WO2016057660A1 - Ppar agonists, compounds, pharmaceutical compositions, and methods of use thereof - Google Patents

Ppar agonists, compounds, pharmaceutical compositions, and methods of use thereof Download PDF

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WO2016057660A1
WO2016057660A1 PCT/US2015/054477 US2015054477W WO2016057660A1 WO 2016057660 A1 WO2016057660 A1 WO 2016057660A1 US 2015054477 W US2015054477 W US 2015054477W WO 2016057660 A1 WO2016057660 A1 WO 2016057660A1
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compound
disease
methyl
mmol
alkyl
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PCT/US2015/054477
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French (fr)
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WO2016057660A8 (en
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Thomas Baiga
Michael Downes
Ronald Evans
Arthur Kluge
Bharat Lagu
Masanori Miura
Sunil Kumar Panigrahi
Michael Patane
Susanta Samajdar
Ramesh SENAIAR
Taisuke Takahashi
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Mitobridge, Inc.
Salk Institute Biological Studies
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Priority to US15/517,893 priority Critical patent/US10188627B2/en
Publication of WO2016057660A1 publication Critical patent/WO2016057660A1/en
Publication of WO2016057660A8 publication Critical patent/WO2016057660A8/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/335Heterocyclic compounds having oxygen as the only ring hetero atom, e.g. fungichromin
    • A61K31/34Heterocyclic compounds having oxygen as the only ring hetero atom, e.g. fungichromin having five-membered rings with one oxygen as the only ring hetero atom, e.g. isosorbide
    • A61K31/341Heterocyclic compounds having oxygen as the only ring hetero atom, e.g. fungichromin having five-membered rings with one oxygen as the only ring hetero atom, e.g. isosorbide not condensed with another ring, e.g. ranitidine, furosemide, bufetolol, muscarine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/16Amides, e.g. hydroxamic acids
    • A61K31/165Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide
    • A61K31/166Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide having the carbon of a carboxamide group directly attached to the aromatic ring, e.g. procainamide, procarbazine, metoclopramide, labetalol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C233/00Carboxylic acid amides
    • C07C233/01Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C233/02Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having nitrogen atoms of carboxamide groups bound to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
    • C07C233/11Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having nitrogen atoms of carboxamide groups bound to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals with carbon atoms of carboxamide groups bound to carbon atoms of an unsaturated carbon skeleton containing six-membered aromatic rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D235/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings
    • C07D235/02Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings condensed with carbocyclic rings or ring systems
    • C07D235/04Benzimidazoles; Hydrogenated benzimidazoles
    • C07D235/20Two benzimidazolyl-2 radicals linked together directly or via a hydrocarbon or substituted hydrocarbon radical
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D307/00Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom
    • C07D307/02Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings
    • C07D307/34Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
    • C07D307/38Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with substituted hydrocarbon radicals attached to ring carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D307/00Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom
    • C07D307/02Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings
    • C07D307/34Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
    • C07D307/38Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with substituted hydrocarbon radicals attached to ring carbon atoms
    • C07D307/54Radicals substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D307/00Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom
    • C07D307/77Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom ortho- or peri-condensed with carbocyclic rings or ring systems
    • C07D307/78Benzo [b] furans; Hydrogenated benzo [b] furans
    • C07D307/79Benzo [b] furans; Hydrogenated benzo [b] furans with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to carbon atoms of the hetero ring
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Definitions

  • This application concerns agonists of peroxisome proliferator- activated receptors (PPAR), particularly PPAR delta (PPAR5), and methods for their use, such as to treat or prevent one or more PPAR5-related diseases.
  • PPAR peroxisome proliferator- activated receptors
  • PPAR delta PPAR5
  • Peroxisome proliferator- activated receptor delta is a nuclear receptor that is capable of regulating mitochondria biosynthesis. As shown in PCT/US2014/033088 (incorporated herein by reference), modulating the activity of PPAR5 is useful for the treatment of diseases, developmental delays, and symptoms related to mitochondrial dysfunction, such as Alpers's Disease, MERRF-Myoclonic epilepsy and ragged-red fiber disease, Pearson Syndrome, and the like. Modulation PPAR5 activity is effective in the treatment of other conditions, such as muscular diseases, demyelinating diseases, vascular diseases, and metabolic diseases. Indeed, PPAR5 is an important biological target for compounds used to help treat and prevent mitochondrial diseases, muscle -related diseases and disorders, and other related conditions.
  • disclosed herein are methods modulating the activity of PPAR5 for the treatment of diseases, developmental delays, and symptoms related to mitochondrial dysfunction (see, e.g. , Examples 1 - 7).
  • the disclosed compounds and compositions are useful in the treatment of mitochondrial diseases, such as Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia, Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and strokelike episodes, MERRF-Myoclonic epilepsy and ragged-red fiber disease, NARP-neurogenic muscle weakness, ataxia, and retinitis pigmentosa, and Pearson Syndrome.
  • mitochondrial diseases such as Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia, Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and strokelike episodes, MERRF-Myoclonic epilepsy and ragged-red
  • Z is CH, N, or N" ° ;
  • Ring A is optionally substituted (e.g. , with halogen, Ci-Gralkyl, C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, C 1 -C 4 -haloalkoxy, or C 3 -C 6 -cycloalkyl) phenylene when Z is CH, optionally substituted (e.g. , with halogen, Ci-C 4 -alkyl, C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, Ci-C 4 -haloalkoxy, or C 3 -C 6 -cycloalkyl) pyridinylene when Z is N, or optionally substituted (e.g. , with halogen, Ci-C 4 -alkyl, C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, C 1 -C 4 -haloalkoxy, or
  • Ar is optionally substituted (e.g. , with halogen, Ci-C4-alkyl, C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, Ci-C 4 -haloalkoxy, or C3-C 6 -cycloalkyl) 5 or 6-membered monocyclic arylene
  • Ar is optionally substituted 9- or 10-membered fused bicyclic heteroarylene
  • R 1 is -OR 1A or-NR 1A R 1B ;
  • R 1A , R 1B are each independently hydrogen or Ci-C 4 -alkyl
  • W is O
  • L is -(CH 2 ) n - wherein n is an integer between 1 and 6, and one or more (CH 2 ) is replaced with -CH 2 -CH(CH 3 )-, -CH(CH 3 )-CH 2 - -CH 2 -C(CH 3 ) 2 - , -C(CH 3 ) 2 -
  • Ci-C 4 -alkyl C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, Ci-C 4 -haloalkoxy, or C 3 -C 6 -cycloalkyl); or
  • each R is independently hydrogen, halogen, or Ci-C 4 -alkyl
  • R is halogen, Ci-C 4 -alkyl, C 3 -C 6 -cycloalkyl, CN, Ci-C 4 -alkoxy, Ci-C 4 -haloalkoxy, 5- or 6-membered heterocycloalkyl, - ⁇ -R 2A , -0(CH 2 ) m R 2B , NH(Ci- C 4 -alkyl), N(Ci-C 4 -alkyl) 2 , C(0)(Ci-C 4 -alkyl), optionally substituted aryl, or optionally substituted 5-membered heteroaryl;
  • n is an integer having an a value of 0, 1, 2, or 3;
  • R ⁇ and R are each independently Ci-C 4 -alkyl, C 3 -C 6 -cycloalkyl, or Ci-C 4 haloalkyl;
  • R 3 is Ci-C 4 -alkyl, , O , or Ci-C 4 -haloalkyl;
  • each R 4 is independently H, D, or F;
  • compositions of compounds of Formula (I) also are disclosed herein. Particular embodiments comprise a pharmaceutically acceptable excipient and one or more of the disclosed compounds, or a pharmaceutically acceptable salt thereof.
  • the pharmaceutical compositions of the invention can be used in therapy, e.g. , for treating a ⁇ -related disease or condition in a subject.
  • Another embodiment comprises treating a ⁇ -related disease or condition in a subject by administering to the subject a therapeutically effective amount of one or more disclosed compounds, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising the compound(s).
  • Also provided herein is the use of one or more of the disclosed compounds, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising one or more of the disclosed compounds, for the preparation of a medicament for the treatment of a PPAR5-related disease or condition.
  • Figures 1A and IB are bar graphs showing recovery of damaged muscle fibers after injury.
  • Figures 1C-1F show VP16-PPAR5 transgenic animals exhibit accelerated muscle regeneration after acute injury. All error bars are SEM.
  • Figure 1C provides two images of transverse sections of TA of WT and TG animals, with damaged fibers stained by Evans Blue dye 5 days after the injury.
  • Figures 1G-1J illustrate VP16-PPAR5 transgenic animals that exhibit accelerated muscle regeneration after acute injury. All error bars are SEM. *P ⁇ 0.05; **P ⁇ 0.01;
  • Figure 1H illustrates the average number of regenerating fibers per field.
  • Figures 2A-2E illustrate that PPAR5 activation promotes a temporal shift in gene expression profile of the regenerative process. *P ⁇ 0.05. All error bars are SEM.
  • Figure 2B shows the relative expression of regeneration markers in TG.
  • Figure 2E is a bar graph showing the Myh8 mRNA level 5 days post injury (n>5).
  • Figures 3A-3G illustrate that PPAR5 regulates FGFl a to promote micro- vascularization. *P ⁇ 0.05; **P ⁇ 0.01. All error bars are SEM.
  • Figure 3A provides immunofluorescence staining for CD31 on transverse sections of uninjured TA from WT and TG animals.
  • Figure 3D provides a Western blot for FGFl.
  • Figure 3G provides luciferase reporter assays of FGFla promoter co- transfected with PPAR5 with or without the ligand, GW501516.
  • Figures 4A-4E illustrate that the skeletal muscle specific activation of PPAR5 increases the quiescent satellite cell pool. All error bars are SEM. *P ⁇ 0.05; **P ⁇ 0.01.
  • Figure 4A provides digital images of isolated myofibers from lateral gastrocnemius of 8- week-old nestin reporter mice with or without VP16-PPAR5 transgene.
  • Figure 4D is a bar graph showing VP 16 mRNA levels in whole TA or satellite cells (SC) from WT and TG.
  • Figure 4E is a bar graph showing PPAR5 mRNA levels in whole TA or satellite cells (SC) from WT and TG.
  • Figures 5A-5E illustrate that acute pharmacological activation of PPAR5 confers regenerative advantage. *P ⁇ 0.05; **P ⁇ 0.01; ***P ⁇ 0.001. All error bars are SEM.
  • Figure 5B provides digital images of transverse TA sections showing Evans Blue dye uptake 5 days after the injury.
  • Figures 6A-6E show VP16-PPAR5 transgenic animals exhibit accelerated muscle regeneration after the acute injury. All error bars are SEM.
  • Figure 6A shows werum creatine kinase levels in wildtpe and VP16-PPAR5 transgenic animals.
  • Figure 6B shows transverse sections of TA of WT and TG animals. Staining of damaged fibers by Evans Blue dye 5 days after the injury.
  • Figure 7A shows transverse sections of TA of WT and TG animals. Staining of damaged fibers by Evans Blue 3 days after the injury.
  • Figure 7C shows post injury temporal gene expression profiles of inflammatory markers TNFcc.
  • Figure 7D shows induction of VEGFa in TA muscle, as measured by Western Blot, in TG animals.
  • FIG. 7E shows quantification of TNFa Western Blot.
  • Figure 8 is a line graph depicting the IV exposure in mice of several PPAR5 agonists over the course of four hours.
  • PPAR- ⁇ peroxisome proliferator- activated receptor delta
  • PPAR- ⁇ peroxisome proliferator- activated receptor beta
  • NR1C2 nuclear receptor subfamily 1, group C, member 2
  • Ligands of PPAR5 can promote myoblast proliferation after injury, such as injury to skeletal muscle.
  • sequences are publically available, for example from GenBank® sequence database (e.g., accession numbers NP_001165289.1 (human, protein) NP_035275 (mouse, protein), NM_001171818 (human, nucleic acid) and NM_011145 (mouse, nucleic acid)).
  • PPAR5 agonist refers to substances that increace the activity of
  • Substances can be tested for their PPAR5 agonist activity by contacting the substance with cells expressing PPAR5, detecting their binding with PPAR5 and then detecting signals that serve as the indicator of the activation of PPAR5.
  • alkyl used alone or as part of a larger moiety, such as “alkoxy”,
  • haloalkyl means saturated aliphatic straight- chain or branched monovalent hydrocarbon radical.
  • an alkyl group typically has 1 to 4 carbon atoms, i.e., C 1 -C 4 -alkyl.
  • a "C 1 -C 4 -alkyl” group is means a radical having from 1 to 4 carbon atoms in a linear or branched
  • Alkoxy means an alkyl radical attached through an oxygen linking atom, represented by -O-alkyl.
  • -O-alkyl For example, "Ci-Cs-alkoxy” includes methoxy, ethoxy, propoxy, and butoxy.
  • haloalkyl and “haloalkoxy” mean alkyl or alkoxy, as the case may be, substituted with one or more halogen atoms.
  • halogen means fluorine or fluoro (F), chlorine or chloro (CI), bromine or bromo (Br), or iodine or iodo (I).
  • ring used herein means a cyclic group, which includes cycloalkyl, heterocycloaklyl, aryl, and heteroaryl, each of which can be monocyclic, bicyclic ⁇ e.g., a bridged bicyclic ring) or polycyclic ⁇ e.g., tricyclic) for cycloalkyl and heterocycloalkyl, or fused for aryl and heteroaryl.
  • aryl group means an aromatic hydrocarbon ring system having six to fourteen carbon ring atoms.
  • aryl may be used interchangeably with the terms “aryl ring”, “aromatic ring”, “aryl group”, and “aromatic group”.
  • An aryl group typically has six to fourteen ring atoms.
  • An “aryl group” also includes an aromatic ring fused to a non- aromatic carbocylic ring. Examples of aryl groups include phenyl, naphthyl, anthracenyl, 1,2- dihydronaphthyl, 1,2,3,4-tetrahydronaphthyl, fluorenyl, indanyl, indenyl and the like.
  • a “substituted aryl group” is substituted at any one or more substitutable ring atom, which is a ring carbon atom bonded to a hydrogen.
  • “Arylene” is a bivalent aryl group, i.e., having two point of attachment to the remainder of the molecule.
  • Cycloalkyl means a 3-12 membered saturated aliphatic cyclic hydrocarbon radical.
  • monocyclic C3-C 6 -cycloalkyl means a radical having from 3 to 6 carbon atoms arranged in a monocyclic ring.
  • a C 3 -C 6 -cyclo alkyl includes, but is not limited to, cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
  • Heterocycloalkyl means a saturated or unsaturated non-aromatic 3 to 12 membered ring radical optionally containing one or more double bonds. It can be monocyclic, bicyclic ⁇ e.g., a bridged bicyclic ring), or polycyclic ⁇ e.g., tricyclic).
  • the heterocycloalkyl contains 1 to 4 heteroatoms, which may be the same or different, selected from N, O or S.
  • the heterocycloalkyl ring optionally contains one or more double bonds and/or is optionally fused with one or more non-aromatic carbocyclic rings, aromatic rings (e.g. , phenyl ring) or heteroaryl rings.
  • heterocycloalkyl means a radical having from 5 or 6 ring atoms (including 1 to 3 ring heteroatoms) arranged in a monocyclic ring.
  • heterocycloalkyl include, but are not limited to, morpholinyl, thiomorpholinyl, pyrrolidinonyl, pyrrolidinyl, piperidinyl, piperazinyl, hydantoinyl, valerolactamyl, dihydroimidazole, dihydrofuranyl, dihydropyranyl, dihydropyridinyl, dihydropyrimidinyl, dihydrothienyl, dihydrothiophenyl, dihydrothiopyranyl, tetrahydroimidazole,
  • heteroaryl refers to any organic radical that is used interchangeably herein.
  • heteroaryl refers to any organic radical that is used interchangeably herein.
  • Heteroaryl when used alone or as part of a larger moiety as in “hetero aralkyl” or
  • hetero arylalkoxy refers to aromatic ring groups having five to fourteen ring atoms selected from carbon and at least one (typically 1 to 4, more typically 1 or 2) heteroatoms (e.g. , oxygen, nitrogen or sulfur).
  • heteroaryl includes monocyclic rings and polycyclic rings in which a monocyclic heteroaromatic ring is fused to one or more other aromatic or
  • Heteroarylene is a bivalent heteroaryl group, i.e., having two point of attachment to the remainder of the molecule.
  • “Monocyclic 5- or 6-membered heteroaryl” means a monocyclic aromatic ring system having five or six ring atoms selected from carbon and at least one (typically 1 to 3, more typically 1 or 2) heteroatoms (e.g. , oxygen, nitrogen or sulfur).
  • monocyclic 5-6 membered heteroaryl groups include furanyl (e.g. , 2-furanyl, 3-furanyl), imidazolyl (e.g. , N- imidazolyl, 2-imidazolyl, 4-imidazolyl, 5-imidazolyl), isoxazolyl (e.g.
  • 3-isoxazolyl 4- isoxazolyl, 5-isoxazolyl), oxadiazolyl (e.g. , 2-oxadiazolyl, 5-oxadiazolyl), oxazolyl (e.g. , 2- oxazolyl, 4-oxazolyl, 5-oxazolyl), pyrazolyl (e.g. , 3-pyrazolyl, 4-pyrazolyl), pyrrolyl (e.g. , 1- pyrrolyl, 2-pyrrolyl, 3-pyrrolyl), pyridyl (e.g. , 2-pyridyl, 3-pyridyl, 4-pyridyl), pyrimidinyl (e.g.
  • polycyclic aromatic heteroaryl groups examples include carbazolyl, benzimidazolyl, benzothienyl, benzofuranyl, isobenzofuranyl, indolyl, benzotriazolyl, benzothiazolyl, benzoxazolyl, quinolinyl, isoquinolinyl, indazolyl, isoindolyl, acridinyl, or benzisoxazolyl.
  • a "substituted heteroaryl group” is substituted at any one or more substitutable ring atom, which is a ring carbon or ring nitrogen atom bonded to a hydrogen.
  • fused refers to any combination of two or more cycloalkyl, heterocycloalkyl, aryl, and/or heteroaryl rings that share two adjacent ring atoms.
  • bridged refers to two carbocyclic refers to any combination of two cycloalkyl or heterocycloalkyl rings that share three or more adjacent ring atoms.
  • a non-hydrogen substituent is in the place of a hydrogen substituent on a carbon, sulfur or nitrogen of the substituent.
  • a substituted alkyl is an alkyl wherein at least one non-hydrogen substituent is in the place of a hydrogen substituent on the alkyl substituent.
  • monofluoroalkyl is alkyl substituted with a fluoro substituent
  • difluoroalkyl is alkyl substituted with two fluoro substituents. It should be recognized that if there is more than one substitution on a substituent, each non-hydrogen substituent can be identical or different (unless otherwise stated).
  • a list of groups are collectively described as being optionally substituted by one or more of a list of substituents, the list can include: (1) unsubstitutable groups, (2) substitutable groups that are not substituted by the optional substituents, and/or (3) substitutable groups that are substituted by one or more of the optional substituents.
  • a group is described as being optionally substituted with up to a particular number of non-hydrogen substituents, that group can be either (1) not substituted; or (2) substituted by up to that particular number of non-hydrogen substituents or by up to the maximum number of substitutable positions on the substituent, whichever is less.
  • a group is described as a heteroaryl optionally substituted with up to 3 non-hydrogen substituents, then any heteroaryl with less than 3 substitutable positions would be optionally substituted by up to only as many non-hydrogen substituents as the heteroaryl has
  • suitable substituents for substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl groups include the groups represented by
  • R c is -H or (Q- C 6 )alkyl, optionally substituted with 1 to 3 substituents independently selected from halogen, -NR g R h , hydroxy and (C 1 -C 3 )alkoxy;
  • R d is -H or (C 1 -C 6 )alkyl, optionally substituted with 1 to 3 substituents independently selected from halogen, -NR g R h , hydroxy and (Ci-C 3 )alkoxy;
  • R e and R f are each independently selected from -H and (C 1 -C 6 )alkyl optionally substituted with 1 to 3 substituents independently selected from halogen, -NR g R h , hydroxy and (Ci-C 3 )alkoxy; or R e and R f , together with the nitrogen to which they are attached, form a 3
  • R g and R h are each independently selected from -H, (Ci-C 6 )alkyl, halo(C 1 -C 6 )alkyl, hydroxy(Ci-C 6 )alkyl and (C 1 -C 3 )alkoxy(C 1 -C 6 )alkyl.
  • suitable substituents for substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl groups include alkyl, haloalkyl, alkoxy, haloalkoxy, cyano, and halogen.
  • Stereoisomers are compounds that differ only in their spatial arrangement.
  • a disclosed compound is named or depicted by structure without indicating stereochemistry, it is understood that the name or the structure encompasses one or more of the possible stereoisomers, or geometric isomers, or a mixture of the encompassed stereoisomers or geometric isomers.
  • geometric isomeric purity of the named or depicted geometric isomer is at least 60%, 70%, 80%, 90%, 99% or 99.9% pure by weight.
  • Geometric isomeric purity is determined by dividing the weight of the named or depicted geometric isomer in the mixture by the total weight of all of the geomeric isomers in the mixture. It includes a single stereoisomers free of the other stereoisomers, or, alternatively, mixtures of the stereoisomers. Racemic mixture means 50% of one enantiomer and 50% of is corresponding enantiomer.
  • Enantiomeric and diastereomeric mixtures can be resolved into their component enantiomers or stereoisomers by well-known methods, such as chiral-phase gas
  • Enantiomers and diastereomers also can be obtained from diastereomerically- or
  • a compound When a compound is designated by a name or structure that indicates a single enantiomer, unless indicated otherwise, the compound is at least 60%, 70%, 80%, 90%, 99% or 99.9% optically pure (also referred to as "enantiomerically pure").
  • Optical purity is the weight in the mixture of the named or depicted enantiomer divided by the total weight in the mixture of both enantiomers.
  • Suitable pharmaceutically acceptable salts of the compounds disclosed herein include salts of inorganic acids (such as hydrochloric acid, hydrobromic, phosphoric, nitric, and sulfuric acids) and of organic acids (such as, e.g., acetic acid, benzenesulfonic, benzoic, methanesulfonic, and p-toluenesulfonic acids).
  • Compounds of the present teachings with acidic groups such as carboxylic acids can form pharmaceutically acceptable salts with pharmaceutically acceptable base(s).
  • Suitable pharmaceutically acceptable basic salts include ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts).
  • the term "pharmaceutically-acceptable salt” refers to pharmaceutical salts that are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, and allergic response, and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically-acceptable salts are well known in the art. For example, S. M. Berge, et al. describes pharmacologically acceptable salts in J. Pharm. Set, 1977, 66: 1-19.
  • the neutral forms of the compounds of the invention are regenerated from their corresponding salts by contacting the salt with a base or acid and isolating the parent compound in the conventional manner.
  • the parent form of the compound may differ from the various salt forms in certain physical properties, such as solubility in polar solvents.
  • the neutral forms of compounds disclosed herein also are included in the invention.
  • administer refers to methods that may be used to enable delivery of compositions to the desired site of biological action. These methods include, but are not limited to, intraarticular (in the joints), intravenous, intramuscular, intratumoral, intradermal, intraperitoneal, subcutaneous, orally, topically, intrathecally, inhalationally, transdermally, rectally, and the like.
  • Administration techniques that can be employed with the agents and methods described herein are found in e.g., Goodman and Gilman, The Pharmacological Basis of Therapeutics, current ed.; Pergamon; and Remington's, Pharmaceutical Sciences (current edition), Mack Publishing Co., Easton, Pa.
  • co-administration are meant to encompass administration of two or more therapeutic agents to a single subject, and are intended to include treatment regimens in which the agents are administered by the same or different route of administration or at the same or different times.
  • the one or more compounds described herein will be coadministered with other agents.
