad, CA.)
  • mass dependent primers such as the LUX primers (Invitrogen (Carlsbad, CA.)
  • SYBR Green Ethidium Bromide
  • characteristic identification sequence refers to a nucleic acid sequence that can be specifically detected by virtue of hybridization to oligonucleotide or other nucleic acid that has been labeled with a detectable marker such as a radioisotope, a dye (such as a fluorescent dye), or other species that will be known in the art.
  • the characteristic identification sequence is capable of binding a "molecular beacon” probe.
  • molecular beacon refers to oligonucleotides such as those sold by Operon Technologies (Alameda, CA, USA) and Synthetic Genetics (San Diego, CA, USA). (See also, Tyagi and Kramer (1996), Nat.
  • the identification sequence is capable of binding a Scorpion.
  • ⁇ Scarpions are bifunctional molecules containing a PCR primer covalently linked to a probe.
  • the fluorophore in the probe interacts with a quencher which reduces fluorescence.
  • a quencher which reduces fluorescence.
  • Scorpions are sold by DxS Ltd. (Manchester, UK).
  • a signal can be generated using a variety of techniques and reagents.
  • polynucleotide and “nucleic acid (molecule)” are used interchangeably to refer to polymeric forms of nucleotides of any length, including naturally occurring and non-naturally occurring nucleic acids.
  • the polynucleotides may contain deoxyribonucleotides, ribonucleotides and/or their analogs.
  • Methods for selection and preparation of nucleic acids are diverse and well described in standard biomolecular protocols. A typical way would be preparative PCR and chromatographic purification starting from existing template DNAs or stepwise synthesis of artificial nucleic acids.
  • Nucleotides may have any three-dimensional structure, and may perform any function, known or unknown.
  • the term "nucleic acid molecule” includes single-, double-stranded and triple helical molecules.
  • Oligonucleotide refers to polynucleotides of between 3 and about 100, for example 3-50, 5-30, or 5-20 nucleotides of single- or double-stranded nucleic acid, typically DNA. Oligonucleotides are also known as oligomers or oligos and may be isolated from genes, or chemically synthesized by methods known in the art.
  • a “primer” refers to an oligonucleotide, usually single-stranded, that provides a 3'-hydroxyl end for the initiation of enzyme-mediated nucleic acid synthesis.
  • nucleic acids a gene or gene fragment, exons, introns, mRNA, tRNA, rRNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids, vectors, isolated DNA of any sequence, isolated RNA of any sequence, nucleic acid probes and primers.
  • a nucleic acid molecule may also comprise modified nucleic acid molecules, such as methylated nucleic acid molecules and nucleic acid molecule analogs.
  • Analogs of purines and pyrimidines are known in the art, and include, but are not limited to, aziridinylcytosine, 4-acetylcytosine, 5-fluorouracil, 5-bromouracil, 5- carboxymethylaminomethyl-2-thiouracil, 5-carboxymethyl-aminomethyluracil, inosine, N6- isopentenyladenine, 1 -methyladenine, 1 - methylpseudouracil, 1 -methylguanine, 1 - methylinosine, 2,2-dimethylguanine, 2-methyladenine, 2-methylguanine,3-methylcytosine,5- methylcytosine, pseudouracil, 5-pentylnyluracil and 2,6-diaminopurine.
  • a nucleic acid may also include a backbone modification, wherein the phosphodiester bonds are replaced with phosphorothioates or methylphosphonates.
  • linker or "linker molecule” refers to a molecule that either links the nucleic acid marker to the non-nucleic acid receptor and thus facilitates detection of an analyte specifically bound by the non-nucleic acid receptor via detecting the nucleic acid marker or that interconnects other linker molecules.
  • the linker molecules according to the present invention are chemically distinct from the non-nucleic acid receptor and the nucleic acid marker and are capable of binding the non-nucleic acid receptor and the nucleic acid marker and/or other, chemically different linker molecules.
  • the linker molecules of the invention are at least bivalent, preferably trivalent, tetravalent, pentavalent, hexavalent or multivalent.
  • the term "multivalent” relates to linker molecules that can bind more than 2, preferably more than 3 other molecules. The multiple molecules bound by the linker molecules may be the same or different.
  • a linker molecule may have binding sites for the nucleic acid marker, the non-nucleic acid receptor and/or another, chemically different linker molecule or, alternatively, 2, 3, 4 or more binding sites for one specific binding partner.
  • complex formation is achieved by coupling one or more binding partner(s) to other components of the detection complex, such as the nucleic acid marker, the non-nucleic acid receptor and another, chemically different linker molecule.
  • binding partner relates to a molecule which is specifically recognized and bound by a linker molecule.
  • the binding partner may thus be a small organic molecule, but can also be any other molecule, such as, for example, a peptide, polypeptide, protein, saccharide, polysaccharide or a lipid or an antigen or hapten.
  • a pair of linker molecule and binding partner are the streptavidin/biotin and avidin/biotin binding pairs. If the linker molecule is streptavid in/avid in and the binding partner is biotin, the biotin may be coupled to either one or all of the non- nucleic acid receptor, the nucleic acid marker and the second linker molecule to facilitate detection complex formation.
  • the binding of the linker molecule to its binding partner and/or the nucleic acid marker, the non-nucleic acid receptor and/or other, chemically distinct linker molecules is preferably non-covalent.
  • the linker molecules according to the invention may comprise one or more molecules selected from the group consisting of polysaccharides, organic polymers, polypeptides and nucleic acids distinct from the nucleic acid marker.
  • the linker molecule according to the invention comprises a nucleic acid distinct from the nucleic acid marker
  • the linker molecule may further comprise a polysaccharide, organic polymer or polypeptide chemically coupled to the nucleic acid part.
  • organic polymers refers to polymers of organic molecules, preferably including functional groups such as hydroxy, amino, imino, nitro, cyano, carboxy, carbonyl, carbamid, halo, acylhalo, aldehyde, epoxy, and/or thiol groups.
  • exemplary polymers are, for example, polyethyleneimines, poly(meth)acrylamides, polyamines, polyamidoamines, polyethyleneglycols, polyethylene, polypropylene, poly(meth)acrylates, polyurethanes, polystyrenes, and polyesters.
  • cationic polymers such as those having amino or imino groups, such as, for example, polyethyleneimines, poly(meth)acrylamides, polyamines, and polyamidoamines.
  • the organic polymers may be linear, branched or dendritic.
  • polysaccharide refers to molecules consisting of at least two monosaccharides linked by a glycosidic bond and includes disaccharides and oligosaccharides. Exemplary polysaccharides are starch, glycogen, dextran, cellulose and chitin.
  • the polysaccharides according to the invention may be linear, branched or dendritic polysaccharides.
  • contacting refer generally to providing access of one component, reagent, analyte or sample to another.
  • contacting can involve mixing a solution comprising a non-nucleic acid receptor with a sample.
  • the solution comprising one component, reagent, analyte or sample may also comprise another component or reagent, such as dimethyl sulfoxide (DMSO) or a detergent, which facilitates mixing, interaction, uptake, or other physical or chemical phenomenon advantageous to the contact between components, reagents, analytes and/or samples.
  • DMSO dimethyl sulfoxide
  • a detection is a detection consisting of a non-nucleic acid receptor and a nucleic acid marker, non-covalently linked to each other by means of a first linker molecule.
  • the detection comprises, consists essentially of or consists of a biotinylated DNA molecule coupled via a streptavidin molecule to an analyte- specific biotinylated antibody.
  • Such a detection may be an oligomeric detection, i.e. comprise more than one nucleic acid marker and/or more than one non-nucleic acid receptor and/or more than one first linker molecules.
  • detection complex refers to a complex of one or more non-nucleic acid receptors, one or more nucleic acid markers, one or more linker molecules of a first type, and one or more linker molecules of a second type.
  • the detection complexes according to the invention may comprise two or more detections as defined above and additionally one or more second linker molecule(s).
  • such a detection complex according to the invention comprises at least two non- nucleic acid receptors and at least two nucleic acid markers, non-covalently linked to each other by means of at least two first and at least two second linker molecules.
  • the detection comprises, consists essentially of or consists of at least one, for example 2 or more, biotinylated DNA molecule(s) coupled via at least one, preferably two or more, streptavidin molecule(s) and at least one, preferably to or more, biotinylated organic polymer or protein molecules, such as BSA, polyethyleneimines, poly(meth)acrylamides, polyamines, or polyamidoamines, to at least one, preferably two or more, analyte-specific biotinylated antibody/antibodies.
  • the detection complex comprises, consists essentially of or consists of one or more, preferably at least two (bis-)biotinylated DNA marker molecule(s) coupled via one or more, preferably at least two streptavidin molecule(s) and one or more, preferably at least two poly-biotinylated organic polymer(s) or protein(s)/polypeptide(s), such as BSA, polyethyleneimines, poly(meth)acrylamides, polyamines, or polyamidoamines, to one or more, preferably at least two analyte-specific poly- biotinylated antibodies.
  • poly-biotinylated refers to covalent modification with two or more biotin moieties.
  • Figure 1 shows the results of the investigation of 3 pan-specific ⁇ -amyloid antibodies (6E10, 13-28, 12F4) with different capture antibodies (clones 6-1 -6, 17-4-3, 24-2-3 (all three Probiodrug AG) and clone 2-48 (Synaptic Systems).
  • Figure 2 shows the recovery plot for high and low concentrations of standard ⁇ - ⁇ (3-42) peptide (SEQ ID NO: 30) mixtures used in the validation of the pGlu-A (3-42) peptide (SEQ ID NO: 30).
  • a highly sensitive method for the detection of an ⁇ target peptide in a biological sample comprising a capture reagent which is specific for said ⁇ target peptide; and an ⁇ target peptide detection complex, said method comprising the steps of:
  • the detection complex comprises an ⁇ target peptide specific antibody and a nucleic acid marker.
  • said ⁇ target peptide is a pGlu- ⁇ peptide.
  • said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding a pGlu- ⁇ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence; and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker.
  • the method according to the present invention comprises the steps of: a) contacting the biological sample with the detection complex under conditions allowing the binding of an ⁇ target peptide to said detection complex; and b) subsequently contacting said ⁇ target peptide, which is bound to the detection complex, with a capture reagent capable of binding an ⁇ target peptide under conditions allowing the binding of said capture reagent to said ⁇ target peptide.
  • the capture reagent is a capture antibody specific for a pGlu- ⁇ peptide.
  • a method for the detection of a pGlu- ⁇ peptide in a biological sample comprising the steps of:
  • said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding an ⁇ target peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker; under conditions allowing the binding of said detection complex to said ⁇ target peptide;
  • the biological samples concerned by the present invention usually comprise a mixture of different ⁇ peptides, fragments or functional derivatives thereof as well as different pGlu- ⁇ peptides, fragments or functional derivatives thereof.
  • the biological samples may comprise a mixture of the peptides according to SEQ ID NOs: 1 to 37.
  • both of the detection antibody and the capture antibody specifically bind to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide.
  • the advantage of this embodiment is that already in the step of (i) contacting a biological sample with at least one detection complex, wherein said detection complex comprises a detection antibody, only pGlu- ⁇ peptides, e.g. the pGlu- ⁇ peptides of at least one of SEQ ID NOs: 26-37 are bound by the detection antibody.
  • pGlu- ⁇ peptides e.g. the pGlu- ⁇ peptides of at least one of SEQ ID NOs: 26-37 are bound by the detection antibody.
  • This embodiment of the method of the invention is particularly suitable for the detection of pGlu- ⁇ peptides, which are comprised in ⁇ oligomers.
  • the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide and the detection antibody binds to another epitope sequence of an ⁇ peptide.
  • said detection complex comprises a detection antibody, all ⁇ peptides, pGlu- ⁇ peptides as well as fragments and functional variants thereof, which present in said biological sample, are bound by the detection antibody and are thus enriched in this method step.
  • the highly selective discrimination between ⁇ peptides and pGlu- ⁇ peptides is then performed in method step ii) of further contacting the ⁇ peptide, which is bound to the detection complex, with a capture antibody capable of binding a pGlu- ⁇ peptide under conditions allowing the binding of said capture antibody to said pGlu- ⁇ peptide.
  • This alternative embodiment is especially advantageous when the pGlu- ⁇ peptides are comprised not only in ⁇ oligomers, but when the pGlu- ⁇ peptides are comprised in the biological samples as free monomers or as monomers bound to proteins contained in the biological samples.
  • This alternative embodiment is particularly advantageous when only one pGlu- ⁇ monomer is bound to a protein contained in the biological samples.
  • the detection antibody and the capture antibody specifically bind to the same epitope such as to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide, monomeric pGlu- ⁇ peptide bound to the could possibly not detected by the capture antibody, because the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide is already masked or occupied by the detection antibody in the detection complex.
  • the detection antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide and the capture antibody binds to another epitope sequence of an ⁇ peptide.
  • This embodiment is as advantageous as the afore described embodiment for the detection of free or protein-bound monomeric pGlu- ⁇ peptide and pGlu- ⁇ containing oligomers.
  • the "other epitope sequence" of an ⁇ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu- ⁇ peptide may be a part of the amino acid sequence of a full-length ⁇ peptide, such as ⁇ (1 -38) of SEQ ID NO: 1 , ⁇ (1 -39) of SEQ ID NO: 2, ⁇ (1 -40) of SEQ ID NO: 3, ⁇ (1 -41 ) of SEQ ID NO: 4, ⁇ (1 -42) of SEQ ID NO: 5, and ⁇ (1 -43) of SEQ ID NO: 6.
  • the capture antibody and/or the detection antibody which do not bind to the pyroglutamate carrying amino terminus, may specifically detect the untruncated and/or unmodified N-terminus or C-terminus of an ⁇ peptide.
  • the other epitope sequence may be part of the amino acid sequence of one of SEQ ID NOs: 7 to 37.
  • the other epitope sequence of an ⁇ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu- ⁇ peptide is comprised in the core amyloid ⁇ sequence of ⁇ (1 1 -38) of SEQ ID NO: 19 in the case that pGlu- ⁇ peptides starting with the N-terminal pGlu residue at position 3, most preferably the pGlu- ⁇ peptides of SEQ ID NOs: 26-31 shall be detected and/or quantified.
  • the other epitope sequence of an ⁇ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu- ⁇ peptide is comprised in the core amyloid ⁇ sequence of ⁇ (15-38) of SEQ ID NO: 25 in the case that pGlu- ⁇ peptides starting with the N-terminal pGlu residue at position 1 1 , most preferably the pGlu- ⁇ peptides of SEQ ID NOs: 32-37 shall be detected and/or quantified.
  • the other epitope sequence consists of the entire amino acid sequence of an ⁇ peptide of one of SEQ ID NOs: 1 to 25. More suitably, other epitope sequence consists of 30, 25, 20 or 15 amino acids of an ⁇ peptide of one of SEQ ID NOs: 1 to 25. Most preferably, the other epitope sequence consists of 10, 9, 8, 7, 6, 5, 4 or 3 amino acids of an ⁇ peptide of one of SEQ ID NOs: 1 to 25.
  • the detection complex is provided in a matrix similar to the biological sample.
  • the detection complex comprised in such a matrix similar to the biological sample is added directly to the biological sample.
  • best results can be obtained when the detection complex is provided in a matrix similar to the biological sample, is added directly to the biological in a ratio ⁇ 1 +1 .
  • the method of the present invention is based on a new and surprising strategy in the assay protocol, which comprises a combined overnight incubation of the biological sample and the addition of the detection complex, which is contained in a matrix similar to the biological sample, directly to the biological sample in a ratio of 1 +0.03.
  • This assay protocol is quite unexpected and unconventional compared to methods used in the prior art, where a typical sample dilution is 1 +1 to 1 +9 and higher. Only this incubation strategy enabled the intended highly sensitive detection of the ⁇ target peptide.
  • a further increase in the sensitivity and reliability of the method of the present invention is achieved, when a mixture of different pGlu- ⁇ peptides is applied to human CSF or artificial human CSF as a reference substance for quantification.
  • a 1 +1 mixture of pGlu-A (x-40) and pGlu-A (x-42) is applied to human CSF or artificial human CSF as a reference substance for quantification, wherein x is an integer selected from 3 and 1 1 .
  • a 1 +1 mixture of pGlu-A (3-40) and pGlu-A (3-42) is applied human CSF or artificial human CSF as a reference substance for quantification, when the ⁇ target peptide is selected from SEQ ID NOs: 1 to 25.
  • a 1 +1 mixture of pGlu- ⁇ 1 -40) and pGlu-A (1 1 -42) is applied human CSF or artificial human CSF as a reference substance for quantification, when the ⁇ target peptide is selected from SEQ ID NOs: 32-37.
  • a mixture of two ⁇ target peptides is selected from SEQ ID NOs: 32-37.
  • Suitable examples for detection and/or capture antibodies, which do not bind to the pyroglutamate carrying amino terminus of pGlu- ⁇ peptides are:
  • the pGlu- ⁇ peptide which is preferably detected by the method of the invention, is at least one pGlu- ⁇ peptide selected from the group consisting of SEQ ID NOs: 26 to 37.
  • said detection antibody and/or said capture antibody is a monoclonal antibody, more preferably a humanized monoclonal antibody.
  • a detection antibody and/or a capture antibody which is a diabody or a single chain antibody which retains the high affinity.
  • the capture and/or the detection antibody which specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptides of SEQ ID NOs: 26-31 , is selected from the group consisting of
  • the capture and/or the detection antibody specifically binds to the epitope sequence pGlu-FRHDSGC, SEQ ID NO: 38.
  • the detection and/or the capture antibody is produced by a hybridoma cell line selected from the group consisting of: ⁇ 5-5-6 (Deposit No. DSM ACC 2923),
  • variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 40 or the amino acid sequence of SEQ ID NO: 41
  • variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 42, or the amino acid sequence of SEQ ID NO: 43.
  • variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 44 or the amino acid sequence of SEQ ID NO: 45
  • variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 46, or the amino acid sequence of SEQ ID NO: 47.
  • variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 48 or the amino acid sequence of SEQ ID NO: 49
  • variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 50, or the amino acid sequence of SEQ ID NO: 51 .
  • variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 52 or the amino acid sequence of SEQ ID NO: 53
  • variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 54, or the amino acid sequence of SEQ ID NO: 55.
  • the capture and/or the detection antibody which specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptides of SEQ ID NOs: 32 to 37, is selected from the group consisting of
  • the capture and/or the detection antibody specifically binds to the epitope sequence pGlu-VHH, SEQ ID NO: 39. More preferably, said detection antibody and/or said capture antibody is a monoclonal antibody produced by hybridoma cell line ⁇ 13-1 1 -6 (Deposit No. DSM ACC 3100), which is disclosed in WO 2012/123562.
  • variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 56 or the amino acid sequence of SEQ ID NO: 57
  • variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 58, or the amino acid sequence of SEQ ID NO: 59.
  • the capture antibody is immobilized on a solid support, and thereafter the detection complex comprising the detection antibody and the analyte binds to the capture antibody, thus forming an insoluble complex.
  • General methods for preparing a detection complex which is used in the method of the invention, has been described in DE 199 41 756 A1 and EP 2 189 539 A1 , the disclosure of which is incorporated herein in their entirety.
  • detection complexes that consist of, consist essentially of or comprise one or more non-nucleic acid receptors (e.g.
  • an antibody such as a detection antibody
  • one or more nucleic acid markers one or more first linker molecules adapted to bind the non-nucleic acid receptor and the nucleic acid marker
  • one or more second linker molecules adapted to bind the first linker molecule the performance, in particular the assay sensitivity and the signal-to- background-ratio, of an Immuno-PCR (IPCR) reaction can be significantly improved.
  • a method for the detection of a pGlu- ⁇ peptide in a biological sample comprising the steps of:
  • contacting a biological sample with at least one detection complex wherein said detection complex consist of, consist essentially of or comprises a detection antibody capable of binding an ⁇ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker; and one or more second linker molecules adapted to bind the first linker molecule under conditions allowing the binding of said detection complex to the ⁇ peptide; ii. further contacting the ⁇ peptide, which is bound to the detection complex, with a capture antibody capable of binding an ⁇ peptide under conditions allowing the binding of said capture antibody to said ⁇ peptide; and
  • the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide.
  • the invention relates to detection complexes comprising one or more detection antibody molecules, one or more nucleic acid markers, one or more first linker molecules adapted to bind the non-nucleic acid receptor and the nucleic acid marker, and one or more second linker molecules adapted to bind the first linker molecule.
  • the detection complexes comprise a plurality of detection antibody molecules, nucleic acid markers, first linker molecules and second linker molecules. It is desirable to include several detection antibodies with specific binding affinity for a certain ⁇ peptide or pGlu- ⁇ peptide in the detection complexes according to the invention in order to enhance the affinity for the analyte of choice by means of increased avidity. In turn, it is also desirable to include several nucleic acid markers in the detection complexes, because thus the positive signal, indicating the presence of the analyte in a sample, is enhanced and the signal- to-background ratio improved.
  • the first and second linker molecules serve the purpose to form supramolecular aggregates of the detection antibodies and the nucleic acid markers and thus increase the sensitivity of the complexes as detection reagents in IPCR assays.
  • the first linker molecules are adapted to bind the detection antibodies, the nucleic acid markers and the second linker molecules.
  • the supramolecular detection complexes according to the present invention may include 2-50, preferably 5-50 molecules of each the detection antibodies, the nucleic acid markers, the first linker molecules and the second linker molecules.
  • the complexes include at least 2, preferably 3 or more detection antibody molecules and/or nucleic acid markers.
  • the invented detection complexes include about 10-40 nucleic acid marker and first linker molecules, about 5-15 detection antibody molecules and about 5-10 second linker molecules.
  • the detection antibody may be an antibody fragment or functional variant of a detection antibody or detection antibody fragment that retains the ability to specifically bind an ⁇ peptide or pGlu- ⁇ peptide.
  • the detection antibody may be a monoclonal or polyclonal antibody and the antibody fragment may be, for example, a Fab or F(ab')2 fragment, a single chain variable fragment (scFv), an Fv diabody or a linear antibody.
  • the detection antibodies, fragments or functional variants thereof may be biotinylated and thus include one or more biotin or biotin analog moieties.
  • the nucleic acid marker including a predetermined nucleotide sequence may be any nucleic acid, such as, for example, double- or single-stranded DNA, double- or single stranded RNA, or double-stranded hybrids of DNA and RNA.
  • the nucleic acid marker may contain nucleotide analogs, such as those, in which the naturally occurring bases and sugars are replaced by base analogs or sugar analogs or in which the phosphate backbone is substituted by other suitable groups. Suitable modifications have been mentioned above. All afore-mentioned nucleic acid marker molecules may be biotinylated and thus include one or more biotin or biotin analog moieties. One particular example are mono- or bis-biotinylated DNA molecules.
  • the detection complexes are formed by non-covalent interactions between the first linker molecules and the detection antibody and/or the nucleic acid marker.
  • the binding of the first linker molecule to the second linker molecule may also be non-covalent.
  • the binding of the first linker molecule to the detection antibody, the nucleic acid marker and/or the second linker molecule may be facilitated by coupling each the non-nucleic acid receptor, the nucleic acid marker and/or the second linker molecule to one or more, for example 2, 3, 4, 5 or more binding partners of the first linker molecule.
  • These binding partners may be the same or different for the detection antibody, the nucleic acid marker and the second linker molecule.
  • these binding partners of the first linker molecule are covalently coupled to the detection antibody, the nucleic acid marker and/or the second linker molecule.