  • These terms encompass administration of two or more agents to the subject so that both agents and/or their metabolites are present in the subject at the same time. They include simultaneous administration in separate compositions,
  • the compounds described herein and the other agent(s) are administered in a single composition.
  • the compounds described herein and the other agent(s) are admixed in the composition.
  • an effective amount of a compound taught herein varies depending upon various factors, such as the given drug or compound, the pharmaceutical formulation, the route of administration, the type of disease or disorder, the identity of the subject or host being treated, and the like, but can nevertheless be routinely determined by one skilled in the art.
  • An effective amount of a compound of the present teachings may be readily determined by one of ordinary skill by routine methods known in the art.
  • a therapeutically effective amount means an amount when administered to the subject which results in beneficial or desired results, including clinical results, e.g. , inhibits, suppresses or reduces the symptoms of the condition being treated in the subject as compared to a control.
  • a therapeutically effective amount can be given in unit dosage form (e.g. , 1 mg to about 50 g per day, altnernatively from 10 mg to about 5 grams per day; and in another alternatively from 10 mg to 1 gram per day).
  • the particular mode of administration and the dosage regimen will be selected by the attending clinician, taking into account the particulars of the case (e.g. the subject, the disease, the disease state involved, the particular treatment, and whether the treatment is prophylactic). Treatment can involve daily or multi-daily or less than daily (such as weekly or monthly etc.) doses over a period of a few days to months, or even years. However, a person of ordinary skill in the art would immediately recognize appropriate and/or equivalent doses looking at dosages of approved compositions for treating a PPAR5 related disease using the disclosed PPAR agonists for guidance.
  • a “subject” is a mammal, preferably a human, but can also be an animal in need of veterinary treatment, e.g. , companion animals (e.g. , dogs, cats, and the like), farm animals (e.g. , cows, sheep, pigs, horses, and the like) and laboratory animals (e.g. , rats, mice, guinea pigs, and the like).
  • veterinary treatment e.g. , companion animals (e.g. , dogs, cats, and the like), farm animals (e.g. , cows, sheep, pigs, horses, and the like) and laboratory animals (e.g. , rats, mice, guinea pigs, and the like).
  • “Pharmaceutically acceptable excipient” and “pharmaceutically acceptable carrier” refer to a substance that aids the formulation and/or administration of an active agent to and/or absorption by a subject and can be included in the compositions of the present disclosure without causing a significant adverse toxic
  • Non-limiting examples of pharmaceutically acceptable excipients include water, NaCl, normal saline solutions, lactated Ringer's, normal sucrose, normal glucose, binders, fillers, disintegrants, lubricants, coatings, sweeteners, flavors, salt solutions (such as Ringer's solution), alcohols, oils, gelatins, carbohydrates such as lactose, amylose or starch, fatty acid esters, hydroxymethycellulose, polyvinyl pyrrolidine, and colors, and the like.
  • Such preparations can be sterilized and, if desired, mixed with auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with or interfere with the activity of the compounds provided herein.
  • auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with or interfere with the activity of the compounds provided herein.
  • auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with or interfere with the activity of the compounds provided herein.
  • auxiliary agents such
  • the com ound has the structure of Formula (II):
  • each R 10 is independently hydrogen, halogen, Q-Gralkyl, C 1 -C 4 -haloalkyl, CN, C 1 -C4- alkoxy, Ci-C 4 -haloalkoxy, or 20
  • each R is independently hydrogen, halogen, C 1 -C 4 -alkyl, CN, or Ci-C 4 -alkoxy; and the remainder of the variables are as defined for Formula (I).
  • the compound of the invention has the structure of any one of Formulas (III) - (IX):
  • t is an integer having a value of 1 or 2; and the remainder of the variables are as defined for Formula (II) in the 1 st embodiment.
  • t is an integer having a value of 1 or 2; and the remainder of the variables are as defined for Formula (II) in the 1 st embodiment.
  • q is an integer having a value of 0 or 1;
  • X is O® ;
  • ⁇ S is O® ;
  • the compound has the structure of any one of Formulas (X) -
  • Q 2 (where present) is CR 20 or N; p and t are integers each independently having a value of 1 or 2; each R 10 is independently hydrogen, halogen, Ci-C 4 - alkyl, C 1 -C 4 -haloalkyl, CN, Ci-C 4 -alkoxy, Ci-C 4 -haloalkoxy, or 20
  • each R is independently hydrogen, halogen, Ci-C 4 -alkyl, CN, or Ci-C 4 -alkoxy; and the remainder of the variables are as defined for Formula (I).
  • the compound has the structure of any one of Formulas (I) - (XIII), wherein Z is CH, and the remainder of the variables are as defined in the 1 st embodiment, the 2 nd embodiment, or the 3 rd embodiment.
  • the compound has the structure of any one of Formulas (I) - (XIII), wherein L is selected from the group consisting of:
  • the compound has the structure of any one of Formulas (I) - (XIII), wherein L is selected from the group consisting of:
  • the compound has the structure of any one of Formulas (I) -
  • the compound has the structure of any one of Formulas (I) - (XIII), wherein R 3 is methyl, and the remainder of the variables are as defined in the 8 th embodiment.
  • the compound has the structure of any one of Formulas (I) -
  • L is
  • the compound has the structure of any one of Formulas (I)
  • R 1U is hydrogen, halogen, methyl, CN, OCH 3 , CF 3 , OCF 3 , OCHF 2 , or cyclopropyl; and the remainder of the variables are as defined in the 8 embodiment, the 9 embodiment, the I0 m embodiment, or the l l m embodiment.
  • R hydrogen, fluorine, bromine, methyl, or OCH 3 ; and the remainder of the variables are as defined in the 8 th embodiment, the 9 th embodiment, the 10 th embodiment, or the 11 th embodiment.
  • the compound has the structure of any one of Formulas (I) - (XIII), wherein R 20 is hydrogen or halogen; and the remainder of the variables are as defined in any one of the 8 th embodiment, the 9 th embodiment, the 10 th embodiment, the 11 th embodiment, or the 12 th embodiment.
  • R 20 is hydrogen, fluorine, or chlorine; and the remainder of the variables are as defined in the 8 th embodiment, the 9 th embodiment, the 10 th embodiment, the 11 th embodiment, or the 12 th embodiment.
  • the compound has the structure of any one of Formulas (X) -
  • R is hydrogen or C 1 -C 4 -alkyl
  • R 2 is hydrogen or methyl
  • the remainder of the variables are defined in the 8 th embodiment, the 9 th embodiment, the 10 th embodiment, the 11 th embodiment, the 12 th embodiment, or the 13 th embodiment.
  • the compound has the structure of any one of Formulas (I) -
  • the compound has
  • R is hydrogen,fluorine, bromine, methyl, or OCH 3 ; and R is hydrogen, fluorine, or chlorine.
  • the invention is any one of the compounds depicted in the exemplification section of the instant application; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention.
  • the invention is any one of the compounds depicted in Examples 8 A - 8BB; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention.
  • the invention is any one of Compounds 8a - 8bb; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention.
  • Methods of treating a PPAR5-related disease or condition in a subject are disclosed.
  • the methods can include administering to the subject a therapeutically effective amount of one or more compounds or compositions provided herein.
  • the PPAR5-related disease is a mitochondrial disease.
  • mitochondrial diseases include, but are not limited to, Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia , Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and stroke-like episodes, MERRF-Myoclonic epilepsy and ragged-red fiber disease, NARP-neurogenic muscle weakness, ataxia, and retinitis pigmentosa, and Pearson Syndrome.
  • KSS Kearns-Sayra Syndrome
  • LHON Leber Hereditary Optic Neuropathy
  • MELAS-Mitochondrial myopathy encephalomyopathy
  • lactic acidosis lactic acidosis
  • stroke-like episodes MERRF-Myoclonic epilepsy and ragged-red fiber disease
  • the PPAR5-related disease is a vascular disease (such as a cardiovascular disease or any disease that would benefit from increasing vascularization in tissues exhibiting impaired or inadequate blood flow).
  • the PPAR5- related disease is a muscular disease, such as a muscular dystrophy. Examples of muscular dystrophy include but are not limited to Duchenne muscular dystrophy, Becker muscular dystrophy, limb-girdle muscular dystrophy, congenital muscular dystrophy,
  • facioscapulohumeral muscular dystrophy myotonic muscular dystrophy, oculopharyngeal muscular dystrophy, distal muscular dystrophy, and Emery-Dreifuss muscular dystrophy.
  • the PPAR5-related disease or condition is a demyelinating disease, such as multiple sclerosis, Charcot-Marie-Tooth disease, Pelizaeus-Merzbacher disease, encephalomyelitis, neuromyelitis optica, adrenoleukodystrophy, or Guillian-Barre syndrome.
  • demyelinating disease such as multiple sclerosis, Charcot-Marie-Tooth disease, Pelizaeus-Merzbacher disease, encephalomyelitis, neuromyelitis optica, adrenoleukodystrophy, or Guillian-Barre syndrome.
  • the PPAR5-related disease is a metabolic disease.
  • metabolic diseases include but are not limited to obesity, hypertriglyceridemia,
  • the PPAR5-related disease is a muscle structure disorder.
  • a muscle structure disorders include, but are not limited to, Bethlem myopathy, central core disease, congenital fiber type disproportion, distal muscular dystrophy (MD), Duchenne & Becker MD, Emery-Dreifuss MD, facioscapulohumeral MD, hyaline body myopathy, limb-girdle MD, a muscle sodium channel disorders, myotonic chondrodystrophy, myotonic dystrophy, myotubular myopathy, nemaline body disease, oculopharyngeal MD, and stress urinary incontinence.
  • the ⁇ -related disease is a neuronal activation disorder
  • neuronal activation disorders include, but are not limited to, amyotrophic lateral sclerosis, Charcot-Marie-Tooth disease, Guillain-Barre syndrome, Lambert-Eaton syndrome, multiple sclerosis, myasthenia gravis, nerve lesion, peripheral neuropathy, spinal muscular atrophy, tardy ulnar nerve palsy, and toxic myoneural disorder.
  • the ⁇ -related disease is a muscle fatigue disorder.
  • muscle fatigue disorders include, but are not limited to chronic fatigue syndrome, diabetes (type I or II), glycogen storage disease, fibromyalgia, Friedreich's ataxia, intermittent claudication, lipid storage myopathy, MELAS, mucopolysaccharidosis, Pompe disease, and thyrotoxic myopathy.
  • the ⁇ -related disease is a muscle mass disorder.
  • muscle mass disorders include, but are not limited to, cachexia, cartilage degeneration, cerebral palsy, compartment syndrome, critical illness myopathy, inclusion body myositis, muscular atrophy (disuse), sarcopenia, steroid myopathy, and systemic lupus erythematosus.
  • the ⁇ -related disease is a beta oxidation disease.
  • beta oxidation diseases include, but are not limited to, systemic carnitine transporter, carnitine palmitoyltransferase (CPT) II deficiency, very long- chain acyl- CoA dehydrogenase (LCHAD or VLCAD) deficiency, trifunctional enzyme deficiency, medium - chain acyl - CoA dehydrogenase (MCAD) deficiency, short - chain acyl- CoA dehydrogenase (SCAD) deficiency, and riboflavin - responsive disorders of ⁇ -oxidation (RR -MADD).
  • CPT carnitine palmitoyltransferase
  • LCHAD or VLCAD very long- chain acyl- CoA dehydrogenase
  • MCAD medium - chain acyl - CoA dehydrogenase
  • SCAD short - chain acyl- CoA dehydrogenase
  • RR -MADD ribofla
  • the PPAR0-related disease is a vascular disease.
  • vascular diseases include, but are not limited to, peripheral vascular insufficiency, peripheral vascular disease, intermittent claudication, peripheral vascular disease (PVD), peripheral artery disease (PAD), peripheral artery occlusive disease (PAOD), and peripheral obliterative arteriopathy.
  • the PPAR5-related disease is an ocular vascular disease.
  • ocular vascular diseases include, but are not limited to, age-related macular degeneration (AMD), stargardt disease, hypertensive retinopathy, diabetic retinopathy, retinopathy, macular degeneration, retinal haemorrhage, and glaucoma.
  • AMD age-related macular degeneration
  • stargardt disease hypertensive retinopathy
  • diabetic retinopathy retinopathy
  • macular degeneration macular degeneration
  • retinal haemorrhage and glaucoma.
  • the PPAR5-related disease is a muscular eye disease.
  • muscular eye diseases include, but are not limited to, strabismus (crossed eye/wandering eye/walleye ophthalmoparesis), progressive external ophthalmoplegia, esotropia, exotropia, a disorder of refraction and accommodation, hypermetropia, myopia, astigmatism, anisometropia, presbyopia, a disorders of accommodation, or
  • the ⁇ -related disease is a metabolic disease.
  • metabolic disorders include, but are not limited to, hyperlipidemia,
  • dyslipidemia hyperchlolesterolemia, hypertriglyceridemia, HDL hypocholesterolemia, LDL hypercholesterolemia and/or HLD non-cholesterolemia, VLDL hyperproteinemia, dyslipoproteinemia, apolipoprotein A-I hypoproteinemia, atherosclerosis, disease of arterial sclerosis, disease of cardiovascular systems, cerebrovascular disease, peripheral circulatory disease, metabolic syndrome, syndrome X, obesity, diabetes (type I or II), hyperglycemia, insulin resistance, impaired glucose tolerance, hyperinsulinism, diabetic complication, cardiac insufficiency, cardiac infarction, cardiomyopathy, hypertension, non-alcoholic fatty liver disease (NAFLD), nonalcoholic steatohepatitis (NASH), thrombus, Alzheimer disease, neurodegenerative disease, demyelinating disease, multiple sclerosis, adrenal leukodystrophy, dermatitis, psoriasis, acne, skin aging, trichosis, inflammation, arthritis, asthma,
  • hypersensitive intestine syndrome hypersensitive intestine syndrome, ulcerative colitis, Crohn's disease, and pancreatitis.
  • the ⁇ -related disease is cancer.
  • cancer include, but are not limited to, cancers of the colon, large intestine, skin, breast, prostate, ovary, and/or lung.
  • compositions include one or more compounds provided herein (such as 1, 2, 3, 4 or 5 of such compounds), and typically at least one additional substance, such as an excipient, a known therapeutic other than those of the present disclosure, and combinations thereof.
  • the disclosed PPAR agonists can be used in combination with other agents known to have beneficial activity with the disclosed PPAR agonists.
  • disclosed compounds can be administered alone or in combination with: one or more other PPAR agonists, such as a thiazolidinedione, including rosiglitazone, pioglitazone, troglitazone, and combinations thereof, or a
  • sulfonylurea agent or a pharmaceutically acceptable salt thereof such as tolbutamide, tolazamide, glipizide, carbutamide, glisoxepide, glisentide, glibornuride, glibenclamide, gliquidone glimepiride, gliclazide and the pharmaceutically acceptable salts of these compounds, or muraglitazar, farglitazar, naveglitazar, netoglitazone, rivoglitazone, K-l l l, GW-677954, (-)-Halofenate, acid, arachidonic acid, clofbrate, gemfibrozil, fenofibrate, ciprofibrate, bezafibrate, lovastatin, pravastatin, simvastatin, mevastatin, fluvastatin, indomethacin, fenoprofen, ibuprofen, and the pharmaceutically acceptable salts of these
  • disclosed compounds may be administered in combination with dexamphetamine, amphetamine, mazindole or phentermine; and administered in combination with medicaments having an anti-inflammatory effect.
  • the pharmaceutical compositions provided herein can be administered as a combination therapy with one or more pharmacologically active substances having favorable effects on metabolic disturbances or disorders.
  • the disclosed pharmaceutical compositions may be administered in combination with RXR agonists for treating metabolic and cardiovascular diseases medicaments, which lower blood glucose; antidiabetics, such as insulins and insulin derivatives, including Lantus, Apidra, and other fast-acting insulins, and GLP-1 receptor modulators; active ingredients for treating dyslipidemias; anti-atherosclerotic medicaments; anti-obesity agents; anti-inflammatory active ingredients; active ingredients for treating malignant tumors; anti-thrombotic active ingredients; active ingredients for treating high blood pressure; active ingredients for treating heart failure, and combinations thereof.
  • RXR agonists for treating metabolic and cardiovascular diseases medicaments, which lower blood glucose
  • antidiabetics such as insulins and insulin derivatives, including Lantus, Apidra, and other fast-acting insulins, and GLP-1 receptor modulators
  • active ingredients for treating dyslipidemias anti-
  • Skeletal muscle relies on the resident progenitor cells, the satellite cells, for postnatal growth and regeneration. Therefore, maintaining an adequate number and proper function of satellite cells is critical for muscle to appropriately response to damage. While endurance exercise promotes adaptive responses in the muscle, including an increase in the satellite cell number, it is not known whether transcriptionally directed "endurance exercise training" has similar effects.
  • mice harboring constitutively active PPAR5 in skeletal muscle displayed an accelerated regenerative process in muscle after an acute injury. Gene expression analyses showed earlier resolution of the inflammatory response and induction of myogenic markers, indicating that PPAR5 activation induces a temporal shift in the regenerative process.
  • PPAR5 activation induced the expression of FGF1, which is known to be involved in muscle development and regeneration.
  • FGFla isoform which may be responsible for supporting cell proliferation and reestablishment of vasculature to augment the
  • PPAR5 peroxisome proliferator activated receptor ⁇
  • VP16-PPAR5 mice Wang et al, Cell 113: 159-170 (2003) were bred to CB6F1 strain (Jackson Laboratories) and used as heterozygotes in experiments. The non-transgenic littermates served as controls. All experiments were performed when animals were 8 weeks of age.
  • Nestin-GFP mice (Mignone et al, J Comp Neurol 469(3):311-324 (2004)) were kindly provided by Dr. Fred Gage at the Salk Institute for Biological Studies. B. Freeze burn injury
  • TA muscles were injured according to previously published methods with a few modifications (Brack et al., Science 317(5839):807-810 (2007)).
  • a stainless steel lg weight (Mettler- Toledo) equilibrated to the temperature of dry ice was placed directly on the exposed TA for 10 seconds. Following the thermal injury, incision was closed using
  • Tissues were dehydrated in series of solutions with increasing percentage of ethanol. Dehydrated tissues were cleared in xylene and allowed for paraffin to permeate over night at 60 °C. Tissues were then embedded in plastic molds.
  • Paraffin embedded tissue blocks were sectioned at 7 ⁇ thick on Leica Jung 2500
  • Microtome Sections were stained with hematoxylin and counter stained with 1% eosin. Slides were dried and mounted with Entellan mounting media (EMS). Three random non- overlapping fields were photographed for analysis. Regenerating fiber number was measured by counting the number of discernible muscle fibers with centralized myonuclei (Ge et ah, Am J Physiol Cell Physiol 297 (6):C1434- 1444 (2009)). Regenerating fiber cross sectional area (CSA) was measured using Image J software.
  • EMS Entellan mounting media
  • Injured animals were injected with Evans Blue dye according published protocol (Hamer et al, J Anat 200(Pt l):69-79 (2002)).
  • Sterile 1% w/v Evans Blue dye in PBS was intraperitoneally injected at 1% volume relative to the body mass of an animal.
  • injured TA muscles were harvested and snap-frozen by isopentane quenching in liquid nitrogen.
  • Frozen sections were cut in ⁇ thickness, fixed in ice-cold acetone, dipped in xylene and mounted with DPX. Proportion of the stained area over the total area was measured using ImageJ software.
  • BrdU 50 mg/kg body weight of BrdU (Sigma) was injected intraperitoneally as solution of 10 mg/mL BrdU in saline. TA muscles were harvested at 7 days after injury and processed for paraffin sections as described above. BrdU incorporation was visualized using the BrdU Labeling and Detection Kit I (Roche) and BrdU+ nuclei were counted and represented as a proportion of total nuclei in a field.
  • Either whole or partial gastrocnemius muscle was digested in 2% collagenase I (Sigma) in DMEM with 10% FBS for 60 minutes at 37 °C. Muscle tissue was further mechanically digested by triturating with fire polished wide bore Pasteur pipet. Liberated fibers were washed in two changes of PBS with 10%FBS and finally mounted on glass slides with Vectashield mounting media (Vector Labs).
  • Satellite cells were harvested from TA of 8 weeks old animals according to published protocols with some modifications (Day et al. (2007) Nestin-GFP reporter expression defines the quiescent state of skeletal muscle satellite cells.
  • Digested tissues were filtered through 40 micron cell strainer and washed with equal volume of DMEM with 20% horse serum. Cells were spun down at lOOOg for 10 minutes and resuspended in sorting buffer (DMEM with 10% FBS). Cells were separated from larger debris by 20%/60% Percoll gradient (Yablonka-Reuveni Z et al. (1987) Isolation and clonal analysis of satellite cells from chicken pectoralis muscle. Dev Bio 119: 252-259). GFP positive cells were sorted on BD FACSAria II sorter.
  • Muscle specific activation of PPAR5 confers regenerative advantage While it has been shown that the majority of the metabolic genes are down regulated in this model, PPAR5 expression was induced over 2 fold at 2 days after the injury (Warren et al. (2007) Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models. J Physiol. 582.2: 825-841, FIG. 1A). This injury dependent up- regulation of PPAR5 strongly suggested a possible role for PPAR5 during the early part of the regenerative process.
  • Freeze burn injury was used to elicit the regenerative program, which has been shown to model the standard course of regenerative response, including satellite cell activation (Karpati and Molnar. "Muscle fibre regeneration in human skeletal muscle diseases.” In: Schiaffino S, Partridge T (eds). Skeletal muscle repair and regeneration. Springer, Dordrecht, 2008). Additionally, since the injury is directly applied to the surface of the muscle, it is highly localized and reproducible.
  • Skeletal muscle regeneration is an intricately orchestrated process involving a variety of cell types.
  • immune cells both neutrophils and macrophages
  • are necessary for the proper progression of regenerative process (Zacks et al., Muscle Nerve 5: 152-161 (1982); Grounds et al, Cell Tissue Res 250:563-569 (1987); Teixeira et al, Muscle Nerve 28(4):449-459 (2003); Summan et al., Am J Physiol Regul Integr Comp Physiol 290:R1488- R1495 (2006); Contreras-Shannon et al., Am J Physiol Cell Physiol 292:C953-967 (2007); Segawa et al., Exp Cell Res 314(17):3232-3244 (2008)).
  • various cytokines are necessary to promote chemotaxis of monocytes and also to directly regulate the activities of myogenic cells (Warren et al., Am J Physiol Cell Physiol 286(5):C
  • PPAR5 activation appears to control a network of genes involved directly in myogenesis and also in remodeling and repair processes after the injury.
  • Underlying phasic progression of the regenerative program is a temporally
  • TG animals respond and resolve their inflammatory responses more efficiently, which is consistent with the accelerated restoration of muscle morphology observed.
  • TG animals also show higher expression of perinatal myosin heavy chain gene, Myh8, at 7 days post injury, indicating more efficient reassembly of the contractile properties (FIG. 2E).
  • PPAR5 activation leads to a temporal shift in the expression patterns of regenerative markers, which together with the histology data, shows a role of PPAR5 in increasing regenerative efficiency.
  • Example4 PPAR5 directs neo-vascularization via regulation of FGFl
  • This example describes adaptive responses bestowed by PPAR5 activation in the muscle which may contribute to the observed beneficial effects on regeneration.
  • Increased vasculature is one of the hallmarks of oxidative myofibers, which facilitates introduction of immune cells and also supports increased number of satellite cells.
  • TG animals show increased expression of FGFl in TA muscle (FIG. 3D).
  • TG animals Upon injury, TG animals maintain high expression of FGFl expression (FIG. 3D).
  • Immuno staining transverse sections of uninjured TA from WT and TG animals revealed 36% increase in the number of CD31+ capillaries per field by PPAR5 activation (FIGS. 3A-C).
  • TG animals show increased expression of CD31, which is indicative of increased vascularity (FIG. 3E-F).
  • FGF1 has been shown to be expressed in regenerating fibers in chronic disease models and has been implicated in myogenesis and regeneration (Oliver, Growth Factors. 1992;7(2):97-106, 1992; Saito, 2000, Muscle Nerve. 23(4):490-7) and to increase microvasculature in adipocytes and PPAR5 directly regulates expression of FGFla isoform (Jonker, et al., Nature.
  • One of the first events following the injury is the proliferation of muscle resident progenitors, the satellite cells. This example describes results showing that the regenerative advantage observed in TG animals could be due to altered satellite cell homeostasis.
  • Nestin expression was used as a marker of satellite cells, and nestin-GFP;VP16- PPAR5 double transgenic animals were used to genetically label quiescent satellite cells(SCs) in vivo (Mignone et al, J Comp Neurol 469(3):311-324 (2004); Day et al, Dev Biol
  • Satellite cell activity was measured as myoblast proliferation elicited by the freeze burn injury in vivo.
  • BrdU was intraperitoneally injected at 12 hrs, 24 hrs and 2 days after the injury and the muscles were harvested 7 days after the injury to calculate the ratio of BrdU+ to total nuclei.
  • TG animals showed 40-60% increase in the number of BrdU+ proliferating cells at all three injection times (FIG. 4C). Therefore, PPAR5 induced increase in the number of quiescent satellite cells yields higher number of fusion competent myoblasts, leading to the enhancement of regenerative capacity of the muscle.
  • PPAR5 activation expedites skeletal muscle regeneration following an acute thermal injury.
  • VP 16- PPAR5 transgenic animals showed increased satellite cell proliferation at the early phase of the regenerative process, which subsequently translated into increased CSA and the number of nascent regenerating fibers.
  • muscle specific over expression of PPAR5 seems to increase the resident satellite cell pool.
  • Increased satellite cell population on a muscle fiber seems to contribute to the accelerated resolution of the injury.
  • PPAR5 activation seems to promote rapid emergence of nascent fibers after the injury. There being no evidence of hyperplasia at 21 days after the injury when the regenerative process is essentially complete, it is concluded that the additional nascent fibers efficiently fuse with each other to restore mature fibers (Karpati G, Molnar MJ in Skeletal muscle repair and regeneration, eds Schiaffino S, Partridge T (Springer, Dordrecht), (2008)).
  • PPAR5 activation can bestow infinite abundance of satellite cell population throughout the life of an organism.
  • GW501516 While enhancement in regenerative capacity was observed in both genetic and pharmacological models, the inherent differences in the experimental parameters is acknowledged. Orally administered GW501516 was delivered systemically, presumably activating PPAR5 in a variety of organs and cell types in the animal. However, in VP16- PPAR5 animals, activation of the PPAR5 receptors is limited to the mature muscle fibers. Additionally, genetic background of the animals may affect the efficiency of regeneration after an injury (Grounds and McGeachie, Cell Tissue Res 255(2):385-391 (1989); Roberts et al., J Anat 191:585-594 (1997)). Extramuscular effects of PPAR5 agonist administration may require further investigation when considering clinical use of GW501516 to augment muscle injury treatment. Recently, pharmacological activation of PPAR5 has been shown to improve sarcolemmal integrity in mdx mice (Miura et al., Hum mol Genet 18(23):4640-4649 (2009)
  • PPAR5 not only controls running endurance and metabolic parameters in the muscle, but also its regenerative program.
  • PPAR5 activation affects multiple facets of the regenerative program, exerting comprehensive but transient effects to expedite the progress.
  • PPAR5 may be pharmacologically targeted to enhance the regenerative capacity of the muscle after injury and possibly other degenerative conditions where satellite cell function is compromised.
  • PPAR5 activation can be used to treat other degenerative conditions such as aging induced satellite cell dysfunction and ensuing sarcopenia.
  • CV-1 cells were grown in DMEM+10 charcoal stripped FCS. Cells were seeded into 384- well plates the day before transfection to give a confluency of 50-80% at transfection. A total of 0.8 g DNA containing 0.64 micrograms pCMX-PPARDelta LBD, 0.1 micrograms pCMX.beta.Gal, 0.08 micrograms pGLMH2004 reporter and 0.02 micrograms pCMX empty vector was transfected per well using FuGene transfection reagent according to the manufacturer's instructions (Roche). Cells were allowed to express protein for 48 h followed by addition of compound.
  • Plasmids Human PPAR5 was used to PCR amplify the PPAR5 LBD.
  • the amplified cDNA ligand binding domain (LBD) of PPAR5 isoform was (PPAR5 amino acid 128 to C- terminus) and fused to the DNA binding domain (DBD) of the yeast transcription factor GAL4 by subcloning fragments in frame into the vector pCMX GAL (Sadowski et al. (1992), Gene 118, 137) generating the plasmids pCMX-PPARDelta LBD. Ensuing fusions were verified by sequencing.
  • the pCMXMH2004 lucif erase reporter contains multiple copies of the GAL4 DNA response element under a minimal eukaryotic promoter (Hollenberg and Evans, 1988). pCMXpGal was generated.
  • Luciferase assay Medium including test compound was aspirated and washed with PBS. 50 ⁇ PBS including 1 mM Mg++ and Ca++ were then added to each well. The luciferase assay was performed using the LucLite kit according to the manufacturer's instructions (Packard Instruments). Light emission was quantified by counting on a Perkin Elmer Envision reader. To measure 3-galactosidase activity 25 ⁇ supernatant from each transfection lysate was transferred to a new 384 microplate. Beta-galactosidase assays were performed in the microwell plates using a kit from Promega and read in a Perkin Elmer Envision reader. The beta-galactosidase data were used to normalize (transfection efficiency, cell growth etc.) the luciferase data.
  • the activity of a compound is calculated as fold induction compared to an untreated sample. For each compound the efficacy (maximal activity) is given as a relative activity compared to GW501516, a PPAR5 agonist.
  • the EC 50 is the concentration giving 50% of maximal observed activity. EC 50 values were calculated via non-linear regression usingGraphPad PRISM (GraphPad Software, San Diego, Calif.).
  • NHR Nuclear Hormone Receptor
  • PathHunter NHR cell lines were expanded from freezer stocks according to standard procedures. Cells were seeded in a total volume of 20 ⁇ L into white walled, 384-well microplates and incubated at 37 °C for the appropriate time prior to testing. Assay media contained charcoal-dextran filtered serum to reduce the level of hormones present.
  • Agonist Format For agonist determination, cells were incubated with sample to induce response. Intermediate dilution of sample stocks was performed to generate 5X sample in assay buffer. 5 ⁇ L of 5X sample was added to cells and incubated at 37 °C or room temperature for 3-16 hours. Final assay vehicle concentration was 1%.
  • Antagonist Format For antagonist determination, cells were pre-incubated with antagonist followed by agonist challenge at the EC 80 concentration. Intermediate dilution of sample stocks was performed to generate 5X sample in assay buffer. 5 ⁇ L of 5X sample was added to cells and incubated at 37 °C or room temperature for 60 minutes. Vehicle concentration was 1%. 5 ⁇ L ⁇ of 6X EC 80 agonist in assay buffer was added to the cells and incubated at 37 °C or room temperature for 3- 16 hours.
  • Assay signal was generated through a single addition of 12.5 or 15 ⁇ L (50% v/v) of PathHunter Detection reagent cocktail, followed by a one hour incubation at room temperature. Microplates were read following signal generation with a PerkinElmer EnvisionTM instrument for chemiluminescent signal detection.
  • % Activity 100% x (mean RLU of test sample— mean RLU of vehicle control) / (mean MAX control ligand— mean RLU of vehicle control).
  • % Inhibition 100% x (1— (mean RLU of test sample— mean RLU of vehicle control) / (mean RLU of EC 80 control— mean RLU of vehicle control)).
  • % Inverse Agonist Activity 100% x ((mean RLU of vehicle control— mean RLU of test sample) / (mean RLU of vehicle control— mean RLU of MAX control)).
  • PK profile of several PPAR5 agonists disclosed herein in male CD-I mice or Wistar rats was determined. Similar methods can be used to analyze other compounds provided herein.
  • mice_PK_IV_Cl 27.0 mL/min/kg
  • Reagents and Conditions a) mCPBA, Et 2 0, -30°C to 0°C, 12 h, 57%; b) NaI0 4 , 1,4- dioxane, H 2 0, RT, 24 h, 100%; c) Jones reagent, acetone, RT, 78%; d) H 2 S0 4 , MeOH, RT, 97%; e) CBr 4 , PPh 3 , THF, RT, 4 h, 72%.
  • R1 Me, iPr Reagents and Conditions: a) MeNH 2 .HCl, Et 3 N, NaBH 4 , MeOH, RT.
  • R 2 H, F, CI
  • R2 H, F, CI
  • Step 1 Synthesis of (E)-5-(3,3-dimethyloxiran-2-yl)-3-methylpent-2-en-l-yl acetate
  • Step-7 Synthesis of 4-(furan-2-yl)benzoic acid (Compound 8a-vii):
  • Step-9 Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)- -methylhex-4-enoate (Compound 8a-ix):
  • Step-2 Synthesis of methyl (E)-4-methyl-6- [2- [[methyl-(4-phenylbenzoyl)amino] methyl] phenoxy]hex-4-enoate (Compound 8b-ii):
  • Step-3 Synthesis of(E)-4-methyl-6-[2-[[methyl-(4-phenylbenzoyl) amino] methyl] phenoxy] hex-4-enoic acid (Compound 8b-iii):
  • Step-2 Synthesis of 3-fluoro-4-(furan-2-yl)-N-(2-hydroxybenzyl)-N-methylbenzamide
  • Step-4 Synthesis of (E)-6-(2-((3-fluoro-4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)- -methylhex-4-enoic acid (Compound 8c)
  • Step-2 Synthesis of 3-chloro-4-(furan-2-yl)-N-(2-hydroxybenzyl)-N-methylbenzamide
  • Step-3 Synthesis of methyl (E)-4-methyl-6-(2-((N-methyl-4-(5-methylfuran-2-yl) benzamido) methyl )phenoxy)hex-4 -enoate (Compound 8e-iii):
  • Step-4 Synthesis of (E)-4-methyl-6-(2-((N-methyl-4-( 5-methylfuran-2-yl)benzamido ) methyl)phenoxy)hex-4-enoic acid (Compound 8e):
  • Step-2 Synthesis ofN-(5-fluoro-2-hydroxybenzyl)-4-(furan-2-yl)-N-methylbenzamide
  • Step-3 Synthesis of methyl (E)-6-(4-fluoro-2-((4-(furan-2-yl)-N-methylbenzamido) meth l)phenoxy)-4-methylhex-4-enoate (Compound 8g-iii):
  • Step-4 Synthesis of (E)-6-(4-fluoro-2-((4-(furan-2-yl)-N-methylbenzamido) methyl )phenoxy)- -methylhex-4-enoic acid (Compound 8g):
  • Reagents and conditions a) Raney nickel, EtOH, H 2 (atm), RT, 5 h; b) LiOH.H 2 0, THF, EtOH, H 2 0, RT.
  • Step-1 Synthesis of methyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-4- methylhexanoate ( Compound 8h-i)
  • Step-2 Synthesis of6-(2-((4-(furan-2-yl)-N-me ⁇ hylbenzamido)me ⁇ hyl)phenoxy)-4- methylhexanoic acid (Compound 8h):
  • Step-2 Synthesis of ethyl (E)-6-((tert-butyldiphenylsilyl)oxy)-3-methylhex-2-enoate
  • reaction mixture Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water and extracted with EtOAc (2 xlOO mL). The organic extract was washed with brine (100 mL) and dried over anhydrous Na 2 S0 4 . The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 2% EtOAc in hexanes) to afford the title compound. Yield: 0.185 g (30.6%)
  • Step-3 Synthesis of ethyl (E)-6-hydroxy-3-methylhex-2-enoate (Compound 8i-iii):
  • Step-4 Synthesis of ethyl (E)-6-bromo-3-methylhex-2-enoate (Compound 8i-iv): The title compound was synthesized from ethyl (E)-6-hydroxy-3-methylhex-2-enoate (0.33 g, 1.90 mmol) following the experimental procedure described in step-2 of Example 8CC.
  • Reagents and conditions a) NiCl 2 6H 2 0, NaBH 4 , MeOH; b) LiOH.H 2 0, THF, EtOH, H 2 0.
  • Step-1 Synthesis of ethyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-3- methylhexanoate (Compound 8j-i):
  • Step-2 Synthesis of6-(2-( ( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy )-3- methylhexanoic acid (Compound 8j):
  • the title compound was synthesized from ethyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-3-methylhexanoate (0.15 g, 0.32 mmol) following the experimental procedure described in step-4 of Example 8CC.
  • Reagents and conditions a) (l-Ethoxycarbonylethylidene)triphenylphosphorane, Mn0 2 , DCM, 12h; b) CBr 4 , PPh 3 , THF, RT, 12 h.
  • Step-1 Synthesis of ethyl (E)-6-hydroxy-2-methylhex-2-enoate (Compound 8k-i):
  • Step-2 Synthesis of ethyl (E)-6-bromo-2-methylhex-2-enoate (Compound 8k-ii):
  • Reagents and conditions a) TBDMSCl, imidazole, DCM, RT, 12h; b) Mn0 2 , DCM, 12 h, RT; c) MeNH 2 .HCl, NaBH 4 , MeOH, 12 h, RT; d) 4-(Furan-2-yl)benzoic acid, EDCI.HC1, HOBt, Et 3 N, DMF, RT; e) Mn0 2 , DCM, 12 h, RT; f) Ethyl 6-hexanoate
  • triphenylphosphonium bromide K 2 C0 3 , 18-Crown-6, THF, 12 h, 60°C; g) LiOH.H 2 0, THF, EtOH, H 2 0, 12 h, RT.
  • Step-1 Synthesis of (2-(((tert-butyldimethylsilyl)oxy)methyl)phenyl)methanol (Compound HI-
  • Step-2 Synthesis of2-(((tert-but ldimethylsilyl)oxy)methyl)benzaldehyde (Compound 8C-ii) :
  • Step-3 Synthesis of l-(2-(((tert-butyldimethylsilyl)oxy)methyl)phenyl)-N-methylmethanamine (Compound 8 ⁇ - ⁇ ):
  • reaction mixture Upon completion of reaction (TLC), the reaction mixture was diluted with cold water, and extracted with EtOAc (30 mL x 2). The combined organic extract was washed with saturated NaHC0 3 , brine and dried over anhydrous Na 2 S0 4 . The solution was concentrated under reduced pressure and residue obtained was purified by silica gel column chromatography (elution, 10% EtOAc in hexanes) to yield the title compound. Yield: 1.0 g (65.4%).
  • Step-5 Synthesis ofN-(2-formylbenzyl)-4-(furan-2-yl)-N-methylbenzamide (Compound 81-
  • Step-6 Synthesis of ethyl (E)-7-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenyl)hept- -enoate (Compound 8 ⁇ - ⁇ ):
  • reaction mixture was stirred at 60°C for 12 h.
  • TLC Upon completion of reaction (TLC), the reaction mixture was diluted with ethyl acetate (100 mL) and extracted with water (100 mL). The organic extract was washed with brine, dried over anhydrous Na 2 S0 4 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 28% EtOAc in hexanes) to yield the title compound. Yield: 0.21 g (36.1%).
  • Step-2 Synthesis of methyl 2-(4-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl) henoxy)methyl)phenyl)acetate (Compound 8m-ii):
  • Step-3 Synthesis of2-(4-( (2-((4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) methyl )pheny I )acetic acid (Compound 8m):
  • Step-3 - Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4- methylphenoxy)-4-methylhex-4-enoate (Compound 8n-iii):
  • Step 4 Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4-methylphenoxy)- -methylhex-4-enoic acid (Compound 8n):
  • Step-1 Synthesis of diethyl 2-(4-bromobutyl)-2-methylmalonate (Compound 8o-i):
  • Step-4 Synthesis of methyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2- meth lhexanoate (Compound 8o-iv):
  • Step-5 Synthesis of6-(2-( ( 4-(furan-2-yl )-N-methylbenzamido )methyl )phenoxy )-2- meth lhexanoic acid (Compound 8o):
  • Reagents and conditions a) Methyl acrylate, Pd(OAc) 2 , PPh 3 ' Et 3 N, DMF, 100°C; b) NaBH 4 , NiCl 2 .6H 2 0, MeOH, RT, 3 h; c) CBr 4 , PPh 3 , THF, RT, 3 h.
  • Reagents and conditions a) Methyl 3-(3-(bromomethyl)phenyl)propanoate, K 2 C0 3 , DMF, 80°C, 3 h; b) LiOH.H 2 0, THF, EtOH, H 2 0, RT, 12 h.
  • Step-1 Synthesis of methyl (E)-3-(3-formylphenyl)acrylate (Compound 8p-i):
  • reaction mixture Upon completion of reaction (TLC), the reaction mixture was poured into ice cold water and extracted with EtOAc (2x 100 mL). The combined organic extract was dried over anhydrous Na 2 S0 4 . The solvent was removed under reduced pressure to get the crude residue. The residue obtained was purified by silica gel column chromatography (elution, 20% EtOAc in hexanes) to afford the title compound. Yield: 2.01 g (87.0%).
  • Step-2 Synthesis of methyl 3-(3-(hydroxymethyl)phenyl)propanoate (Compound 8p-ii):
  • Step-3 Synthesis of methyl 3-(3-(bromomethyl)phenyl)propanoate (Compound 8p-iii):
  • Step-5 Synthesis of3-(3-( (2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) meth l )pheny I propanoic acid (Compound 8p):
  • Reagents and conditions a) NBS, benzoylperoxide, CC1 4 , 80°C, 12 h.
  • Reagents and conditions a) Ethyl 2-(3-(bromomethyl)phenyl)acetate, K 2 C0 3 , DMF, 80°C, 3 h; b) LiOH.H 2 0, THF, EtOH, H 2 0, RT, 12 h.
  • Step-2 Synthesis of ethyl 2-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) meth l )pheny I )acetate (Compound 8q-ii):
  • Step-3 Synthesis of2-(3-((2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) meth l )pheny I )acetic acid (Compound 8q):
  • Reagents and conditions a) Ethyl chloroacetate, K 2 C0 3 , DMF, 60°C, 4 h; b) NaBH 4 , MeOH, RT, 1 h; c) CBr 4 , PPh 3 , THF, RT, 12 h.
  • Step-1 Synthesis of ethyl 2-(3-formylphenoxy)acetate (Compound 8r-i):
  • Step-2 Synthesis of methyl 2-(3-(hydroxymethyl)phenoxy)acetate ( Compound Hr-ii):
  • Step-4 Synthesis of methyl 2-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl)
  • Reagents and conditions a) Ethyl 6-bromo-2, 2-dimethylhexanoate, K 2 C0 3 , DMF, 70°C, 12 h; b) LiOH.H 2 0, THF, EtOH, H 2 0, RT, 12 h.
  • Step-3 Synthesis of6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2,2- dimeth lhexanoic acid (Compound 8s):
  • Reagents and conditions a) Ethyl diazoacetate, C11SO 4 , cyclohexane, 80°C, 18 h.
  • reaction mixture Upon completion of reaction (TLC), the reaction mixture was cooled to RT and filtered through a silica gel (60-120 mesh) pad and washed with 30% EtOAc in hexanes. The combined filtrate was concentrated under reduced pressure and residue obtained was further purified by silica gel column chromatography (gradient elution, 0-10% EtOAc in hexanes) to afford the title compound. Yield: 6.7 g (85.8%).
  • Step-3 Synthesis of2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) ropyl)cyclopropane-l -carboxylic acid (Compound 8t):
  • Step-2 Synthesis of ethyl 2-((3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) ropyl)thio)acetate (Compound 8y-ii):
  • Step-3 Synthesis of2-((3-(2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) ropyl)thio)acetic acid (Compound 8y):
  • Step-2 Synthesis of ethyl 6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl) phenoxy) - -dimethylhexanoate (Compound 8z-ii):
  • Step-3 Synthesis of6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl)phenoxy)-2, 2- dimethylhexanoic acid (Compound 8z):
  • HPLC 99.45 %. (210 nm).
  • PdCl 2 (dppf).CH 2 Cl 2 , 1,4-dioxane, KOAc, 90°C, 12 h; d) NaB0 3 .4H 2 0, THF, H 2 0, RT, 15 h; e) Methyl (E)-6-bromo-4-methylhex-4-enoate, K 2 C0 3 , DMF, RT, 12 h; f) LiOH.H 2 0, THF, MeOH, H 2 0, RT, 1 h.
  • Step-1 Synthesis of 1 -(2-bmmo-5-(trifluoromethyl)phenyl)-N-methylmethanamine
  • Step-2 Synthesis ofN-(2-bromo-5-(trifluoromethyl)benzyl)-4-(furan-2-yl)-N- methylbenzamide (Compound 8aa-ii):
  • Step-3 Synthesis of4-(furan-2-yl)-N-methyl-N-(2-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- -5-(trifluoromethyl)benzyl)benzamide (Compound 8aa-iii):
  • N-(2-bromo-5-(trifluoromethyl)benzyl)-4-(furan- 2-yl)-N-methylbenzamide (0.25 g, 0.57 mmol) and bis(pinacolato)diboron (0.725 g, 2.85 mmol) were dissolved in degassed 1,4-dioxane (10 mL) at RT under nitrogen atmosphere.
  • PdCl 2 (dppf).CH 2 Cl 2 (0.093 g, 0.11 mmol) and KOAc (0.28 g, 2.85 mmol) were sequentially added to the above solution under nitrogen atmosphere.
  • reaction mixture was degassed by purging with argon gas for 15 min and reaction mixture was heated at 90°C for 12 h.
  • reaction mixture was cooled to RT, diluted with cold water and extracted with ethyl acetate (3 x 50 mL). The combined organic extract was washed with brine, dried over anhydrous Na 2 S0 4 and concentrated under reduced pressure to get the title compound. Yield: 0.20 g (72.2%).
  • Step-4 Synthesis of4-(furan-2-yl)-N-(2-hydroxy-5-(trifluoromethyl)benzyl)-N- methylbenzamide (Compound 8aa-iv):
  • Step-5 Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4- (trifluoromethyl)phenoxy)-4-methylhex-4-enoate (Compound 8aa-v):
  • Step-6 Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4-(trifluoromethyl) phenoxy)-4-methylhex-4-enoic acid (Compound 8aa):

Abstract

Provided herein are compounds of formula (I) useful for the treatment of PPAR-delta related diseases (e.g. mitochondrial diseases, muscular diseases, vascular diseases, demyelinating diseases and metabolic diseases).

Description

PPAR AGONISTS, COMPOUNDS, PHARMACEUTICAL COMPOSITIONS, AND
METHODS OF USE THEREOF
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims benefit of priority to U.S. Provisional Patent Application No. 62/061,430, filed October 8, 2014. The content of this application is incorporated herein by reference in its entirety.
FIELD
This application concerns agonists of peroxisome proliferator- activated receptors (PPAR), particularly PPAR delta (PPAR5), and methods for their use, such as to treat or prevent one or more PPAR5-related diseases.
ACKNOWLEDGMENT OF GOVERNMENT SUPPORT
This invention was made with government support under DK057978-32 awarded by the National Institutes of Health. The United States government has certain rights in the invention.