  • the binding partner of the first linker molecule may be a ligand of the first linker molecule. It is preferred that the first linker molecule is bivalent, trivalent, tetravalent or multivalent for the binding to the binding partner. In one embodiment, the first linker molecule specifically recognizes and binds its binding partner with a high affinity.
  • the first linker molecule may be avidin or streptavidin or a biotin-binding fragment or mutant thereof.
  • the binding partner of the first linker molecule is biotin or a biotin analog.
  • the biotin analogs of the present invention preferably retain the ability to specifically bind to avidin, streptavidin or a biotin-binding fragment or mutant thereof.
  • the binding of the first linker molecule to the detection antibody, the nucleic acid marker and/or the second linker molecule may be facilitated by coupling the detection antibody, the nucleic acid marker and/or the second linker molecule to biotin or a biotin analog. This coupling may be covalent and either of the detection antibody, the nucleic acid marker and/or the second linker may be coupled to at least 2 biotin or biotin analog molecules.
  • the first linker molecule may be a fusion protein or an at least bivalent antibody or antibody-like molecule adapted to simultaneously bind at least two of the detection antibodies, the nucleic acid marker and the second linker molecule.
  • the second linker molecules may be selected from the group consisting of nucleic acids distinct from the nucleic acid marker, organic polymers, polypeptides and polysaccharides.
  • the second linker molecules comprise at least two, three or four different molecules selected from the group consisting of nucleic acids distinct from the nucleic acid marker, organic polymers, proteins and polysaccharides.
  • the second linker molecules consist of, consist essentially of or include organic polymer molecules, these may be selected from the group consisting of cationic polymers, such as linear, branched or dendritic polyethyleneimines, polyacrylamides, polyamines, and polyamidoamines according to one specific embodiment of the present invention.
  • cationic polymers such as linear, branched or dendritic polyethyleneimines, polyacrylamides, polyamines, and polyamidoamines according to one specific embodiment of the present invention.
  • the second linker molecules consist of, consist essentially of or include protein or polypeptide molecules, these may be selected from the group consisting of serum albumines and immunoglobulins or fragments thereof.
  • the second linker molecule may be BSA.
  • the second linker molecules may be homo-polymers of cationic amino acids, such as poly-lysine, poly-histidine or poly-arginine.
  • the second linker molecules consist of, consist essentially of or include polysaccharides selected from the group consisting of linear, cyclic or branched dextrans.
  • the second linker molecules may also consist of, consist essentially of or include nucleic acid molecules distinct from the nucleic acid marker.
  • the nucleic acid molecules may be nucleic acid oligomers, for example, oligonucleotides or nucleic acid polymers, such as polynucleotides.
  • Exemplary nucleic acid oligomers that may be used as second linker molecules consist of two complementary nucleic acid strands, wherein each of these strands is independently adapted to bind to a first linker molecule.
  • this binding to a first linker molecule is facilitated by covalently coupling each single strand of the nucleic acid oligomer to one first linker molecule, with the result that each of these two strands is independently coupled to a first linker molecule by a covalent bond.
  • Another alternative embodiment may be a polynucleotide adapted to bind one or more first linker molecules.
  • the second linker molecules may also be a heterogeneous mixture of the above specified molecules.
  • the second linker molecules thus include two or more different molecules selected from the group consisting of linear, branched or dendritic polyethyleneimines, polyacrylamides, polyamines, polyamidoamines, homo-polymers of cationic amino acids, such as poly-lysine, serum albumines, immunoglobulins or fragments thereof, linear, cyclic or branched dextrans, poly- and oligonucleotides.
  • the second linker molecules include nucleic acid oligomers consisting of two complementary nucleic acid strands, wherein each of these strands is independently adapted to bind to a first linker molecule, optionally be forming a covalent bond, and organic polymers, such as polyethyleneimines, polypeptides, such as albumines or immunoglobulins, polysaccharides and/or polynucleotides distinct from the nucleic acid oligomers and the nucleic acid marker. All afore-mentioned second linker molecules may be coupled to one or more biotin or biotin analog molecules.
  • second linker molecules according to the invention are polybiotinylated BSA, polybiotinylated polyethyleneimine, polybiotinylated poly(meth)acrylamide, polybiotinylated polyamine, or polybiotinylated polyamidoamine.
  • the detection complexes of the invention may further include one or more modulators adapted to bind to the first linker molecules. These modulators are used to saturate non-occupied binding sites of the first linker molecule for the detection antibody, the nucleic acid marker, the second linker molecule and/or a binding partner of the first linker molecule.
  • the modulator is preferably added after formation of a detection complex from the detection antibody, the nucleic acid marker, the first and the second linker molecule.
  • the modulators may be positively charged and may be selected from the group consisting of amino-biotin, diamino-biotin and amino-substituted biotin analogs.
  • the present invention relates to methods for the preparation of the above detection complexes.
  • a method for the preparation of a detection complex according to the invention includes the steps of:
  • step (b) contacting the complex of step (a) with one or more detection antibodies to form a complex of one or more detection antibodies, one or more nucleic acid markers and one or more first linker molecules;
  • step (c) contacting the complex of step (b) with one or more second linker molecules adapted to bind the first linker molecules to form a complex of one or more detection antibodies, one or more nucleic acid markers, one or more first linker molecules and one or more second linker molecules.
  • This method may optionally further include the step of:
  • step (d) contacting the complex of step (c) with one or more modulators adapted to bind to the first linker molecules to saturate non-occupied binding sites of the first linker molecule for the detection antibody, the nucleic acid marker and the second linker molecule to form a complex of one or more detection antibodies, one or more nucleic acid markers, one or more first linker molecules, one or more second linker molecules and one or more modulators.
  • the invention encompasses a method for the preparation of a detection complex including:
  • nucleic acid markers including a predetermined nucleotide sequence
  • nucleic acid oligomers adapted to bind the first linker molecules, wherein the one or more nucleic acid oligomers comprise two complementary nucleic acid strands distinct from the nucleic acid marker;
  • step (b) contacting the nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) with one or more first linker molecules to form a second detection of one or more first linker molecules and one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a);
  • step (c) contacting the detection of step (a) with one or more nucleic acid markers to form a first complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers and one or more nucleic acid markers;
  • step (d) contacting the detection of step (b) with one or more detection antibodies to form a second complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) and (c) and one or more detection antibodies;
  • step (e) contacting the first complex of step (c) with one or more organic polymers, polynucleotides, polypeptides or polysaccharides, to form a third complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers, one or more nucleic acid markers and one or more organic polymers, polynucleotides, polypeptides or polysaccharides; and
  • step (f) contacting the second complex of step (d) with the third complex of step (e) to form a complex detection of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers, one or more nucleic acid markers, one or more organic polymers, polynucleotides, polypeptides or polysaccharides, one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) and (c) and one or more detection antibodies.
  • this method may further include the step of contacting the complexes of steps (d) and (e) with one or more modulators adapted to bind to the first linker molecule before step (f).
  • the detection antibody, the nucleic acid marker, the first linker molecule, the second linker molecule and the modulator may be as defined above.
  • the binding of the detection antibody, the nucleic acid marker and the second linker molecule to the first linker molecule may be facilitated by one or more binding partner(s) of the first linker molecule coupled to the detection antibody, the nucleic acid marker and the second linker molecule.
  • these binding partners are biotin and/or a biotin analog and the first linker molecule is streptavidin, avidin or a biotin-binding fragment thereof.
  • the detection complexes obtainable by the invented methods.
  • the invention is also directed to the use of the detection complex according to the invention in an immunoassay for the detection or the determination of the amount of a pGlu- ⁇ peptide.
  • Said pGlu- ⁇ peptide may be as defined above and is specifically recognized and bound by the detection antibody.
  • the immunoassay may include a nucleic acid amplification reaction to amplify the nucleic acid marker.
  • the amplification reaction is preferably a polymerase chain reaction (PCR), more preferably a real-time PCR reaction.
  • the invention features a method for detecting a pGlu- ⁇ peptide in a sample, wherein the method includes the steps of:
  • a detection complex comprising one or more detection antibodies capable of specifically binding said pGlu- ⁇ peptide with said sample to form a complex of said analyte and said detection complex;
  • the detecting step (b) may comprise amplifying the one or more nucleic acid markers in a PCR reaction, preferably a real time PCR reaction.
  • the detection of the pGlu- ⁇ peptide includes the determination of the amount of the pGlu- ⁇ peptide, that is a quantitative determination of the pGlu- ⁇ peptide.
  • Detection and, in a specific embodiment, also quantitation of the pGlu- ⁇ peptide may be achieved by detection and, optionally, quantitation of the number of amplicons generated in the PCR reaction using the nucleic acid marker as a template. Detection and, optionally quantitation may be achieved by using nucleic acid probes labeled with a detectable label or suitable dyes. In one embodiment of the invention, the nucleic acid marker is detected by real time PCR, carried out in a commercially available instrument.
  • Real-time PCR amplification is performed in the presence of a fluorescent-labelled probe which specifically binds to the amplified PCR product, for example a dual labelled primer including a fluorescent moiety quenched by another label which is in spatial proximity to the fluorescent label as long as the primer is not incorporated in an amplification product and separated from each other due to elongation of the primer during amplification.
  • a fluorescent-labelled probe which specifically binds to the amplified PCR product
  • a dual labelled primer including a fluorescent moiety quenched by another label which is in spatial proximity to the fluorescent label as long as the primer is not incorporated in an amplification product and separated from each other due to elongation of the primer during amplification.
  • a non-primer detectable probe which specifically binds the PCR amplification product is used.
  • the probe may include a covalently bonded reporter dye at the 5'-end and a downstream quencher dye at the 3'-end, which allows fluorescent resonance energy transfer (FRET).
  • FRET fluorescent resonance energy transfer
  • Detection of the amplified PCR product may be carried out after each amplification cycle, as the amount of PCR product is at every stage of the amplification reaction proportional to the initial number of template copies.
  • the number of template copies can be calculated by means of the detected fluorescence of the reporter dye. In an intact probe the fluorescence is quenched due to the close proximity of the reporter dye and quencher dye.
  • the nuclease activity of the DNA polymerase cleaves the probe in the 5'-3' direction and thus separates the reporter dye from the quencher dye. Because reporter and quencher dye are then no longer in close proximity to each other, the fluorescence of the reporter dye is increased.
  • the reporter dye and quencher dye may be located on two separate probes which hybridize to the amplified PCR detector molecule in adjacent locations sufficiently close to allow the quencher dye to quench the fluorescence signal of the reporter dye ( Rasmussen et al. (1998), "Quantitative PCR by continuous fluorescence monitoring of a double strand DNA specific binding dye” Biochemica 2:8-15 ).
  • the 5'-3' nuclease activity of the polymerase cleaves the one dye from me probe containing it, separating the reporter dye from the quencher dye located on the adjacent probe preventing quenching of the reporter dye.
  • detection of the PCR product is by measurement of the increase in fluorescence of the reporter dye.
  • PCR detection strategies may be used, including known techniques such as intercalating dyes (ethidium bromide) and other double stranded DNA binding dyes used for detection (e.g. SYBR green, FMC Bioproducts), dual fluorescent probes ( Wittwer et al. (1977) BioTechniques 22: 130-138 and Wittwer et al. (1997) BioTechniques 22: 176-181 ) and panhandle fluorescent probes (i.e. molecular beacons; Tyagi and Kramer (1996) Nature Biotechnology 14: 303-308 ).
  • intercalating dyes ethidium bromide
  • other double stranded DNA binding dyes used for detection e.g. SYBR green, FMC Bioproducts
  • dual fluorescent probes Wittwer et al. (1977) BioTechniques 22: 130-138 and Wittwer et al. (1997) BioTechniques 22: 176-181
  • panhandle fluorescent probes i.e. molecular beacons; Tyagi and Kramer (1996) Nature
  • intercalating dyes and double stranded DNA binding dyes permit quantitation of PCR product accumulation in real time applications, they suffer from a lack of specificity, detecting primer dimer and any nonspecific amplification product. Careful sample preparation and handling, as well as careful primer design, using known techniques are necessary to minimize the presence of matrix and contaminant DNA and to prevent primer dimer formation. Appropriate PCR instrument analysis software and melting temperature analysis permit a means to extract specificity ( Ririe, K., et al. (1977) Anal. Biochem. 245: 154-160 ) and may be used with these embodiments.
  • the Scorpions reaction is used as a real time PCR detection method.
  • Scorpions are bi-functional molecules containing a PCR primer covalently linked to a probe.
  • the fluorophore in the probe interacts with a quencher which reduces fluorescence.
  • the primer binds to the template and is elongated by the polymerase. Once the elongation reaction is completed and primer and template are separated in the denaturation step, the elongated primer sequence can interact intramolecularly with the probe sequence in the next annealing step.
  • the binding of the probe to the elongated primer sequence prevents interaction of the probe-bound fluorophore with the quencher, which leads to an increase in light output from the reaction tube.
  • Scorpions there are two formats for Scorpions, the bimolecular Scorpion format and the unimolecular format.
  • the quencher is bound to a separate nucleic acid molecule which is complementary to the probe sequence, whereas in the unimolecular format both, fluorophore and quencher, are attached to the same molecule, and an integral stem loop sequence is used to bring the quencher close to the fluorophore.
  • Suitable fluorescent reporter dyes are also known and commercially available, and include, without limitation 6-carboxy- fluorescein (FAM), tetrachloro-6-carboxy-fluorescein (TET), 2,7-dimethoxy-4,5-dichloro-6- carboxy-fluorescein (JOE) and hexachloro-6-carboxy-fluorescein (HEX).
  • FAM 6-carboxy- fluorescein
  • TET tetrachloro-6-carboxy-fluorescein
  • HEX hexachloro-6-carboxy-fluorescein
  • TAMRA 6-carboxy-tetramethylrhodamine
  • the invention relates to a kit i.e., a packaged combination of reagents in predetermined amounts with instructions for performing the detection method or the diagnostic method of the invention.
  • a kit comprises one or more detection complexes according to the invention or manufactured according to the methods of the invention.
  • Such a kit may additionally contain further components.
  • Exemplary components that may be additionally comprised in the kits of the present invention include, but are not limited to stabilizers, buffers (e.g. a block buffer or lysis buffer), dyes, oligonucleotide primers or probes, which may be optionally labelled with a detectable label, etc.
  • the components of the detection complexes according to the invention may be as defined above.
  • antibodies used in the methods of the present invention can also be provided in the kit.
  • the relative amounts of the various reagents may be varied widely to provide for concentrations in solution of the reagents which substantially optimize the sensitivity of the assay.
  • the reagents may be provided as dry powders, usually lyophilized, including excipients which on dissolution will provide a reagent solution having the appropriate concentration.
  • kits for diagnosing a neurodegenerative disorder such as Alzheimer's disease which comprises detection complexes according to the invention or manufactured according to the methods of the invention, at least one capture antibody and instructions for use.
  • the kit additionally comprises at least one capture antibody that specifically binds to the pyroglutamate carrying amino terminus of said pGlu- ⁇ peptide.
  • the invention is also directed to the use of one or more organic polymer, polypeptide, polysaccharide and/or oligo- or polynucleotide molecules, all of which may be optionally biotinylated, as additional linker molecules in a detection comprising one or more non-nucleic acid receptors, one or more nucleic acid markers and one or more first linker molecules to form a detection complex comprising one or more non-nucleic acid receptors, one or more nucleic acid markers, one or more first linker molecules and one or more organic polymer, polypeptide, polysaccharide and/or oligo- or polynucleotide molecules.
  • the biological sample may be any sample, for example from a human.
  • the sample is a tissue sample, a body fluid sample or a cell sample.
  • the biological sample is selected from the group consisting of blood, serum, urine, cerebrospinal fluid (CSF), plasma, lymph, saliva, sweat, pleural fluid, synovial fluid, tear fluid, bile and pancreas secretion.
  • the biological sample is plasma.
  • the biological sample is CSF.
  • the biological sample can be obtained from a patient in a manner well-known to a person skilled in the art.
  • a blood sample can be obtained from a subject and the blood sample can be separated into serum and plasma by conventional methods.
  • the subject, from which the biological sample is obtained is preferably a subject suspected of being afflicted with Alzheimer's disease, at risk of developing Alzheimer's disease and/or being at risk of or having any other kind of dementia.
  • the sample is obtained from a subject suspected of having Mild Cognitive Impairment (MCI) and/or being in the early stages of Alzheimer's disease.
  • MCI Mild Cognitive Impairment
  • the invention further relates to the use of the method for the detection of a pGlu- ⁇ peptide according to the present invention in a method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment.
  • the invention provides a method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment, which comprises determining the level of a pGlu- ⁇ peptide in a biological sample from a subject, comprising the following steps:
  • determining a first level of a pGlu- ⁇ peptide in a biological sample from a subject suspected to be afflicted with said neurodegenerative disease with a method for the detection of a pGlu- ⁇ peptide according to the present invention; ii. comparing the first level of the pGlu-A ⁇ peptide with a second level of said pGlu- ⁇ peptide in a healthy control subject; and
  • the invention provides a method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprising determining the level of a pGlu- ⁇ peptide in a biological sample from a subject with a method for the detection of a pGlu- ⁇ peptide according to the present invention.
  • said method of diagnosing or said method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment comprises the determination of the level of a pGlu- ⁇ peptide in a biological sample taken on two or more occasions from a subject.
  • the biological sample will be taken on two or more occasions from a test subject.
  • the method additionally comprises comparing the level of the pGlu- ⁇ peptides present in biological samples taken on two or more occasions from a test subject.
  • the method additionally comprises comparing the level of the pGlu- ⁇ peptides present in a test sample with the amount present in one or more sample(s) taken from said subject prior to commencement of therapy, and/or one or more samples taken from said subject at an earlier stage of therapy.
  • the method additionally comprises comparing the level of the pGlu- ⁇ peptides with one or more controls.
  • said method of diagnosing or said method of monitoring the efficacy of a therapy in a subject further comprises a step, wherein the state of the neurodegenerative disease of the subjects that are donors of the biological samples is characterized in one or more psychometric tests.
  • Suitable psychometric tests for characterization of the state of the neurodegenerative disease of a subject are selected from the DemTect Test, Mini-Mental- State Test, Clock-Drawing Test, ADAS-Cog, captivating Test, CANTAB, Cognistat, NPI, BEHAVE-AD, CERAD, CSDD, GDS and The 7 Minute Screen.
  • Suitable treatments of neurodegenerative diseases are treatments that inhibit the formation of the pGlu-residue at the N-terminus of N- terminally truncated ⁇ peptides.
  • Particularly suitable treatments in this regard are inhibitors of the enzyme glutaminyl cyclase.
  • Glutaminyl cyclase has been shown to catalyse the formation of pGlu at the N-terminus of peptides not only from a glutamine residue, but also from a glutamate residue. Accordingly, glutminyl cyclase is responsible for the posttranslational formation of glutamate residues at position 3 or 1 1 of ⁇ peptide to pGlu.
  • Suitable glutaminyl cyclase inhibitors for the treatment of neurodegenerative diseases are for example disclosed in WO 2005/075436, WO 2008/055945, WO 2008/055947, WO 2008/055950, WO2008/065141 , WO 2008/1 10523, WO 2008/128981 , WO 2008/128982, WO 2008/128983, WO 2008/128984, WO 2008/128985, WO 2008/128986, WO 2008/128987, WO 2010/026212, WO 2010/012828, WO 201 1/107530, WO 201 1/1 10613, WO 201 1/131748, WO 2012/123563 and WO 2014/140279.
  • Suitable treatments of neurodegenerative diseases are antibodies, preferably beta-amyloid antibodies, more preferably antibodies that specifically recognize pGlu- ⁇ peptides.
  • Suitable pGlu- ⁇ antibodies are for example disclosed in WO 2010/009987, WO 2012/123562, US 7 122 374 81 , WO 201 1 /151076, WO 2012/021469; WO 2012/136552 and WO 2010/129276.
  • the invention provides a method for monitoring the efficacy of inhibitors of glutaminyl cyclase and/or beta-amyloid antibodies, most preferably antibodies that specifically recognize pGlu- ⁇ peptides, in the treatment of neurodegenerative diseases, such as Alzheimer's diseases and/or Mild Cognitive Impairment.
  • the present method of diagnosis has several advantages over the methods known in the art, i.e. the method of the present invention can be used to detect Alzheimer's disease at an early stage and to differentiate between Alzheimer's disease and other types of dementia in early stages of disease development and progression.
  • One possible early stage is Mild Cognitive Impairment (MCI).
  • the methods provided by the present invention are suitable for a differential diagnosis of Alzheimer's disease.
  • the present invention provides a diagnostic method, wherein the level of pGlu- ⁇ peptides can be detected in biological samples obtained from any of the above described subjects in a highly sensitive and reproducible manner.
  • the high sensitivity of the methods of the present invention is achieved by using the detection complex of the invention, the antibodies that are highly specific for the detection of pGlu- ⁇ peptides; and the immune-PCR method for the detection and/or quantification of pGlu- ⁇ peptides.
  • the method of the present invention it is for the first time possible to detect trace amounts or very low amounts of pGlu- ⁇ peptides, i.e.
  • the invention provides a method for the detection of pGlu- ⁇ peptides, which is highly sensitive, independently from whether the pGlu- ⁇ peptides are present as monomers, in oligomers or bound to proteins in the sample. It is especially possible to detect the occurrence of pGlu- ⁇ peptides in a biological sample already closely to or even prior to the onset of Alzheimer's diseases.
  • the method of the present invention makes it possible for the first time to detect and quantify pGlu- ⁇ peptides, in particular those of SEQ ID NOs: 26-37, preferably of SEQ ID NOs: 26-31 and even preferably of SEQ ID NOs: 32-37; or fragments or functional variants thereof, in a highly sensitive manner.
  • the present invention provides pGlu- ⁇ peptides as a biomarker biological fluids, such as plasma or CSF, which is suitable for a differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease.
  • the invention is directed to the use of the method of determining pGlu- ⁇ peptides for the diagnosis of Alzheimer's disease, such as the differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease.
  • the early stage of Alzheimer's disease is Mild Cognitive impairment.
  • the invention is directed to the use of the pGlu- ⁇ peptides for the diagnosis of Alzheimer's diseases, such as the differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease.
  • the early stage of Alzheimer's disease is Mild Cognitive impairment.
  • the pGlu- ⁇ peptides which shall be used for diagnosis of Alzheimer's disease, are detected and quantified with a method according to the present invention.
  • the monoclonal antibody expressing hybridoma cell line 13-1 1 -6 has been deposited in accordance with the Budapest Treaty and is available at the Deutsche Sammlung fur Mikroorganismen und Zellkulturen (German Collection of Microorganisms and Cell Cultures) GmbH, DSMZ, Inhoffenstrasse 7B, 38124 Braunschweig, Germany, with a deposit date of December 14, 2010, and with the deposit number:
  • Microplate modules (Chimera biotec C-001 ) were coated with 30 ⁇ /well capture antibody (clone 6, 17 or 24, probiodrug) at a concentration of 5 ⁇ g ml in coating buffer (Chimera biotec C-010). Coating was carried out overnight at 4°C. Subsequently, coated modules were washed with wash buffer A (Chimera Biotec, C-01 1 ). All washing steps were carried out according to wash buffer manufacturer's instructions.
  • the washed modules were incubated with 30 ⁇ /well sample material, consisting of artificial CSF (Chimera biotec,) spiked with pGlu- ⁇ (3-40) or (3-42) (Probiodrug), at different concentration levels and diluted 1 +9 in sample dilution buffer (SDB-9100, Chimera Biotec). Incubation was carried out for 45 min at room temperature, followed by a washing step with wash buffer B (Chimera Biotec, C-012). Subsequently, wells were incubated with 30 ⁇ / ⁇ biotinylated detection antibody (clone 17 or clone 24, Probiodrug) in a concentration of 0.2 ⁇ g ml in antibody dilution buffer (SDB-6000, Chimera Biotec).
  • Example 2 Application of an Antibody - DNA detection complex for the detection of pGlu- ⁇ peptides in a biological sample
  • Microplate modules (Chimera biotec C-001 ) were coated with 30 ⁇ /well capture antibody (clone 24, Probiodrug) at a concentration of 5 ⁇ g ml in coating buffer (Chimera biotec C-010). Coating was carried out overnight at 4°C. Subsequently, coated modules were washed with wash buffer A (Chimera Biotec, C-01 1 ). All washing steps were carried out according to wash buffer manufacturer's instructions. The washed modules were incubated with 30 ⁇ /well sample material, consisting of artificial CSF (Chimera biotec) spiked with pGlu- ⁇ (1 +1 mixture of 40 & 42, Probiodrug) at different concentration levels as reference standards and individual CSF for analysis.
  • the sample material was additionally mixed 1 +0.03 (one part sample + 0.03 part reagent) with an antibody-DNA detection complex (CH I-pGlu, Chimera Biotec,, synthesized from clone 17-24, Probiodrug) at sub ⁇ g ml in artificial CSF (Chimera biotec).
  • an antibody-DNA detection complex CH I-pGlu, Chimera Biotec,, synthesized from clone 17-24, Probiodrug
  • the microplate is sealed with PCR-foil (Chimera biotec, C-069) and DNA-amplification & data read-out is carried out according to manufacturer's instructions by application of an Imperacer ® workstation (Chimera Biotec 25- 002). Results:
  • pan-specific antibodies 6E10, BAM90.1 (epitope aa 13-28) or 12F4(specific for ⁇ 42 C-terminus) were used as detection antibodies in the detection antibody-DNA- conjugate (ADC); and b) ⁇ 3- ⁇ peptide specific monoclonal antibody clone 6-1 -6, clone 17-4-3 or clone 24- 2-3 were used as capture antibody for coating the microplate modules.
  • the antibody-DNA-STV conjugate was purified by FPLC (Superdex 200) and the 1 ml product fraction was mixed with 2 ml NaCI solution (300 mM) for a final solution of 10.5 pmol/ml detection antibody-DNA-conjugate ("ADC") (cf. Niemeyer et al., (1999). Nucleic Acids Res 27(23): 4553-61 ).
  • ADC detection antibody-DNA-conjugate
  • Standard curve and quality controls (QCs) samples with concentrations of pGlu3-A (40/42) of SEQ ID NOs: 28 and 30 were prepared and evaluated according to Table 5.
  • the "low series” contained pGlu3-A (40/42) SEQ ID NOs: 28 and 30 in the range from 4.2 fg/ml up to 9 pg/ml in artificial human CFS.
  • the "high series” contained pGlu3-A (40/42) SEQ ID NOs: 28 and 30 in the range from 78 fg/ml up to 27 pg/ml in artificial human CSF.
  • the artificial human CSF consists of:
  • Figure 2 shows the recovery plot for high and low concentration of standards. It can be seen from Figure 2 that the developed method allows the detection and quantitation of pGlu- ⁇ peptides over a broad linear range of the calibration curve with high precision and accuracy. The method is very sensitive and allows the quantitation of pGlu- ⁇ peptides down to 4.2 fg/ml.
  • Example 5 Determination of pGlu3-Ap40 (SEQ ID NO: 28) and pGlu3-A 42 (SEQ ID NO: 30) in CSF samples
  • CSF samples were obtained from patients with a clinical diagnosis of AD and healthy controls according to standard procedures.
  • a standard curve and quality control samples (QCs) were generated and used as described in Example 5.
  • Acceptance criteria for precision (%CV) and accuracy (%RE) for the CSF samples and QCs were ⁇ 20% for the lower limit of quantitation (LLOQ) and ⁇ 25% for the upper limit of quantitation (ULOQ).
  • Individual CSF samples (see sample # in Table 6) were measured as described in Example 3. The pGlu3-A concentration was calculated based on the standard curve.
  • Table 6 shows the results of the quantitation of pGlu3-A 40 (SEQ ID NO: 28) and pGlu3- ⁇ 42) (SEQ ID NO: 30).
  • the values for the pGlu- ⁇ concentration represent the concentration of pGlu3-A 40 (SEQ ID NO: 28) and pGlu3-Ap42 (SEQ ID NO: 30) as a sum parameter.
  • the precision (%CV) is used as an acceptance criterion for biomarkers.
  • the precision threshold for a biomarker to accepted is %CV ⁇ 30%.
  • the results in Table 6 show that the precision (%CV) in all measurements was ⁇ 30% and therefore meet the precision acceptance criterion for biomarkers.
  • Example 7 Psychometric tests for identification of subjects suffering from a neurodegenerative disease
  • the DemTect scale is a brief screening for dementia comprising five short subtests (10-word list repetition, number transcoding, semantic word fluency task, backward digit span, delayed word list recall) (Kessler et at., 2000).
  • the raw scores are transformed to give age- and education-independent scores, classified as 'suspected dementia' (score ⁇ 8), 'mild cognitive impairment' (score 9 - 12), and 'appropriate for age' (score 13 - 18).
  • MMSE Mini-Mental State Examination
  • Folstein test is a brief 30-point questionnaire test that is used to assess cognition (see Table 4). It is commonly used in medicine to screen for dementia. In the time span of about 10 minutes it samples various functions including arithmetic, memory and orientation. It was introduced by Folstein et at., 1975, and is widely used with small modifications.
  • the MMSE includes simple questions and problems in a number of areas: the time and place of the test, repeating lists of words arithmetic, language use and comprehension, and basic motor skills. For example, one question asks to copy drawing of two pentagons (see next table). Any score over 27 (out of 30) is effectively normal. Below this, 20 -26 indicates mild dementia; 10 -19 moderate dementia, and below 10 severe dementia. The normal value is also corrected for degree of schooling and age. Low to very low scores correlate closely with the presence of dementia, although other mental disorders can also lead to abnormal findings on MMST testing.
  • Scoring of the clocks was based on a modification of the scale used by Shulmann et at., 1986. All circles were pre-drawn and the instruction to subjects was to "set the time 10 after 1 1 ".
  • the scoring system (see Table 5) ranges in scores from 1 to 6 with higher scores reflecting a greater number of errors and more impairment. This scoring system is empirically derived and modified on the basis of clinical practice. Of necessity, it leaves considerable scope for individual judgment, but it is simple enough to have a high level of interrater reliability. Our study lends itself to the analysis of the three major components. These include cross-sectional comparisons of the clock-drawing test with other measures of cognitive function; a longitudinal description of the clock-drawing test over time, and the relationship between deterioration on the clock-drawing test and the decisions to institutionalize.
  • pGlu- ⁇ concentration in humans all of the following body fluids can be used: blood, cerebrospinal fluid, urine, lymph, saliva, sweat, pleura fluid, synovial fluid, aqueous fluid, tear fluid, bile and pancreas secretion.
  • CSF samples were collected into three polypropylene tubes:
  • Plasma or serum was pipetted off, filled in one 5 ml polypropylene cryo-tube (Carl-Roth, E295.1 ) and stored frozen at -80 'C. Samples were centrifuged within one hour after blood withdrawal. The appropriate labelling of the plasma or serum tubes according to the study protocol was duty of the CRO.
  • the raw scores are transformed to give age- and education-independent scores, classified as 'suspected dementia' (score ⁇ 8), 'mild cognitive impairment' (score 9 - 12), and 'appropriate for age' (score 13 - 18).
  • the test results for all visits are shown in Figure 3.
  • the results from Figure 3 demonstrate that there are clear differences between the three groups of healthy subjects compared with the patients.
  • the scoring system ranges in scores from 1 to 6 with higher scores reflecting a greater number of errors and more impairment.
  • This scoring system is empirically derived and modified on the basis of clinical practice. Of necessity, it leaves considerable scope for individual judgment, but it is simple enough to have a high level of interrater reliability.
  • Our study lends itself to the analysis of the three major components. These include cross- sectional comparisons of the clock-drawing test with other measures of cognitive function; a longitudinal description of the clock-drawing test over time, and the relationship between deterioration on the clock-drawing test and the decisions to institutionalize. The test results are shown in Figure 5. The results from Figure 5 demonstrate that there are clear differences between the three groups of healthy subjects compared with the patients.
  • Beta-amyloid imaging and memory in non-demented individuals evidence for preclinical Alzheimer's disease. Brain. 2007 Nov;130(Pt 1 1):2837-44
  • Petrella JR Wang L, Krishnan S, Slavin MJ, Prince SE, Tran TT, Doraiswamy PM. Cortical deactivation in mild cognitive impairment: high-field-strength functional MR imaging. Radiology. 2007 Oct;245(1):224-35
  • Fagan AM Roe CM, Xiong C, Mintun MA, Morris JC, Holtzman DM. Cerebrospinal fluid tau/beta-amyloid(42) ratio as a prediction of cognitive decline in nondemented older adults. Arch Neurol. 2007 Mar ;64(3):343-9.
  • Amyloid beta protein in plasma from patients with sporadic Alzheimer's disease J Neurol Sci. 1996 Sep 15;141 (1-2):65-8 Vanderstichele H, Van Kerschaver E, Hesse C, Davidsson P, Buyse MA, Andreasen N, Minthon L, Wallin A, Blennow K, Vanmechelen E. Standardization of measurement of beta- amyloid (1 -42) in cerebrospinal fluid and plasma.
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Abstract

The invention relates to a highly sensitive method for the detection of pGlu-Abeta (pGlu-Αβ) peptides and the use of this method in the diagnosis of neurodegenerative diseases, such as Alzheimer's disease and Mild Cognitive Impairment. The invention further concerns a novel method for monitoring the effectiveness of a treatment of neurodegenerative diseases by monitoring changes in the level of pGlu-Αβ peptides.

Description

Novel method for the detection of pGlu-Abeta peptides
FIELD OF THE INVENTION
The invention relates to a highly sensitive method for the detection of pGlu-Abeta (pGlu-Αβ) peptides and the use of this method in the diagnosis of neurodegenerative diseases, such as Alzheimer's disease and Mild Cognitive Impairment. The invention further concerns a novel method for monitoring the effectiveness of a treatment of neurodegenerative diseases by monitoring changes in the level of pGlu-Αβ peptides. BACKGROUND OF THE INVENTION
Alzheimer's disease is the most common form of dementia and has a prevalence of approximately 65-70% among all dementia disorders (Blennow et al., 2006). Resulting from increased life expectancy, this disease has become a particular issue in highly developed industrialised countries like Japan and China as well as in the US and Europe. The number of Alzheimer patients is estimated to increase from 24 million in 2001 to 81 million in 2040 (Ferri et at., 2005). Currently, the costs for treatment and care of AD patients worldwide amount to approximately 250 billion US dollars per year.
The progression of the sporadic form of the disease is relatively slow and Alzheimer's disease will usually last for about 10-12 years after the onset of first symptoms. Presently, it is extremely difficult to make a reliable and early diagnosis of AD and distinguish it from other forms of dementia. A good diagnosis with a reliability of more than 90% is only possible in the later stages of the disease. Prior to that, it is only possible to make a prediction that Alzheimer's is possible or probable; diagnosis here relies on the use of certain criteria according to Knopman et al., 2001 ; Waldemar et al., 2007 or Dubois et al., 2007. Neurodegeneration starts however 20 to 30 years before the first clinical symptoms are noticed (Blennow et at., 2006; Jellinger KA, 2007). The onset of the clinical phase is usually characterized by the so-called "mild cognitive impairment" (MCI), where patients will show measurable cognitive deficits which are not sufficient to enable a diagnosis of a dementia disease in a clear fashion (Petersen et al., 1999; Chetkow et al., 2008). Many patients with MCI will have neuropathological changes which are typical for AD and which means that an earlier stage of AD is possible, but not certain (Scheff et al., 2006; Markesbery et al., 2006; Bouwman et al., 2007). There are however many MCI cases which will not progress to Alzheimer's; in these cases, other factors are responsible for the cognitive deficit (Saito et al., 2007; Jicha et al., 2006 and Petersen et al., 2006). While some MCI patients will not show any deterioration of their condition or even some kind of amelioration, for most MCI cases the cognitive deficit will continue to clinical dementia. The yearly rate of this conversion is approximately 10-19% (Gauthier et al., 2006; Fischer et al., 2007). At present there is a combination of clinical, neuropsychological and imaging processes which are capable of differentiating the various subtypes of Mild Cognitive Impairment (Devanand et ai, 2007; Rossi et al., 2007; Whitwell et al., 2007; Panza et al., 2007). However, there is no significant difference between these subtypes in relation to the further progression of dementia (Fischer et al., 2007). Thus, it is of utmost importance to develop a method to enable a clear and reliable diagnosis of Alzheimer's disease in the early stages, suitably at its onset or during MCI.
Prior art biomarkers
Biomarkers for Alzheimer's disease have already been described in the prior art. Alongside well known psychological tests such as e.g. ADAS-cog, MMSE, DemTect, SKT or the Clock Drawing test, biomarkers are supposed to improve diagnostic sensitivity and specificity for first diagnosis as well as for monitoring the progression of the disease. In relation to the current status of development of biomarkers for AD/MCI it was proposed to correlate the disease in the future with the other diagnostic criteria (Whitwell et al., 2007; Panza et al., 2007; Hyman SE, 2007). Biomarkers are supposed to support the classical neuro-psychological tests in the future. There is a common belief that they will be of great importance as surrogate markers for the development of agents against Alzheimer's (Blennow K, 2004; Blennow K, 2005; Hampel et al., 2006; Lewczuk et al., 2006; Irizarry MC, 2004).
Structural biomarkers
"Magnetic resonance imaging" (MRI) is an imaging process which allows detection of degenerative atrophies in the brain (Barnes J et al., 2007; Vemuri et al., 2008). Thus, atrophy of the medial temporal lobe (MTA) is sensitive to a degeneration of the hippocampal region in the brain of older patients; this can be made visible very clearly by MRI, but is not specific for Alzheimer's disease. Mild MTA is not encountered more frequently in other dementias (Barkhof et al., 2007) but it does correlate with MCI (Mevel et al, 2007). For this reason it is not possible to determine from MRI data alone whether the neurodegeneration is Alzheimer's disease or an early stage of Alzheimer's disease. A further imaging method is Positron Emission Tomography (PET) which visualises the accumulation of a detector molecule (PIB) on amyloid deposits. It could be detected that the thioflavin T-analogue ( C)PIB will accumulate increasingly in certain regions of the brain of patients with MCI or mild Alzheimer's disease, respectively (Kemppainen et al., 2007; Klunk et al., 2004; Rowe et al., 2007); unfortunately this can also be detected in subjects who do not have dementia (Pike et al., 2007). This would probably indicate that the detection of amyloid deposits via PET allows detection of pre-clinical stages of Alzheimer's; however, this has to be confirmed by further studies. Besides the most frequently used processes, MRI and PET, there are additional structural biomarkers for AD: CBF-SPECT, CMRg1 -PET (glucose metabolism proton spectroscopy (H-1 MRS), high field strength functional MRI, voxel-based morphometry, enhanced activation of the mediobasal temporal lobe (detected by fMRI, (R)-[( )C]PK1 1 195 PET for the detection of microglial cells (Huang et al., 2007; Kantarci et al., 2007; Petrella et al., 2007; Hamalainen et al., 2007; Kircher et al., 2007; Kropholler et al., 2007).
CSF Biomarkers
Senile plaques are one of the pathological characteristics of Alzheimer's disease. These plaques consist mostly of Αβ (1 -42) peptides (Attems J, 2005). In some studies it could be shown that a low level of Αβ (1 -42) in CSF of MCI patients correlates specifically with the further development of Alzheimer's disease in its progression (Blennow and Hampel, 2003; Hansson et al., 2006 and 2007). The reduction in CSF is probably due to enhanced aggregation of Αβ (1 -42) in the brain (Fagan et al., 2006; Prince et al., 2004; Strozyk et al., 2003). Another possibility is the occurrence of semi-soluble Αβ (1 -42) oligomers (Walsh et al., 2005) which would lead to a lower level of detection in CSF. In particular in the early stages of Alzheimer's, decreased concentrations of Αβ (1 -42) would be detected, while increased amounts of Tau protein and phospho-tau proteins in CSF, respectively, could be detected (Ewers et al., 2007; Lewczuk et al., 2004). To provide a better predictability of biomarkers, it is usually attempted to use the Tau/ Αβ (1 -42) ratio and correlate it with the prediction of cognitive deficiency in older persons who do not have dementia (Fagan etal., 2007; Gustafson et al., 2007; Hansson et al., 2007; Li et al., 2007; Stomrud et al., 2007) as well as in MCI patients (Hampel et al., 2004; Maccioni et al., 2006; Schonknecht et al., 2007). A further correlation between ante mortem CSF level of Αβ (1 -42), Tau, phospho-Tau-Thr231 and postmortem histopathological alterations of the brain could be detected in AD patients (Clark et al., 2003; Buerger etal., 2006). In other studies, however, no correlation between CSF biomarkers and Αβ (1 -42), total Tau and phospho-Tau with APOE e4-allele, plaque and tangle load after autopsy could be detected (Engelborghs et al., 2007; Buerger et al., 2007). An interesting aspect was detected in a multicenter study. It appears that increased level of total Tau and phospho-Tau (181 ) correlates with a decreased ratio of Αβ (1 -42)/ Αβ (1 -40), but not with the Αβ (1 -42) alone (Wiltfang et al., 2007). An increased level of CSF Tau was however also detected in other CNS diseases such as Creutzfeldt-Jakob disease, brain infarction, and cerebral vascular dementia, which are all associated with a neuronal loss (Buerger et al., 2006 (2); Bibl et ai, 2008). A further possible biomarker is the increase of BACE 1 activity in CSF as an indicator for MCI (Zhong et ai, 2007). It is also discussed that the increased BACE 1 activity will result in increased Αβ production and therefore increased aggregation of the peptides. Alzheimer's disease is accompanied by neuroinflammatory processes. CSF anti- microglial cell antibodies are therefore possible biomarkers for these inflammatory processes in AD (McRea et al., 2007).
In spite of the multitude of biomarkers which are supposed to enable early diagnosis of Alzheimer's disease, there is not a single biomarker that ensures reliable and clear diagnosis. This is usually because most studies use a comparison of the respective biomarkers and clinical diagnosis. A better approach would be the correlation of biomarkers with the pathological causes of Alzheimer's disease.
A possible approach would be repeated analysis of immuno-precipitated CSF samples of clearly identified and defined neuropathological dementia diseases to clarify whether Αβ (1 - 40) and Αβ (1 -42) are in fact suitable neurochemical dementia markers (Jellinger et al., 2008). In order to discover novel, up to now unknown, biomarkers for Alzheimer's disease, CSF samples are usually analyzed via a comparative proteomic analysis which results in a diagnosis of AD with enhanced sensitivity and also to enable the differentiation from other degenerative dementia disorders (Finehout et ai, 2007; Castano et ai, 2006; Zhang et ai, 2005; Simonsen et ai, 2007; Lescuyer et ai, 2004; Abdi et ai, 2006). After a proteomic analysis, the potential new biomarker should be analyzed in detail for its suitability and correlation with pathological causes. A typical example for a biomarker which was found by a proteomic analysis is truncated cystatin C as a biomarker for multiple sclerosis; this biomarker was later proven to be a storage artefact (Irani et al., 2006; Hansson et al., 2007(2)).
Plasma Biomarkers
Besides the frequently used plasma biomarkers, i.e. the Αβ peptides, further inflammatory plasma markers are used for the early diagnosis of dementia (Ravaglia et ai, 2007; Engelhart et ai, 2004) in particular for Alzheimer's (Motta et ai, 2007). All of these are still under discussion. Further possible biomarkers were also found via comparative proteomic analysis of plasma from AD patients and healthy controls (German et al., 2007; Ray et al., 2007). The future will show whether these biomolecules are indeed specific for Alzheimer's disease and are suitable as biomarkers. There is no convincing or suitable data which would show either specificity or suitability of any of the biomarkers discussed above.
Contrary to the analysis of amyloid β in CSF, the results until now with respect to suitable Αβ biomarkers in plasma are not reliable or clear. In some studies a correlation between a decreased ratio of Αβ (1 -42)/ Αβ (1 -40) in plasma and an enhanced conversion of cognitive normal persons to MCI or Alzheimer patients, respectively, was found ((Graff-Radford et al., 2007; van Oijen et al., 2006; Sundelof et al., 2008). Other studies however detected that a reduction of the Αβ (1 -42) plasma level is more likely a marker for the conversion from MCI to AD (Song et al., 2007) and is not suitable as a marker for neurodegenerative purposes which are encountered with Alzheimer's (Pesaresi et al., 2006). Most of the studies however do not show a difference in Αβ plasma levels between healthy controls and patients with sporadic Alzheimer's (Fukumoto et al., 2003; Kosaka et al., 1997; Scheuner et al., 1996; Sobow et al., 2005; Tamaoka et al., 1996; Vanderstichele et al., 2000). Some studies also showed that the level of Αβ in plasma does not correlate with the level as encountered in the brain (Fagan et al., 2006; Freeman et al., 2007) nor does it correlate with the level encountered in CSF (Mehta et al., 2001 ; Vanderstichele et al., 2000). In a recent study, a correlation was detected for Αβ (1 -40) and Αβ (1 -42) between CSF and plasma, but only in healthy controls. This correlation could not be detected in MCI and AD which is explained by destroying the balance between CSF and plasma Αβ due to Αβ deposits in the brain (Giedraitis et al., 2007). Generally, it is assumed that plasma Αβ (1 -42) level is not a reliable biomarker for MCI or AD (Blasko et al., 2008; Mehta et al., 2000; Brettschneider et al., 2005), whereas a decrease of the ratio plasma Αβ (1 -38) / Αβ (1 -40) is considered a biomarker for vascular dementia and comes close to the predictability of CSF markers (Bibl et al., 2007).