BACKGROUND
Peroxisome proliferator- activated receptor delta (PPAR5) is a nuclear receptor that is capable of regulating mitochondria biosynthesis. As shown in PCT/US2014/033088 (incorporated herein by reference), modulating the activity of PPAR5 is useful for the treatment of diseases, developmental delays, and symptoms related to mitochondrial dysfunction, such as Alpers's Disease, MERRF-Myoclonic epilepsy and ragged-red fiber disease, Pearson Syndrome, and the like. Modulation PPAR5 activity is effective in the treatment of other conditions, such as muscular diseases, demyelinating diseases, vascular diseases, and metabolic diseases. Indeed, PPAR5 is an important biological target for compounds used to help treat and prevent mitochondrial diseases, muscle -related diseases and disorders, and other related conditions.
Accordingly, there remains a need in the art for novel compounds capable of effectively and reliably activating PPAR5 in vitro and in vivo. There is also a need for PPAR5 activating compounds with improved pharmacokinetic properties and improved metabolic stability. The present invention addresses these and other such needs.
SUMMARY Provided herein, inter alia, are compounds and compositions comprising such compounds that are useful for increasing PPAR5 activity. In particular, disclosed herein are methods modulating the activity of PPAR5 for the treatment of diseases, developmental delays, and symptoms related to mitochondrial dysfunction (see, e.g. , Examples 1 - 7). For example, the disclosed compounds and compositions are useful in the treatment of mitochondrial diseases, such as Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia, Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and strokelike episodes, MERRF-Myoclonic epilepsy and ragged-red fiber disease, NARP-neurogenic muscle weakness, ataxia, and retinitis pigmentosa, and Pearson Syndrome. Alternatively, the disclosed compounds and compositions are useful in the treatment of other PPAR5-related diseases, such as muscular diseases, demyelinating diseases, vascular diseases, and metabolic diseases.
In one embodiment, provided herein is a compound of Formula (I):
Figure imgf000003_0001
(i);
or a pharmaceutically acceptable salt thereof,
wherein:
® Θ
Z is CH, N, or N"° ;
Ring A is optionally substituted (e.g. , with halogen, Ci-Gralkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, C1-C4-haloalkoxy, or C3-C6-cycloalkyl) phenylene when Z is CH, optionally substituted (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy, or C3-C6-cycloalkyl) pyridinylene when Z is N, or optionally substituted (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, C1-C4-haloalkoxy, or
Θ Θ
C3-C6-cycloalkyl) N-oxide pyridinylene when Z is ^ ; Ar is optionally substituted (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy, or C3-C6-cycloalkyl) 5 or 6-membered monocyclic arylene
2 3 or heteroarylene, provided that when Ar is 5-membered heteroarylene, R and -C(0)NR - are oriented 1, 3 to each other on the ring, wherein position 1 is the point of attachment of Ar to the -C(0)NR3-; or
Ar is optionally substituted 9- or 10-membered fused bicyclic heteroarylene;
R1 is -OR1A or-NR1AR1B;
R1A, R1B are each independently hydrogen or Ci-C4-alkyl;
W is O, and L is -(CH2)n- wherein n is an integer between 1 and 6, and one or more (CH2) is replaced with -CH2-CH(CH3)-, -CH(CH3)-CH2- -CH2-C(CH3)2- , -C(CH3)2-
CH2- , -HC=C(CH3)-, -(CH3)C=CH-,
Figure imgf000004_0001
, _CH2-0-CH2-, -CH2-S-CH2-, -CH2- CH(F)-, -CH(F)-CH2- -CH2-CF2-, -CF2-CH2-, -CH2-C(0)-, -C(0)-CH2-, optionally substituted arylene (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci C4-haloalkoxy, or C3-C6-cycloalkyl), optionally substituted arylene ether (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, C1-C4-haloalkoxy, or C3-C6-cycloalkyl), or optionally substituted heteroarylene (e.g. , with halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy, or C3-C6-cycloalkyl); or
W is CH2, CH=CH, or C≡C, and L is -(CH2)n-, wherein n is an integer between 1 and 6, and one or more (CH2) is optionally replaced with -CH2-CH(CH )-, -CH(CH )-
CH2- -CH2-C(CH3)2- , -C(CH3)2-CH2- , -HC=C(CH3)-, -(CH3)C=CH-,
Figure imgf000004_0002
CH2-0-CH2-, -CH2-S-CH2-, -CH2-CH(F)-, -CH(F)-CH2-, -CH2-CF2-, -CF2-CH2-, - CH2-C(0)-, or -C(0)-CH2-;
21
each R is independently hydrogen, halogen, or Ci-C4-alkyl;
R is halogen, Ci-C4-alkyl, C3-C6-cycloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy,
Figure imgf000004_0003
5- or 6-membered heterocycloalkyl, -≡-R2A, -0(CH2)mR2B, NH(Ci- C4-alkyl), N(Ci-C4-alkyl)2, C(0)(Ci-C4 -alkyl), optionally substituted aryl, or optionally substituted 5-membered heteroaryl;
m is an integer having an a value of 0, 1, 2, or 3;
2A 2B
R^ and R are each independently Ci-C4-alkyl, C3-C6-cycloalkyl, or Ci-C4 haloalkyl; R3 is Ci-C4-alkyl, , O , or Ci-C4-haloalkyl; and
each R4 is independently H, D, or F;
with the proviso that the compound is not selected from the group consisting
Figure imgf000005_0001
Figure imgf000006_0001
or a pharmaceutically acceptable salt thereof.
Exemplary substituents for Ar and Ring A are independently selected from halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy, and C3-C6-cycloalkyl.
Pharmaceutical compositions of compounds of Formula (I) also are disclosed herein. Particular embodiments comprise a pharmaceutically acceptable excipient and one or more of the disclosed compounds, or a pharmaceutically acceptable salt thereof. The pharmaceutical compositions of the invention can be used in therapy, e.g. , for treating a ΡΡΑΡνδ-related disease or condition in a subject.
Another embodiment comprises treating a ΡΡΑΡνδ-related disease or condition in a subject by administering to the subject a therapeutically effective amount of one or more disclosed compounds, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising the compound(s).
Also provided herein is the use of one or more of the disclosed compounds, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising one or more of the disclosed compounds, for the preparation of a medicament for the treatment of a PPAR5-related disease or condition.
In another embodiment, provided herein the disclosed compounds, or a
pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising one or more of the disclosed compoundsfor use in treating a PPAR5-related disease or condition.
BRIEF DESCRIPTION OF THE DRAWINGS Figures 1A and IB are bar graphs showing recovery of damaged muscle fibers after injury.
Figures 1C-1F show VP16-PPAR5 transgenic animals exhibit accelerated muscle regeneration after acute injury. All error bars are SEM. Figure 1C provides two images of transverse sections of TA of WT and TG animals, with damaged fibers stained by Evans Blue dye 5 days after the injury. Figure ID provides the proportion of stained area over the total cross- sectional area (CSA) of TA (n=5; **P<0.01). Figure IE provides quantification of Evans Blue stain at 12 hours after injury (n=3). Figure IF provides quantification of Evans Blue stain at 36 hours after injury (n=3).
Figures 1G-1J illustrate VP16-PPAR5 transgenic animals that exhibit accelerated muscle regeneration after acute injury. All error bars are SEM. *P<0.05; **P<0.01;
***P<0.001; n.s =not significant. Figure 1G provides H&E stained transverse sections of injured transversus abdominis muscle (TVA) from wildtype (WT) and transgenic (TG) animals. Representative images are from 3, 5 and 7 days after injury. Arrows = regenerating fibers with centralized nuclei. Arrowheads = hollowed remains of basal lamina. Asterisks = uninjured fibers. Figure 1H illustrates the average number of regenerating fibers per field. Figure II illustrates the average CSA of regenerating myofiber (n=5 for day 5; n=l 1 for day 7). Figure 1J illustrates the average CSA of regenerating myofiber, 21 days after injury (n=5).
Figures 2A-2E illustrate that PPAR5 activation promotes a temporal shift in gene expression profile of the regenerative process. *P<0.05. All error bars are SEM. Figure 2A providesa GO classification of injury specific upregulated genes in TG (n=3). Figure 2B shows the relative expression of regeneration markers in TG. Figure 2C is a graph of relative expression versus days post injury, illustrating post injury temporal gene expression profiles of inflammatory marker CD68, measured by QPCR (n=5). Figure 2D is a graph of relative expression versus days post injury, illustrating post injury temporal gene expression profiles of a myogenic marker MyoD by Q-PCR (n=5). Figure 2E is a bar graph showing the Myh8 mRNA level 5 days post injury (n>5).
Figures 3A-3G illustrate that PPAR5 regulates FGFl a to promote micro- vascularization. *P<0.05; **P<0.01. All error bars are SEM. Figure 3A provides immunofluorescence staining for CD31 on transverse sections of uninjured TA from WT and TG animals. Figure 3B provides quantification of CD31 positive capillary number (n=4). Figure 3C illustrates the FGFl a mRNA level in TA of WT and TG by QPCR (n=5). Figure 3D provides a Western blot for FGFl. Figure 3E provides immunofluorescence staining for CD31 positive capillaries on transverse sections of TA, 5 days after the injury (n=3). Figure 3F provides quantification for CD31 positive capillaries on transverse sections of TA, 5 days after the injury (n=3). Figure 3G provides luciferase reporter assays of FGFla promoter co- transfected with PPAR5 with or without the ligand, GW501516.
Figures 4A-4E illustrate that the skeletal muscle specific activation of PPAR5 increases the quiescent satellite cell pool. All error bars are SEM. *P<0.05; **P<0.01.
Figure 4A provides digital images of isolated myofibers from lateral gastrocnemius of 8- week-old nestin reporter mice with or without VP16-PPAR5 transgene. Figure 4B is a bar graph showing quantification of GFP+ satellite cells per unit length of myofiber (n=3).
Figure 4C is a bar graph showing the proportion of BrdU positive nuclei at 0.5, 1 and 2 days after injury (n=5). Figure 4D is a bar graph showing VP 16 mRNA levels in whole TA or satellite cells (SC) from WT and TG. Figure 4E is a bar graph showing PPAR5 mRNA levels in whole TA or satellite cells (SC) from WT and TG.
Figures 5A-5E illustrate that acute pharmacological activation of PPAR5 confers regenerative advantage. *P<0.05; **P<0.01; ***P<0.001. All error bars are SEM. Figure 5A is a series of bar graphs showing PPAR5 target gene expression in TA after 9 day treatment with either vehicle or GW501516 (n=6). Figure 5B provides digital images of transverse TA sections showing Evans Blue dye uptake 5 days after the injury. Figure 5C is a bar graph showing the proportions of stained area (n=5) in the images of Figure 5B.
Figure 5D is a bar graph showing the percentage of BrdU positive nuclei 2 days after injury (n=4). Figure 5E is a series of bar graphs showing TNFa and F480 levels 3 days after injury measured by QPCR (n=6).
Figures 6A-6E show VP16-PPAR5 transgenic animals exhibit accelerated muscle regeneration after the acute injury. All error bars are SEM. Figure 6A shows werum creatine kinase levels in wildtpe and VP16-PPAR5 transgenic animals. Figure 6B shows transverse sections of TA of WT and TG animals. Staining of damaged fibers by Evans Blue dye 5 days after the injury. Figure 6C shows proportion of stained area over the total CSA of TA (n=5; **P<0.01). Figures 6D and 6E show quantification of Evans Blue stain at 12 and 36 hours after injury (n=3).
Figure 7A shows transverse sections of TA of WT and TG animals. Staining of damaged fibers by Evans Blue 3 days after the injury.
Figure 7B shows Injury dependent induction of PPAR5 by QPCR (n=5).
Figure 7C shows post injury temporal gene expression profiles of inflammatory markers TNFcc.
Figure 7D shows induction of VEGFa in TA muscle, as measured by Western Blot, in TG animals.
Figure 7E shows quantification of TNFa Western Blot.
Figure 8 is a line graph depicting the IV exposure in mice of several PPAR5 agonists over the course of four hours.
DETAILED DESCRIPTION
"Peroxisome proliferator- activated receptor delta" or "PPAR-δ", also known as peroxisome proliferator- activated receptor beta (PPAR-β) or as NR1C2 (nuclear receptor subfamily 1, group C, member 2), refers to a nuclear receptor protein that function as a transcription factor regulating the expression of genes. Ligands of PPAR5 can promote myoblast proliferation after injury, such as injury to skeletal muscle. PPAR5 (OMIM
600409) sequences are publically available, for example from GenBank® sequence database (e.g., accession numbers NP_001165289.1 (human, protein) NP_035275 (mouse, protein), NM_001171818 (human, nucleic acid) and NM_011145 (mouse, nucleic acid)).
Herein, the phrase "PPAR5 agonist" refers to substances that increace the activity of
PPAR5. Substances can be tested for their PPAR5 agonist activity by contacting the substance with cells expressing PPAR5, detecting their binding with PPAR5 and then detecting signals that serve as the indicator of the activation of PPAR5. Definitions
The term "alkyl" used alone or as part of a larger moiety, such as "alkoxy",
"haloalkyl", "cycloalkyl", "heterocycloalkyl", and the like, means saturated aliphatic straight- chain or branched monovalent hydrocarbon radical. Unless otherwise specified, an alkyl group typically has 1 to 4 carbon atoms, i.e., C1-C4-alkyl. As used herein, a "C1-C4-alkyl" group is means a radical having from 1 to 4 carbon atoms in a linear or branched
arrangement.
"Alkoxy" means an alkyl radical attached through an oxygen linking atom, represented by -O-alkyl. For example, "Ci-Cs-alkoxy" includes methoxy, ethoxy, propoxy, and butoxy.
The terms "haloalkyl" and "haloalkoxy" mean alkyl or alkoxy, as the case may be, substituted with one or more halogen atoms.
The term "halogen" means fluorine or fluoro (F), chlorine or chloro (CI), bromine or bromo (Br), or iodine or iodo (I).
The term "ring" used herein means a cyclic group, which includes cycloalkyl, heterocycloaklyl, aryl, and heteroaryl, each of which can be monocyclic, bicyclic {e.g., a bridged bicyclic ring) or polycyclic {e.g., tricyclic) for cycloalkyl and heterocycloalkyl, or fused for aryl and heteroaryl.
The term "aryl group" means an aromatic hydrocarbon ring system having six to fourteen carbon ring atoms. The term "aryl" may be used interchangeably with the terms "aryl ring", "aromatic ring", "aryl group", and "aromatic group". An aryl group typically has six to fourteen ring atoms. An "aryl group" also includes an aromatic ring fused to a non- aromatic carbocylic ring. Examples of aryl groups include phenyl, naphthyl, anthracenyl, 1,2- dihydronaphthyl, 1,2,3,4-tetrahydronaphthyl, fluorenyl, indanyl, indenyl and the like. A "substituted aryl group" is substituted at any one or more substitutable ring atom, which is a ring carbon atom bonded to a hydrogen. "Arylene" is a bivalent aryl group, i.e., having two point of attachment to the remainder of the molecule.
"Cycloalkyl" means a 3-12 membered saturated aliphatic cyclic hydrocarbon radical.
It can be monocyclic, bicyclic {e.g., a bridged bicyclic ring), polycyclic {e.g., tricyclic), or fused. For example, monocyclic C3-C6-cycloalkyl means a radical having from 3 to 6 carbon atoms arranged in a monocyclic ring. A C3-C6-cyclo alkyl includes, but is not limited to, cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
"Heterocycloalkyl" means a saturated or unsaturated non-aromatic 3 to 12 membered ring radical optionally containing one or more double bonds. It can be monocyclic, bicyclic {e.g., a bridged bicyclic ring), or polycyclic {e.g., tricyclic). The heterocycloalkyl contains 1 to 4 heteroatoms, which may be the same or different, selected from N, O or S. The heterocycloalkyl ring optionally contains one or more double bonds and/or is optionally fused with one or more non-aromatic carbocyclic rings, aromatic rings (e.g. , phenyl ring) or heteroaryl rings. "5- or 6-membered monocyclic heterocycloalkyl" means a radical having from 5 or 6 ring atoms (including 1 to 3 ring heteroatoms) arranged in a monocyclic ring. Examples of heterocycloalkyl include, but are not limited to, morpholinyl, thiomorpholinyl, pyrrolidinonyl, pyrrolidinyl, piperidinyl, piperazinyl, hydantoinyl, valerolactamyl, dihydroimidazole, dihydrofuranyl, dihydropyranyl, dihydropyridinyl, dihydropyrimidinyl, dihydrothienyl, dihydrothiophenyl, dihydrothiopyranyl, tetrahydroimidazole,
tetrahydrofuranyl, tetrahydropyranyl, tetrahydrothienyl, tetrahydropyridinyl,
tetrahydropyrimidinyl, tetrahydrothiophenyl, and tetrahydrothiopyranyl.
The term "heteroaryl", "heteroaromatic", "heteroaryl ring", "heteroaryl group", "hetero aromatic ring", and "heteroaromatic group", are used interchangeably herein.
"Heteroaryl" when used alone or as part of a larger moiety as in "hetero aralkyl" or
"hetero arylalkoxy", refers to aromatic ring groups having five to fourteen ring atoms selected from carbon and at least one (typically 1 to 4, more typically 1 or 2) heteroatoms (e.g. , oxygen, nitrogen or sulfur). "Heteroaryl" includes monocyclic rings and polycyclic rings in which a monocyclic heteroaromatic ring is fused to one or more other aromatic or
heteroaromatic rings. "Heteroarylene" is a bivalent heteroaryl group, i.e., having two point of attachment to the remainder of the molecule.
"Monocyclic 5- or 6-membered heteroaryl" means a monocyclic aromatic ring system having five or six ring atoms selected from carbon and at least one (typically 1 to 3, more typically 1 or 2) heteroatoms (e.g. , oxygen, nitrogen or sulfur). Examples of monocyclic 5-6 membered heteroaryl groups include furanyl (e.g. , 2-furanyl, 3-furanyl), imidazolyl (e.g. , N- imidazolyl, 2-imidazolyl, 4-imidazolyl, 5-imidazolyl), isoxazolyl (e.g. , 3-isoxazolyl, 4- isoxazolyl, 5-isoxazolyl), oxadiazolyl (e.g. , 2-oxadiazolyl, 5-oxadiazolyl), oxazolyl (e.g. , 2- oxazolyl, 4-oxazolyl, 5-oxazolyl), pyrazolyl (e.g. , 3-pyrazolyl, 4-pyrazolyl), pyrrolyl (e.g. , 1- pyrrolyl, 2-pyrrolyl, 3-pyrrolyl), pyridyl (e.g. , 2-pyridyl, 3-pyridyl, 4-pyridyl), pyrimidinyl (e.g. , 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl), pyridazinyl (e.g. , 3-pyridazinyl), thiazolyl (e.g. , 2-thiazolyl, 4-thiazolyl, 5-thiazolyl), isothiazolyl, triazolyl (e.g. , 2-triazolyl, 5-triazolyl), tetrazolyl (e.g. , tetrazolyl), and thienyl (e.g. , 2-thienyl, 3-thienyl). Examples of polycyclic aromatic heteroaryl groups include carbazolyl, benzimidazolyl, benzothienyl, benzofuranyl, isobenzofuranyl, indolyl, benzotriazolyl, benzothiazolyl, benzoxazolyl, quinolinyl, isoquinolinyl, indazolyl, isoindolyl, acridinyl, or benzisoxazolyl. A "substituted heteroaryl group" is substituted at any one or more substitutable ring atom, which is a ring carbon or ring nitrogen atom bonded to a hydrogen.
The term "fused" as used herein refers to any combination of two or more cycloalkyl, heterocycloalkyl, aryl, and/or heteroaryl rings that share two adjacent ring atoms.
The term "bridged" as used herein refers to two carbocyclic refers to any combination of two cycloalkyl or heterocycloalkyl rings that share three or more adjacent ring atoms.
If a group is described as being "substituted", a non-hydrogen substituent is in the place of a hydrogen substituent on a carbon, sulfur or nitrogen of the substituent. Thus, for example, a substituted alkyl is an alkyl wherein at least one non-hydrogen substituent is in the place of a hydrogen substituent on the alkyl substituent. To illustrate, monofluoroalkyl is alkyl substituted with a fluoro substituent, and difluoroalkyl is alkyl substituted with two fluoro substituents. It should be recognized that if there is more than one substitution on a substituent, each non-hydrogen substituent can be identical or different (unless otherwise stated).
If a group is described as being "optionally substituted", the substituent can be either
(1) not substituted, or (2) substituted.
If a list of groups are collectively described as being optionally substituted by one or more of a list of substituents, the list can include: (1) unsubstitutable groups, (2) substitutable groups that are not substituted by the optional substituents, and/or (3) substitutable groups that are substituted by one or more of the optional substituents.
If a group is described as being optionally substituted with up to a particular number of non-hydrogen substituents, that group can be either (1) not substituted; or (2) substituted by up to that particular number of non-hydrogen substituents or by up to the maximum number of substitutable positions on the substituent, whichever is less. Thus, for example, if a group is described as a heteroaryl optionally substituted with up to 3 non-hydrogen substituents, then any heteroaryl with less than 3 substitutable positions would be optionally substituted by up to only as many non-hydrogen substituents as the heteroaryl has
substitutable positions.
Unless otherwise indicated, suitable substituents for substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl groups include the groups represented by
halogen, -CN, -ORc, -NRaRb, -C(=0)ORc, -OC(=0)ORc, -C(=0)NReRf, -NRdC(=0)Rc, -NRd (C=0)ORc, -0(C=0)NReRf, -NRd(C=0)NReRf, -C(=0)Rc, (d-C6)alkyl, cycloalkyl, cycloalkyl(C1-C4)alkyl, heterocycloalkyl, heterocycloalkyl(C1-C4)alkyl, aryl, aryl(Cr C4)alkyl, heteroaryl, and heteroaryl(C1-C4)alkyl, wherein Ra and Rb are each independently selected from -H and (Ci-C6)alkyl, optionally substituted with 1 to 3 substituents
independently selected from halogen, hydroxy, -NRgRh and (C1-C3)alkoxy; Rc is -H or (Q- C6)alkyl, optionally substituted with 1 to 3 substituents independently selected from halogen, -NRgRh, hydroxy and (C1-C3)alkoxy; Rd is -H or (C1-C6)alkyl, optionally substituted with 1 to 3 substituents independently selected from halogen, -NRgRh, hydroxy and (Ci-C3)alkoxy; and Re and Rf are each independently selected from -H and (C1-C6)alkyl optionally substituted with 1 to 3 substituents independently selected from halogen, -NRgRh, hydroxy and (Ci-C3)alkoxy; or Re and Rf, together with the nitrogen to which they are attached, form a 3-8 membered ring optionally substituted with 1 to 3 substituents independently selected from halogen, -NRgRh, -CN, (d-C6)alkyl, halo(d-C6)alkyl, (Ci-C3)alkoxy, halo(Ci- C3)alkoxy, and (C1-C3)alkoxy(C1-C6)alkyl. Each of the (C1-C6)alkyl, cycloalkyl, cycloalkyl(C1-C3)alkyl, heterocycloalkyl, heterocycloalkyl(C1-C3)alkyl, aryl, aryl(Cr C3)alkyl, heteroaryl and heteroaryl(C1-C3)alkyl substituents is optionally substituted with halogen, -N02, -CN, -NRdC(=0)Rc, -NRgRh, (Ci-C4)alkyl, (Ci-C4)haloalkyl, (C
C4)alkoxy(C1-C4)alkyl, (Ci-C4)alkoxy, and (C1-C4)haloalkoxy, wherein Rg and Rh are each independently selected from -H, (Ci-C6)alkyl, halo(C1-C6)alkyl, hydroxy(Ci-C6)alkyl and (C1-C3)alkoxy(C1-C6)alkyl. Suitable substituents for a substituted alkyl, cycloalkyl, heterocycloalkyl can also include =0. Alternatively, suitable substituents for substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl groups include alkyl, haloalkyl, alkoxy, haloalkoxy, cyano, and halogen.