Moreover, Αβ oligomers are supposed to play a decisive role in initiating the neurodegenerative process (Walsh & Selkoe, 2007). In several studies, the neurotoxic effect was shown for Αβ dimers with 8 kDa to the point of protofibrils with over 100 kDa (Lambert et al., 1998; Walsh et al, 2002; Keayed et al., 2004; Cleary et al., 2005). Furthermore, such Αβ oligomers were found in human liquor (Pitschke et al., 1998; Santos et al., 2007; Klyubin et al., 2008). Besides their neurotoxicity, oligomers have also an influence on the determination of the Αβ concentration in human samples. The oligomerization leads to masking of the C-terminal epitopes of Αβ peptides (Roher et al., 2000) yielding to underestimated Αβ levels detected by C-terminal specific ELISA (Stenh et al., 2005). Englund et al., 2009, determined the Αβ 1 -42 oligomer ratio in human CSF samples by measuring the Αβ 1 -42 concentration under non-denaturing conditions via ELISA and under denaturing conditions using SDS-PAGE followed by Western Blot analysis. Another more common approach is the direct measurement of Αβ oligomers. Such a method, especially with oligomeric plasma Αβ as a biomarker, is however extremely difficult to establish as the Αβ peptides are very hydrophobic. Currently described assay systems use Αβ oligomer specific antibodies in a ELISA system (Englund et al., 2007; Schupf et at, 2008). However, the usage of ELISAs based on such oligomer specific antibodies have the same problems as traditional Αβ ELISA systems. The methods only achieve very unsatisfactory analytical sensitivity and encounter great problems with the very complex interactions between analytes and matrix, i.e. plasma. Usually, ELISA or ELISA-type systems (Multiplex) are used for quantification of Αβ, and recently also Αβ oligomers, in plasma. The specification of such detections systems is usually only unsatisfactorily analyzed or are completely disregarded. For example a critical item like the recovery rate is not analyzed or is not sufficiently investigated in the publications. The recovery rate is however decisive for giving a complete picture of those Αβ peptides or oligomers which occur in plasma. Differences between the studies can also result from the differences in these rates. A further important characteristic of an ELISA or multiplex system is its linearity. Thus, the concentrations determined for the analytes in plasma should only depend on the dilution used in the measurement to a very low degree or not at all. However, this is neither possible for ELISA nor for the multiplex systems for quantification of Αβ in plasma. Thus, the difference between the calculated plasma Αβ (1 -42) concentration for a dilution of 1 -20 was three times as high as for the 1 -2 dilution of the same sample (Hansson et al., 2008). This example alone shows that the use of different dilutions of plasma samples in the several studies makes it impossible to compare the same.
Current methods used to diagnose AD involve analysis of cerebrospinal fluid (CSF) or brain tissue obtained from postmortem patients. Thus, among the markers currently under consideration are those related to the proteins, which account for the features found in Alzheimer brains postmortem. The neurofibrillary tangle is composed primarily of a hyperphosphorylated tau protein, a cytoskeletal protein. The neuritic plaque contains a core of amyloid protein, much of which is a 42-amino acid peptide (Αβ42) derived from proteolytic cleavage of a larger precursor protein. Another form of this protein derived from the same precursor contains only 40 amino acids (Αβ40). Deposits of this protein are found in the brains of AD victims. However, alterations in tau and the aforementioned beta amyloid peptides do not occur with sufficient frequency and magnitude so as to afford diagnostic value and therefore, blood tests based on these proteins do not seem to correlate well with AD. In addition to C-terminal variability, N-terminally modified Αβ peptides are abundant (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, Αβ N3(pE), in senile plaques. Neuron 14, 457-466 (1995) ; Russo, C. et al. Presenilin-1 mutations in Alzheimer's disease. Nature 405, 531 -532 (2000); Saido, T.C, Yamao, H., Iwatsubo, T. & Kawashima, S. Amino- and carboxyl-terminal heterogeneity of beta-amyloid peptides deposited in human brain. Neurosci. Lett. 215, 173-176 (1996)). It appears that a major proportion of the Αβ peptides undergoes N-terminal truncation by two amino acids, exposing a glutamate residue, which is subsequently cyclized into pyroglutamate (pGlu or pE), resulting in pGlu-A (3-42) peptides (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, Αβ N3(pE), in senile plaques. Neuron 14, 457-466 (1995) ; Saido, T.C, Yamao, H., Iwatsubo, T. & Kawashima, S. Amino- and carboxyl-terminal heterogeneity of beta-amyloid peptides deposited in human brain. Neurosci. Lett. 215, 173- 176 (1996)). Alternatively, pGlu may be formed following β'-cleavage by BACE1 , resulting in ρΰΙυ-Αβ(1 1 -42) (Naslund, J. et al. Relative abundance of Alzheimer Αβ amyloid peptide variants in Alzheimer disease and normal aging. Proc. Natl. Acad. Sci. U. S. A. 91 , 8378-8382 (1994); Liu, K. et al. Characterization of Αβ(1 1 -40/42) peptide deposition in Alzheimer's disease and young Down's syndrome brains: implication of N-terminally truncated Abeta species in the pathogenesis of Alzheimer's disease. Acta Neuropathol. 1 12, 163-174 (2006)). In particular ρΘΙυ-Αβ(3-42) has been shown to be a major constituent of Αβ deposits in sporadic and familial AD (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, Αβ N3(pE), in senile plaques. Neuron 14, 457-466 (1995) ; Miravalle, L. et al. Amino-terminally truncated Αβ peptide species are the main component of cotton wool plaques. Biochemistry 44, 10810-10821 (2005)).
The ρΘΙυΑβ(3-42 peptides coexist with Αβ(1 -40/1 -42) peptides (Saido, T.C. et al. Dominant and differential deposition of distinct beta-amyloid peptide species, Abeta N3pE, in senile plaques. Neuron 14, 457-466 (1995) ; Saido, T.C, Yamao, H., Iwatsubo, T. & Kawashima, S. Amino- and carboxyl-terminal heterogeneity of beta-amyloid peptides deposited in human brain. Neurosci. Lett. 215, 173-176 (1996)), and, based on a number of observations, could play a prominent role in the pathogenesis of AD. For example, a particular neurotoxicity of ρΘΙυΑβ(3-42) peptides has been outlined (Russo, C. et al. Pyroglutamate-modified amyloid beta-peptides-AbetaN3(pE)~strongly affect cultured neuron and astrocyte survival. J. Neurochem. 82, 1480-1489 (2002) and the pGlu-modification of N-truncated Αβ peptides confers resistance to degradation by most aminopeptidases as well as Αβ-degrading endopeptidases (Russo, C. et al. Pyroglutamate-modified amyloid beta-peptides- AbetaN3(pE)-strongly affect cultured neuron and astrocyte survival. J. Neurochem. 82, 1480- 1489 (2002); Saido, T.C. Alzheimer's disease as proteolytic disorders: anabolism and catabolism of beta-amyloid. Neurobiol. Aging 19, S69-S75 (1998)). The cyclization of glutamic acid into pGlu leads to a loss of N-terminal charge resulting in accelerated aggregation of Αβ peptides having a pGlu residue at their N-terminus compared to the unmodified Αβ peptides (He, W. & Barrow, C.J. The Αβ 3-pyroglutamyl and 1 1 -pyroglutamyl peptides found in senile plaque have greater beta-sheet forming and aggregation propensities in vitro than full-length Αβ. Biochemistry 38, 10871 -10877 (1999); Schilling, S. et al. On the seeding and oligomerization of pGlu-amyloid peptides (in vitro). Biochemistry 45, 12393-12399 (2006)). Thus, reduction of ρΰΙυ-Αβ(3-42) formation should destabilize the peptides by making them more accessible to degradation and would, in turn, prevent the formation of higher molecular weight Αβ aggregates and enhance neuronal survival.
However, for a long time it was not known how the pGlu-modification of Αβ peptides occurs. The present Applicant discovered that glutaminyl cyclase (QC) is capable to catalyze pGlu- Αβ(3-42) formation under mildly acidic conditions, that specific QC inhibitors prevent pGlu- Αβ(3-42) generation in vitro and that, therefore, inhibition of glutaminyl cyclase is a novel therapeutic concept for the causative treatment of Alzheimer's disease (Schilling, S., Hoffmann, T., Manhart, S., Hoffmann, M. & Demuth, H.-U. Glutaminyl cyclases unfold glutamyl cyclase activity under mild acid conditions. FEBS Lett. 563, 191 -196 (2004) ; Cynis, H. et al. Inhibition of glutaminyl cyclase alters pyroglutamate formation in mammalian cells. Biochim. Biophys. Acta WSA, 1618-1625 (2006); Schilling etal. Inhibition of glutaminyl cyclase - a novel therapeutic concept for the causative treatment of Alzheimer's disease. Nature Medicine 14, 1 106-1 1 1 1 (2008)).
The main problem associated with using pGlu-Αβ peptides as a biomarker for AD, MCI and NDS is that these peptides occur in high concentrations in senile plaques of the patients. I.e. the level of pGlu-Αβ peptides and/or changes in their level can only be determined by post mortem analysis of brain tissue. In contrast, only trace amounts or very low levels of pGlu-Αβ peptides can be found in other biological fluids, such as CSF, blood, plasma, serum or urine, which would allow a continuous monitoring of the pGlu-Αβ peptides during the life-time of the patients from time points prior to the onset of the diseases. However, present assay for pGlu- Αβ peptides are not sensitive enough for a robust detection and quantification these trace amounts. Accordingly, at present, there appears to be no satisfactory- diagnostic marker for manifested AD or MCI or for a subject, who, although exhibiting normal cognitive responses, inevitably, or most likely, is suspected to develop AD.
Age-Associated Cognitive Decline (AACD) and Mild Cognitive Impairment (MCI) are terms used to identify individuals who experience a cognitive decline that falls short of dementia. These terms are equivalent, MCI being a more recently adopted term, and are used interchangeably throughout this application. Satisfaction of criteria (World Health Organization) for this diagnosis requires a report by the individual or family of a decline in cognitive function, which is gradual, and present at least 6 months. There may be difficulties across any cognitive domains (although memory is impaired in the vast majority of cases), and these must be supported by abnormal performance on quantitative cognitive assessments for which age and education norms are available for relatively healthy individuals (i.e., the patient is compared to normal subjects his/her own age) . Performance must be at least 1 SD below the mean value for the appropriate population on such tests. Neither dementia, nor significant depression or drug effects may be present. No cerebral or systemic disease or condition known to cause cerebral cognitive dysfunction may be present. In Applicant's experience, all patients who were classified as CDR.5 ("questionable dementia") on the Clinical Dementia rating scale and who met these exclusions, also met the criteria for AACD/MCI. About 1 /3 of Alzheimer's patients have had a clearly definable period of isolated memory deficit which preceded their more global cognitive decline. (Haxby J. V., et al . , Individual trajectories of cognitive decline in patients with dementia of the Alzheimer type, J. Clin. Exp. Neuropsychology 14:575-592, 1992.) Using AACD/MCI criteria, which look at other domains in addition to memory, the percentage with an identifiable prodrome is likely higher. Fortunately, not all AACD/MCI individuals seem to decline. It appears that a significant number of these subjects show a stable, non-progressive memory deficit on testing.
Attempts at predicting the onset of AD, MCI or NDS, or monitoring their progression have met with limited success. It has been discovered by the inventors of this application that an amount of a pGlu-Αβ peptide in a biological sample obtained from a subject that deviates from a reference amount in a control person can be positively correlated to a neurological disease state. Thus, the correlation of the presence of pGlu-Αβ peptide with the disease state represents a positive and more direct test for diagnosis in a patient suffering from one of the neurodegenerative diseases described above. The present invention is particularly based on the development of a novel assay method, which shows a dramatically improved sensitivity for the detection of pGlu-Αβ peptides in biological samples. Accordingly, it is an objective of the present invention to provide an easily applicable biological sample test for predicting, diagnosing, or prognosticating AD and MCI using pGlu-Αβ peptides as a diagnostic marker. This easily applicable biological sample test is also suitable for monitoring the efficacy of novel treatments for AD and MCI.
Moreover, the present invention aims at providing pGlu-Αβ peptides as diagnostic markers which can be determined with reliable methods and can be used for reliable and clear prediction of AD and MCI. SUMMARY OF THE INVENTION
According to a first aspect of the invention there is provided a highly sensitive method for the detection of an Αβ target peptide in a biological sample, comprising a capture reagent which is specific for said Αβ target peptide; and an Αβ target peptide detection complex, said method comprising the steps of:
a) contacting a biological sample with said capture reagent and said detection complex; and
b) detecting said Αβ target peptide; wherein the detection complex comprises an Αβ target peptide specific antibody and a nucleic acid marker.
Preferably, the Αβ target peptide is a pGlu-Αβ peptide.
According to a second aspect the invention provides the use of a the novel method for the detection of an Αβ target peptide, such as a pGlu-Αβ peptide in a biological sample in a method of diagnosing or monitoring a neurodegenerative disorder, such as Alzheimer's disease and Mild Cognitive Impairment.
According to a third aspect of the invention there is provided a method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment, which comprises determining the level of a pGlu-Αβ peptide in a biological sample from a test subject, comprising the following steps: determining a first level of a pGlu-Αβ peptide in a biological sample from a subject suspected to be afflicted with said neurodegenerative disease with a method according to present invention;
II comparing the first level of the pGlu-Αβ peptide with a second level of said pGlu-Αβ peptide in a healthy control subject; and
III diagnosing the subject with a neurodegenerative disease where the level of said pGlu-Αβ peptide in said biological sample is increased compared to the level of said pGlu-Αβ peptide in the healthy control subject. In a fourth aspect, the invention provides a method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprising determining determining the level of a pGlu-Αβ peptide in a biological sample from a test subject with a method according to present invention.
In a fifth aspect, the invention provides a kit for diagnosing a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, which comprises at least one detection complex and instructions for using the kit, wherein said detection complex comprises a detection antibody capable of binding an Αβ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules capable of specifically binding said antibody and the nucleic acid marker, and wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide. DEFINITIONS
"Oligomeric" as used herein refers to a limited number of aggregated Αβ peptide monomer units. Examples of such oligomers include dimers, trimers and tetramers. The term "disaggregation" refers to the process of converting oligomeric forms of Αβ peptide to monomeric forms of Αβ peptide.
"Capture antibody" and "detection antibody" in the sense of the present application is intended to encompass those antibodies which bind to an Αβ peptide or a pGlu-Αβ peptide as the analyte. Suitably the capture antibodies and detection antibodies bind to the Αβ peptide with a high affinity. In the context of the present invention, high affinity means an affinity with a KD value of 10 7M or better, such as a KD value of 10~8M or better or even more particularly, a KD value of 10"9M to 10" 2M.
The term "antibody" is used in the broadest sense and specifically covers intact monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g. bispecific antibodies) formed from at least two intact antibodies, and antibody fragments as long as they exhibit the desired biological activity. The antibody may be an IgM, IgG (e.g. lgG1 , lgG2, lgG3 or lgG4), IgD, IgA or IgE, for example. Suitably however, the antibody is not an IgM antibody. The "desired biological activity" is binding to a target Αβ peptide.
"Antibody fragments" comprise a portion of an intact antibody, generally the antigen binding or variable region of the intact antibody. Examples of antibody fragments include Fab, Fab', F(ab')2, and Fv fragments: diabodies; single-chain antibody molecules; and multispecific antibodies formed from antibody fragments.
The term "monoclonal antibody" as used herein refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e. the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to "polyclonal antibody" preparations which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen. In addition to their specificity, the monoclonal antibodies can frequently be advantageous in that they are synthesized by the hybridoma culture, uncontaminated by other immunoglobulins. The "monoclonal" indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring production of the antibody by any particular method. For example, the monoclonal antibodies to be used in accordance with the present invention may be made by the hybridoma method first described by Kohler et al., Nature, 256:495 (1975), or may be made by generally well known recombinant DNA methods. The "monoclonal antibodies" may also be isolated from phage antibody libraries using the techniques described in Clackson et at., Nature, 352:624-628 (1991 ) and Marks et ai, J. Mol. Biol., 222:581 -597 (1991 ), for example. The monoclonal antibodies herein specifically include chimeric antibodies (immunoglobulins) in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity.
"Humanized" forms of non-human (e.g., murine) antibodies are chimeric immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab', F(ab')2 or other antigen- binding subsequences of antibodies) which contain a minimal sequence derived from a non- human immunoglobulin. For the most part, humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a complementarity-determining region (CDR) of the recipient are replaced by residues from a CDR of a non-human species (donor antibody) such as mouse, rat or rabbit having the desired specificity, affinity, and capacity. In some instances, Fv framework region (FR) residues of the human immunoglobulin are replaced by corresponding non-human residues. Furthermore, humanized antibodies may comprise residues which are found neither in the recipient antibody nor in the imported CDR or framework sequences.
These modifications are made to further refine and optimize antibody performance. In general, the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non- human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence. The humanized antibody optimally also will comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin. For further details, see Jones et at., Nature, 321 :522-525 (1986), Reichmann et al, Nature. 332:323-329 (1988): and Presta, Curr. Op. Struct. Biel., 2:593-596 (1992). The humanized antibody includes a Primatized™ antibody wherein the antigen-binding region of the antibody is derived from an antibody produced by immunizing macaque monkeys with the antigen of interest or a "camelized" antibody.
"Single-chain Fv" or "sFv" antibody fragments comprise the VH and VL domains of an antibody, wherein these domains are present in a single polypeptide chain. Generally, the Fv polypeptide further comprises a polypeptide linker between the VH and VL domains which enables the sFv to form the desired structure for antigen binding. For a review of sFv see Pluckthun in The Pharmacology of Monoclonal Antibodies, vol. 1 13, Rosenburg and Moore eds., Springer- Verlag, New York, pp. 269-315 (1994). The term "diabodies" refers to small antibody fragments with two antigen-binding sites, which fragments comprise a heavy-chain variable domain (VH) connected to a light-chain variable domain (VD) in the same polypeptide chain (VH - VD) . By using a linker that is too short to allow pairing between the two domains on the same chain, the domains are forced to pair with the complementary domains of another chain and create two antigen-binding sites. Diabodies are described more fully in Hollinger et ai, Proc. Natl. Acad. Sol. USA, 90:6444-6448 (1993).
An "isolated" antibody is one which has been identified and separated and/or recovered from a component of its natural environment. Contaminant components of its natural environment are materials which would interfere with diagnostic or therapeutic uses for the antibody, and may include enzymes, hormones, and other proteinaceous or non-proteinaceous solutes. In suitable embodiments, the antibody will be purified (1 ) to greater than 95% by weight of antibody as determined by the Lowry method, and most particularly more than 99% by weight, (2) to a degree sufficient to obtain at least 15 residues of N-terminal or internal amino acid sequence by use of a spinning cup sequenator, or (3) to homogeneity by SDS-PAGE under reducing or non-reducing conditions using Coomassie blue or, suitably, silver stain. Isolated antibody includes the antibody in situ within recombinant cells since at least one component of the antibody's natural environment will not be present. Ordinarily, however, isolated antibody will be prepared by at least one purification step. As used herein, the expressions "cell", "cell line," and "cell culture" are used interchangeably and all such designations include progeny. Thus, the words "transformants" and "transformed cells" include the primary subject cell and culture derived therefrom without regard for the number of transfers. It is also understood that all progeny may not be precisely identical in DNA content, due to deliberate or inadvertent mutations. Mutant progeny that have the same function or biological activity as screened for in the originally transformed cell are included. Where distinct designations are intended, this will be clear from the context.
The terms "polypeptide", "peptide", and "protein", as used herein, are interchangeable and are defined to mean a biomolecule composed of amino acids linked by a peptide bond. The terms "a", "an" and "the" as used herein are defined to mean "one or more" and include the plural unless the context is inappropriate.
"Amyloid β, Αβ or β-amyloid" is an in the art recognized term and refers to amyloid β proteins and peptides, amyloid β precursor protein (APP), as well as modifications, fragments and any functional equivalents thereof. In particular, by amyloid β as used herein is meant any fragment produced by proteolytic cleavage of APP but especially those fragments which are involved in or associated with the amyloid pathologies including, but not limited to, Αβ (1 -38) of SEQ ID NO: 1 , Αβ (1 -39) of SEQ ID NO: 2, Αβ (1 -40) of SEQ ID NO: 3, Αβ (1 -41 ) of SEQ ID NO: 4, Αβ (1 -42) of SEQ ID NO: 5, and Αβ (1 -43) of SEQ ID NO: 6.
In the context of the present invention, "fragments of Αβ peptides" are all amyloid β peptides, which comprise a core amyloid β sequence of Αβ(1 1 -38) of SEQ ID NO: 19. Further suitably for the purpose of the present invention are all amyloid β peptides, which comprise the core sequence of Αβ(15-38) of SEQ ID NO: 25. Such Αβ fragments, which comprise the amino acid sequence of Αβ(1 1 -38) of SEQ ID NO: 19 or of Αβ(15-38) of SEQ ID NO: 25, have been shown to accumulate in a subject as a consequence of a neurodegenerative disorder, such as Alzheimer's disease and Mild Cognitive Impairment. Further suitable examples for Αβ fragments are
Αβ (2-38) (SEQ ID NO 7),
Αβ (2-39) (SEQ ID NO 8),
Αβ (2-40) (SEQ ID NO 9),
Αβ (2-41 ) (SEQ ID NO 10),
Αβ (2-42) (SEQ ID NO 1 1 ),
Αβ (2-43) (SEQ ID NO 12),
Αβ (3-38) (SEQ ID NO 13),
Αβ (3-39) (SEQ ID NO 14),
Αβ (3-40) (SEQ ID NO 15),
Αβ (3-41 ) (SEQ ID NO 16),
Αβ (3-42) (SEQ ID NO 17),
Αβ (3-43) (SEQ ID NO 18),
Αβ (1 1 -38) (SEQ ID NO 19),
Αβ (1 1 -39) (SEQ ID NO 20), Αβ (1 1 -40) (SEQ ID NO: 21 ),
Αβ (1 1 -41 ) (SEQ ID NO: 22),
Αβ (1 1 -42) (SEQ ID NO: 23), and
Αβ (1 1 -43) (SEQ ID NO: 24.
"Modified Amyloid β, Αβ or β-amyloid" encompasses all modifications at various amino acid positions in the amyloid β proteins and peptides, amyloid β precursor protein (APP), fragments and functional equivalents thereof. Useful in the present context are modifications at the N- and/or C-terminal amino acids of said amyloid β proteins and peptides, amyloid β precursor protein (APP), fragments and functional equivalents. Particularly useful are modifications at glutamine and glutamate residues, such as the cyclization of N-terminal glutamine or glutamate residues to pyroglutamate. Suitable examples according to the present invention are the amyloid β peptides of SEQ ID Nos. 13 to 24, which start with a glutamate residue at the N- terminus, wherein said the N-terminal glutamate residue is modified to pyroglutamate. Accordingly, particularly useful modified Αβ peptides are the "pGlu-Αβ peptides".
"pGlu-Αβ peptides" in the context of the present invention relate to the following N-terminally pyroglutamated forms of Αβ and Αβ fragments:
pGlu-Αβ (3-38) (SEQ ID NO: 26),
pGlu-Αβ (3-39) (SEQ ID NO: 27),
pGlu-Αβ (3-40) (SEQ ID NO: 28),
pGlu-Αβ (3-41 ) (SEQ ID NO: 29),
pGlu-Αβ (3-42) (SEQ ID NO. 30),
pGlu-Αβ (3-43) (SEQ ID NO: 31 ),
pGlu-Αβ (1 1 -38) (SEQ ID NO: 32),
pGlu-Αβ (1 1 -39) (SEQ ID NO: 33),
pGlu-Αβ (1 1 -40) (SEQ ID NO: 34),
pGlu-Αβ (1 1 -41 ) (SEQ ID NO: 35),
pGlu-Αβ (1 1 -42) (SEQ ID NO: 36), and
pGlu-Αβ (1 1 -43) (SEQ ID NO: 37).
"Functional equivalents" encompass all those mutants or variants of Αβ peptides or pGlu-Αβ peptides which might naturally occur in the patient group which has been selected to undergo the method for detection or method for diagnosis as described according to the present invention. More particularly, "functional equivalent" in the present context means that the functional equivalents of Αβ peptides pGlu-Αβ peptides are mutants or variants thereof and have been shown to accumulate in Alzheimer's disease. The functional equivalents have no more than 30, such as 20, e.g. 10, particularly 5 and most particularly 2, or only 1 mutation(s) compared to the respective Αβ peptide or pGlu-Αβ peptide..
Particularly useful equivalents in the present context are those of Αβ (1 -40) (SEQ ID NO. 2) and Αβ (1 -42) (SEQ ID NO. 1 ), which are those described by Irie et al., 2005, namely the Tottori, Flemish, Dutch, Italian, Arctic and Iowa mutations of Αβ. Functional equivalents also encompass Αβ peptides derived from amyloid precursor protein bearing mutations next to the β- or γ-secretase cleavage site such as the Swedish, Austrian, French, German, Florida, London, Indiana and Australian variations (Irie et al., 2005).
The term "Αβ target peptide" includes "Amyloid β, Αβ or β-amyloid", "fragments of Αβ peptides", "Modified Amyloid β, Αβ or β-amyloid", "pGlu-Αβ peptides" and "Functional equivalents" of the all of those. Preferably, the "Αβ target peptide" is a "pGlu-Αβ peptides", fragment of functional equivalent thereof.
"Sandwich ELISAs" usually involve the use of two antibodies, each capable of binding to a different immunogenic portion, or epitope, of the protein to be detected. In a sandwich assay, the test sample analyte is bound by a first antibody which is immobilized on a solid support, and thereafter a second antibody binds to the analyte, thus forming an insoluble three-part complex. The second antibody may itself be labeled with a detectable moiety (direct sandwich assays) or may be measured using an anti-immunoglobulin antibody that is labeled with a detectable moiety (indirect sandwich assay). For example, one suitable type of sandwich assay is an ELISA assay, in which case the detectable moiety is an enzyme.
The term "nucleic acid marker" or "nucleic acid reporter" refers to a nucleic acid molecule that will produce a detection product of a predicted size or other selected characteristic when used with appropriately designed oligonucleotide primers in a nucleic acid amplification reaction, such as a PCR reaction, preferably a real time PCR reaction. Skilled artisans will be familiar with the design of suitable oligonucleotide primers for PCR and programs are available, for example, over the Internet to facilitate this aspect of the invention (See, for example, http://bibiserv.techfak.uni-bielefeld.de/genefisher2/). A nucleic acid marker may be linear or circular. In specific embodiments, the nucleic acid marker will comprise a predetermined, linear nucleic acid sequence with binding sites for selected primers located at or near each end. In a circular DNA nucleic acid molecule, the primers will be internal rather than at an end, and a single primer may be used, e. g. for Rolling Circle Amplification. Amplified DNA may be detected using any available method, including, but not limited to techniques such as labeled oligonucleotide probes, SYBR Green or ethidium bromide staining or electrochemical methods. In certain embodiments, the DNA sequence located between the primer binding sites comprises a "characteristic identification sequence" capable of being detected during the PCR reaction. Fluorescent signal generation may, for example, be sequence-specific (Molecular Beacons, Taq Man, Scorpions, fluorogenic primers, such as the LUX primers (Invitrogen (Carlsbad, CA.)) or mass dependent (SYBR Green, Ethidium Bromide). The examples provided are not meant to be an exhaustive list of possible nucleic acid detection schemes as those skilled in the art will be aware of alternative markers suitable for use in the methods of the present invention.
The term "characteristic identification sequence" refers to a nucleic acid sequence that can be specifically detected by virtue of hybridization to oligonucleotide or other nucleic acid that has been labeled with a detectable marker such as a radioisotope, a dye (such as a fluorescent dye), or other species that will be known in the art. In some embodiments, the characteristic identification sequence is capable of binding a "molecular beacon" probe. The term "molecular beacon" refers to oligonucleotides such as those sold by Operon Technologies (Alameda, CA, USA) and Synthetic Genetics (San Diego, CA, USA). (See also, Tyagi and Kramer (1996), Nat. Biotechnol, 14 : 303-308 ; and Tyagi et al. (2000), Nat Biotechnol, 18 : 1 191 -96 ). In another specific embodiment, the identification sequence is capable of binding a Scorpion. ^Scarpions" are bifunctional molecules containing a PCR primer covalently linked to a probe. The fluorophore in the probe interacts with a quencher which reduces fluorescence. During a PCR reaction the fluorophore and quencher are separated which leads to an increase in light output from the reaction tube. Scorpions are sold by DxS Ltd. (Manchester, UK). As noted herein, a signal can be generated using a variety of techniques and reagents. The terms "polynucleotide" and "nucleic acid (molecule)" are used interchangeably to refer to polymeric forms of nucleotides of any length, including naturally occurring and non-naturally occurring nucleic acids. The polynucleotides may contain deoxyribonucleotides, ribonucleotides and/or their analogs. Methods for selection and preparation of nucleic acids are diverse and well described in standard biomolecular protocols. A typical way would be preparative PCR and chromatographic purification starting from existing template DNAs or stepwise synthesis of artificial nucleic acids.
Nucleotides may have any three-dimensional structure, and may perform any function, known or unknown. The term "nucleic acid molecule" includes single-, double-stranded and triple helical molecules. "Oligonucleotide" refers to polynucleotides of between 3 and about 100, for example 3-50, 5-30, or 5-20 nucleotides of single- or double-stranded nucleic acid, typically DNA. Oligonucleotides are also known as oligomers or oligos and may be isolated from genes, or chemically synthesized by methods known in the art. A "primer" refers to an oligonucleotide, usually single-stranded, that provides a 3'-hydroxyl end for the initiation of enzyme-mediated nucleic acid synthesis. The following are non-limiting embodiments of nucleic acids: a gene or gene fragment, exons, introns, mRNA, tRNA, rRNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids, vectors, isolated DNA of any sequence, isolated RNA of any sequence, nucleic acid probes and primers. A nucleic acid molecule may also comprise modified nucleic acid molecules, such as methylated nucleic acid molecules and nucleic acid molecule analogs. Analogs of purines and pyrimidines are known in the art, and include, but are not limited to, aziridinylcytosine, 4-acetylcytosine, 5-fluorouracil, 5-bromouracil, 5- carboxymethylaminomethyl-2-thiouracil, 5-carboxymethyl-aminomethyluracil, inosine, N6- isopentenyladenine, 1 -methyladenine, 1 - methylpseudouracil, 1 -methylguanine, 1 - methylinosine, 2,2-dimethylguanine, 2-methyladenine, 2-methylguanine,3-methylcytosine,5- methylcytosine, pseudouracil, 5-pentylnyluracil and 2,6-diaminopurine. The use of uracil as a substitute for thymine in a deoxyribonucleic acid is also considered an analogous form of pyrimidine. A nucleic acid may also include a backbone modification, wherein the phosphodiester bonds are replaced with phosphorothioates or methylphosphonates. The term "linker" or "linker molecule" refers to a molecule that either links the nucleic acid marker to the non-nucleic acid receptor and thus facilitates detection of an analyte specifically bound by the non-nucleic acid receptor via detecting the nucleic acid marker or that interconnects other linker molecules. The linker molecules according to the present invention are chemically distinct from the non-nucleic acid receptor and the nucleic acid marker and are capable of binding the non-nucleic acid receptor and the nucleic acid marker and/or other, chemically different linker molecules. To achieve formation of a detection complex according to the invention, the linker molecules of the invention are at least bivalent, preferably trivalent, tetravalent, pentavalent, hexavalent or multivalent. In this connection, the term "multivalent" relates to linker molecules that can bind more than 2, preferably more than 3 other molecules. The multiple molecules bound by the linker molecules may be the same or different. For example, a linker molecule may have binding sites for the nucleic acid marker, the non-nucleic acid receptor and/or another, chemically different linker molecule or, alternatively, 2, 3, 4 or more binding sites for one specific binding partner. In the latter case, complex formation is achieved by coupling one or more binding partner(s) to other components of the detection complex, such as the nucleic acid marker, the non-nucleic acid receptor and another, chemically different linker molecule. In this connection, the expression "binding partner" relates to a molecule which is specifically recognized and bound by a linker molecule. The binding partner may thus be a small organic molecule, but can also be any other molecule, such as, for example, a peptide, polypeptide, protein, saccharide, polysaccharide or a lipid or an antigen or hapten. Specific examples for such a pair of linker molecule and binding partner are the streptavidin/biotin and avidin/biotin binding pairs. If the linker molecule is streptavid in/avid in and the binding partner is biotin, the biotin may be coupled to either one or all of the non- nucleic acid receptor, the nucleic acid marker and the second linker molecule to facilitate detection complex formation. The binding of the linker molecule to its binding partner and/or the nucleic acid marker, the non-nucleic acid receptor and/or other, chemically distinct linker molecules is preferably non-covalent. The linker molecules according to the invention may comprise one or more molecules selected from the group consisting of polysaccharides, organic polymers, polypeptides and nucleic acids distinct from the nucleic acid marker. In case the linker molecule according to the invention comprises a nucleic acid distinct from the nucleic acid marker, the linker molecule may further comprise a polysaccharide, organic polymer or polypeptide chemically coupled to the nucleic acid part.
The term "organic polymers", as used herein, refers to polymers of organic molecules, preferably including functional groups such as hydroxy, amino, imino, nitro, cyano, carboxy, carbonyl, carbamid, halo, acylhalo, aldehyde, epoxy, and/or thiol groups. Exemplary polymers are, for example, polyethyleneimines, poly(meth)acrylamides, polyamines, polyamidoamines, polyethyleneglycols, polyethylene, polypropylene, poly(meth)acrylates, polyurethanes, polystyrenes, and polyesters. Preferred are cationic polymers, such as those having amino or imino groups, such as, for example, polyethyleneimines, poly(meth)acrylamides, polyamines, and polyamidoamines. The organic polymers may be linear, branched or dendritic. The term "polysaccharide" refers to molecules consisting of at least two monosaccharides linked by a glycosidic bond and includes disaccharides and oligosaccharides. Exemplary polysaccharides are starch, glycogen, dextran, cellulose and chitin. The polysaccharides according to the invention may be linear, branched or dendritic polysaccharides.
The terms "contacting" or "incubating" as used interchangeably herein refer generally to providing access of one component, reagent, analyte or sample to another. For example, contacting can involve mixing a solution comprising a non-nucleic acid receptor with a sample. The solution comprising one component, reagent, analyte or sample may also comprise another component or reagent, such as dimethyl sulfoxide (DMSO) or a detergent, which facilitates mixing, interaction, uptake, or other physical or chemical phenomenon advantageous to the contact between components, reagents, analytes and/or samples. In one embodiment of the invention, contacting involves adding a solution comprising a non-nucleic acid receptor to a sample utilizing a delivery apparatus, such as a pipette-based device or syringe-based device.
The term "detecting" as used herein refers to any method of verifying the presence of a given molecule. The techniques used to accomplish this may include, but are not limited to, PCR, sequencing, PCR sequencing, molecular beacon technology, Scorpions technology, hybridization, and hybridization followed by PCR. Examples of reagents which might be used for detection include, but are not limited to, radiolabeled and fluorescently oligonucleotide probes and dyes, such as DNA intercalating dyes. The term "detection" as used herein refers to two or more molecules, which have been linked together. The linkage to each other may be covalent or non-covalent. One example of a detection according to the invention is a detection consisting of a non-nucleic acid receptor and a nucleic acid marker, non-covalently linked to each other by means of a first linker molecule. In a particular embodiment, the detection comprises, consists essentially of or consists of a biotinylated DNA molecule coupled via a streptavidin molecule to an analyte- specific biotinylated antibody. Such a detection may be an oligomeric detection, i.e. comprise more than one nucleic acid marker and/or more than one non-nucleic acid receptor and/or more than one first linker molecules. The term "detection complex", as used herein, refers to a complex of one or more non-nucleic acid receptors, one or more nucleic acid markers, one or more linker molecules of a first type, and one or more linker molecules of a second type. In one embodiment, the detection complexes according to the invention may comprise two or more detections as defined above and additionally one or more second linker molecule(s). In one specific embodiment of the invention, such a detection complex according to the invention comprises at least two non- nucleic acid receptors and at least two nucleic acid markers, non-covalently linked to each other by means of at least two first and at least two second linker molecules. In a particular embodiment, the detection comprises, consists essentially of or consists of at least one, for example 2 or more, biotinylated DNA molecule(s) coupled via at least one, preferably two or more, streptavidin molecule(s) and at least one, preferably to or more, biotinylated organic polymer or protein molecules, such as BSA, polyethyleneimines, poly(meth)acrylamides, polyamines, or polyamidoamines, to at least one, preferably two or more, analyte-specific biotinylated antibody/antibodies. In a particular embodiment, the detection complex comprises, consists essentially of or consists of one or more, preferably at least two (bis-)biotinylated DNA marker molecule(s) coupled via one or more, preferably at least two streptavidin molecule(s) and one or more, preferably at least two poly-biotinylated organic polymer(s) or protein(s)/polypeptide(s), such as BSA, polyethyleneimines, poly(meth)acrylamides, polyamines, or polyamidoamines, to one or more, preferably at least two analyte-specific poly- biotinylated antibodies. In this connection, "poly-biotinylated" refers to covalent modification with two or more biotin moieties.
BRIEF DESCRIPTION OF THE FIGURES
Figure 1 : shows the results of the investigation of 3 pan-specific β-amyloid antibodies (6E10, 13-28, 12F4) with different capture antibodies (clones 6-1 -6, 17-4-3, 24-2-3 (all three Probiodrug AG) and clone 2-48 (Synaptic Systems).
1 Detection antibody 6E10, positive control of 300 pg/ml pGlu-A (3-42) peptide (SEQ ID NO: 30),
2 Detection antibody 6E10, negative control
3 Detection antibody 13-28 (BAM 90.1 , Sigma), positive control of 300 pg/ml pGlu-A (3-42) peptide (SEQ ID NO: 30),
4 Detection antibody 13-28, negative control
5 Detection antibody 12F4 (Covance), positive control of 300 pg/ml pGlu-A (3- 42) peptide (SEQ ID NO: 30), 6 Detection antibody 12F4, negative control
Figure 2: shows the recovery plot for high and low concentrations of standard ρΘΙιι-Αβ(3-42) peptide (SEQ ID NO: 30) mixtures used in the validation of the pGlu-A (3-42) peptide (SEQ ID NO: 30).
Figure 3: DemTect Test
Mean values (Mean ± SD) of the results of classification differences in AD patients and healthy subjects (Group I: 18-30 years; Group II: 31 -45 years; Group III: 46-65 years) by DemTect Scale.
Figure 4: Mini-Mental-State Test
Mean values (Mean ± SD) of the results of classification differences in AD patients and healthy subjects (Group I: 18-30 years; Group II: 31 -45 years; Group III: 46-65 years) by Mini-Mental- State Test.
Figure 5: Clock-Drawing Test
Mean values (Mean ± SD) of the results of classification differences in AD patients and healthy subjects (Group I: 18-30 years; Group II: 31 -45 years; Group III: 46-65 years) by Clock- Drawing Test.
DETAILED DESCRIPTION OF THE INVENTION
According to a first aspect of the invention there is provided a highly sensitive method for the detection of an Αβ target peptide in a biological sample, comprising a capture reagent which is specific for said Αβ target peptide; and an Αβ target peptide detection complex, said method comprising the steps of:
a) contacting a biological sample with said capture reagent and said detection complex; and
b) detecting said Αβ target peptide;
wherein the detection complex comprises an Αβ target peptide specific antibody and a nucleic acid marker.
Preferably, said Αβ target peptide is a pGlu-Αβ peptide. Suitably, said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding a pGlu-Αβ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence; and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker.
In a preferred embodiment, the method according to the present invention comprises the steps of: a) contacting the biological sample with the detection complex under conditions allowing the binding of an Αβ target peptide to said detection complex; and b) subsequently contacting said Αβ target peptide, which is bound to the detection complex, with a capture reagent capable of binding an Αβ target peptide under conditions allowing the binding of said capture reagent to said Αβ target peptide.
Suitably, the capture reagent is a capture antibody specific for a pGlu-Αβ peptide.
According to a further preferred aspect of the invention there is provided a method for the detection of a pGlu-Αβ peptide in a biological sample, comprising the steps of:
a) contacting a biological sample with at least one detection complex, wherein said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding an Αβ target peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker; under conditions allowing the binding of said detection complex to said Αβ target peptide;
b) further contacting said Αβ target peptide, which is bound to the detection complex, with a capture antibody capable of binding said Αβ target peptide under conditions allowing the binding of said capture antibody to said Αβ target peptide; and
c) detecting said Αβ target peptide; wherein said Αβ target peptide is a pGlu-Αβ peptide; and wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- Αβ peptide. The data presented herein surprisingly demonstrate that the sensitivity of the detection of pGlu- Αβ peptides in biological samples was significantly increased by the method of invention, i.e. trace amounts down to 4.2 fg/ml of could be detected with high reliability. The limit of quantitation (LOQ) for the detection of pGlu- Αβ peptides could be improved at least 10OOfold compared to existing assay methods in the prior art.
The biological samples concerned by the present invention usually comprise a mixture of different Αβ peptides, fragments or functional derivatives thereof as well as different pGlu- Αβ peptides, fragments or functional derivatives thereof. For example, the biological samples may comprise a mixture of the peptides according to SEQ ID NOs: 1 to 37.
In one embodiment of the method invention, both of the detection antibody and the capture antibody specifically bind to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide. The advantage of this embodiment is that already in the step of (i) contacting a biological sample with at least one detection complex, wherein said detection complex comprises a detection antibody, only pGlu-Αβ peptides, e.g. the pGlu-Αβ peptides of at least one of SEQ ID NOs: 26-37 are bound by the detection antibody. As a result, there is already made a selective enrichment of said pGlu-Αβ peptides in the first step of the method of the invention. This embodiment of the method of the invention is particularly suitable for the detection of pGlu-Αβ peptides, which are comprised in Αβ oligomers.
In an alternative embodiment of the method of the invention, the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide and the detection antibody binds to another epitope sequence of an Αβ peptide. The advantage of this embodiment is that in the step (i) of contacting a biological sample with at least one detection complex, wherein said detection complex comprises a detection antibody, all Αβ peptides, pGlu-Αβ peptides as well as fragments and functional variants thereof, which present in said biological sample, are bound by the detection antibody and are thus enriched in this method step. The highly selective discrimination between Αβ peptides and pGlu-Αβ peptides is then performed in method step ii) of further contacting the Αβ peptide, which is bound to the detection complex, with a capture antibody capable of binding a pGlu-Αβ peptide under conditions allowing the binding of said capture antibody to said pGlu-Αβ peptide. This alternative embodiment is especially advantageous when the pGlu-Αβ peptides are comprised not only in Αβ oligomers, but when the pGlu-Αβ peptides are comprised in the biological samples as free monomers or as monomers bound to proteins contained in the biological samples. This alternative embodiment is particularly advantageous when only one pGlu-Αβ monomer is bound to a protein contained in the biological samples. When both, the detection antibody and the capture antibody specifically bind to the same epitope such as to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide, monomeric pGlu-Αβ peptide bound to the could possibly not detected by the capture antibody, because the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide is already masked or occupied by the detection antibody in the detection complex.
In a further alternative embodiment of the method of the invention, the detection antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide and the capture antibody binds to another epitope sequence of an Αβ peptide. This embodiment is as advantageous as the afore described embodiment for the detection of free or protein-bound monomeric pGlu-Αβ peptide and pGlu-Αβ containing oligomers. The "other epitope sequence" of an Αβ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide, may be a part of the amino acid sequence of a full-length Αβ peptide, such as Αβ (1 -38) of SEQ ID NO: 1 , Αβ (1 -39) of SEQ ID NO: 2, Αβ (1 -40) of SEQ ID NO: 3, Αβ (1 -41 ) of SEQ ID NO: 4, Αβ (1 -42) of SEQ ID NO: 5, and Αβ (1 -43) of SEQ ID NO: 6. The capture antibody and/or the detection antibody, which do not bind to the pyroglutamate carrying amino terminus, may specifically detect the untruncated and/or unmodified N-terminus or C-terminus of an Αβ peptide. Further suitably, the other epitope sequence may be part of the amino acid sequence of one of SEQ ID NOs: 7 to 37.
In a preferred embodiment of the method of the invention, the other epitope sequence of an Αβ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide, is comprised in the core amyloid β sequence of Αβ(1 1 -38) of SEQ ID NO: 19 in the case that pGlu-Αβ peptides starting with the N-terminal pGlu residue at position 3, most preferably the pGlu-Αβ peptides of SEQ ID NOs: 26-31 shall be detected and/or quantified. In a preferred embodiment of the method of the invention, the other epitope sequence of an Αβ peptide, to which the capture antibody and/or the detection antibody binds, when the capture antibody and/or the detection antibody do not bind to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide, is comprised in the core amyloid β sequence of Αβ(15-38) of SEQ ID NO: 25 in the case that pGlu-Αβ peptides starting with the N-terminal pGlu residue at position 1 1 , most preferably the pGlu-Αβ peptides of SEQ ID NOs: 32-37 shall be detected and/or quantified.
Suitably, the other epitope sequence consists of the entire amino acid sequence of an Αβ peptide of one of SEQ ID NOs: 1 to 25. More suitably, other epitope sequence consists of 30, 25, 20 or 15 amino acids of an Αβ peptide of one of SEQ ID NOs: 1 to 25. Most preferably, the other epitope sequence consists of 10, 9, 8, 7, 6, 5, 4 or 3 amino acids of an Αβ peptide of one of SEQ ID NOs: 1 to 25.
Particularly good and reliable results are achieved with the method of the present invention, when the detection complex is provided in a matrix similar to the biological sample. Further suitably, the detection complex comprised in such a matrix similar to the biological sample is added directly to the biological sample. Surprisingly, best results can be obtained when the detection complex is provided in a matrix similar to the biological sample, is added directly to the biological in a ratio < 1 +1 .
The method of the present invention is based on a new and surprising strategy in the assay protocol, which comprises a combined overnight incubation of the biological sample and the addition of the detection complex, which is contained in a matrix similar to the biological sample, directly to the biological sample in a ratio of 1 +0.03. This assay protocol is quite unexpected and unconventional compared to methods used in the prior art, where a typical sample dilution is 1 +1 to 1 +9 and higher. Only this incubation strategy enabled the intended highly sensitive detection of the Αβ target peptide. A further increase in the sensitivity and reliability of the method of the present invention is achieved, when a mixture of different pGlu- Αβ peptides is applied to human CSF or artificial human CSF as a reference substance for quantification. In a preferred embodiment, a 1 +1 mixture of pGlu-A (x-40) and pGlu-A (x-42) is applied to human CSF or artificial human CSF as a reference substance for quantification, wherein x is an integer selected from 3 and 1 1 . Most preferably, a 1 +1 mixture of pGlu-A (3-40) and pGlu-A (3-42) is applied human CSF or artificial human CSF as a reference substance for quantification, when the Αβ target peptide is selected from SEQ ID NOs: 1 to 25. Yet most preferably, a 1 +1 mixture of pGlu-ΑβΟ 1 -40) and pGlu-A (1 1 -42) is applied human CSF or artificial human CSF as a reference substance for quantification, when the Αβ target peptide is selected from SEQ ID NOs: 32-37. Such a use of a mixture of two Αβ target peptides as a reference standard is a new and innovative strategy.