Compounds having one or more chiral centers can exist in various stereoisomer^ forms. Stereoisomers are compounds that differ only in their spatial arrangement. When a disclosed compound is named or depicted by structure without indicating stereochemistry, it is understood that the name or the structure encompasses one or more of the possible stereoisomers, or geometric isomers, or a mixture of the encompassed stereoisomers or geometric isomers.
When a geometric isomer is depicted by name or structure, it is to be understood that the geometric isomeric purity of the named or depicted geometric isomer is at least 60%, 70%, 80%, 90%, 99% or 99.9% pure by weight. Geometric isomeric purity is determined by dividing the weight of the named or depicted geometric isomer in the mixture by the total weight of all of the geomeric isomers in the mixture. It includes a single stereoisomers free of the other stereoisomers, or, alternatively, mixtures of the stereoisomers. Racemic mixture means 50% of one enantiomer and 50% of is corresponding enantiomer. When a compound with one chiral center is named or depicted without indicating the stereochemistry of the chiral center, it is understood that the name or structure encompasses both possible enantiomeric forms (e.g. , both enantiomerically-pure, enantiomerically-enriched or racemic ) of the compound. When a compound with two or more chiral centers is named or depicted without indicating the stereochemistry of the chiral centers, it is understood that the name or structure encompasses all possible diasteriomeric forms (e.g. , diastereomerically pure, diastereomerically enriched and equimolar mixtures if one or more diastereomers e.g., racemic mixtures) of the compound.
Enantiomeric and diastereomeric mixtures can be resolved into their component enantiomers or stereoisomers by well-known methods, such as chiral-phase gas
chromatography, chiral-phase high performance liquid chromatography, crystallizing the compound as a chiral salt complex, or crystallizing the compound in a chiral solvent.
Enantiomers and diastereomers also can be obtained from diastereomerically- or
enantiomerically-pure intermediates, reagents, and catalysts by well-known asymmetric synthetic methods.
When a compound is designated by a name or structure that indicates a single enantiomer, unless indicated otherwise, the compound is at least 60%, 70%, 80%, 90%, 99% or 99.9% optically pure (also referred to as "enantiomerically pure"). Optical purity is the weight in the mixture of the named or depicted enantiomer divided by the total weight in the mixture of both enantiomers.
When the stereochemistry of a disclosed compound is named or depicted by structure, and the named or depicted structure encompasses more than one stereoisomer (e.g. , as in a diastereomeric pair), it is to be understood that one of the encompassed stereoisomers or any mixture of the encompassed stereoisomers are included. It is to be further understood that the stereoisomeric purity of the named or depicted stereoisomers at least 60%, 70%, 80%, 90%, 99% or 99.9% by weight. The stereoisomeric purity in this case is determined by dividing the total weight in the mixture of the stereoisomers encompassed by the name or structure by the total weight in the mixture of all of the stereoisomers.
Included in the present teachings are pharmaceutically acceptable salts of the compounds disclosed herein. The disclosed compounds have basic amine groups and therefore can form pharmaceutically acceptable salts with pharmaceutically acceptable acid(s). Suitable pharmaceutically acceptable acid addition salts of the compounds described herein include salts of inorganic acids (such as hydrochloric acid, hydrobromic, phosphoric, nitric, and sulfuric acids) and of organic acids (such as, e.g., acetic acid, benzenesulfonic, benzoic, methanesulfonic, and p-toluenesulfonic acids). Compounds of the present teachings with acidic groups such as carboxylic acids can form pharmaceutically acceptable salts with pharmaceutically acceptable base(s). Suitable pharmaceutically acceptable basic salts include ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts).
As used herein, the term "pharmaceutically-acceptable salt" refers to pharmaceutical salts that are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, and allergic response, and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically-acceptable salts are well known in the art. For example, S. M. Berge, et al. describes pharmacologically acceptable salts in J. Pharm. Set, 1977, 66: 1-19.
The neutral forms of the compounds of the invention are regenerated from their corresponding salts by contacting the salt with a base or acid and isolating the parent compound in the conventional manner. The parent form of the compound may differ from the various salt forms in certain physical properties, such as solubility in polar solvents. The neutral forms of compounds disclosed herein also are included in the invention.
The terms "administer", "administering", "administration", and the like, as used herein, refer to methods that may be used to enable delivery of compositions to the desired site of biological action. These methods include, but are not limited to, intraarticular (in the joints), intravenous, intramuscular, intratumoral, intradermal, intraperitoneal, subcutaneous, orally, topically, intrathecally, inhalationally, transdermally, rectally, and the like.
Administration techniques that can be employed with the agents and methods described herein are found in e.g., Goodman and Gilman, The Pharmacological Basis of Therapeutics, current ed.; Pergamon; and Remington's, Pharmaceutical Sciences (current edition), Mack Publishing Co., Easton, Pa.
As used herein, the terms "co-administration", "administered in combination with", and their grammatical equivalents, are meant to encompass administration of two or more therapeutic agents to a single subject, and are intended to include treatment regimens in which the agents are administered by the same or different route of administration or at the same or different times. In some embodiments the one or more compounds described herein will be coadministered with other agents. These terms encompass administration of two or more agents to the subject so that both agents and/or their metabolites are present in the subject at the same time. They include simultaneous administration in separate compositions,
administration at different times in separate compositions, and/or administration in a composition in which both agents are present. Thus, in some embodiments, the compounds described herein and the other agent(s) are administered in a single composition. In some embodiments, the compounds described herein and the other agent(s) are admixed in the composition.
Generally, an effective amount of a compound taught herein varies depending upon various factors, such as the given drug or compound, the pharmaceutical formulation, the route of administration, the type of disease or disorder, the identity of the subject or host being treated, and the like, but can nevertheless be routinely determined by one skilled in the art. An effective amount of a compound of the present teachings may be readily determined by one of ordinary skill by routine methods known in the art.
The term "effective amount" or "therapeutically effective amount" means an amount when administered to the subject which results in beneficial or desired results, including clinical results, e.g. , inhibits, suppresses or reduces the symptoms of the condition being treated in the subject as compared to a control. For example, a therapeutically effective amount can be given in unit dosage form (e.g. , 1 mg to about 50 g per day, altnernatively from 10 mg to about 5 grams per day; and in another alternatively from 10 mg to 1 gram per day).
The particular mode of administration and the dosage regimen will be selected by the attending clinician, taking into account the particulars of the case (e.g. the subject, the disease, the disease state involved, the particular treatment, and whether the treatment is prophylactic). Treatment can involve daily or multi-daily or less than daily (such as weekly or monthly etc.) doses over a period of a few days to months, or even years. However, a person of ordinary skill in the art would immediately recognize appropriate and/or equivalent doses looking at dosages of approved compositions for treating a PPAR5 related disease using the disclosed PPAR agonists for guidance.
A "subject" is a mammal, preferably a human, but can also be an animal in need of veterinary treatment, e.g. , companion animals (e.g. , dogs, cats, and the like), farm animals (e.g. , cows, sheep, pigs, horses, and the like) and laboratory animals (e.g. , rats, mice, guinea pigs, and the like). "Pharmaceutically acceptable excipient" and "pharmaceutically acceptable carrier" refer to a substance that aids the formulation and/or administration of an active agent to and/or absorption by a subject and can be included in the compositions of the present disclosure without causing a significant adverse toxicological effect on the subject.
Non-limiting examples of pharmaceutically acceptable excipients include water, NaCl, normal saline solutions, lactated Ringer's, normal sucrose, normal glucose, binders, fillers, disintegrants, lubricants, coatings, sweeteners, flavors, salt solutions (such as Ringer's solution), alcohols, oils, gelatins, carbohydrates such as lactose, amylose or starch, fatty acid esters, hydroxymethycellulose, polyvinyl pyrrolidine, and colors, and the like. Such preparations can be sterilized and, if desired, mixed with auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with or interfere with the activity of the compounds provided herein. One of ordinary skill in the art will recognize that other pharmaceutical excipients are suitable for use with disclosed compounds.
Compounds of the Invention
Disclosed herein are embodiments of a compound having general Formula (I):
Figure imgf000017_0001
(I);
or a pharmaceutically acceptable salt thereof.
In a 1st embodiment, the com ound has the structure of Formula (II):
Figure imgf000017_0002
(ID;
or a pharmaceutically acceptable salt thereof, wherein Q 1 is CR 20 =CR 20 , N=CH,
Θ © © Θ
CH=N, 0-N=CH , HC=N-0 , 0r S; Q2 is CR20 or N; p is an integer having a value of 1 or 2; each R10 is independently hydrogen, halogen, Q-Gralkyl, C1-C4-haloalkyl, CN, C1-C4- alkoxy, Ci-C4-haloalkoxy, or 20
C3-C6-cycloalkyl; each R is independently hydrogen, halogen, C1-C4-alkyl, CN, or Ci-C4-alkoxy; and the remainder of the variables are as defined for Formula (I).
In a 2nd embodiment, the compound of the invention has the structure of any one of Formulas (III) - (IX):
Figure imgf000018_0001
(VIII); or
Figure imgf000019_0001
(IX);
or a pharmaceutically acceptable salt thereof.
In Formula (III), t is an integer having a value of 1 or 2; and the remainder of the variables are as defined for Formula (II) in the 1st embodiment.
In Formulas (IV) - (VII), t is an integer having a value of 1 or 2; and the remainder of the variables are as defined for Formula (II) in the 1st embodiment.
In Formula (VIII) and (IX), q is an integer having a value of 0 or 1; X is O® ; γ S
JN when q is 1; or Y is N when q is 0; and the remainder of the variables are as defined for Formula (II) in the 1st embodiment. In certain embodiments, q is 0. Alternatively, q is 1.
In a 3 rd embodiment, the compound has the structure of any one of Formulas (X) -
(XIII):
Figure imgf000019_0002
(XII); or
Figure imgf000020_0001
(Xiii);
or a pharmaceutically acceptable salt thereof.
In Formula (X) - (XIII), Q 2 (where present) is CR 20 or N; p and t are integers each independently having a value of 1 or 2; each R10 is independently hydrogen, halogen, Ci-C4- alkyl, C1-C4-haloalkyl, CN, Ci-C4-alkoxy, Ci-C4-haloalkoxy, or 20
C3-C6-cycloalkyl; each R is independently hydrogen, halogen, Ci-C4-alkyl, CN, or Ci-C4-alkoxy; and the remainder of the variables are as defined for Formula (I).
In an 4th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein Z is CH, and the remainder of the variables are as defined in the 1st embodiment, the 2nd embodiment, or the 3rd embodiment.
In a 5th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein L is selected from the group consisting of:
Figure imgf000020_0002
and the remainder of the variables are as defined in the Is embodiment, the 2n embodiment, the 3rd embodiment, or the 4th embodiment.
In a 6th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein L is selected from the group consisting of:
Figure imgf000020_0003
and the remainder of the variables are as defined in the Is embodiment, the 21 embodiment, the 3rd embodiment, or the 4th embodiment. In a 7 embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein W is CH2, CH=CH, or C≡C, and the remainder of the variables are as defined in the 1st embodiment, the 2nd embodiment, the 3rd embodiment, the 4th embodiment, or the
5 embodiment.
In a 8th embodiment, the compound has the structure of any one of Formulas (I) -
(XIII), wherein W is O, and the remainder of the variables are as defined in the 1st embodiment, the 2nd embodiment, the 3rd embodiment, the 4th embodiment, the 5th embodiment, or the 6th embodiment.
In an 9th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein R3 is methyl, and the remainder of the variables are as defined in the 8th embodiment.
In a 10th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein R is phenyl, furanyl, thienyl, -^=-CF3> OCF3, or OCHF2, wherein the phenyl can be optionally substituted with halogen, CN, Ci-C4-alkyl, OH, Ci-C4 alkoxy, formyl, acetyl, acetoxy, or carboxyl, and wherein the furanyl and the thienyl each can be optionally substituted with Ci-C4-alkyl; and the remainder of the variables are as defined in the 7th embodiment and the 8th embodiment. In certain embodiments, R2 is unsubstituted phenyl, unsubstituted furanyl, 5-methyl-2-furanyl, -^=-CF3> OCF3, or OCHF2; and the remainder of the variables are as defined in the 8th embodiment or the 9th embodiment.
In an 11th embodiment, the compound has the structure of any one of Formulas (I) -
(XIII), wherein L is selected from the group consisting of:
Figure imgf000021_0001
of the variables are as defined in the 8 embodiment, the 9 embodiment, or the 10 embodiment. In preferred embodiments, L is
Figure imgf000021_0002
In an 12 embodiment, the compound has the structure of any one of Formulas (I)
(XIII), wherein R1U is hydrogen, halogen, methyl, CN, OCH3, CF3, OCF3, OCHF2, or cyclopropyl; and the remainder of the variables are as defined in the 8 embodiment, the 9 embodiment, the I0m embodiment, or the l lm embodiment. In particular embodiments, R hydrogen, fluorine, bromine, methyl, or OCH3; and the remainder of the variables are as defined in the 8th embodiment, the 9th embodiment, the 10th embodiment, or the 11th embodiment.
In a 13th embodiment, the compound has the structure of any one of Formulas (I) - (XIII), wherein R 20 is hydrogen or halogen; and the remainder of the variables are as defined in any one of the 8th embodiment, the 9th embodiment, the 10th embodiment, the 11th embodiment, or the 12th embodiment. In certain embodiments, R20 is hydrogen, fluorine, or chlorine; and the remainder of the variables are as defined in the 8th embodiment, the 9th embodiment, the 10th embodiment, the 11th embodiment, or the 12th embodiment.
In a 14th embodiment, the compound has the structure of any one of Formulas (X) -
9
(XIII), wherein R is hydrogen or C1-C4-alkyl, and the remainder of the variables are defined in any one of the 8th embodiment, the 9th embodiment, the 10th embodiment, the 11th embodiment, the 12th embodiment, or the 13th embodiment. In particular embodiments, R2 is hydrogen or methyl, and the remainder of the variables are defined in the 8th embodiment, the 9th embodiment, the 10th embodiment, the 11th embodiment, the 12th embodiment, or the 13th embodiment.
In a 15th embodiment, the compound has the structure of any one of Formulas (I) -
9
(XIII), wherein R is unsubstituted furanyl, and the remainder of the variables are defined in any one of the 8th embodiment, the 9th embodiment, the 10th embodiment, the 11th
embodiment, the 12th embodiment, the 13th embodiment. Alternatively, the compound has
9
the structure of any one of Formulas (I) - (XIII), wherein R is 5-methyl-2-furanyl, and the remainder of the variables are defined in the 8th embodiment, the 9th embodiment, the 10th embodiment the 11th embodiment, the 12th embodiment, or the 13th embodiment.
Figure imgf000022_0001
are 1; R is hydrogen,fluorine, bromine, methyl, or OCH3; and R is hydrogen, fluorine, or chlorine.
In certain embodiments, the invention is any one of the compounds depicted in the exemplification section of the instant application; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention. Specifically, the invention is any one of the compounds depicted in Examples 8 A - 8BB; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention. In preferred embodiments, the invention is any one of Compounds 8a - 8bb; pharmaceutically acceptable salts as well as the neutral forms of these compounds also are included in the invention.
Methods of Treatment
Methods of treating a PPAR5-related disease or condition in a subject are disclosed.. The methods can include administering to the subject a therapeutically effective amount of one or more compounds or compositions provided herein.
In one embodiment, the PPAR5-related disease is a mitochondrial disease. Examples of mitochondrial diseases include, but are not limited to, Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia , Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and stroke-like episodes, MERRF-Myoclonic epilepsy and ragged-red fiber disease, NARP-neurogenic muscle weakness, ataxia, and retinitis pigmentosa, and Pearson Syndrome.
In other embodiments, the PPAR5-related disease is a vascular disease (such as a cardiovascular disease or any disease that would benefit from increasing vascularization in tissues exhibiting impaired or inadequate blood flow). In other embodiments, the PPAR5- related disease is a muscular disease, such as a muscular dystrophy. Examples of muscular dystrophy include but are not limited to Duchenne muscular dystrophy, Becker muscular dystrophy, limb-girdle muscular dystrophy, congenital muscular dystrophy,
facioscapulohumeral muscular dystrophy, myotonic muscular dystrophy, oculopharyngeal muscular dystrophy, distal muscular dystrophy, and Emery-Dreifuss muscular dystrophy.
In some embodiments, the PPAR5-related disease or condition is a demyelinating disease, such as multiple sclerosis, Charcot-Marie-Tooth disease, Pelizaeus-Merzbacher disease, encephalomyelitis, neuromyelitis optica, adrenoleukodystrophy, or Guillian-Barre syndrome.
In other embodiments, the PPAR5-related disease is a metabolic disease. Examples of metabolic diseases include but are not limited to obesity, hypertriglyceridemia,
hyperlipidemia, hypoalphalipoproteinemia, hypercholesterolemia, dyslipidemia, Syndrome X, and Type II diabetes mellitus. In yet other embodiments, the PPAR5-related disease is a muscle structure disorder. Examples of a muscle structure disorders include, but are not limited to, Bethlem myopathy, central core disease, congenital fiber type disproportion, distal muscular dystrophy (MD), Duchenne & Becker MD, Emery-Dreifuss MD, facioscapulohumeral MD, hyaline body myopathy, limb-girdle MD, a muscle sodium channel disorders, myotonic chondrodystrophy, myotonic dystrophy, myotubular myopathy, nemaline body disease, oculopharyngeal MD, and stress urinary incontinence.
In still other embodiments, the ΡΡΑΡνδ-related disease is a neuronal activation disorder, Examples of neuronal activation disorders include, but are not limited to, amyotrophic lateral sclerosis, Charcot-Marie-Tooth disease, Guillain-Barre syndrome, Lambert-Eaton syndrome, multiple sclerosis, myasthenia gravis, nerve lesion, peripheral neuropathy, spinal muscular atrophy, tardy ulnar nerve palsy, and toxic myoneural disorder.
In other embodiments, the ΡΡΑΡνδ-related disease is a muscle fatigue disorder.
Examples of muscle fatigue disorders include, but are not limited to chronic fatigue syndrome, diabetes (type I or II), glycogen storage disease, fibromyalgia, Friedreich's ataxia, intermittent claudication, lipid storage myopathy, MELAS, mucopolysaccharidosis, Pompe disease, and thyrotoxic myopathy.
In some embodiments, the ΡΡΑΡνδ-related disease is a muscle mass disorder.
Examples of muscle mass disorders include, but are not limited to, cachexia, cartilage degeneration, cerebral palsy, compartment syndrome, critical illness myopathy, inclusion body myositis, muscular atrophy (disuse), sarcopenia, steroid myopathy, and systemic lupus erythematosus.
In other embodiments, the ΡΡΑΡνδ-related disease is a beta oxidation disease.
Examples of beta oxidation diseases include, but are not limited to, systemic carnitine transporter, carnitine palmitoyltransferase (CPT) II deficiency, very long- chain acyl- CoA dehydrogenase (LCHAD or VLCAD) deficiency, trifunctional enzyme deficiency, medium - chain acyl - CoA dehydrogenase (MCAD) deficiency, short - chain acyl- CoA dehydrogenase (SCAD) deficiency, and riboflavin - responsive disorders of β-oxidation (RR -MADD).
In some embodiments, the PPAR0-related disease is a vascular disease. Examples of vascular diseases include, but are not limited to, peripheral vascular insufficiency, peripheral vascular disease, intermittent claudication, peripheral vascular disease (PVD), peripheral artery disease (PAD), peripheral artery occlusive disease (PAOD), and peripheral obliterative arteriopathy. In other embodiments, the PPAR5-related disease is an ocular vascular disease.
Examples of ocular vascular diseases include, but are not limited to, age-related macular degeneration (AMD), stargardt disease, hypertensive retinopathy, diabetic retinopathy, retinopathy, macular degeneration, retinal haemorrhage, and glaucoma.
In yet other embodiments, the PPAR5-related disease is a muscular eye disease.
Examples of muscular eye diseases include, but are not limited to, strabismus (crossed eye/wandering eye/walleye ophthalmoparesis), progressive external ophthalmoplegia, esotropia, exotropia, a disorder of refraction and accommodation, hypermetropia, myopia, astigmatism, anisometropia, presbyopia, a disorders of accommodation, or
internal ophthalmoplegia.
In yet other embodiments, the ΡΡΑΡνδ-related disease is a metabolic disease.
Examples of metabolic disorders include, but are not limited to, hyperlipidemia,
dyslipidemia, hyperchlolesterolemia, hypertriglyceridemia, HDL hypocholesterolemia, LDL hypercholesterolemia and/or HLD non-cholesterolemia, VLDL hyperproteinemia, dyslipoproteinemia, apolipoprotein A-I hypoproteinemia, atherosclerosis, disease of arterial sclerosis, disease of cardiovascular systems, cerebrovascular disease, peripheral circulatory disease, metabolic syndrome, syndrome X, obesity, diabetes (type I or II), hyperglycemia, insulin resistance, impaired glucose tolerance, hyperinsulinism, diabetic complication, cardiac insufficiency, cardiac infarction, cardiomyopathy, hypertension, non-alcoholic fatty liver disease (NAFLD), nonalcoholic steatohepatitis (NASH), thrombus, Alzheimer disease, neurodegenerative disease, demyelinating disease, multiple sclerosis, adrenal leukodystrophy, dermatitis, psoriasis, acne, skin aging, trichosis, inflammation, arthritis, asthma,
hypersensitive intestine syndrome, ulcerative colitis, Crohn's disease, and pancreatitis.
In still other embodiments, the ΡΡΑΡνδ-related disease is cancer. Examples of cancer include, but are not limited to, cancers of the colon, large intestine, skin, breast, prostate, ovary, and/or lung.
Pharmaceutical Compositions and Administration Thereof
Additional Therapeutic Agents
Pharmaceutical compositions are disclosed that include one or more compounds provided herein (such as 1, 2, 3, 4 or 5 of such compounds), and typically at least one additional substance, such as an excipient, a known therapeutic other than those of the present disclosure, and combinations thereof. In some embodiments, the disclosed PPAR agonists can be used in combination with other agents known to have beneficial activity with the disclosed PPAR agonists. For example, disclosed compounds can be administered alone or in combination with: one or more other PPAR agonists, such as a thiazolidinedione, including rosiglitazone, pioglitazone, troglitazone, and combinations thereof, or a
sulfonylurea agent or a pharmaceutically acceptable salt thereof, such as tolbutamide, tolazamide, glipizide, carbutamide, glisoxepide, glisentide, glibornuride, glibenclamide, gliquidone glimepiride, gliclazide and the pharmaceutically acceptable salts of these compounds, or muraglitazar, farglitazar, naveglitazar, netoglitazone, rivoglitazone, K-l l l, GW-677954, (-)-Halofenate, acid, arachidonic acid, clofbrate, gemfibrozil, fenofibrate, ciprofibrate, bezafibrate, lovastatin, pravastatin, simvastatin, mevastatin, fluvastatin, indomethacin, fenoprofen, ibuprofen, and the pharmaceutically acceptable salts of these compounds.
In one embodiment, disclosed compounds may be administered in combination with dexamphetamine, amphetamine, mazindole or phentermine; and administered in combination with medicaments having an anti-inflammatory effect.
Further, when used for the treatment of a metabolic condition, the pharmaceutical compositions provided herein can be administered as a combination therapy with one or more pharmacologically active substances having favorable effects on metabolic disturbances or disorders. For example, the disclosed pharmaceutical compositions may be administered in combination with RXR agonists for treating metabolic and cardiovascular diseases medicaments, which lower blood glucose; antidiabetics, such as insulins and insulin derivatives, including Lantus, Apidra, and other fast-acting insulins, and GLP-1 receptor modulators; active ingredients for treating dyslipidemias; anti-atherosclerotic medicaments; anti-obesity agents; anti-inflammatory active ingredients; active ingredients for treating malignant tumors; anti-thrombotic active ingredients; active ingredients for treating high blood pressure; active ingredients for treating heart failure, and combinations thereof.