Suitable examples for detection and/or capture antibodies, which do not bind to the pyroglutamate carrying amino terminus of pGlu-Αβ peptides are:
3D6, Epitope:1 -5 (Elan Pharmaceuticals, Innogenetics),
pAb-EL16, Epitope: 1 -7,
2H4, Epitope: 1 -8 (Covance),
1 E1 1 , Epitope: 1 -8 (Covance),
20.1 , Epitope: 1 -10 (Covance, Santa Cruz Biotechnology),
Rabbit Anti-Αβ Polyclonal Antibody, Epitope: 1 -14 (Abeam),
AB10, Epitope: 1 -16 (Chemicon/Upstate - part of Millipore),
82E1 , Epitope: 1 -16 (IBL),
pAb 1 -42, Epitope: 1 -1 1 ,
NAB228, Epitope: 1 -1 1 (Covance, Sigma-Aldrich, Cell Signaling, Santa Cruz
Biotechnology, Zymed/lnvitrogen),
DE2, Epitope: 1 -16 (Chemicon/Upstate - part of Millipore),
DE2B4, Epitope: 1 -17 (Novus Biologicals, Abeam, Accurate, AbD Serotec),
6E10, Epitope: 1 -17 (Signet Covance, Sigma-Aldrich),
10D5, Epitope: 3-7 (Elan Pharmaceuticals),
WO-2, Epitope: 4-10 (The Genetics Company),
1 A3, Epitope 5-9 (Abbiotec),
pAb-EL21 , Epitope 5-1 1 ,
310-03, Epitope 5-16 (Abeam, Santa Cruz Biotechnology),
Chicken Anti-Human Αβ Polyclonal Antibody, Epitope 12-28 (Abeam),
Chicken Anti-Human Αβ Polyclonal Antibody, Epitope 25-35 (Abeam), Rabbit Anti-Human Αβ Polyclonal Antibody, Epitope: N-terminal (ABR),
Rabbit Anti-Human Αβ Polyclonal Antibody (Anaspec),
12C3, Epitope 10-16 (Abbiotec, Santa Cruz Biotechnology),
16C9, Epitope 10-16 (Abbiotec, Santa Cruz Biotechnology),
19B8, Epitope 9-10 (Abbiotec, Santa Cruz Biotechnology),
pAb-EL26, Epitope: 1 1 -26,
BAM90.1 , Epitope: 13-28 (Sigma-Aldrich),
Rabbit Anti-beta-Amyloid (pan) Polyclonal Antibody, Epitope: 15-30 (MBL), 22D12, Epitope: 18-21 (Santa Cruz Biotechnology),
266, Epitope: 16-24 (Elan Pharmaceuticals),
pAb-EL17; Epitope: 15-24,
4G8, Epitope: 17-24 (Covance),
Rabbit Anti-Αβ Polyclonal Antibody, Epitope: 22-35 (Abeam),
G2-10; Epitope: 31 -40 (The Genetics Company),
Rabbit Anti-Αβ, aa 32-40 Polyclonal Antibody (GenScript Corporation),
EP1876Y, Epitope: x-40 (Novus Biologicals),
G2-1 1 , Epitope: 33-42 (The Genetics Company),
16C1 1 , Epitope: 33-42 (Santa Cruz Biotechnology),
21 F12, Epitope: 34-42 (Elan Pharmaceuticals, Innogenetics),
1 A10, Epitope: 35-40 (IBL),
D-17 Goat anti-Αβ antibody, Epitope: C-terminal (Santa Cruz Biotechnology),
2C8, Epitope: 1 -16 (Accurate),
BAM-10, Epitope: 1 -12 (Biotrend, Sigma-Aldrich),
12B2, Epitope: 1 1 -28 (IBL, Biotrend),
6F/3D, Epitope: 8-17 (Accurate),
310-01 , Epitope: 10-16, (Accurate),
1 1 A5-B10, Epitop: 34-40, (Millipore),
12F4, Epitope: 36-42, (Millipore, Covance),
9C4, Epitope: 37-43, (Milipore),
7N22, Epitope: 1 -20, (Biosource),
1 1 A50-B10, Epitope: 35-40) (Covance),
G2-13, Epitope: C-terminus Αβ42 (Genetics Company),
2B9, Epitope: 1 -17 (Santa Cruz), and
9C4, Epitope: 3-8 (Covance). The pGlu-Αβ peptide, which is preferably detected by the method of the invention, is at least one pGlu-Αβ peptide selected from the group consisting of SEQ ID NOs: 26 to 37.
In a preferred embodiment of the invention, said detection antibody and/or said capture antibody is a monoclonal antibody, more preferably a humanized monoclonal antibody. Further preferred according to the invention is a detection antibody and/or a capture antibody, which is a diabody or a single chain antibody which retains the high affinity.
According to one embodiment of the invention, the capture and/or the detection antibody, which specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptides of SEQ ID NOs: 26-31 , is selected from the group consisting of
- pGlu3-A antibody clone 2-48 (monoclonal, mouse); Synaptic Systems,
- pGlu3-A antibody (polyclonal, rabbit); Synaptic Systems, Biotrend, IBL,
- pGlu3-A antibody clone 8E1 (monoclonal, mouse); Anawa,
- pGlu3-A antibody clone 8E1 (monoclonal, mouse); Biotrend,
- Anti-Human Amyloid3 (N3pE) Rabbit IgG (polyclonal, rabbit); IBL,
- Abeta-pE3 rabbit polyclonal, affinity purified, Synaptic systems,
- Anti- Human Αβ N3pE (8E1 ) Mouse IgG Fab (monoclonal, mouse); IBL,
- pGlu3-A3 antibody clone 337.48 (monoclonal, mouse); Biolegend,
- pGlu3-A antibody clone 1 -57 (monoclonal, mouse); Synaptic Systems,
- pGlu3-A antibody clone 70D7 (monoclonal, mouse); Synaptic Systems, and
- oligo pGlu3-A antibody clone 9D5 (monoclonal, mouse); Synaptic Systems.
In a further preferred embodiment of the invention, the capture and/or the detection antibody, specifically binds to the epitope sequence pGlu-FRHDSGC, SEQ ID NO: 38.
In a more preferred embodiment of the invention, the detection and/or the capture antibody is produced by a hybridoma cell line selected from the group consisting of: Αβ 5-5-6 (Deposit No. DSM ACC 2923),
Αβ 6-1 -6 (Deposit No. DSM ACC 2924),
Αβ 17-4-3 (Deposit No. DSM ACC 2925), and
Αβ 24-2-3 (Deposit No. DSM ACC 2926), which are disclosed in WO 2010/009987.
In a most preferred embodiment of the invention, the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 40 or the amino acid sequence of SEQ ID NO: 41 , and the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 42, or the amino acid sequence of SEQ ID NO: 43.
In a further most preferred embodiment of the invention, the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 44 or the amino acid sequence of SEQ ID NO: 45, and the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 46, or the amino acid sequence of SEQ ID NO: 47. In a further most preferred embodiment of the invention, the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 48 or the amino acid sequence of SEQ ID NO: 49, and the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 50, or the amino acid sequence of SEQ ID NO: 51 .
In a further most preferred embodiment of the invention, the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 52 or the amino acid sequence of SEQ ID NO: 53, and the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 54, or the amino acid sequence of SEQ ID NO: 55.
In a preferred embodiment of the invention, the capture and/or the detection antibody, which specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptides of SEQ ID NOs: 32 to 37, is selected from the group consisting of
- pGlul 1 -Αβ antibody clone 173D8, (monoclonal, mouse); Synaptic Systems, and - pGlul 1 -Αβ antibody (polyclonal rabbit); Synaptic Systems.
In a further preferred embodiment of the invention, the capture and/or the detection antibody, specifically binds to the epitope sequence pGlu-VHH, SEQ ID NO: 39. More preferably, said detection antibody and/or said capture antibody is a monoclonal antibody produced by hybridoma cell line Αβ 13-1 1 -6 (Deposit No. DSM ACC 3100), which is disclosed in WO 2012/123562. In a most preferred embodiment of the invention, the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 56 or the amino acid sequence of SEQ ID NO: 57, and the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 58, or the amino acid sequence of SEQ ID NO: 59.
It is further preferred according to invention, that the capture antibody is immobilized on a solid support, and thereafter the detection complex comprising the detection antibody and the analyte binds to the capture antibody, thus forming an insoluble complex. General methods for preparing a detection complex, which is used in the method of the invention, has been described in DE 199 41 756 A1 and EP 2 189 539 A1 , the disclosure of which is incorporated herein in their entirety. In particular, it has been found that by use of detection complexes that consist of, consist essentially of or comprise one or more non-nucleic acid receptors (e.g. an antibody such as a detection antibody), one or more nucleic acid markers, one or more first linker molecules adapted to bind the non-nucleic acid receptor and the nucleic acid marker, and one or more second linker molecules adapted to bind the first linker molecule the performance, in particular the assay sensitivity and the signal-to- background-ratio, of an Immuno-PCR (IPCR) reaction can be significantly improved. According to a further aspect of the invention there is provided a method for the detection of a pGlu-Αβ peptide in a biological sample, comprising the steps of:
i. contacting a biological sample with at least one detection complex, wherein said detection complex consist of, consist essentially of or comprises a detection antibody capable of binding an Αβ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker; and one or more second linker molecules adapted to bind the first linker molecule under conditions allowing the binding of said detection complex to the Αβ peptide; ii. further contacting the Αβ peptide, which is bound to the detection complex, with a capture antibody capable of binding an Αβ peptide under conditions allowing the binding of said capture antibody to said Αβ peptide; and
iii. detecting said pGlu-Αβ peptide;
wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide.
Thus, in one embodiment, the invention relates to detection complexes comprising one or more detection antibody molecules, one or more nucleic acid markers, one or more first linker molecules adapted to bind the non-nucleic acid receptor and the nucleic acid marker, and one or more second linker molecules adapted to bind the first linker molecule. In one specific embodiment of the present invention, the detection complexes comprise a plurality of detection antibody molecules, nucleic acid markers, first linker molecules and second linker molecules. It is desirable to include several detection antibodies with specific binding affinity for a certain Αβ peptide or pGlu-Αβ peptide in the detection complexes according to the invention in order to enhance the affinity for the analyte of choice by means of increased avidity. In turn, it is also desirable to include several nucleic acid markers in the detection complexes, because thus the positive signal, indicating the presence of the analyte in a sample, is enhanced and the signal- to-background ratio improved.
In the detection complexes according to the present invention, the first and second linker molecules serve the purpose to form supramolecular aggregates of the detection antibodies and the nucleic acid markers and thus increase the sensitivity of the complexes as detection reagents in IPCR assays. To achieve the self-assembly of supramolecular networks, the first linker molecules are adapted to bind the detection antibodies, the nucleic acid markers and the second linker molecules.
The supramolecular detection complexes according to the present invention may include 2-50, preferably 5-50 molecules of each the detection antibodies, the nucleic acid markers, the first linker molecules and the second linker molecules. In one embodiment of the invented detection complexes, the complexes include at least 2, preferably 3 or more detection antibody molecules and/or nucleic acid markers. In some embodiments of the invention, the invented detection complexes include about 10-40 nucleic acid marker and first linker molecules, about 5-15 detection antibody molecules and about 5-10 second linker molecules. In accordance with a further embodiment of the present invention, the detection antibody may be an antibody fragment or functional variant of a detection antibody or detection antibody fragment that retains the ability to specifically bind an Αβ peptide or pGlu-Αβ peptide. The detection antibody may be a monoclonal or polyclonal antibody and the antibody fragment may be, for example, a Fab or F(ab')2 fragment, a single chain variable fragment (scFv), an Fv diabody or a linear antibody. The detection antibodies, fragments or functional variants thereof may be biotinylated and thus include one or more biotin or biotin analog moieties. The nucleic acid marker including a predetermined nucleotide sequence may be any nucleic acid, such as, for example, double- or single-stranded DNA, double- or single stranded RNA, or double-stranded hybrids of DNA and RNA. The nucleic acid marker may contain nucleotide analogs, such as those, in which the naturally occurring bases and sugars are replaced by base analogs or sugar analogs or in which the phosphate backbone is substituted by other suitable groups. Suitable modifications have been mentioned above. All afore-mentioned nucleic acid marker molecules may be biotinylated and thus include one or more biotin or biotin analog moieties. One particular example are mono- or bis-biotinylated DNA molecules.
In one embodiment of the invention, the detection complexes are formed by non-covalent interactions between the first linker molecules and the detection antibody and/or the nucleic acid marker. In such an embodiment, the binding of the first linker molecule to the second linker molecule may also be non-covalent.
According to one specific embodiment of the present invention, the binding of the first linker molecule to the detection antibody, the nucleic acid marker and/or the second linker molecule may be facilitated by coupling each the non-nucleic acid receptor, the nucleic acid marker and/or the second linker molecule to one or more, for example 2, 3, 4, 5 or more binding partners of the first linker molecule. These binding partners may be the same or different for the detection antibody, the nucleic acid marker and the second linker molecule. In one embodiment of the invention, these binding partners of the first linker molecule are covalently coupled to the detection antibody, the nucleic acid marker and/or the second linker molecule.
In accordance with one specific embodiment of the present invention, the binding partner of the first linker molecule may be a ligand of the first linker molecule. It is preferred that the first linker molecule is bivalent, trivalent, tetravalent or multivalent for the binding to the binding partner. In one embodiment, the first linker molecule specifically recognizes and binds its binding partner with a high affinity.
In one embodiment of the present invention, the first linker molecule may be avidin or streptavidin or a biotin-binding fragment or mutant thereof.
In a specific embodiment, the binding partner of the first linker molecule is biotin or a biotin analog. The biotin analogs of the present invention preferably retain the ability to specifically bind to avidin, streptavidin or a biotin-binding fragment or mutant thereof.
If the first linker molecule is avidin, streptavidin or a biotin-binding fragment or mutant thereof, the binding of the first linker molecule to the detection antibody, the nucleic acid marker and/or the second linker molecule may be facilitated by coupling the detection antibody, the nucleic acid marker and/or the second linker molecule to biotin or a biotin analog. This coupling may be covalent and either of the detection antibody, the nucleic acid marker and/or the second linker may be coupled to at least 2 biotin or biotin analog molecules.
In an alternative embodiment, the first linker molecule may be a fusion protein or an at least bivalent antibody or antibody-like molecule adapted to simultaneously bind at least two of the detection antibodies, the nucleic acid marker and the second linker molecule.
According to one embodiment of the invention, the second linker molecules may be selected from the group consisting of nucleic acids distinct from the nucleic acid marker, organic polymers, polypeptides and polysaccharides. In one embodiment of the present invention, the second linker molecules comprise at least two, three or four different molecules selected from the group consisting of nucleic acids distinct from the nucleic acid marker, organic polymers, proteins and polysaccharides.
If the second linker molecules consist of, consist essentially of or include organic polymer molecules, these may be selected from the group consisting of cationic polymers, such as linear, branched or dendritic polyethyleneimines, polyacrylamides, polyamines, and polyamidoamines according to one specific embodiment of the present invention.
In case the second linker molecules consist of, consist essentially of or include protein or polypeptide molecules, these may be selected from the group consisting of serum albumines and immunoglobulins or fragments thereof. In one embodiment, the second linker molecule may be BSA. Alternatively, the second linker molecules may be homo-polymers of cationic amino acids, such as poly-lysine, poly-histidine or poly-arginine. In one alternative embodiment of the present invention, the second linker molecules consist of, consist essentially of or include polysaccharides selected from the group consisting of linear, cyclic or branched dextrans.
In still another embodiment of the present invention, the second linker molecules may also consist of, consist essentially of or include nucleic acid molecules distinct from the nucleic acid marker. The nucleic acid molecules may be nucleic acid oligomers, for example, oligonucleotides or nucleic acid polymers, such as polynucleotides. Exemplary nucleic acid oligomers that may be used as second linker molecules consist of two complementary nucleic acid strands, wherein each of these strands is independently adapted to bind to a first linker molecule. In one specific embodiment of the invention, this binding to a first linker molecule is facilitated by covalently coupling each single strand of the nucleic acid oligomer to one first linker molecule, with the result that each of these two strands is independently coupled to a first linker molecule by a covalent bond. Another alternative embodiment may be a polynucleotide adapted to bind one or more first linker molecules.
In one embodiment of the present invention, the second linker molecules may also be a heterogeneous mixture of the above specified molecules. According to one embodiment of the present invention, the second linker molecules thus include two or more different molecules selected from the group consisting of linear, branched or dendritic polyethyleneimines, polyacrylamides, polyamines, polyamidoamines, homo-polymers of cationic amino acids, such as poly-lysine, serum albumines, immunoglobulins or fragments thereof, linear, cyclic or branched dextrans, poly- and oligonucleotides. In one specific embodiment of the present invention, the second linker molecules include nucleic acid oligomers consisting of two complementary nucleic acid strands, wherein each of these strands is independently adapted to bind to a first linker molecule, optionally be forming a covalent bond, and organic polymers, such as polyethyleneimines, polypeptides, such as albumines or immunoglobulins, polysaccharides and/or polynucleotides distinct from the nucleic acid oligomers and the nucleic acid marker. All afore-mentioned second linker molecules may be coupled to one or more biotin or biotin analog molecules. Specific examples of second linker molecules according to the invention are polybiotinylated BSA, polybiotinylated polyethyleneimine, polybiotinylated poly(meth)acrylamide, polybiotinylated polyamine, or polybiotinylated polyamidoamine.
In one embodiment of the present invention, the detection complexes of the invention may further include one or more modulators adapted to bind to the first linker molecules. These modulators are used to saturate non-occupied binding sites of the first linker molecule for the detection antibody, the nucleic acid marker, the second linker molecule and/or a binding partner of the first linker molecule. In order to avoid that the modulators compete with the binding of the detection antibody, the nucleic acid marker, the second linker molecule and/or a binding partner of the first linker molecule coupled to the detection antibody, the nucleic acid marker and/or the second linker molecule, the modulator is preferably added after formation of a detection complex from the detection antibody, the nucleic acid marker, the first and the second linker molecule. The modulators may be positively charged and may be selected from the group consisting of amino-biotin, diamino-biotin and amino-substituted biotin analogs.
In a further aspect, the present invention relates to methods for the preparation of the above detection complexes. In one embodiment, such a method for the preparation of a detection complex according to the invention includes the steps of:
(a) contacting one or more nucleic acid markers with one or more first linker molecules adapted to bind nucleic acid markers and detection antibodies to form a complex of one or more nucleic acid markers with one or more first linker molecules;
(b) contacting the complex of step (a) with one or more detection antibodies to form a complex of one or more detection antibodies, one or more nucleic acid markers and one or more first linker molecules; and
(c) contacting the complex of step (b) with one or more second linker molecules adapted to bind the first linker molecules to form a complex of one or more detection antibodies, one or more nucleic acid markers, one or more first linker molecules and one or more second linker molecules.
This method may optionally further include the step of:
(d) contacting the complex of step (c) with one or more modulators adapted to bind to the first linker molecules to saturate non-occupied binding sites of the first linker molecule for the detection antibody, the nucleic acid marker and the second linker molecule to form a complex of one or more detection antibodies, one or more nucleic acid markers, one or more first linker molecules, one or more second linker molecules and one or more modulators.
In another embodiment, the invention encompasses a method for the preparation of a detection complex including:
(i) one or more detection antibodies capable of specifically binding an Αβ peptide and/or a pGlu-Αβ peptide;
(ii) one or more nucleic acid markers including a predetermined nucleotide sequence;
(iii) one or more first linker molecules adapted to bind the detection antibody and the nucleic acid marker;
(iv) one or more nucleic acid oligomers adapted to bind the first linker molecules, wherein the one or more nucleic acid oligomers comprise two complementary nucleic acid strands distinct from the nucleic acid marker; and
(v) one or more organic polymers, polynucleotides distinct from the nucleic acid marker and the one or more nucleic acid oligomers, polypeptides or polysaccharides adapted to bind the first linker molecules;
wherein the method comprises the steps of:
(a) contacting one nucleic acid strand of the one or more nucleic acid oligomers with one or more first linker molecules to form a first detection of one or more first linker molecules and one nucleic acid strand of the one or more nucleic acid oligomers;
(b) contacting the nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) with one or more first linker molecules to form a second detection of one or more first linker molecules and one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a);
(c) contacting the detection of step (a) with one or more nucleic acid markers to form a first complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers and one or more nucleic acid markers;
(d) contacting the detection of step (b) with one or more detection antibodies to form a second complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) and (c) and one or more detection antibodies;
(e) contacting the first complex of step (c) with one or more organic polymers, polynucleotides, polypeptides or polysaccharides, to form a third complex of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers, one or more nucleic acid markers and one or more organic polymers, polynucleotides, polypeptides or polysaccharides; and
(f) contacting the second complex of step (d) with the third complex of step (e) to form a complex detection of one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers, one or more nucleic acid markers, one or more organic polymers, polynucleotides, polypeptides or polysaccharides, one or more first linker molecules detectiond to one nucleic acid strand of the one or more nucleic acid oligomers complementary to that used in step (a) and (c) and one or more detection antibodies.
In one embodiment of the invention, this method may further include the step of contacting the complexes of steps (d) and (e) with one or more modulators adapted to bind to the first linker molecule before step (f).
In the methods of the invention, the detection antibody, the nucleic acid marker, the first linker molecule, the second linker molecule and the modulator may be as defined above. In particular, the binding of the detection antibody, the nucleic acid marker and the second linker molecule to the first linker molecule may be facilitated by one or more binding partner(s) of the first linker molecule coupled to the detection antibody, the nucleic acid marker and the second linker molecule. In one embodiment, these binding partners are biotin and/or a biotin analog and the first linker molecule is streptavidin, avidin or a biotin-binding fragment thereof.
Also encompassed by the present invention are the detection complexes obtainable by the invented methods. In another aspect, the invention is also directed to the use of the detection complex according to the invention in an immunoassay for the detection or the determination of the amount of a pGlu-Αβ peptide. Said pGlu-Αβ peptide may be as defined above and is specifically recognized and bound by the detection antibody. The immunoassay may include a nucleic acid amplification reaction to amplify the nucleic acid marker. The amplification reaction is preferably a polymerase chain reaction (PCR), more preferably a real-time PCR reaction.
In still another aspect, the invention features a method for detecting a pGlu-Αβ peptide in a sample, wherein the method includes the steps of:
(a) contacting a detection complex according to the invention comprising one or more detection antibodies capable of specifically binding said pGlu-Αβ peptide with said sample to form a complex of said analyte and said detection complex;
(b) specifically detecting the presence of the one or more nucleic acid markers in said complex; wherein the presence of the one or more nucleic acid markers indicates the presence of the pGlu-Αβ peptide in said sample.
In one embodiment of the present invention, the detecting step (b) may comprise amplifying the one or more nucleic acid markers in a PCR reaction, preferably a real time PCR reaction.
In one embodiment, the detection of the pGlu-Αβ peptide includes the determination of the amount of the pGlu-Αβ peptide, that is a quantitative determination of the pGlu-Αβ peptide.
Detection and, in a specific embodiment, also quantitation of the pGlu-Αβ peptide may be achieved by detection and, optionally, quantitation of the number of amplicons generated in the PCR reaction using the nucleic acid marker as a template. Detection and, optionally quantitation may be achieved by using nucleic acid probes labeled with a detectable label or suitable dyes. In one embodiment of the invention, the nucleic acid marker is detected by real time PCR, carried out in a commercially available instrument. Real-time PCR amplification is performed in the presence of a fluorescent-labelled probe which specifically binds to the amplified PCR product, for example a dual labelled primer including a fluorescent moiety quenched by another label which is in spatial proximity to the fluorescent label as long as the primer is not incorporated in an amplification product and separated from each other due to elongation of the primer during amplification.
In another embodiment, a non-primer detectable probe which specifically binds the PCR amplification product is used. The probe may include a covalently bonded reporter dye at the 5'-end and a downstream quencher dye at the 3'-end, which allows fluorescent resonance energy transfer (FRET).
Detection of the amplified PCR product may be carried out after each amplification cycle, as the amount of PCR product is at every stage of the amplification reaction proportional to the initial number of template copies. The number of template copies can be calculated by means of the detected fluorescence of the reporter dye. In an intact probe the fluorescence is quenched due to the close proximity of the reporter dye and quencher dye. During PCR, the nuclease activity of the DNA polymerase cleaves the probe in the 5'-3' direction and thus separates the reporter dye from the quencher dye. Because reporter and quencher dye are then no longer in close proximity to each other, the fluorescence of the reporter dye is increased. The increase in fluorescence is measured and is directly proportional to the amplification during PCR. See Heid et al. (1996), "Real time quantitative PCR" Genome Research 6(10):986-994 . This detection system is now commercially available as the TaqMan.RTM PCR system from Perkin-Elmer, which allows real time PCR detection.
In an alternative embodiment, the reporter dye and quencher dye may be located on two separate probes which hybridize to the amplified PCR detector molecule in adjacent locations sufficiently close to allow the quencher dye to quench the fluorescence signal of the reporter dye ( Rasmussen et al. (1998), "Quantitative PCR by continuous fluorescence monitoring of a double strand DNA specific binding dye" Biochemica 2:8-15 ). As with the detection system described above, the 5'-3' nuclease activity of the polymerase cleaves the one dye from me probe containing it, separating the reporter dye from the quencher dye located on the adjacent probe preventing quenching of the reporter dye. As in the embodiment described above, detection of the PCR product is by measurement of the increase in fluorescence of the reporter dye.
In other embodiments of this invention, other real time PCR detection strategies may be used, including known techniques such as intercalating dyes (ethidium bromide) and other double stranded DNA binding dyes used for detection (e.g. SYBR green, FMC Bioproducts), dual fluorescent probes ( Wittwer et al. (1977) BioTechniques 22: 130-138 and Wittwer et al. (1997) BioTechniques 22: 176-181 ) and panhandle fluorescent probes (i.e. molecular beacons; Tyagi and Kramer (1996) Nature Biotechnology 14: 303-308 ). Although intercalating dyes and double stranded DNA binding dyes permit quantitation of PCR product accumulation in real time applications, they suffer from a lack of specificity, detecting primer dimer and any nonspecific amplification product. Careful sample preparation and handling, as well as careful primer design, using known techniques are necessary to minimize the presence of matrix and contaminant DNA and to prevent primer dimer formation. Appropriate PCR instrument analysis software and melting temperature analysis permit a means to extract specificity ( Ririe, K., et al. (1977) Anal. Biochem. 245: 154-160 ) and may be used with these embodiments.
In still another embodiment of this invention, the Scorpions reaction is used as a real time PCR detection method. Scorpions are bi-functional molecules containing a PCR primer covalently linked to a probe. The fluorophore in the probe interacts with a quencher which reduces fluorescence. During the PCR reaction the primer binds to the template and is elongated by the polymerase. Once the elongation reaction is completed and primer and template are separated in the denaturation step, the elongated primer sequence can interact intramolecularly with the probe sequence in the next annealing step. The binding of the probe to the elongated primer sequence prevents interaction of the probe-bound fluorophore with the quencher, which leads to an increase in light output from the reaction tube. Currently, there are two formats for Scorpions, the bimolecular Scorpion format and the unimolecular format. In the bimolecular format the quencher is bound to a separate nucleic acid molecule which is complementary to the probe sequence, whereas in the unimolecular format both, fluorophore and quencher, are attached to the same molecule, and an integral stem loop sequence is used to bring the quencher close to the fluorophore.
The Scorpions technique is described more fully in Whitcombe et al. (1999), Detection of PCR products using self-probing amplicons and fluorescence, Nature Biotech 17, pages 804-807 . This detection system is now commercially available as the scorpions system from DxS Ltd. (Manchester, UK).
The design of primers for the amplification reaction and nucleic acid probes is well-established in the art and thus routine practice for the skilled person. Suitable fluorescent reporter dyes are also known and commercially available, and include, without limitation 6-carboxy- fluorescein (FAM), tetrachloro-6-carboxy-fluorescein (TET), 2,7-dimethoxy-4,5-dichloro-6- carboxy-fluorescein (JOE) and hexachloro-6-carboxy-fluorescein (HEX). Another suitable reporter dye is 6-carboxy-tetramethylrhodamine (TAMRA).
In another aspect, the invention relates to a kit i.e., a packaged combination of reagents in predetermined amounts with instructions for performing the detection method or the diagnostic method of the invention. Such a kit comprises one or more detection complexes according to the invention or manufactured according to the methods of the invention. Such a kit may additionally contain further components. Exemplary components that may be additionally comprised in the kits of the present invention include, but are not limited to stabilizers, buffers (e.g. a block buffer or lysis buffer), dyes, oligonucleotide primers or probes, which may be optionally labelled with a detectable label, etc. The components of the detection complexes according to the invention may be as defined above.
Furthermore, the antibodies used in the methods of the present invention can also be provided in the kit.
The relative amounts of the various reagents may be varied widely to provide for concentrations in solution of the reagents which substantially optimize the sensitivity of the assay. Particularly, the reagents may be provided as dry powders, usually lyophilized, including excipients which on dissolution will provide a reagent solution having the appropriate concentration.
According to a further aspect of the invention, there is provided a kit for diagnosing a neurodegenerative disorder, such as Alzheimer's disease which comprises detection complexes according to the invention or manufactured according to the methods of the invention, at least one capture antibody and instructions for use. In one embodiment, the kit additionally comprises at least one capture antibody that specifically binds to the pyroglutamate carrying amino terminus of said pGlu-Αβ peptide. In still another aspect, the invention is also directed to the use of one or more organic polymer, polypeptide, polysaccharide and/or oligo- or polynucleotide molecules, all of which may be optionally biotinylated, as additional linker molecules in a detection comprising one or more non-nucleic acid receptors, one or more nucleic acid markers and one or more first linker molecules to form a detection complex comprising one or more non-nucleic acid receptors, one or more nucleic acid markers, one or more first linker molecules and one or more organic polymer, polypeptide, polysaccharide and/or oligo- or polynucleotide molecules.
The biological sample may be any sample, for example from a human. In one specific example, the sample is a tissue sample, a body fluid sample or a cell sample. In one embodiment, the biological sample is selected from the group consisting of blood, serum, urine, cerebrospinal fluid (CSF), plasma, lymph, saliva, sweat, pleural fluid, synovial fluid, tear fluid, bile and pancreas secretion. In a further embodiment, the biological sample is plasma. In a preferred embodiment, the biological sample is CSF.
The biological sample can be obtained from a patient in a manner well-known to a person skilled in the art. In particular, a blood sample can be obtained from a subject and the blood sample can be separated into serum and plasma by conventional methods. The subject, from which the biological sample is obtained is preferably a subject suspected of being afflicted with Alzheimer's disease, at risk of developing Alzheimer's disease and/or being at risk of or having any other kind of dementia. In particular, the sample is obtained from a subject suspected of having Mild Cognitive Impairment (MCI) and/or being in the early stages of Alzheimer's disease. The invention further relates to the use of the method for the detection of a pGlu-Αβ peptide according to the present invention in a method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment.
In particular, the invention provides a method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment, which comprises determining the level of a pGlu-Αβ peptide in a biological sample from a subject, comprising the following steps:
i. determining a first level of a pGlu-Αβ peptide in a biological sample from a subject suspected to be afflicted with said neurodegenerative disease with a method for the detection of a pGlu-Αβ peptide according to the present invention; ii. comparing the first level of the pGlu-A Αβ peptide with a second level of said pGlu- Αβ peptide in a healthy control subject; and
iii. diagnosing the subject with a neurodegenerative disease where the level of said pGlu-Αβ peptide in said biological sample is increased compared to the level of said pGlu-Αβ peptide in the healthy control subject. In a further embodiment, the invention provides a method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprising determining the level of a pGlu-Αβ peptide in a biological sample from a subject with a method for the detection of a pGlu-Αβ peptide according to the present invention.
In a particular embodiment, said method of diagnosing or said method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprises the determination of the level of a pGlu-Αβ peptide in a biological sample taken on two or more occasions from a subject.
In one embodiment, the biological sample will be taken on two or more occasions from a test subject. In a further embodiment, the method additionally comprises comparing the level of the pGlu-Αβ peptides present in biological samples taken on two or more occasions from a test subject. In one embodiment, the method additionally comprises comparing the level of the pGlu-Αβ peptides present in a test sample with the amount present in one or more sample(s) taken from said subject prior to commencement of therapy, and/or one or more samples taken from said subject at an earlier stage of therapy. In one embodiment, the method additionally comprises comparing the level of the pGlu-Αβ peptides with one or more controls.
In a further embodiment, said method of diagnosing or said method of monitoring the efficacy of a therapy in a subject further comprises a step, wherein the state of the neurodegenerative disease of the subjects that are donors of the biological samples is characterized in one or more psychometric tests. Suitable psychometric tests for characterization of the state of the neurodegenerative disease of a subject are selected from the DemTect Test, Mini-Mental- State Test, Clock-Drawing Test, ADAS-Cog, Blessed Test, CANTAB, Cognistat, NPI, BEHAVE-AD, CERAD, CSDD, GDS and The 7 Minute Screen.
Suitable treatments of neurodegenerative diseases, such as Alzheimer's diseases and/or Mild Cognitive Impairment, the efficacy of which can be monitored with the methods of the present invention, are treatments that inhibit the formation of the pGlu-residue at the N-terminus of N- terminally truncated Αβ peptides. Particularly suitable treatments in this regard are inhibitors of the enzyme glutaminyl cyclase. Glutaminyl cyclase has been shown to catalyse the formation of pGlu at the N-terminus of peptides not only from a glutamine residue, but also from a glutamate residue. Accordingly, glutminyl cyclase is responsible for the posttranslational formation of glutamate residues at position 3 or 1 1 of Αβ peptide to pGlu.
Suitable glutaminyl cyclase inhibitors for the treatment of neurodegenerative diseases, such as Alzheimer's diseases and/or Mild Cognitive Impairment, are for example disclosed in WO 2005/075436, WO 2008/055945, WO 2008/055947, WO 2008/055950, WO2008/065141 , WO 2008/1 10523, WO 2008/128981 , WO 2008/128982, WO 2008/128983, WO 2008/128984, WO 2008/128985, WO 2008/128986, WO 2008/128987, WO 2010/026212, WO 2010/012828, WO 201 1/107530, WO 201 1/1 10613, WO 201 1/131748, WO 2012/123563 and WO 2014/140279. Further suitable treatments of neurodegenerative diseases, such as Alzheimer's diseases and/or Mild Cognitive Impairment, are antibodies, preferably beta-amyloid antibodies, more preferably antibodies that specifically recognize pGlu-Αβ peptides. Suitable pGlu-Αβ antibodies are for example disclosed in WO 2010/009987, WO 2012/123562, US 7 122 374 81 , WO 201 1 /151076, WO 2012/021469; WO 2012/136552 and WO 2010/129276. In a preferred embodiment, the invention provides a method for monitoring the efficacy of inhibitors of glutaminyl cyclase and/or beta-amyloid antibodies, most preferably antibodies that specifically recognize pGlu-Αβ peptides, in the treatment of neurodegenerative diseases, such as Alzheimer's diseases and/or Mild Cognitive Impairment. The present method of diagnosis has several advantages over the methods known in the art, i.e. the method of the present invention can be used to detect Alzheimer's disease at an early stage and to differentiate between Alzheimer's disease and other types of dementia in early stages of disease development and progression. One possible early stage is Mild Cognitive Impairment (MCI). It is impossible with the methods currently known in the art to make a clear and reliable diagnosis of early stages of Alzheimer's disease and, in particular, it is impossible to differentiate between the onset of Alzheimer's disease and other forms of dementia in said early stages. This especially applies for patients afflicted with MCI.
In contrast, the methods provided by the present invention are suitable for a differential diagnosis of Alzheimer's disease. In particular, the present invention provides a diagnostic method, wherein the level of pGlu-Αβ peptides can be detected in biological samples obtained from any of the above described subjects in a highly sensitive and reproducible manner. The high sensitivity of the methods of the present invention is achieved by using the detection complex of the invention, the antibodies that are highly specific for the detection of pGlu-Αβ peptides; and the immune-PCR method for the detection and/or quantification of pGlu-Αβ peptides. With the method of the present invention, it is for the first time possible to detect trace amounts or very low amounts of pGlu-Αβ peptides, i.e. down to 4.2 fg/ml, in biological samples such as plasma or CSF. The invention provides a method for the detection of pGlu-Αβ peptides, which is highly sensitive, independently from whether the pGlu-Αβ peptides are present as monomers, in oligomers or bound to proteins in the sample. It is especially possible to detect the occurrence of pGlu-Αβ peptides in a biological sample already closely to or even prior to the onset of Alzheimer's diseases.
The method of the present invention makes it possible for the first time to detect and quantify pGlu-Αβ peptides, in particular those of SEQ ID NOs: 26-37, preferably of SEQ ID NOs: 26-31 and even preferably of SEQ ID NOs: 32-37; or fragments or functional variants thereof, in a highly sensitive manner. In particular, the present invention provides pGlu-Αβ peptides as a biomarker biological fluids, such as plasma or CSF, which is suitable for a differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease.
Therefore, in one embodiment, the invention is directed to the use of the method of determining pGlu-Αβ peptides for the diagnosis of Alzheimer's disease, such as the differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease. Suitably, the early stage of Alzheimer's disease is Mild Cognitive impairment.
In a further embodiment, the invention is directed to the use of the pGlu-Αβ peptides for the diagnosis of Alzheimer's diseases, such as the differential diagnosis of Alzheimer's disease, in particular in the early stages of the disease. Suitably, the early stage of Alzheimer's disease is Mild Cognitive impairment.
In particular, the pGlu-Αβ peptides, which shall be used for diagnosis of Alzheimer's disease, are detected and quantified with a method according to the present invention.
DEPOSITS OF BIOLOGICAL MATERIAL The monoclonal antibodies expressing hybridoma cell lines 5-5-6, 6-1 -6, 17-4-3, and 24-2-3 have been deposited in accordance with the Budapest Treaty and are available at the Deutsche Sammlung fur Mikroorganismen und Zellkulturen (German Collection of Microorganisms and Cell Cultures) GmbH, DSMZ, Inhoffenstrasse 7B, 38124 Braunschweig, Germany, with a deposit date of June 17, 2008, and with the respective deposit numbers:
(clone 5-5-6): DSM ACC2923
(clone 6-1 -6): DSM ACC2924
(clone 17-4-3): DSM ACC2925
(clone 24-2-3): DSM ACC2926.
The monoclonal antibody expressing hybridoma cell line 13-1 1 -6 has been deposited in accordance with the Budapest Treaty and is available at the Deutsche Sammlung fur Mikroorganismen und Zellkulturen (German Collection of Microorganisms and Cell Cultures) GmbH, DSMZ, Inhoffenstrasse 7B, 38124 Braunschweig, Germany, with a deposit date of December 14, 2010, and with the deposit number:
(clone 13-1 1 -6): DSM ACC 3100. The present invention is further described by the following examples, which should however by no means be construed to limit the invention in any way; the invention is defined in its scope only by the claims as enclosed herewith.
EXAMPLES OF THE INVENTION
Example 1 : Highly sensitive detection of pGlu-Αβ peptide
Microplate modules (Chimera biotec C-001 ) were coated with 30 μΙ/well capture antibody (clone 6, 17 or 24, probiodrug) at a concentration of 5 μg ml in coating buffer (Chimera biotec C-010). Coating was carried out overnight at 4°C. Subsequently, coated modules were washed with wash buffer A (Chimera Biotec, C-01 1 ). All washing steps were carried out according to wash buffer manufacturer's instructions. The washed modules were incubated with 30 μΙ/well sample material, consisting of artificial CSF (Chimera biotec,) spiked with pGlu-Αβ (3-40) or (3-42) (Probiodrug), at different concentration levels and diluted 1 +9 in sample dilution buffer (SDB-9100, Chimera Biotec). Incubation was carried out for 45 min at room temperature, followed by a washing step with wash buffer B (Chimera Biotec, C-012). Subsequently, wells were incubated with 30μΙ/ννβΙΙ biotinylated detection antibody (clone 17 or clone 24, Probiodrug) in a concentration of 0.2 μg ml in antibody dilution buffer (SDB-6000, Chimera Biotec). Incubation was carried out for 45 min at room temperature, followed by a washing step with wash buffer B. Subsequently, wells were incubated with 30μΙ/ννβΙΙ CHI-BIO biotin-binding detection conjugate containing DNA-marker (Chimera biotec,), applied in 1 :200 dilution in conjugate dilution buffer (CDB-b, Chimera biotec) for 30 min at room temperature. Following a final washing step with buffer B and buffer A, 30 μΙ/well PCR-mastermix (Chimera Biotec, C- 022) corresponding to the DNA-marker in CHI-BIO are added to each well. The microplate is sealed with PCR-foil (Chimera biotec, C-069) and DNA-amplification & data read-out is carried out according to manufacturer's instructions by application of an Imperacer® workstation (Chimera Biotec 25-002).
Results
Table 1 : Quantification of pGlu-Ap(3-40) with capture antibody clone 17 or clone 24
Calculated cone
nominal [pg/ml] %RE
Capture:
[pg/ml] Clone 17 Clone 24 Clone 17 Clone 24
100000 1 12278.5 102939.9 12 3
10000 9516.6 9619.4 5 4
1000 1075.8 1 169.0 8 17
100 33.3 77.7 67 22
10 51 .1 10.5 41 1 5
Table 2: Quantification of pGlu-A (3-42) with capture antibody clone 6
Figure imgf000052_0001
Example 2: Application of an Antibody - DNA detection complex for the detection of pGlu-Αβ peptides in a biological sample
Microplate modules (Chimera biotec C-001 ) were coated with 30 μΙ/well capture antibody (clone 24, Probiodrug) at a concentration of 5 μg ml in coating buffer (Chimera biotec C-010). Coating was carried out overnight at 4°C. Subsequently, coated modules were washed with wash buffer A (Chimera Biotec, C-01 1 ). All washing steps were carried out according to wash buffer manufacturer's instructions. The washed modules were incubated with 30 μΙ/well sample material, consisting of artificial CSF (Chimera biotec) spiked with pGlu-Αβ (1 +1 mixture of 40 & 42, Probiodrug) at different concentration levels as reference standards and individual CSF for analysis. The sample material was additionally mixed 1 +0.03 (one part sample + 0.03 part reagent) with an antibody-DNA detection complex (CH I-pGlu, Chimera Biotec,, synthesized from clone 17-24, Probiodrug) at sub μg ml in artificial CSF (Chimera biotec). Pre-incubation of samples and detection complex was carried out overnight at 4<C in vials previous to incubation on capture-coated modules; subsequent incubation on capture-coated wells was carried out for 60 min at room temperature, respectively. Following a final washing step with buffer B and buffer A, 30 μΙ/well PCR-mastermix (Chimera Biotec, C-022) corresponding to the DNA-marker in CHI-BIO are added to each well. The microplate is sealed with PCR-foil (Chimera biotec, C-069) and DNA-amplification & data read-out is carried out according to manufacturer's instructions by application of an Imperacer® workstation (Chimera Biotec 25- 002). Results:
Table 3: Standards
Figure imgf000053_0001
Table 4: Individuals
Figure imgf000053_0002
Example 4: Detection of pGlu3-A peptides with pan-specific anti-p-amyloid antibodies
The assay protocol of example 3 was repeated with the following modifications:
a) pan-specific antibodies 6E10, BAM90.1 (epitope aa 13-28) or 12F4(specific for Αβ42 C-terminus) were used as detection antibodies in the detection antibody-DNA- conjugate (ADC); and b) ρΘΙιι3-Αβ peptide specific monoclonal antibody clone 6-1 -6, clone 17-4-3 or clone 24- 2-3 were used as capture antibody for coating the microplate modules.
The preparation of the antibody-DNA-conjugate (ADC) and the detection of pGlu3-A 40 and pGlu3-A 42 was performed as described in examples 1 , 2 and 3.
300 pg/ml of pGlu3-A 40 and pGlu3-A 42 peptides were detected in the analyzed CSF samples. Antibody clone 6E10 as detection antibody revealed best performance with pGlu3- Αβ peptide specific monoclonal antibody clone 6-1 -6 or clone 24-2-3 as capture antibody (see Figure 1 ).
Example 4: Preparation of Antibody - DNA detection complexes for detection of pGlu- Αβ peptides
30 μΙ of a 2.1 1 pmol/ml solution of 169 bp bis-biotinylated DNA (DNA-marker "1 " (SEQ ID NO: 60); 63.3. pmol) were incubated for 30 min at RT with 3.24 μΙ of a 19.5 pmol/μΙ solution of recombinant STV (streptavidin, IBA) to form a STV-DNA conjugate ("SDC"). 30 μΙ of this SDC were mixed with 30 μΙ of a 500 μg ml solution of a biotinylated anti-pGlu3-A detection antibody selected from clones 6, 17 and 24 and incubated for 60 min at RT /orbital shaking. The antibody-DNA-STV conjugate was purified by FPLC (Superdex 200) and the 1 ml product fraction was mixed with 2 ml NaCI solution (300 mM) for a final solution of 10.5 pmol/ml detection antibody-DNA-conjugate ("ADC") (cf. Niemeyer et al., (1999). Nucleic Acids Res 27(23): 4553-61 ).
Example 5: Validation of the pGlu-Αβ assay
Standard curve and quality controls (QCs) samples with concentrations of pGlu3-A (40/42) of SEQ ID NOs: 28 and 30 were prepared and evaluated according to Table 5. The "low series" contained pGlu3-A (40/42) SEQ ID NOs: 28 and 30 in the range from 4.2 fg/ml up to 9 pg/ml in artificial human CFS. The "high series" contained pGlu3-A (40/42) SEQ ID NOs: 28 and 30 in the range from 78 fg/ml up to 27 pg/ml in artificial human CSF. The artificial human CSF consists of:
125 mM
KCI: 2.5 mM MgCI x 6 H20: 1 mM
NaH2P04: 1 .25 mM
CaCI2 x 2 H20 2.0 mM
NaHC03: 25 mM
Glucose: 25 mM
pH adjusted with NaOH to 7.3
Human serum albumine: 0.3 g/l
Detection of pGlu3-A (40/42) of SEQ ID NOs: 28 and 30 was performed as described in Example 3.
Acceptance criteria for precision (%CV) and accuracy (%RE) for different series ("high" and "low") of standards and QCs were <20% for the lower limit of quantitation (LLOQ) and <25% for the upper limit of quantitation (ULOQ).
Figure 2 shows the recovery plot for high and low concentration of standards. It can be seen from Figure 2 that the developed method allows the detection and quantitation of pGlu-Αβ peptides over a broad linear range of the calibration curve with high precision and accuracy. The method is very sensitive and allows the quantitation of pGlu-Αβ peptides down to 4.2 fg/ml.