Working Examples
Skeletal muscle relies on the resident progenitor cells, the satellite cells, for postnatal growth and regeneration. Therefore, maintaining an adequate number and proper function of satellite cells is critical for muscle to appropriately response to damage. While endurance exercise promotes adaptive responses in the muscle, including an increase in the satellite cell number, it is not known whether transcriptionally directed "endurance exercise training" has similar effects. Here it is shown that mice harboring constitutively active PPAR5 in skeletal muscle displayed an accelerated regenerative process in muscle after an acute injury. Gene expression analyses showed earlier resolution of the inflammatory response and induction of myogenic markers, indicating that PPAR5 activation induces a temporal shift in the regenerative process. Notably, a significant increase in the number of satellite cells was found in mice with constitutively active PPAR5 expressed in skeletal muscle, consistent with the observed increase in proliferating cell number after the injury. PPAR5 activation induced the expression of FGF1, which is known to be involved in muscle development and regeneration. In particular, PPAR5 up-regulates FGFla isoform, which may be responsible for supporting cell proliferation and reestablishment of vasculature to augment the
regenerative process. Furthermore, the restoration of fiber integrity was improved in wild- type mice after acute treatment with the PPAR5 synthetic ligand, GW501516. Collectively, these findings allude to the therapeutic potential of PPAR5, to accelerate the recovery from acute muscle injury.
Activation of peroxisome proliferator activated receptor δ (PPAR5) induces a fiber type switch toward a more oxidative phenotype, altering both metabolic and functional output of the muscle (Wang et al., PLoS Biol 2(10):e294. Erratum in: PLoS Biol. 2005 Jan;3(l):e61 (2004); Luquet et al, FASEB J 17(15):2299-2301 (2003)). Specifically, PPAR5-mediated muscle remodeling translates into supernatural physical endurance, and protection against diet-induced obesity and symptoms of metabolic disorders that ensue (Wang et al. , PLoS Biol 2(10):e294. Erratum in: PLoS Biol. 2005 Jan;3(l):e61 (2004); Wang et al., Cell 113: 159-170 (2003)). Furthermore, pharmacological activation of PPAR5 and exercise training synergistically enhance oxidative fibers and running endurance (Narkar VA et al. , Cell 134(3):405-415 (2008)). Exercise confers a myriad of healthful benefits to the body, including improvement of atrophic and disease conditions (Nicastro et al., Braz J Med Biol Res 44(l l): 1070-9 (2011); Markert et al, Muscle Nerve 43(4):464-78 (2011)). Recently, endurance exercise alone has been shown to improve ageing induced decrease in satellite cell number and their myogenic capacity (Shefer et al, PLoS One 5(10):el3307 (2010)).
It is demonstrated herein that both genetic and pharmacological activation of PPAR5 promote muscle regeneration in an acute thermal injury mouse model. PPAR5 activation during regeneration expedites resolution of inflammatory response and restoration of contractile proteins. Interestingly, acute pharmacological activation of PPAR5 by oral administration of a synthetic ligand, GW501516, is sufficient to confer similar benefits during muscle regeneration after an acute injury. Based on these observations, a novel role of PPAR5 during adult muscle regeneration and its use as a therapeutic target to enhance regenerative efficiency of skeletal muscle is provided. EXEMPLIFICATION
Example1
Experimental Procedures
A. Animals
VP16-PPAR5 mice (Wang et al, Cell 113: 159-170 (2003)) were bred to CB6F1 strain (Jackson Laboratories) and used as heterozygotes in experiments. The non-transgenic littermates served as controls. All experiments were performed when animals were 8 weeks of age. Nestin-GFP mice (Mignone et al, J Comp Neurol 469(3):311-324 (2004)) were kindly provided by Dr. Fred Gage at the Salk Institute for Biological Studies. B. Freeze burn injury
TA muscles were injured according to previously published methods with a few modifications (Brack et al., Science 317(5839):807-810 (2007)). A stainless steel lg weight (Mettler- Toledo) equilibrated to the temperature of dry ice was placed directly on the exposed TA for 10 seconds. Following the thermal injury, incision was closed using
VetBond (3M). All injury procedures were performed on the left leg, and the right leg was used as control.
C. Histology
Animals were perfused with 15 mL of ice-cold PBS followed immediately by 20 mL of 10% saline buffered formalin. TA muscles were excised and immersed in 4%
paraformaldehyde for at least 48 hours at 4 °C. Tissues were dehydrated in series of solutions with increasing percentage of ethanol. Dehydrated tissues were cleared in xylene and allowed for paraffin to permeate over night at 60 °C. Tissues were then embedded in plastic molds.
Paraffin embedded tissue blocks were sectioned at 7 μιη thick on Leica Jung 2500
Microtome. Sections were stained with hematoxylin and counter stained with 1% eosin. Slides were dried and mounted with Entellan mounting media (EMS). Three random non- overlapping fields were photographed for analysis. Regenerating fiber number was measured by counting the number of discernible muscle fibers with centralized myonuclei (Ge et ah, Am J Physiol Cell Physiol 297 (6):C1434- 1444 (2009)). Regenerating fiber cross sectional area (CSA) was measured using Image J software.
D. Evans Blue dye staining
Injured animals were injected with Evans Blue dye according published protocol (Hamer et al, J Anat 200(Pt l):69-79 (2002)). Sterile 1% w/v Evans Blue dye in PBS was intraperitoneally injected at 1% volume relative to the body mass of an animal. Seven hours after the injection, injured TA muscles were harvested and snap-frozen by isopentane quenching in liquid nitrogen. Frozen sections were cut in ΙΟμιη thickness, fixed in ice-cold acetone, dipped in xylene and mounted with DPX. Proportion of the stained area over the total area was measured using ImageJ software.
E. BrdU Labeling
50 mg/kg body weight of BrdU (Sigma) was injected intraperitoneally as solution of 10 mg/mL BrdU in saline. TA muscles were harvested at 7 days after injury and processed for paraffin sections as described above. BrdU incorporation was visualized using the BrdU Labeling and Detection Kit I (Roche) and BrdU+ nuclei were counted and represented as a proportion of total nuclei in a field.
F. RT-QPCR
Whole or partial tissues were homogenized by Polytron probe homogenizer in Trizol reagent (Invitrogen). Total RNA was extracted from the homogenates according to the manufacturer's protocol. 1 μg of DNase-treated total RNA was reverse transcribed using Superscript II Reverse Transcriptase (Invitrogen) according to the manufacturer' s instructions. cDNAs were diluted 1/40 with ddH20 and used as templates in RT-QPCR reactions with SYBRGreenER qPCR SuperMix detection system (Invitrogen). Samples were prepared in technical triplicates and relative mRNA levels were calculated by using the standard curve methodology and normalized against GAPDH mRNA levels in the same samples. G. Myofiber Isolation
Either whole or partial gastrocnemius muscle was digested in 2% collagenase I (Sigma) in DMEM with 10% FBS for 60 minutes at 37 °C. Muscle tissue was further mechanically digested by triturating with fire polished wide bore Pasteur pipet. Liberated fibers were washed in two changes of PBS with 10%FBS and finally mounted on glass slides with Vectashield mounting media (Vector Labs).
H. Isolation of satellite cells
Satellite cells were harvested from TA of 8 weeks old animals according to published protocols with some modifications (Day et al. (2007) Nestin-GFP reporter expression defines the quiescent state of skeletal muscle satellite cells. Dev Biol 304(l):246-259). Muscles were removed and washed briefly in DMEM on ice. They were then minced to fine slurry with razor blade on 60mm culture dish over ice. Minced muscles were transferred to one well of a 6-well plate containing 5 ml of 450KPU/ml pronase in DMEM. The tissues were digested at 37°C/5% CC"2 for 60 minutes. After digestion, tissues were vigorously triturated 20 times through 10ml serological pipet. Digested tissues were filtered through 40 micron cell strainer and washed with equal volume of DMEM with 20% horse serum. Cells were spun down at lOOOg for 10 minutes and resuspended in sorting buffer (DMEM with 10% FBS). Cells were separated from larger debris by 20%/60% Percoll gradient (Yablonka-Reuveni Z et al. (1987) Isolation and clonal analysis of satellite cells from chicken pectoralis muscle. Dev Bio 119: 252-259). GFP positive cells were sorted on BD FACSAria II sorter.
Example2
Muscle specific activation of PPAR5 confers regenerative advantage While it has been shown that the majority of the metabolic genes are down regulated in this model, PPAR5 expression was induced over 2 fold at 2 days after the injury (Warren et al. (2007) Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models. J Physiol. 582.2: 825-841, FIG. 1A). This injury dependent up- regulation of PPAR5 strongly suggested a possible role for PPAR5 during the early part of the regenerative process.
Freeze burn injury was used to elicit the regenerative program, which has been shown to model the standard course of regenerative response, including satellite cell activation (Karpati and Molnar. "Muscle fibre regeneration in human skeletal muscle diseases." In: Schiaffino S, Partridge T (eds). Skeletal muscle repair and regeneration. Springer, Dordrecht, 2008). Additionally, since the injury is directly applied to the surface of the muscle, it is highly localized and reproducible.
Using Evans Blue dye uptake as a marker of myofiber damage, fiber integrity was histologically assessed. The freeze burn injury does not incapacitate the animals and the damaged fibers restore original cross sectional area by 21 days after the injury (FIG. IB). By comparing the proportion of stained fibers within the cross sectional area (CSA) of the injured muscle 5 days after the injury, the degree of existing damage was quantified. At 5 days after the injury, VP16-PPAR5 (TG) animals show significantly less dye uptake, thus increased fiber intactness, over the wildtype (WT) animals (FIG. 1C). While 14% of the total CSA shows dye uptake, only 5% of the total CSA of TG muscle show dye uptake (n=8 WT; n=5 TG; p=0.001) (FIG. ID). At 12 and 36 hours after the injury, however, both WT and TG animals showed similar proportions of stained area (50.6% and 47.4% (p=0.67), and 38.5% and 43.3% (p=0.23), respectively) (FIGS. IE and IF). Similar level of dye uptake shortly after the injury shows that both WT and TG animals initially sustain similar degree of damage from the injury and suggests that PPAR5 activation does not confer protection from damage. Instead, the reduction in Evans Blue dye uptake observed 5 days after the injury suggests that the muscle specific PPAR5 activation promotes restoration of fiber integrity after the injury.
The morphological hallmarks of regenerating fibers was determined for a detailed analysis of the process. H&E stained transverse sections through the injured area were examined at 3, 5 and 7 days post injury. At 3 days after the injury, both WT and TG animals showed similar degrees of degeneration defined as necrosing fibers surrounded by infiltrating monocytes (FIG. 1G). No regenerating fibers, characterized by small, round shape and centralized nuclei, were discernible at this time point in WT animals, but a notable few were seen in TG animals (arrows, FIG. 1G). By day 5 after the injury, obvious differences begin to emerge. In WT animals, small regenerating fibers were visible but necrosing fibers and monocytes were still prevalent at the site of the injury (arrowheads, FIG. 1G). While in the TG animals, the injury site harbors orderly arrangement of small regenerating fibers.
Quantification of regenerating fiber number and CSA reveals that by 5 days post injury, TG animals show significant regenerative advantage over their WT counterparts. Both CSA of the regenerating fibers and the number of regenerating fibers were significantly greater for TG animals at 43.5% (n=5 or 6; p<0.03) and 33.0% (n=l l or 12; p<0.001), respectively (FIGS. IB and 1C). By day 7 post injury, the damage site appears architecturally similar between WT and TG animals, where both show a field of immature regenerating fibers without the infiltrating immune cells . However, quantification of the regenerating fibers revealed a regenerative advantage of the TG animals in the number of nascent regenerating fibers (FIG. 1H). At 21 days after the injury, both WT and TG animals have restored their fiber size and number to that of the uninjured level (FIG. 1J). These data demonstrate that the muscle specific activation of PPAR5 sufficiently bestows regenerative advantage, most prominently observed in the early stages of the regenerative process.
Example 3
ΡΡΑΙίδ activation leads to temporal shift, thus increased efficiency, of the regenerative process
Skeletal muscle regeneration is an intricately orchestrated process involving a variety of cell types. For example, immune cells, both neutrophils and macrophages, are necessary for the proper progression of regenerative process (Zacks et al., Muscle Nerve 5: 152-161 (1982); Grounds et al, Cell Tissue Res 250:563-569 (1987); Teixeira et al, Muscle Nerve 28(4):449-459 (2003); Summan et al., Am J Physiol Regul Integr Comp Physiol 290:R1488- R1495 (2006); Contreras-Shannon et al., Am J Physiol Cell Physiol 292:C953-967 (2007); Segawa et al., Exp Cell Res 314(17):3232-3244 (2008)). Additionally, various cytokines are necessary to promote chemotaxis of monocytes and also to directly regulate the activities of myogenic cells (Warren et al., Am J Physiol Cell Physiol 286(5):C1031-1036 (2004);
Yahiaoui et al., J Physiol 586:3991-4004 (2008); Chazaud et al, JCB 163(5): 1133- 1143 (2003)). Therefore, the temporal expression profiles of genes associated with various aspects of the regenerative process was determined.
Global, injury specific gene expression changes, were identified in VP16-PPAR5 animals by microarray. Comparing the gene expression profiles of injured TG to WT 3 days post- injury, 3257 genes that changed expression pattern, of those, 1375 of them were down regulated and 1882 were up regulated. Interestingly, genes involved in myogenesis and remodeling were robustly up-regulated by PPAR5 activation while those involved in inflammatory response were down regulated in injured TG muscles (FIG. 2A). Additionally, genes involved in developmental processes, angiogenesis and anti-apoptotic processes emerged from the analysis (FIG. 2A). Relative expressions of regeneration markers reveal down-regulation of early makers (inflammatory genes) and up-regulation of
regenerative/remodeling genes (myogenic, vascularization, ECM genes) in TG animals 3 days post injury (FIG. 2B). Collectively, PPAR5 activation appears to control a network of genes involved directly in myogenesis and also in remodeling and repair processes after the injury.
Underlying phasic progression of the regenerative program is a temporally
coordinated gene expression of a variety of contributing processes. In order to validate and temporally expand the microarray data, expression of CD68 (inflammation) and MyoD (myogenesis) were measured by Q-PCR at several time points over 7 days after injury (FIGS. 2C and 2D). A temporal shift in the expression patterns of regenerative markers for TG animals compared to their WT littermates was observed. TG animals showed rapid induction of CD68 whose expressions peaked sooner and were subsequently down regulated earlier than in the WT animals. Interestingly, inflammatory markers studied here peaked at similar levels between the two genotypes, which indicates that TG animals do not completely suppress their inflammatory responses. Instead, it appears that the TG animals respond and resolve their inflammatory responses more efficiently, which is consistent with the accelerated restoration of muscle morphology observed. TG animals also show higher expression of perinatal myosin heavy chain gene, Myh8, at 7 days post injury, indicating more efficient reassembly of the contractile properties (FIG. 2E). PPAR5 activation leads to a temporal shift in the expression patterns of regenerative markers, which together with the histology data, shows a role of PPAR5 in increasing regenerative efficiency.
Example4 PPAR5 directs neo-vascularization via regulation of FGFl
This example describes adaptive responses bestowed by PPAR5 activation in the muscle which may contribute to the observed beneficial effects on regeneration.
Increased vasculature is one of the hallmarks of oxidative myofibers, which facilitates introduction of immune cells and also supports increased number of satellite cells. TG animals show increased expression of FGFl in TA muscle (FIG. 3D). Upon injury, TG animals maintain high expression of FGFl expression (FIG. 3D). Immuno staining transverse sections of uninjured TA from WT and TG animals revealed 36% increase in the number of CD31+ capillaries per field by PPAR5 activation (FIGS. 3A-C). Furthermore, after the injury, TG animals show increased expression of CD31, which is indicative of increased vascularity (FIG. 3E-F). The induction of FGFla upon activation of PPAR delta with the GW1516 ligand was confirmed using a luciferase reporter assay (FIG. 3G). FGF1 has been shown to be expressed in regenerating fibers in chronic disease models and has been implicated in myogenesis and regeneration (Oliver, Growth Factors. 1992;7(2):97-106, 1992; Saito, 2000, Muscle Nerve. 23(4):490-7) and to increase microvasculature in adipocytes and PPAR5 directly regulates expression of FGFla isoform (Jonker, et al., Nature.
485(7398):391-4, 2012). Therefore, increased vascularity may contribute to the accelerated regenerative process observed in VP16-PPAR5 animals.
Example 5
PPAR5 activation positively regulates quiescent satellite cell number
One of the first events following the injury is the proliferation of muscle resident progenitors, the satellite cells. This example describes results showing that the regenerative advantage observed in TG animals could be due to altered satellite cell homeostasis.
Nestin expression was used as a marker of satellite cells, and nestin-GFP;VP16- PPAR5 double transgenic animals were used to genetically label quiescent satellite cells(SCs) in vivo (Mignone et al, J Comp Neurol 469(3):311-324 (2004); Day et al, Dev Biol
304(1 ):246-259 (2007)). Gastrocnemius muscles were enzymatically digested to liberate individual fibers, then mounted for quantification (FIG. 4A). While double transgenic animals averaged 1.01 SCs per mm of fiber length, GFP+ animals only had 0.15 SCs per mm, a 6.48 fold higher SC content on VP16- PPAR5 muscle fiber (FIG.4B).
Satellite cell activity was measured as myoblast proliferation elicited by the freeze burn injury in vivo. After the freeze burn injury, BrdU was intraperitoneally injected at 12 hrs, 24 hrs and 2 days after the injury and the muscles were harvested 7 days after the injury to calculate the ratio of BrdU+ to total nuclei. TG animals showed 40-60% increase in the number of BrdU+ proliferating cells at all three injection times (FIG. 4C). Therefore, PPAR5 induced increase in the number of quiescent satellite cells yields higher number of fusion competent myoblasts, leading to the enhancement of regenerative capacity of the muscle. Example6
Acute pharmacological activation of PPAR5 confers regenerative advantage
Pharmacological activation of PPAR5 has been shown to induce PPAR5 target genes in fast-twitch hind limb muscles (Narkar et al, Cell 134(3):405-415 (2008)). To demonstrate that an acute pharmacological activation of PPAR5 can modulate regenerative process after injury, C57BL6J mice were treated with GW501516 (Sundai Chemicals, China) orally at 5 mg/kg for 4 days prior to and 5 days after the thermal injury to the TA.
Up-regulation of known PPAR5 target genes (PDK4, CPTlb, and catalase) was confirmed by QPCR, attesting to the successful delivery and activity of the PPAR5 ligand in the muscle (FIG. 5A). While vehicle treated animals showed dye uptake in 7.6% of the cross sectional area (CSA), merely 4.9% of the muscle CSA was stained in the ligand treated animals (FIGS. 5B and 5C). Therefore, the drug treated animals showed 34.7% reduction in the proportion of stained area 5 days after the injury, demonstrating that pharmacological activation of PPAR5 enables accelerated restoration of myofiber integrity after the injury.
Moreover, BrdU injection at 48 hours after the injury revealed that PPAR5 activation promotes myoblast proliferation after the injury (FIG. 5D). However, an increase in the number of quiescent satellite cells was not observed after 9 days or 4 weeks of ligand treatment. Since satellite cells do not undergo rapid turnover, length of ligand treatment may have been too short. Nonetheless, GW501516 treatment promoted myoblast proliferation in vivo after the injury, which may contribute to the accelerated regeneration after the injury.
The expression of inflammatory marker genes at 3 days after the injury was measured by QPCR. While the initial inflammatory responses are similarly generated with or without the PPAR5 ligand treatment at 12 hours after the injury, by 3 days after the injury, the expressions of inflammatory marker genes were significantly reduced by the PPAR5 agonist treatment (FIG. 5E). This result is consistent with the known role of PPAR5 as an antiinflammatory, and also corroborates the data discussed earlier with the genetic over- expression of activated PPAR5 during muscle regeneration.
In summary, PPAR5 activation expedites skeletal muscle regeneration following an acute thermal injury. VP 16- PPAR5 transgenic animals showed increased satellite cell proliferation at the early phase of the regenerative process, which subsequently translated into increased CSA and the number of nascent regenerating fibers. Most interestingly, muscle specific over expression of PPAR5 seems to increase the resident satellite cell pool. Increased satellite cell population on a muscle fiber seems to contribute to the accelerated resolution of the injury. These findings unveil a novel role for PPAR5 in the maintenance of skeletal muscle; as a potential therapeutic target for accelerated restoration of muscle mass after an acute injury and other atrophic conditions.
Notably, PPAR5 activation seems to promote rapid emergence of nascent fibers after the injury. There being no evidence of hyperplasia at 21 days after the injury when the regenerative process is essentially complete, it is concluded that the additional nascent fibers efficiently fuse with each other to restore mature fibers (Karpati G, Molnar MJ in Skeletal muscle repair and regeneration, eds Schiaffino S, Partridge T (Springer, Dordrecht), (2008)). While IGF-1 and myo statin seem to rely on fiber hypertrophy to augment regenerative progress, PPAR5 seems to employ a unique way to promote regeneration (Menetrey et al., J Bone Joiny Surg Br 82(l): 131-7 (2000); Wagner et αί, Αηη Neurol 52(6): 832-6 (2002); Bogdanovich et al., Nature 420(6914):418-21 (2002)). Underlying this difference may be the increased number of quiescent satellite cells. Higher number of progenitor cells leads to the increase in post injury proliferating cells and consequent increase in the number of nascent fibers. While various growth factors and chemokines, including IGF-1 and myostatin, have been shown to enhance proliferation of satellite cells and promote regeneration, it is unclear whether any of them positively regulate the number of quiescent satellite cells (Husmann I et al., Cytokine Growth Factor Rev 7(3):249-258 (1996); McCroskery S et al., J Cell Biol 162(6): 1135-1147 (2003); Musaro A et al., Nat Genet 27: 195-200 (2001); Amthor H et al. , PNAS 106(18):7479-84 (2009)). The findings shown herein indicate a novel role of PPAR5 as a positive regulator of satellite cell pool. Interestingly, since rapid cell proliferation was not observed under normal conditions, PPAR5 mediated satellite cell expansion is transient and tightly regulated, most likely elicited by external stimuli, such as signals for postnatal growth and injury. In an adult muscle, satellite cell number is finite, diminishing
detrimentally in disease state and aging. It is of great therapeutic benefit if PPAR5 activation can bestow infinite abundance of satellite cell population throughout the life of an organism.
While enhancement in regenerative capacity was observed in both genetic and pharmacological models, the inherent differences in the experimental parameters is acknowledged. Orally administered GW501516 was delivered systemically, presumably activating PPAR5 in a variety of organs and cell types in the animal. However, in VP16- PPAR5 animals, activation of the PPAR5 receptors is limited to the mature muscle fibers. Additionally, genetic background of the animals may affect the efficiency of regeneration after an injury (Grounds and McGeachie, Cell Tissue Res 255(2):385-391 (1989); Roberts et al., J Anat 191:585-594 (1997)). Extramuscular effects of PPAR5 agonist administration may require further investigation when considering clinical use of GW501516 to augment muscle injury treatment. Recently, pharmacological activation of PPAR5 has been shown to improve sarcolemmal integrity in mdx mice (Miura et al., Hum mol Genet 18(23):4640-4649 (2009)).
The results herein expand previous understandings of the role of PPAR5 in muscle physiology. It is shown herein that PPAR5 not only controls running endurance and metabolic parameters in the muscle, but also its regenerative program. PPAR5 activation affects multiple facets of the regenerative program, exerting comprehensive but transient effects to expedite the progress. In view of these findings, PPAR5 may be pharmacologically targeted to enhance the regenerative capacity of the muscle after injury and possibly other degenerative conditions where satellite cell function is compromised. For example, PPAR5 activation can be used to treat other degenerative conditions such as aging induced satellite cell dysfunction and ensuing sarcopenia.
Example7a
PPAR6 activity screen
Cell Culture and Transfection: CV-1 cells were grown in DMEM+10 charcoal stripped FCS. Cells were seeded into 384- well plates the day before transfection to give a confluency of 50-80% at transfection. A total of 0.8 g DNA containing 0.64 micrograms pCMX-PPARDelta LBD, 0.1 micrograms pCMX.beta.Gal, 0.08 micrograms pGLMH2004 reporter and 0.02 micrograms pCMX empty vector was transfected per well using FuGene transfection reagent according to the manufacturer's instructions (Roche). Cells were allowed to express protein for 48 h followed by addition of compound.
Plasmids: Human PPAR5 was used to PCR amplify the PPAR5 LBD. The amplified cDNA ligand binding domain (LBD) of PPAR5 isoform was (PPAR5 amino acid 128 to C- terminus) and fused to the DNA binding domain (DBD) of the yeast transcription factor GAL4 by subcloning fragments in frame into the vector pCMX GAL (Sadowski et al. (1992), Gene 118, 137) generating the plasmids pCMX-PPARDelta LBD. Ensuing fusions were verified by sequencing. The pCMXMH2004 lucif erase reporter contains multiple copies of the GAL4 DNA response element under a minimal eukaryotic promoter (Hollenberg and Evans, 1988). pCMXpGal was generated.
Compounds: All compounds were dissolved in DMSO and diluted 1: 1000 upon addition to the cells. Compounds were tested in quadruple in concentrations ranging from 0.001 to 100 μΜ. Cells were treated with compound for 24 h followed by luciferase assay. Each compound was tested in at least two separate experiments.
Luciferase assay: Medium including test compound was aspirated and washed with PBS. 50 μΐ PBS including 1 mM Mg++ and Ca++ were then added to each well. The luciferase assay was performed using the LucLite kit according to the manufacturer's instructions (Packard Instruments). Light emission was quantified by counting on a Perkin Elmer Envision reader. To measure 3-galactosidase activity 25 μΐ supernatant from each transfection lysate was transferred to a new 384 microplate. Beta-galactosidase assays were performed in the microwell plates using a kit from Promega and read in a Perkin Elmer Envision reader. The beta-galactosidase data were used to normalize (transfection efficiency, cell growth etc.) the luciferase data.
Statistical Methods: The activity of a compound is calculated as fold induction compared to an untreated sample. For each compound the efficacy (maximal activity) is given as a relative activity compared to GW501516, a PPAR5 agonist. The EC50 is the concentration giving 50% of maximal observed activity. EC50 values were calculated via non-linear regression usingGraphPad PRISM (GraphPad Software, San Diego, Calif.).
The following examples provide physical and in vitro data for various different exemplary compounds.
Nuclear Hormone Receptor (NHR) Assays
Cell Handling: PathHunter NHR cell lines were expanded from freezer stocks according to standard procedures. Cells were seeded in a total volume of 20 \L into white walled, 384-well microplates and incubated at 37 °C for the appropriate time prior to testing. Assay media contained charcoal-dextran filtered serum to reduce the level of hormones present.
Agonist Format: For agonist determination, cells were incubated with sample to induce response. Intermediate dilution of sample stocks was performed to generate 5X sample in assay buffer. 5 μL of 5X sample was added to cells and incubated at 37 °C or room temperature for 3-16 hours. Final assay vehicle concentration was 1%.
Antagonist Format: For antagonist determination, cells were pre-incubated with antagonist followed by agonist challenge at the EC80 concentration. Intermediate dilution of sample stocks was performed to generate 5X sample in assay buffer. 5 \L of 5X sample was added to cells and incubated at 37 °C or room temperature for 60 minutes. Vehicle concentration was 1%. 5 μL· of 6X EC80 agonist in assay buffer was added to the cells and incubated at 37 °C or room temperature for 3- 16 hours.
Signal Detection: Assay signal was generated through a single addition of 12.5 or 15 \L (50% v/v) of PathHunter Detection reagent cocktail, followed by a one hour incubation at room temperature. Microplates were read following signal generation with a PerkinElmer EnvisionTM instrument for chemiluminescent signal detection.
Data Analysis: Compound activity was analyzed using CBIS data analysis suite
(Chemlnnovation, CA). For agonist mode assays, percentage activity was calculated using the following formula:
% Activity =100% x (mean RLU of test sample— mean RLU of vehicle control) / (mean MAX control ligand— mean RLU of vehicle control).
For antagonist mode assays, percentage inhibition was calculated using the following formula:
% Inhibition =100% x (1— (mean RLU of test sample— mean RLU of vehicle control) / (mean RLU of EC80 control— mean RLU of vehicle control)).
Note that for select assays, the ligand response produces a decrease in receptor activity (inverse agonist with a constitutively active target). For those assays inverse agonist activity was calculated using the following formula:
% Inverse Agonist Activity =100% x ((mean RLU of vehicle control— mean RLU of test sample) / (mean RLU of vehicle control— mean RLU of MAX control)).
Table 1. NHR Interaction Assay and PPARdelta Activity Screen
Figure imgf000039_0001
NHR Protein
Interaction Biosenor PPAR delta transactivation
Compound Mol.Wt
assay, PPARdelta EC50 (nM)
EC50 (nM)
Compound 8m 420.51 13.49 1316.00
Compound 8n 447.40 22.6 19.80
Compound 80 435.51 228.90 1639.00
Compound 8p 469.54 1757.20
Compound 8q 455.51 116.02
Compound 8r 471.51 627.57
Compound 8s 449.55 510.92
Compound 8t 433.50 52.10 308.00
Compound 8u 433.50 265.9 320.00
Compound 8v 433.50 209.9 2510.00
Compound 8w 433.50 706.8 643.80
Compound 8x 433.50 264.9 82.50
Compound 8y 439.53 232.90
Compound 8z 437.54 5544.50
Compound 8aa 501.50 683.00
Compound 8bb 473.57 58% inhibition @ !OuM
Compound 8cc 419.48 80.43
Example 7b
Pharmacokinetic Screening
In this example, the PK profile of several PPAR5 agonists disclosed herein in male CD-I mice or Wistar rats was determined. Similar methods can be used to analyze other compounds provided herein.
All compounds were separately administered to CD-I mice at 3 mg/kg iv or 10 mg/kg po. GW501516 was administered to Wistar rats at 3 mg/kg (i.v.) or 10 mg/kg (p.o.).
Table 2. Pharmacokinetic Data
Figure imgf000040_0001
NHR Protein
Interaction Biosenor Mice_PK_IV_Cl Mice_PK_IV_AUC (0-
Compound
assay, PPARdelta [ml/min/kg] inf) [ng*hr/ml]
EC50 (nM)
Compound 8d 1.59 34.65 1443.00
Compound 8e 11.86 23.10 2166.00
Compound 8f 45.06 40.02
Compound 8g 5.51 23.00 2195.00
Compound 8h 40.20 4.20 11843.00
Compound 8i 693.50 10.65 4691.00
Compound 8k 1849.20 3.92 12804.00
Compound 8C 1265.10 9.68 5161.00
Compound 8m 13.49 115.00 434.70
Compound 8n 22.6 5.10
Compound 8o 228.90 2.78 11397.00
Compound Hp 1757.20 173.05 288.90
Compound 8q 116.02 80.32 622.50
Compound 8s 510.92 1.03 48454.90
Compound 8t 52.10 3.08
Compound 8u 265.9 1.70 30142.00
Compound 8w 706.8 1.70
Compound 8x 264.9 1.90
Provided below is a comparison of activity and pharmacokinetic data of some
compounds of the invention against several comparator compounds
5 Table 3. Activity/Pharmacokinetic Comparison
Comparator Compound Compound NHR Protein Mice_PK_IV_Cl
Interaction [ml/min/kg]
Biosenor
assay,
PPARdelta
EC50 (nM)
Figure imgf000041_0001
Compound 8a Comparator Compound Compound NHR Protein Mice_PK_IV_Cl
Interaction [ml/min/kg]
Biosenor
assay,
PPARdelta
EC50 (nM)
Figure imgf000042_0001
PPAR-delta EC50 = 4.81 nM
22.6 5.10
Figure imgf000042_0002
PPAR-delta EC50 = 511.80 nM
Figure imgf000042_0003
Compound 8m
Comparator Cmpd. 3
Figure imgf000042_0004
PPAR-delta EC50 = 60.16 nM Compound 8f
Mice_PK_IV_Cl = 27.95
mL/min/kg
[AUC (0-inf) = 1788.0 ng*hr/ml] Comparator Compound Compound NHR Protein Mice_PK_IV_Cl
Interaction [ml/min/kg]
Biosenor
assay,
PPARdelta
EC50 (nM)
1.93 34.30
Figure imgf000043_0001
Compound 8c
Figure imgf000043_0002
Compound 8e
PPAR-delta EC50 = 64.25nM
Mice_PK_IV_Cl = 601.42
mL/min/kg
Comparator Cmpd. 6 5.51 23.00
Figure imgf000043_0003
PPAR-delta EC50 = 2.54 nM
Mice_PK_IV_Cl = 27.0 mL/min/kg
[AUC (0-inf) = 1842.0 ng*hr/ml]
A line graph comparing the the mouse IV exposure of some of the compounds of the invention in comparsion versus comparator compounds is shown in Figure 8. Example 8
Synthetic Preparation of Compound Embodiments
Abbreviations
Me methyl
Et ethyl
nPr w-propyl
iPr isopropyl
cPr cyclopropyl
nBu w-butyl
iBu isobutyl
Boc tert-butyloxycarbonyl
Ac acetyl
Ph phenyl
Tf trifluoromethanesulfonyl
Ts 4-methylphenylsulfonyl
EDCI 3-(3-dimethylaminopropyl)- 1 -ethylcarbodiimide
HOBt 1-hydroxybenzotriazole
HATU l-[bis(dimethylamino)methylene]-lH-l,2,3-triazolo[4,5-b]pyridinium 3- oxide hexafluorophosphate
HBTU N,N,N,N',N'-Tetramethyl-0-(lH-benzotriazol-l-yl)uronium
hexafluoropho sphate
DIPEA diisopropylethylamine
Togni' s reagent 3,3-dimethyl- l-(trifluoromethyl)- 1 ,2-benziodoxole
DCM dichloromethane
DME dimethoxyethane
DMF N,N-dimethylformamide
DMF.DMA N,N-dimethylformamide dimethyl acetal
DMSO dimethylsulfoxide
TFA trifluoroacetic acid
THF tetrahydrofuran
MW microwave irradiation
aq Aqueous
M concencetration expressed in mol/L RT room temperature
TLC thin lay chromatography
HPLC high-performance liquid chromatography
MPLC medium pressure liquid chromatography
LCMS liquid chromatography-mass spectrometry
ESI+ m/z values in mass spectroscopy (Ionization ESI)
ESI- m/z values in mass spectroscopy (Ionization ESI)
1H NMR (DMSO-J6) δ (ppm) of peak in 1H NMR in DMSO-J6
s singlet (spectrum)
d doublet (spectrum)
t triplet (spectrum)
q quartet (spectrum)
dd double doublet (spectrum)
br broad line (spectrum)
m multiplet (spectrum).
General Scheme-I
Figure imgf000045_0001
Reagents and Conditions: a) mCPBA, Et20, -30°C to 0°C, 12 h, 57%; b) NaI04, 1,4- dioxane, H20, RT, 24 h, 100%; c) Jones reagent, acetone, RT, 78%; d) H2S04, MeOH, RT, 97%; e) CBr4, PPh3, THF, RT, 4 h, 72%.
General Scheme-II
Figure imgf000045_0002
R= H, F
R1 = Me, iPr Reagents and Conditions: a) MeNH2.HCl, Et3N, NaBH4, MeOH, RT.
General Scheme-Ill
Figure imgf000046_0001
R2= H, F, CI
R3= H, Me
Reagents and Conditions: a) Pd(PPh3)4, K2C03, DMF, H20, 90°C.
General Scheme-IV
Figure imgf000046_0002
R= H, F
R1 - Me, iPr
R2= H, F, CI
R3=H, Me
Reagents and Conditions: a) EDCI.HCl, HOBt, Et3N, DMF, RT; b) Methyl (E)-6-bromo-4 methylhex-4-enoate, K2C03, DMF, RT; c) LiOH.H20, THF, EtOH, H20, RT. Example 8A: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoic acid {Compound 8a):
Figure imgf000047_0001
Step 1: Synthesis of (E)-5-(3,3-dimethyloxiran-2-yl)-3-methylpent-2-en-l-yl acetate
( Compound 8a-i):
Figure imgf000047_0002
In a 250 mL round bottom flask, a solution of geranyl acetate (2.0 g, 10.20 mmol) in diethyl ether (20 mL) was treated with a solution of mCPBA (5.01 g, 30.60 mmol) in diethyl ether (20 mL) dropwise at -30°C. Once the addition was complete, the temperature was allowed to rise to 0°C. The reaction mixture was stirred at same temperature for 6 h and then placed overnight in a cold room (+3°C). After completion of the reaction (TLC), the reaction mixture was washed with 1 N NaOH (pH >10) and later with water till the washings were neutral pH. The extract was washed with brine, dried over anhydrous Na2S04 and solvent was removed under reduced pressure. The crude residue was purified by silica gel column chromatography (elution, 10% EtOAc in hexanes) to afford the title compound. Yield: 1.21 g (57.1%).
1H NMR (300 MHz, CDC : δ 5.38 (t, J = 6.0 Hz, 1H), 4.60 (d, J = 1.2 Hz, 2H),2.72 (t, J = 6.3 Hz, 1H), 2.23-2.12 (m, 2H), 2.04 (s, 3H), 1.72 (s, 3H), 1.69-1.62 (m, 2H), 1.30 (s, 3H), 1.26 (s, 3H).
Step 2: Synthesis of (E)-3-methyl-6-oxohex-2-en-l -yl acetate (Compound 8a-ii):
Figure imgf000047_0003
In a 250 mL round bottom flask, a solution of (E)-5-(3,3-dimethyloxiran-2-yl)-3- methylpent-2-en-l-yl acetate (1.0 g, 4.71 mmol) in 1,4-dioxane (15 mL) was treated with a solution of NaI04 (2.01 g, 9.43 mmol) in water (20 mL) at RT. The reaction mixture was stirred at same temperature for 24 h. After completion of reaction (TLC), the inorganic salts were filtered through Celite® pad. The filtrate was extracted with EtOAc (100 mL x 3). The combined organic extract was washed with water, brine and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elution, 5-15% EtOAc in hexanes) to afford the title compound. Yield: 0.82 g (quant).
1H NMR (400 MHz, CDCh): δ 9.80 (s, 1H), 5.36-5.35 (m, 1H), 4.58 (d, J = 6.8 Hz, 2H), 2.59-2.37 (m, 4H), 2.35 (s, 3H), 1.71 (s, 3H).
Step 3: Synthesis of (E)-6-acetoxy-4-methylhex-4-enoic acid (Compound 8a-iii):
Figure imgf000048_0001
In a 250 mL round bottom flask, freshly prepared Jones reagent (10 mL) was added dropwise to a solution of (E)-3-methyl-6-oxohex-2-en-l-yl acetate (0.8 g, 4.54 mmol) in acetone (14 mL) till the orange color of solution persisted. After completion of the reaction (TLC), the reaction mixture was diluted with EtOAc and washed with water until pH 3. The organic layer was separated, washed with brine and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was used in the next step without further purification. Yield: 0.66g (crude).
1H NMR (300 MHz, DMSO-dfi): δ 12.85 (brs, 1H) 5.27 (t, /
Hz, 2H), 2.33-2.18 (m, 4H), 1.99 (s, 3H), 1.64 (s, 3H).
Step 4: Synthesis of methyl (E)-6-hydroxy-4-methylhex-4-enoate (Compound 8a-iv):
Figure imgf000048_0002
In a 100 mL round bottom flask, a solution of (E)-6-acetoxy-4-methylhex-4-enoic acid (1.1 g, 5.90 mmol) in methanol (20 mL) was treated with concentrated H2S04 (3 drops). The reaction mixture was stirred for 12 h at RT. After completion of the reaction (TLC), the reaction mixture was diluted with EtOAc (100 mL) and washed with water. The organic layer was separated and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was used in next step without further purification. Yield: 0.91 g- 1H NMR (300 MHz, COCh): δ 5.44 (t, J = 6.9 Hz, 1H), 4.16 (d, J = 6.9 Hz, 2H), 3.67 (s, 3H), 2.48-2.34 (m, 4H), 1.68 (s, 3H).
Step-5: Synthesis of methyl (E)-6-bromo-4-methylhex-4-enoate (Compound 8a-v):
Figure imgf000049_0001
In a 100 mL round bottom flask, a solution of methyl (E)-6-hydroxy-4-methylhex-4- enoate (5.0 g, 31.6 mmol) in THF (90 mL) were treated with CBr4 (15.61 g, 47.0 mmol) and PPh3 (12.43 g, 47.0 mmol) under inert atmosphere. The reaction mixture was stirred for 4 h at RT. After completion of reaction (TLC), the reaction mixture was diluted with diethyl ether and the solid formed was filtered through a Celite® pad. The filtrate was dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elution, 5-10% EtOAc in hexanes) to afford the title compound. Yield: 5.53 g (72.1%)
1H NMR (400 MHz, CDC : δ 5.57 (t, J = 8.4 Hz, 1H), 4.03 (d, J = 8.4 Hz, 2H), 3.68 (s, 3H), 2.47-2.38 (m, 4H), 1.74 (s, 3H).
Step-6: Synthesis of 2-((methylamino) methyl jphenol (Compound 8a-vi):
Figure imgf000049_0002
In a 250 mL round bottom flask, a solution of methyl amine hydrochloride (5.52 g, 81.8 mmol) in MeOH (50 mL) was treated with Et3N (13.36 mL, 98.2 mmol) at RT. The mixture was stirred at RT for 30 min and treated with a solution of salicylaldehyde (10.0 g, 81.8 mmol) in MeOH (50 mL) at RT under nitrogen atmosphere. The resulting mixture was stirred at RT for 1 h. The mixture was cooled to 0°C and NaBH4 (3.09 g, 31.8 mmol) was added in portions at RT. The reaction mixture was stirred at RT for 2 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue obtained was diluted with cold water and extracted with EtOAc (300 mL x 2). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to afford the title compound, which was used in next step without further purification. Yield: 9.11 g (81.3%). 1H NMR (300 MHz, DMSO-cU: δ 7.07-7.01 (m, 2H), 6.71-6.65 (m, 2H), 5.86 (brs, 2H), 3.75
(s, 2H), 2.25 (s, 3H).
LCMS (ESI+. m/z : 138.2 (M+H)+.
Step-7: Synthesis of 4-(furan-2-yl)benzoic acid (Compound 8a-vii):
Figure imgf000050_0001
In a 100 mL resealable reaction tube, 4-iodobenzoic acid (15.0 g, 60.48 mmol) and furan-2-ylboronic acid (13.5 g, 129.0 mmol) were dissolved in degassed DMF (375 mL) and water (70 mL) at RT under nitrogen atmosphere. Pd(PPh3)4 (6.97 g, 6.0 mmol), K2C03 (25.04 g, 181.2 mmol) were sequentially added to the above solution under nitrogen atmosphere. The resulting mixture was degassed by purging with argon gas for 15 min, and reaction mixture was heated to 90°C until completion of the reaction (TLC). The reaction mixture was cooled to RT, diluted with cold water and washed with ethyl acetate (3 x 30 mL). The aqueous layer was separated and acidified to pH 3 with concentrated HC1, before extracting with EtOAc (400 mL x 2). The combined extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure to get the title compound as light yellow solid. Yield: 11.37 g (quant).
1H NMR (300 MHz, DMSO-dfi): δ 12.95 (brs, 1H), 7.97 (d, J = 8.1 Hz, 2H), 7.82-7.78 (m, 3H), 7.13 (d, J = 3.6 Hz, 1H), 6.64-6.63 (m, 1H),
LCMS (ESI-. m z): 186.9 (M-H)~.
Synthesis of4-(furan-2-yl)-N-(2-hydroxybenzyl)-N-methylbenzamide (Compound Sa
Figure imgf000050_0002
i a 250 mL round bottom flask, a stirred solution of 2-((methylamino)methyl)phenol (5.0 g, 36.44 mmol) and 4-(furan-2-yl)benzoic acid (6.82 g, 36.44 mmol) in DMF (50 mL) was treated with EDCI.HC1 (10.44 g, 54.66 mmol), HOBt (7.42 g, 54.66 mmol) and Et3N (10.2 mL, 72.89 mmol) at RT under nitrogen atmosphere. The reaction mixture was stirred at RT for 12 h under nitrogen atmosphere. Upon completion of reaction (TLC), the reaction mixture was diluted with cold water, and extracted with EtOAc (30 mL x 2). The combined organic extract was washed with saturated NaHC03, brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure and residue obtained was purified by silica gel column chromatography (elution, 10% EtOAc-hexanes) to yield the title compound. Yield: 5.23 g (46.8%).
1H NMR (300 MHz, CDC : δ 9.89 (brs, 1H), 7.72 (d, J = 8.4 Hz, 2H), 7.53-7.50 (m, 3H), 7.27-7.25 (m, 1H), 7.18 (d, J = 9.0 Hz, 1H), 7.01 (d, J = 7.8 Hz, 1H), 6.86 (t, J = 7.5 Hz, 1H), 6.75 (d, J = 3.3 Hz, 1H), 6.50-6.49 (m, 1H), 4.62 (s, 2H), 3.07 (s, 3H).
LCMS (ESI+, m/z): 307.8 (M+H)+.
Step-9: Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)- -methylhex-4-enoate (Compound 8a-ix):
Figure imgf000051_0001
In a 250 mL round bottom flask, a stirred solution of 4-(furan-2-yl)-N-(2- hydroxybenzyl)-N-methylbenzamide (2.5 g, 8.14 mmol) in DMF (50 mL) was treated with K2C03 (3.37 g, 24.42 mmol) and methyl (E)-6-bromo-4-methylhex-4-enoate (2.15 g, 9.77 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was stirred at RT for 12 h. After completion of the reaction (TLC), the reaction mixture was cooled to RT, filtered and washed with ethyl acetate. The filtrate was concentrated under reduced pressure and residue obtained was diluted with cold water (50 mL), before extracting with ethyl acetate (200 mL). The organic layer was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elution, 15-30% EtOAc in hexanes) to afford the title compound. Yield: 0.90 g (23.6%).
LCMS (ESI+, m/z): 448.3 (M+H)+ and 470.1 (M+Na)+. Step-10: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-4- methylhex-4-enoic acid (Compound 8a):
Figure imgf000052_0001
In a 100 mL round bottom flask, a stirred solution of methyl (E)-6-(2-((4-(furan-2-yl)- N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.9 g, 1.88 mmol) in THF (20 mL), EtOH (6 mL) and water (6 mL), was treated with lithium hydroxide monohydrate (0.4 g, 9.43 mmol) at RT. The reaction mixture was stirred at RT for 3 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue obtained was washed with EtOAc, diluted with cold water and acidified with 1 N HC1. The aqueous layer was extracted with EtOAc (25 mL x 3). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to give the title compound. Yield: 0.38 g (46.5%).
1H NMR (400 MHz, DMSO-dfi, 90°C): δ 11.80 (br, 1H), 7.73-7.72 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.27-7.19 (m, 2H), 7.02-6.95 (m, 3H), 6.59-6.58 (m, 1H), 5.44-5.42 (m, 1H), 4.58- 4.55 (m, 4H), 2.51 (s, 3H), 2.33-2.28 (m, 4H), 1.69 (s, 3H).