Table 5: Inter-Assay Average: Precision (%CV) and Accuracy (%RE) for "high" and "low" standards and QCs
Figure imgf000056_0001
Example 5: Determination of pGlu3-Ap40 (SEQ ID NO: 28) and pGlu3-A 42 (SEQ ID NO: 30) in CSF samples
CSF samples were obtained from patients with a clinical diagnosis of AD and healthy controls according to standard procedures. A standard curve and quality control samples (QCs) were generated and used as described in Example 5. Acceptance criteria for precision (%CV) and accuracy (%RE) for the CSF samples and QCs were <20% for the lower limit of quantitation (LLOQ) and <25% for the upper limit of quantitation (ULOQ). Individual CSF samples (see sample # in Table 6) were measured as described in Example 3. The pGlu3-A concentration was calculated based on the standard curve.
Table 6 shows the results of the quantitation of pGlu3-A 40 (SEQ ID NO: 28) and pGlu3- Αβ42) (SEQ ID NO: 30). The values for the pGlu-Αβ concentration represent the concentration of pGlu3-A 40 (SEQ ID NO: 28) and pGlu3-Ap42 (SEQ ID NO: 30) as a sum parameter.
Table 6: Analyzed sample concentration (pGlu3-A 40 (SEQ ID NO: 28) and pGlu3- Αβ42 (SEQ ID NO: 30) in pg/ml) and precision (%CV)
Figure imgf000057_0001
The precision (%CV) is used as an acceptance criterion for biomarkers. The precision threshold for a biomarker to accepted is %CV <30%. The results in Table 6 show that the precision (%CV) in all measurements was <30% and therefore meet the precision acceptance criterion for biomarkers. Example 7: Psychometric tests for identification of subjects suffering from a neurodegenerative disease
7.1 Materials and Methods
7.1 .1 Patients and healthy controls
Patients with a clinical diagnosis of AD and healthy controls were recruited through a CRO. In a prestudy examination the neuropsychological functions of all participants of the study were tested by several psychometric tests (DemTect, Mini-Mental-State Test, Clock-drawing test). DemTect Test
The DemTect scale is a brief screening for dementia comprising five short subtests (10-word list repetition, number transcoding, semantic word fluency task, backward digit span, delayed word list recall) (Kessler et at., 2000). The raw scores are transformed to give age- and education-independent scores, classified as 'suspected dementia' (score < 8), 'mild cognitive impairment' (score 9 - 12), and 'appropriate for age' (score 13 - 18).
MMSE
The Mini-Mental State Examination (MMSE) or Folstein test is a brief 30-point questionnaire test that is used to assess cognition (see Table 4). It is commonly used in medicine to screen for dementia. In the time span of about 10 minutes it samples various functions including arithmetic, memory and orientation. It was introduced by Folstein et at., 1975, and is widely used with small modifications.
The MMSE includes simple questions and problems in a number of areas: the time and place of the test, repeating lists of words arithmetic, language use and comprehension, and basic motor skills. For example, one question asks to copy drawing of two pentagons (see next table). Any score over 27 (out of 30) is effectively normal. Below this, 20 -26 indicates mild dementia; 10 -19 moderate dementia, and below 10 severe dementia. The normal value is also corrected for degree of schooling and age. Low to very low scores correlate closely with the presence of dementia, although other mental disorders can also lead to abnormal findings on MMST testing.
Clock-Drawing Test
Scoring of the clocks was based on a modification of the scale used by Shulmann et at., 1986. All circles were pre-drawn and the instruction to subjects was to "set the time 10 after 1 1 ". The scoring system (see Table 5) ranges in scores from 1 to 6 with higher scores reflecting a greater number of errors and more impairment. This scoring system is empirically derived and modified on the basis of clinical practice. Of necessity, it leaves considerable scope for individual judgment, but it is simple enough to have a high level of interrater reliability. Our study lends itself to the analysis of the three major components. These include cross-sectional comparisons of the clock-drawing test with other measures of cognitive function; a longitudinal description of the clock-drawing test over time, and the relationship between deterioration on the clock-drawing test and the decisions to institutionalize.
Table 7: Mini-Mental State Examination
Figure imgf000060_0001
Table 8: Clock-drawing test
1 . Perfect
Figure imgf000061_0001
2, Minor visuospatial errors
Examples
- Mildly impaired spacing of times
- Draws times outside circle
- Turns page while writing numbers so that some
numbers appear upside down
- Draws in linies (spokes) to orient spacing
3. Inaccurate representation of 10 after 11 when
visuosptial organization is perfect or shows only minor
deviations
Examples
- Minute hand points to 10
- Writes '10 after 1 1 '
- Unable to make any denotation of time
4. Moderate visuospatial disoganization of times such
that accurate denotation of 10 after 11 is impossible
Example
- Moderately poor spacing
- Omits numbers
- Perseveration - repeats circle or continues on
past 12 to 13, 14, 15, etc
- Right-left reversal - numbers drawn counter
clockwise
- Dysgraphia - unable to write numbers accurately
5. Severe level of disorganization as described in 4
6. No reasonable representation of a clock Exclude
severe depression or other psychotic states
Examples
- No attempt at all
- No semblance of a clock at alt
Figure imgf000061_0002
- Writes a word or name 0 After prestudy examination the study started 2 weeks later with blood withdrawal from all participants. Over one year with an interval of 3 months all participants had visited the center for the psychometric tests and blood samples withdrawal. The study was approved by the Ethics Committee of the "Arztekammer Sachsen-Anhalt". All patients (or their nearest relatives) and controls gave informed consent to participate in the study.
6.1 .2 Biological samples
For the analysis of the pGlu-Αβ concentration in humans all of the following body fluids can be used: blood, cerebrospinal fluid, urine, lymph, saliva, sweat, pleura fluid, synovial fluid, aqueous fluid, tear fluid, bile and pancreas secretion.
The novel method was established with CSF samples and can be further used for blood, brain extract and urine samples, followed by all other human body fluids. CSF samples for the determination of AD biomarkers were collected into three polypropylene tubes:
1 . containing potassium-EDTA (Sarstedt Monovette, 02.1066.001 ) for EDTA plasma
2. containing Li-heparine (Sartstedt Monovette, 02.1065.001 ) for heparine plasma
3. blank (Sarstedt Monovette, 02.1063.001 ) for serum
All samples were collected by venous puncture or by repeated withdrawal out of an inserted forearm vein indwelling cannula. Blood was collected according to the time schedule (as described in section 1 .1 above). It was centrifuged at 1550 g (3000 rpm) for 10 min at 4<C to provide plasma. Plasma or serum was pipetted off, filled in one 5 ml polypropylene cryo-tube (Carl-Roth, E295.1 ) and stored frozen at -80 'C. Samples were centrifuged within one hour after blood withdrawal. The appropriate labelling of the plasma or serum tubes according to the study protocol was duty of the CRO.
7.2 Results
7.2.1 Demographic Characteristics
Overall 45 persons have participated in the study, 30 healthy controls and 15 AD patients. To observe possible influences of age on plasma Αβ, control persons were selected over a wide range of age and subclassified into three groups, Group I contains age of 18 to 30, Group II from 31 to 45 and Group III from 46 to 65. The demographic characteristics are shown in Table 9.
Demographic Characteristics
Figure imgf000063_0001
2.2 Psychometric tests
For evaluation of the neuropsychological functions all participants have performed the DemTect, Mini-Mental-State Test and Clock-Drawing test. These tests have been made in prestudy, 3 month, 6 month, 9 month and 12 month after the start of the study.
DemTect Test
The raw scores are transformed to give age- and education-independent scores, classified as 'suspected dementia' (score < 8), 'mild cognitive impairment' (score 9 - 12), and 'appropriate for age' (score 13 - 18). The test results for all visits are shown in Figure 3. The results from Figure 3 demonstrate that there are clear differences between the three groups of healthy subjects compared with the patients.
Mini-Mental-State Test
Any score over 27 (out of 30) is effectively normal. Below this, 20 -26 indicates mild dementia; 10 -19 moderate dementia, and below 10 severe dementia. The normal value is also corrected for degree of schooling and age. Low to very low scores correlate closely with the presence of dementia, although other mental disorders can also lead to abnormal findings on MMST testing. The test results are shown in Figure 4. The results from Figure 4 demonstrate that there are clear differences between the three groups of healthy subjects compared with the patients.
Clock-Drawing Test
The scoring system ranges in scores from 1 to 6 with higher scores reflecting a greater number of errors and more impairment. This scoring system is empirically derived and modified on the basis of clinical practice. Of necessity, it leaves considerable scope for individual judgment, but it is simple enough to have a high level of interrater reliability. Our study lends itself to the analysis of the three major components. These include cross- sectional comparisons of the clock-drawing test with other measures of cognitive function; a longitudinal description of the clock-drawing test over time, and the relationship between deterioration on the clock-drawing test and the decisions to institutionalize. The test results are shown in Figure 5. The results from Figure 5 demonstrate that there are clear differences between the three groups of healthy subjects compared with the patients.
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(Pt 1):283-9

Claims

ims
A highly sensitive method for the detection of an Αβ target peptide in a biological sample, comprising a capture reagent which is specific for said Αβ target peptide; and an Αβ target peptide detection complex, said method comprising the steps of:
a) contacting a biological sample with said capture reagent and said detection complex; and
b) detecting said Αβ target peptide;
wherein the detection complex comprises an Αβ target peptide specific antibody and a nucleic acid marker.
The method of claim 1 , wherein said Αβ target peptide is a pGlu-Αβ peptide.
The method of claim 1 or 2, wherein said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding a pGlu-Αβ peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence; and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker.
The method according to any one of claims 1 to 3, comprising the steps of:
a) contacting the biological sample with the detection complex under conditions allowing the binding of an Αβ target peptide to said detection complex; and b) subsequently contacting said Αβ target peptide, which is bound to the detection complex, with a capture reagent capable of binding an Αβ target peptide peptide under conditions allowing the binding of said capture reagent to said Αβ target peptide.
The method of claim 4, wherein the capture reagent is a capture antibody specific for a pGlu-Αβ peptide. The method according to any one of the preceding claims, comprising the steps of:
a) contacting a biological sample with at least one detection complex, wherein said detection complex consists of, consists essentially of or comprises a detection antibody capable of binding an Αβ target peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker; under conditions allowing the binding of said detection complex to said Αβ target peptide;
b) further contacting said Αβ target peptide, which is bound to the detection complex, with a capture antibody capable of binding said Αβ target peptide under conditions allowing the binding of said capture antibody to said Αβ target peptide; and
c) detecting said Αβ target peptide;
wherein said Αβ target peptide is a pGlu-Αβ peptide; and
wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- Αβ peptide.
The method according to any one of the preceding claims, wherein both of the detection antibody and the capture antibody specifically bind to the pyroglutamate carrying amino terminus of said pGlu- Αβ peptide.
The method according to any one of claims 1 to 6, wherein the detection antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- Αβ peptide and the capture antibody binds to another epitope sequence of an Αβ peptide other than the pyroglutamate carrying amino terminus.
The method according to any one of claims 1 to 6, wherein the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said pGlu- Αβ peptide and the detection antibody binds to another epitope sequence of an Αβ peptide the pyroglutamate carrying amino terminus.
0. The method according to any one of the preceding claims, wherein the detection complex is provided in a matrix similar to the biological sample and added directly to the biological sample in a ratio lower than 1 +1 . The method according to any one of the preceding claims, wherein pGlu- Αβ peptides are detected as monomers and/or in Αβ peptide oligomers and/or bound to proteins in the biological sample.
The method according to any one of the preceding claims, wherein said pGlu-Αβ is at least one pGlu-Αβ peptide selected from SEQ ID NOs: 26 to 37.
The method according to any one of the preceding claims, wherein the detection antibody and/or the capture antibody specifically binds to the pyroglutamate carrying amino terminus of said at least one pGlu-Αβ peptide selected from SEQ ID NOs: 26 to 31 .
The method according to claim 13, wherein the detection antibody and/or the capture antibody that specifically binds to the pyroglutamate carrying amino terminus of said at least one pGlu-Αβ peptide of SEQ ID NOs: 26 to 31 , is selected from the group consisting of:
pGluS-Αβ antibody clone 2-48 (monoclonal, mouse); Synaptic Systems, pGluS-Αβ antibody (polyclonal, rabbit); Synaptic Systems, Biotrend, IBL, pGluS-Αβ antibody clone 8E1 (monoclonal, mouse); Anawa,
pGluS-Αβ antibody clone 8E1 (monoclonal, mouse); Biotrend,
Anti-Human Amyloid3 (N3pE) Rabbit IgG (polyclonal, rabbit); IBL,
Abeta-pE3 rabbit polyclonal, affinity purified, Synaptic systems,
Anti- Human Αβ N3pE (8E1 ) Mouse IgG Fab (monoclonal, mouse); IBL, pGluS-Αβ antibody clone 337.48 (monoclonal, mouse); Biolegend, pGluS-Αβ antibody clone 1 -57 (monoclonal, mouse); Synaptic Systems, pGluS-Αβ antibody clone 70D7 (monoclonal, mouse); Synaptic Systems, and oligo pGluS-Αβ antibody clone 9D5 (monoclonal, mouse); Synaptic Systems.
The method according to claim 13, wherein the detection antibody and/or the capture antibody specifically binds to epitope sequence pGlu-FRHDSGC, SEQ ID NO: 38.
The method according to claim 13, wherein the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 40 or the amino acid sequence of SEQ ID NO: 41 , and wherein the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 42, or the amino acid sequence of SEQ ID NO: 43.
17. The method according to claim 13, wherein the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID
NO: 44 or the amino acid sequence of SEQ ID NO: 45, and wherein the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 46, or the amino acid sequence of SEQ ID NO: 47. 18. The method according to claim 13, wherein the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 48 or the amino acid sequence of SEQ ID NO: 49, and wherein the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 50, or the amino acid sequence of SEQ ID NO: 51 .
19. The method according to claim 13, wherein the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 52 or the amino acid sequence of SEQ ID NO: 53, and wherein the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 54, or the amino acid sequence of SEQ ID NO: 55.
20. The method according to any of the preceding claims, wherein said detection antibody and/or said capture antibody is a monoclonal antibody produced by a hybridoma cell line selected from the group consisting of: Αβ 5-5-6 (Deposit No. DSM ACC 2923)
Αβ 6-1 -6 (Deposit No. DSM ACC 2924)
Αβ 17-4-3 (Deposit No. DSM ACC 2925)
Αβ 24-2-3 (Deposit No. DSM ACC 2926). 21 . The method according to any one of claims 1 to 1 1 , wherein said pGlu- Αβ peptide is at least one pGlu-Αβ peptide of SEQ ID NOs: 32 to 37.
22. The method according to claim 22, wherein the detection antibody and/or the capture antibody that specifically binds to the pyroglutamate carrying amino terminus of said pGlu- Αβ(1 1 -χ) peptide pGlu-Αβ peptide of SEQ ID NOs: 32 to 37, is selected from the group consisting of
pGlul 1 -Αβ antibody clone 173D8, (monoclonal, mouse); Synaptic Systems, and pGlul 1 -Αβ antibody (polyclonal rabbit); Synaptic Systems.
23. The method according to claim 21 , wherein the detection antibody and/or the capture antibody specifically binds to epitope sequence pGlu-VHH of SEQ ID NO: 39.
24. The method according to claim 21 , wherein the variable part of the light chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 56 or the amino acid sequence of SEQ ID NO: 57, and wherein the variable part of the heavy chain of said detection antibody and/or said capture antibody has the nucleotide sequence of SEQ ID NO: 58, or the amino acid sequence of SEQ ID NO: 59.
25. The method according to claim 21 , wherein said detection antibody and/or said capture antibody is a monoclonal antibody produced by hybridoma cell line Αβ 13-1 1 -6 (Deposit No. DSM ACC 3100).
26. The method according to any one of the preceding claims, wherein said detection antibody and/or said capture antibody binds to an epitope of the Αβ peptide other than the pyroglutamate carrying amino terminus of a said pGlu-Αβ peptide 27. The method according to claim 26, wherein said detection antibody and/or said capture antibody is selected from the group consisting of:
3D6, Epitope:1 -5 (Elan Pharmaceuticals, Innogenetics),
pAb-EL16, Epitope: 1 -7,
2H4, Epitope: 1 -8 (Covance),
1 E1 1 , Epitope: 1 -8 (Covance),
20.1 , Epitope: 1 -10 (Covance, Santa Cruz Biotechnology),
Rabbit Anti-Αβ Polyclonal Antibody, Epitope: 1 -14 (Abeam),
AB10, Epitope: 1 -16 (Chemicon/Upstate - part of Millipore),
82E1 , Epitope: 1 -16 (IBL),
pAb 1 -42, Epitope: 1 -1 1 , NAB228, Epitope: 1 -1 1 (Covance, Sigma-Aldrich, Cell Signaling, Santa Cruz
Biotechnology, Zymed/lnvitrogen),
DE2, Epitope: 1 -16 (Chemicon/Upstate - part of Millipore),
DE2B4, Epitope: 1 -17 (Novus Biologicals, Abeam, Accurate, AbD Serotec),
6E10, Epitope: 1 -17 (Signet Covance, Sigma-Aldrich),
10D5, Epitope: 3-7 (Elan Pharmaceuticals),
WO-2, Epitope: 4-10 (The Genetics Company),
1 A3, Epitope 5-9 (Abbiotec),
pAb-EL.21 , Epitope 5-1 1 ,
310-03, Epitope 5-16 (Abeam, Santa Cruz Biotechnology),
Chicken Anti-Human Αβ Polyclonal Antibody, Epitope 12-28 (Abeam),
Chicken Anti-Human Αβ Polyclonal Antibody, Epitope 25-35 (Abeam),
Rabbit Anti-Human Αβ Polyclonal Antibody, Epitope: N-terminal (ABR),
Rabbit Anti-Human Αβ Polyclonal Antibody (Anaspec),
12C3, Epitope 10-16 (Abbiotec, Santa Cruz Biotechnology),
16C9, Epitope 10-16 (Abbiotec, Santa Cruz Biotechnology),
19B8, Epitope 9-10 (Abbiotec, Santa Cruz Biotechnology),
pAb-EL26, Epitope: 1 1 -26,
BAM90.1 , Epitope: 13-28 (Sigma-Aldrich),
Rabbit Anti-beta-Amyloid (pan) Polyclonal Antibody, Epitope: 15-30 (MBL), 22D12, Epitope: 18-21 (Santa Cruz Biotechnology),
266, Epitope: 16-24 (Elan Pharmaceuticals),
pAb-EL17; Epitope: 15-24,
4G8, Epitope: 17-24 (Covance),
Rabbit Anti-Αβ Polyclonal Antibody, Epitope: 22-35 (Abeam),
G2-10; Epitope: 31 -40 (The Genetics Company),
Rabbit Anti-Αβ, aa 32-40 Polyclonal Antibody (GenScript Corporation),
EP1876Y, Epitope: x-40 (Novus Biologicals),
G2-1 1 , Epitope: 33-42 (The Genetics Company),
16C1 1 , Epitope: 33-42 (Santa Cruz Biotechnology),
21 F12, Epitope: 34-42 (Elan Pharmaceuticals, Innogenetics),
1 A10, Epitope: 35-40 (IBL),
D-17 Goat anti-Αβ antibody, Epitope: C-terminal (Santa Cruz Biotechnology), 2C8, Epitope: 1 -16 (Accurate),
BAM- 10, Epitope: 1 -12 (Biotrend, Sigma-Aldrich), 12B2, Epitope: 1 1 -28 (IBL, Biotrend),
6F/3D, Epitope: 8-17 (Accurate),
310-01 , Epitope: 10-16, (Accurate),
1 1 A5-B10, Epitop: 34-40, (Millipore),
12F4, Epitope: 36-42, (Millipore, Covance),
9C4, Epitope: 37-43, (Milipore),
7N22, Epitope: 1 -20, (Biosource),
1 1 A50-B10, Epitope: 35-40) (Covance),
G2-13, Epitope: C-terminus Αβ42 (Genetics Company),
2B9, Epitope: 1 -17 (Santa Cruz), and
9C4, Epitope: 3-8 (Covance).
28. The method according to any one of the preceding claims, wherein the detection complex further comprises one or more second linker molecules capable of specifically binding the first linker molecule.
29. The method according to any one of the preceding claims, wherein the detection of said pGlu- Αβ peptide is performed with an immuno-PCR reaction.
30. The method according to any one of the preceding claims, wherein a mixture of different pGlu- Αβ peptides, is applied as a reference substance for quantification.
31 . Use of a method according to any one of the preceding claims in a method of diagnosing or monitoring a neurodegenerative disorder, such as Alzheimer's disease and Mild Cognitive Impairment.
32. A method of diagnosing or monitoring a neurodegenerative disease, such as Alzheimer's disease and Mild Cognitive Impairment, which comprises determining the level of a pGlu- Αβ peptide in a biological sample from a test subject, comprising the following steps: i. determining a first level of a pGlu-Αβ peptide in a biological sample from a subject suspected to be afflicted with said neurodegenerative disease with a method according to any one of claims 1 to 30;
ii. comparing the first level of the pGlu-Αβ peptide with a second level of said pGlu-Αβ peptide in a healthy control subject; and iii. diagnosing the subject with a neurodegenerative disease where the level of said pGlu-Αβ peptide in said biological sample is increased compared to the level of said pGlu-Αβ peptide in the healthy control subject.
A method of monitoring the efficacy of a therapy in a subject having, suspected of having, or being predisposed to a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, comprising determining determining the level of a pGlu-Αβ peptide in a biological sample from a test subject with a method according to any one of claims 1 to 30.
The method of diagnosing or monitoring as defined in claim 32 or 33, which comprises determining the level of a pGlu-Αβ peptide in a biological sample taken on two or more occasions from a test subject.
The method according to any one of claims 32 to 34, wherein the state of the neurodegenerative disease of the subjects that are donors of the biological samples is characterized in one or more psychometric tests.
The method according to claim 35, wherein said psychometric tests are selected from the DemTect Test, Mini-Mental-State Test, Clock-Drawing Test, ADAS-Cog, Blessed Test, CANTAB, Cognistat, NPI, BEHAVE-AD, CERAD, CSDD, GDS and the The 7 Minute Screen.
The method or use according to any one of the preceding claims, wherein the biological sample is selected from the group consisting of tissue, blood, serum, urine, cerebrospinal fluid (CSF), plasma, lymph, saliva, sweat, pleural fluid, synovial fluid, tear fluid, bile and pancreas secretion.
A kit for diagnosing a neurodegenerative disease, such as Alzheimer's disease or Mild Cognitive Impairment, which comprises at least one detectiondetection complex, at least one capture antibody and instructions for using the kit, wherein said detectiondetection complex comprises, essentially consists of or consists of a detection antibody capable of binding an Αβ target peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker, and wherein at least one of the detection antibody and the capture antibody specifically binds to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide. 39. The kit of claim 38, wherein the detection complex further comprises one or more second linker molecules capable of specifically binding the first linker molecule.
40. A detectiondetection complex comprising, essentially consisting of or consisting of a detection antibody capable of binding an Αβ target peptide, one or more nucleic acid markers comprising a predetermined nucleotide sequence and one or more first linker molecules adapted to bind said antibody and the nucleic acid marker.
41 . The detectiondetection complex of claim 40, further comprising one or more second linker molecules capable of specifically binding the first linker molecule.
42. The detectiondetection complex of claim 40 or 41 , wherein the detection antibody specifically binds to the pyroglutamate carrying amino terminus of a pGlu-Αβ peptide.
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