LCMS (ESI+. m/z): 434.2 (M+H)+ and 456.1 (M+Na)+.
HPLC: 95.12%. (210 nm).
Example 8B: Synthesis of (E)-4-methyl-6-[2-[[methyl-(4-phenylbenzoyl)amino]methyl] phenoxy] hex-4-enoic acid (Compound 8b):
Figure imgf000052_0002
Synthesis ofN-[ (2-hydroxyphenyl)methyl]-N-methyl-4-phenylbenzamide ( Compound
Figure imgf000053_0001
In a 100 mL round bottom flask, a stirred solution of 2-((methylamino)methyl)phenol (1.0 g, 7.28 mmol) and 4-phenylbenzoic acid (1.44 g, 7.28 mmol) in DMF (20 mL) was treated with EDCI.HCl (1.65 g, 7.64 mmol), HOBt (1.17 g, 8.64 mmol) and Et3N (1.46 mL, 10.8 mmol) at RT under nitrogen atmosphere. The reaction mixture was stirred at RT for 12 h under nitrogen atmosphere. Upon completion of reaction (TLC), the reaction mixture was diluted with cold water, and extracted with EtOAc (30 mL x 2). The combined organic extract was washed with saturated NaHC03, brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure and residue obtained was purified by silica gel column chromatography (elution, 10% EtOAc-hexanes) to yield title compound. Yield: 0.51 g (22.1%).
1H NMR (400 MHz, CDCK): δ 9.94 (brs, 1H), 7.65-7.56 (m, 6H), 7.50-7.37 (m, 3H), 7.31 (d, J = 1.6 Hz, 1H), 7.20 (d, J = 1.6 Hz, 1H), 7.02 (d, J = 8.0 Hz, 1H), 6.87 (t, J = 1.2 Hz, 1H), 4.64 (s, 2H), 3.10 (s, 3H).
LCMS (ESI+. m z): 318.1 (M+H)+.
Step-2: Synthesis of methyl (E)-4-methyl-6- [2- [[methyl-(4-phenylbenzoyl)amino] methyl] phenoxy]hex-4-enoate (Compound 8b-ii):
Figure imgf000053_0002
In a 100 mL round bottom flask, a solution of N-[(2-hydroxyphenyl)methyl]-N- methyl-4-phenyl-benzamide (0.43 g, 1.35 mmol) in DMF (15 mL) was treated with potassium carbonate (0.56 g, 4.05 mmol) and methyl (E)-6-bromo-4-methylhex-4-enoate (0.89 g, 4.06 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was heated at 70°C with constant stirring for 12 h. The reaction mixture was cooled to RT, filtered and washed with ethyl acetate. The filtrate was concentrated under reduced pressure and residue obtained was diluted with cold water (50 mL), before extracting with ethyl acetate (200 mL). The organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elution, 15-30 % EtOAc in hexanes) to afford the title compound. Yield: 0.24 g (38.2%).
LCMS (ESI+, m/z): 458.4 (M+H)+ and 480.0 (M+Na)+.
Step-3: Synthesis of(E)-4-methyl-6-[2-[[methyl-(4-phenylbenzoyl) amino] methyl] phenoxy] hex-4-enoic acid (Compound 8b-iii):
Figure imgf000054_0001
In a 100 mL round bottom flask, a stirred solution of methyl (E)-4-methyl-6-[2- [[methyl-(4-phenylbenzoyl)amino]methyl]phenoxy]hex-4-enoate (0.23 g, 0.502 mmol) in THF (6 mL), EtOH (2 mL) and water (2 mL), was treated with lithium hydroxide
monohydrate (0.105 g, 2.51 mmol) at RT. The reaction mixture was stirred at RT for 5 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue was washed with EtOAc, diluted with cold water and acidified with 1 N HC1. The aqueous layer was extracted with EtOAc (25 mL x 3). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to give the crude residue. The product was purified over a silica gel preparative TLC (elution, 50% EtOAc in hexanes) to give the title compound. Yield: 0.031 g (13.9%; based on pure isolated material with HPLC purity >95%).
1H NMR (400 MHz, DMSO-d^60°C): δ 7.72-7.68 (m, 4H), 7.52-7.46 (m, 4H), 7.40-7.39 (m, 1H), 7.28-7.20 (m, 2H), 7.03-6.96 (m, 2H), 5.45 (brs, 1H), 4.57 (br, 4H), 2.90 (s, 3H), 2.27 (m, 4H), 1.69 (s, 3H).
LCMS (ESI+, m/z): 444.2 (M+H)+ and 466.2 (M+Na)+.
HPLC: 96.30% (210 nm). Example 8C: Synthesis of (E)-6-(2-((3-fluoro-4-(furan-2-yl)-N- methylbenzamido)methyl) phenoxy)-4-methylhex-4-enoic acid {Compound 8c):
Figure imgf000055_0001
Step-1: Synthesis of 3-fluoro-4-(furan-2-yl)benzoic acid (Compound 8c-i):
Figure imgf000055_0002
The title compound was synthesized from 4-bromo-3-fluorobenzoic acid (1.50 g, 6.84 mmol) and furan-2-ylboronic acid (1.53 g, 13.69 mmol) following the experimental procedure described in step-7 of Example 8A. Yield: 0.68 g (48.2%).
1H NMR (400 MHz, DMSO-dfi): δ 13.35 (brs, 1H), 7.94-7.90 (m, 2H), 7.86 (d, J = 8.4 Hz, 1H), 7.80 (d, J = 8.0 Hz, 1H), 7.04 (t, J = 1.8 Hz, 1H), 6.73-6.72 (m, 1H).
Step-2: Synthesis of 3-fluoro-4-(furan-2-yl)-N-(2-hydroxybenzyl)-N-methylbenzamide
(Compound 8c-ii):
Figure imgf000055_0003
The title compound was synthesized from 2-((methylamino)methyl)phenol (0.4 g, 2.91 mmol) and 3-fluoro-4-(furan-2-yl)benzoic acid (0.60 g, 2.91 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 0.60 g (63.8%).
1H NMR (300 MHz, CDC : δ 9.73 (brs, 1H), 7.90 (t, J = 7.8 Hz, 1H), 7.53 (brs, 1H), 7.35- 7.28 (m, 2H), 7.18 (d, J = 6.3 Hz, 2H),7.01 (d, J = 8.1 Hz, 1H), 6.95-6.92 (m, 1H), 6.82 (t, J = 7.2 Hz, 1H), 6.55-6.53 (m, 1H), 4.61 (s, 2H), 3.08 (s, 3H).
LCMS (ESI+. m/z : 326.2 (M+H)+ . Step-3: Synthesis of methyl (E)-6-(2-((3-fluoro-4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)-4-methylhex-4-enoate (Compound 8c-iii):
Figure imgf000056_0001
The title compound was synthesized from 3-fluoro-4-(furan-2-yl)-N-(2-hydroxy benzyl)-N-methylbenzamide (0.43 g, 1.32 mmol) and methyl (E)-6-bromo-4-methylhex-4- enoate (0.873 g, 3.96 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.310 g (50.4%).
LCMS (ESI, m/z): 466.2 (M+H)+ and 488.3 (M+Na)+.
Step-4: Synthesis of (E)-6-(2-((3-fluoro-4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)- -methylhex-4-enoic acid (Compound 8c)
Figure imgf000056_0002
The title compound was synthesized from methyl (E)-6-(2-((3-fluoro-4-(furan-2-yl)- N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.3 g, 0.64 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.110 g (32.2%). 1H NMR (400 MHz, DMSO-d6, 90°C): δ 11.78 (brs, IH), 7.84-7.80 (m, 2H), 7.35-7.32 (m, 2H), 7.27 (t, J = 1.6 Hz, IH), 7.22 (d, J = 1.2 Hz, IH), 7.03 (d, J = 8.0 Hz, IH), 6.99 (t, J = 1.2 Hz, IH), 6.91-6.90 (m, IH), 6.66-6.58 (m, IH), 5.54 (brs, IH), 4.58 (brs, 4H), 2.89 (s, 3H), 2.33-2.27 (m, 4H), 1.69 (s, 3H).
LCMS (ESI+, m/z): 452.1(M+H)+ and 474.1 (M+Na)+
HPLC: 99.0 % (210 nm). Example 8D: (E)-6-(2-((3-chloro-4-(furan-2-yl)-N-methylbenzamido)methyl)phi methylhex-4-enoic acid {Compound 8d):
Figure imgf000057_0001
Step-1: Synthesis of 3-chloro-4-(furan-2-yl)benzoic acid (Compound 8d-i):
Figure imgf000057_0002
The title compound was synthesized from 3-chloro-4-bromobenzoic acid (2.0 g, 8.51 mmol) and furan-2-ylboronic acid (1.91 g, 17.02 mmol) following the experimental procedure described in step-7 of Example 8A. Yield: 1.53 g (79.8%)
1H NMR (400 MHz. CD.OD): δ 8.11 (s, IH), 8.00 (s, IH), 7.83 (s, IH), 7.72 (d, J = 1.2 Hz, IH), 7.34 (d, J = 3.2 Hz, IH), 6.65-6.64 (m, IH).
Step-2: Synthesis of 3-chloro-4-(furan-2-yl)-N-(2-hydroxybenzyl)-N-methylbenzamide
( Compound 8d-ii):
Figure imgf000057_0003
The title compound was synthesized from 2-((methylamino)methyl)phenol (1.3 g, 5.85 mmol) and 3-chloro-4-(furan-2-yl)benzoic acid (0.96 g, 7.02 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 1.21 g (60.3%).
LCMS (ESI+. m/z): 342.1 (M+H)+. Step-3: Synthesis of methyl (E)-6-(2-((3-chloro-4-(furan-2-yl)-N-methylbenzamido) meth l)phenoxy)-4-methylhex-4-enoate (Compound 8d-iii):
Figure imgf000058_0001
The title compound was synthesized from 3-chloro-4-(furan-2-yl)-N-(2- hydroxybenzyl)-N-methylbenzamide (0.4 g, 1.17 mmol) and methyl (E)-6-bromo-4- methylhex-4-enoate (0.39 g, 1.75 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.42 g (75.0%).
LCMS (ESI+, m/z): 482.1 (M+H)+ and 504.0 (M+Na)+.
Step-4: Synthesis of (E)-6-(2-((3-chloro-4-(furan-2-yl)-N-methylbenzamido)
methyl)phenoxy)-4-methylhex-4-enoic acid (Compound 8d):
Figure imgf000058_0002
The title compound was synthesized from methyl (E)-6-(2-((3-chloro-4-(furan-2-yl)- N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.41 g, 0.852 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.12 g (30.1%). 1H NMR (400 MHz, DMSO-d^90°C): δ 7.86-7.82 (m, 2H), 7.55 (s, 1H), 7.47 (d, J = 8.0 Hz, 1H), 7.27 (t, J = 1.6 Hz, 1H), 7.22 (d, J = 1.2 Hz, 1H), 7.17 (d, J = 3.2 Hz, 1H), 7.03 (d, J = 8.0 Hz, 1H), 6.98 (t, J = 7.2 Hz, 1H), 6.67-6.66 (m, 1H), 5.44 (br s, 1H), 4.57 (br s, 4H), 2.89 (s, 3H), 2.32-2.27 (m, 4H), 1.69 (s, 3H).
LCMS (ESI+, m/z): 468.2 (M+H)+ and 490.1 (M+Na)+.
HPLC: 99.10 % (210 nm). Example 8E: Synthesis of (E)-4-methyl-6-(2-((N-methyl-4-(5-methylfuran-2- yl)benzamido) methyl)phenoxy)hex-4-enoic acid {Compound 8e):
e
Figure imgf000059_0001
Step-1: Synthesis of 4-(5-methylfuran-2-yl)benzoic acid (Compound 8e-i):
Figure imgf000059_0002
The title compound was synthesized from 4-iodobenzoic acid (2.0 g, 8.06 mmol) and 4,4,5,5-tetramethyl-2-(5-methylfuran-2-yl)- l,3,2-dioxaborolane (2.01 g, 9.67 mmol) following the experimental procedure described in step-7 of Example 8A. Yield: 1.96 g (crude)
1H NMR (400 MHz, DMSO-dfi): δ 13.0 (br, 1H), 7.96 (d, J = 8.4 Hz, 2H), 7.75 (d, J = 8.4 Hz, 2H), 7.01 (d, J = 3.2 Hz, 1H), 6.27 (m, 1H), 2.36 (s, 3H).
LCMS (ESI+. m/z : 203.2 (M+H)+.
Step-2: Synthesis ofN-(2-hydroxybenzyl)-N-methyl-4-(5-methylfuran-2-yl)benzamide
(Compound 8e-ii):
e
Figure imgf000059_0003
The title compound was synthesized from 2-((methylamino)methyl)phenol (1.0 g, 7.29 mmol) and 4-(5-methylfuran-2-yl)benzoic acid (1.77 g, 8.75 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 1.52 g (64.1%)
1H NMR (400 MHz, DMSO-d6): δ 9.40 (brs, 1H), 7.67 (d, J = 8.0 Hz, 2H), 7.46 (d, J = 8.0 Hz, 2H), 7.16-7.10 (m, 2H), 6.86-6.81 (m, 3H), 6.20-6.19 (m, 1H), 4.56 (s, 2H), 2.92 (s, 3H), 2.36 (s, 3H). LCMS (ESI+, m/z): 322.3 (M+H)+.
Step-3: Synthesis of methyl (E)-4-methyl-6-(2-((N-methyl-4-(5-methylfuran-2-yl) benzamido) methyl )phenoxy)hex-4 -enoate (Compound 8e-iii):
Figure imgf000060_0001
The title compound was synthesized from N-(2-hydroxybenzyl)-N-methyl-4-(5- methylfuran-2-yl)benzamide (0.5 g, 1.55 mmol) and methyl (E)-6-bromo-4-methylhex-4- enoate (0.516 g, 2.33 mmol) following the experimental procedure described in step-9 of Example 8A.
Yield: 0.26 g (37.3%)
1H NMR (300 MHz, DMSO-d^90°C): δ 7.66 (d, J = 8.0 Hz, 2H), 7.44 (d, J = 8.4 Hz, 2H), 7.27 (t, J = 7.2 Hz, 1H), 7.20 (d, J = 7.2 Hz, 1H), 7.01- 6.94 (m, 2H), 6.82 (d, J = 3.2 Hz, 1H), 6.20 (d, J = 2.8 Hz, 1H), 5.42 (brs, 1H), 4.57-4.55 (m, 4H), 3.57 (s, 3H), 2.89 (s, 3H), 2.41-2.25 (m, 4H), 2.36 (s, 3H), 1.69 (s, 3H).
LCMS (ESI+, m/z): 462.1 (M+H)+ and 484.1 (M+Na)+ .
Step-4: Synthesis of (E)-4-methyl-6-(2-((N-methyl-4-( 5-methylfuran-2-yl)benzamido ) methyl)phenoxy)hex-4-enoic acid (Compound 8e):
e
Figure imgf000060_0002
The title compound was synthesized from methyl methyl (E)-4-methyl-6-(2-((N- methyl-4-(5-methylfuran-2-yl)benzamido)methyl)phenoxy)hex-4-enoate (0.26 g, 0.56 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.18 g (71.4%). 1H NMR (300 MHz, DMSO-d^ 90°C): δ 7.67 (d, J = 8.0 Hz, 2H),), 7.45 (d, J = 8.4 Hz, 2H), 7.25 (t, J = 8.0 Hz, 1H), 7.19 (d, / = 7.2 Hz, 1H), 7.02 (d, J = 8.0 Hz, 1H), 6.97 (t, J = 7.6 Hz, 1H), 6.83 (d, J = 2.8 Hz, 1H), 6.20-6.19 (m, 1H), 5.39 (brs, 1H), 4.57-4.53 (m, 4H), 2.89 (s, 3H), 2.36 (s, 3H), 2.24 (t, J = 8.4 Hz, 2H), 2.02 (t, J = 8.4 Hz, 2H), 1.67 (s, 3H).
LCMS (ESI+. m z): 448.2 (M+H)+ and 470.1 (M+Na)+.
HPLC: 93.7% (210 nm).
Example 8F: Synthesis of (E)-6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl) phenoxy)-4-methylhex-4-enoic acid (Compound 8f):
Figure imgf000061_0001
Step-1: Synthesis ofN-(2-hydro.xybenzyl)-N,2-dimethylbenzofuran-5-carboxamide
( Compound 8f-i):
Figure imgf000061_0002
The title compound was synthesized from 2-((methylamino)methyl)phenol (0.2 g, 1.45 mmol) and 2-methylbenzofuran-5-carboxylic acid (0.26 g, 1.45 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 0.28 g (65.1%).
1H NMR (300 MHz, CDCh): δ 10.14 (brs, 1H), 7.66 (d, J = 1.5 Hz, 1H), 7.43 (d, J = 8.4 Hz, 1H), 7.35 (d, J = 1.5 Hz, 1H), 7.28-7.25 (m, 1H), 7.18 (d, J = 9.0 Hz, 1H), 7.02 (d, J = 8.1 Hz, 1H), 6.83 (t, / = 1.2 Hz, 1H), 6.39 (s, 1H), 4.63 (s, 2H), 3.08 (s, 3H), 2.48 (s, 3H).
LCMS (ESI+. m z): 296.1 (M+H)+. Step-2: Synthesis of methyl (E)-6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl) phenoxy)-4-methylhex-4-enoate (Compound 8f-ii):
Figure imgf000062_0001
The title compound was synthesized from N-(2-hydroxybenzyl)-N,2- dimethylbenzofuran-5-carboxamide (0.28 g, 0.95 mmol) and methyl (E)-6-bromo-4- methylhex-4-enoate (0.271 g, 1.23 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.18 g (45.6%)
LCMS (ESI+, m/z): 436.4 (M+H)+ and 458.3 (M+Na)+.
Step-3: Synthesis of (E)-6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl) phenoxy)-4- methylhex-4-enoic acid (Compound 8f):
Figure imgf000062_0002
The title compound was synthesized from methyl (E)-6-(2-((N,2-dimethylbenzofuran- 5-carboxamido)methyl)phenoxy)-4-methylhex-4-enoate (0.18 g, 0.41 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.085 g (48.8%).
1H NMR (400 MHz, DMSO-dfi, 70°C): δ 7.58 (br s, IH), 7.49 (d, J = 8.0 Hz, IH), 7.27-7.19 (m, 3H), 7.02-6.95 (m, 2H), 6.59 (brs, IH), 5.41 (s, IH), 4.57-4.54 (m, 4H), 2.88 (s, 3H), 2.46 (s, 3H), 2.31-2.26 (m, 4H), 1.68 (s, 3H).
LCMS (ESI+, m/z): 422.2 (M+H)+.
HPLC: 95.41 % (210 nm). Example-8G: Synthesis of (E)-6-(4-fluoro-2-((4-(furan-2-yl)-N-methylbenzamido) methyl) phenoxy)-4-methylhex-4-enoic acid {Compound 8g):
Figure imgf000063_0001
Synthesis of 4-fluoro-2-( ( methylamino )methyl)phenol ( Compound 8g-i)
Figure imgf000063_0002
The title compound was synthesized 5-fluoro-2-hydroxybenzaldehyde (1.5 g, 10.71 mmol) and methyl amine hydrochloride (3.58 g, 53.57 mmol) following the experimental procedure described in step-6 of Example 8A. Yield: 1.28 g (72.3%).
1H NMR (400 MHz, CDCK): δ 6.82-6.87 (m, 1H), 6.56-6.68 (m, 2H), 3.92 (s, 2H), 2.47 (s, 3H).
LCMS (ESI+. m/z): 156.2 (M+H)+.
Step-2: Synthesis ofN-(5-fluoro-2-hydroxybenzyl)-4-(furan-2-yl)-N-methylbenzamide
( Compound 8g-ii)
Figure imgf000063_0003
The title compound was synthesized from of 4-fluoro-2-((methylamino)methyl) phenol (0.844 g, 5.31 mmol) and 4-(furan-2-yl)benzoic acid (1.0 g, 5.31 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 1.23 g (71.1%).
1H NMR (400 MHz. CDCK): δ 9.80 (brs, 1H), 7.71 (d, J =8.4 Hz, 2H), 7.52 (d, J = 8.4 Hz, 2H), 7.51 (s, 1H), 6.99-6.87 (m, 3H), 6.74 (d, J = 3.2 Hz, 1H), 6.50 (d, J = 5.2 Hz, 1H), 4.58 (s, 2H), 3.09 (s, 3H). LCMS (ESI+. m/z): 326.2 (M+H)+.
Step-3: Synthesis of methyl (E)-6-(4-fluoro-2-((4-(furan-2-yl)-N-methylbenzamido) meth l)phenoxy)-4-methylhex-4-enoate (Compound 8g-iii):
Figure imgf000064_0001
The title compound was synthesized from N-(5-fluoro-2-hydroxybenzyl)-4-(furan-2- yl)-N-methylbenzamide (0.4 g, 1.23 mmol) and methyl (E)-6-bromo-4-methylhex-4-enoate (0.815g, 3.69 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.321 g (56.1%).
LCMS (ESI+, m/z): 466.1 (M+H)+ and 488.2 (M+Na)+.
Step-4: Synthesis of (E)-6-(4-fluoro-2-((4-(furan-2-yl)-N-methylbenzamido) methyl )phenoxy)- -methylhex-4-enoic acid (Compound 8g):
Figure imgf000064_0002
The title compound was synthesized from methyl (E)-6-(4-fluoro-2-((4-(furan-2-yl)- N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.3g, 0.645 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.225 g (77.3%) 1H NMR (400 MHz, DMSO-dfi, 90°C): δ 7.74-7.72 (m, 3H), 7.45 (d, J = 8 Hz, 2H), 7.04- 6.95 (m, 4H), 6.59 (brs, IH), 5.42-5.39 (m, IH), 4.56-4.54 (m, 4H), 2.92 (s, 3H), 2.32-2.27 (m, 4H) 1.68 (s, 3H).
LCMS (ESI+, m/z): 452.2 (M+H)+ and 474.1 (M+Na)+.
HPLC: 96.05% (210 nm). Example 8H: Synthesis of 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phi methylhexanoic acid {Compound 8h):
Figure imgf000065_0001
Synthetic Scheme:
Figure imgf000065_0002
Reagents and conditions: a) Raney nickel, EtOH, H2 (atm), RT, 5 h; b) LiOH.H20, THF, EtOH, H20, RT.
Step-1: Synthesis of methyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-4- methylhexanoate ( Compound 8h-i)
Figure imgf000065_0003
In 100 mL round bottom flask, a stirred and degassed solution of methyl (E)-6-(2-((4- (furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.40 g, 0.89 mmol) in EtOH (15 mL), was treated with Raney nickel (-100 mg) at RT. The reaction mixture was stirred at RT for 5 h under an atmosphere of hydrogen. Upon completion of reaction (TLC), the reaction mixture was filtered and concentrated under reduced pressure to afford the title compound. Yield: 0.385 g (96.0%). LCMS (ESI+. m/z): 450.3 (M+H)+
Step-2: Synthesis of6-(2-((4-(furan-2-yl)-N-me†hylbenzamido)me†hyl)phenoxy)-4- methylhexanoic acid (Compound 8h):
Figure imgf000066_0001
The title compound was synthesized from methyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-4-methylhexanoate (0.380 g, 0.85 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.231 g (62.7%).
1H NMR (400 MHz, DMSO-dfi, 90 °C): δ 11.67 (brs, IH), 7.74-7.72 (m, 3H), 7.48 (d, J = 8.4 Hz, 2H), 7.28 (t, J = 7.6 Hz, IH), 7.21 (d, J = 7.2 Hz, IH), 7.02-6.95 (m, 3H), 6.60-6.59 (m, IH), 4.59 (s, 2H), 4.05-4.01 (m, 2H), 2.91 (s, 3H), 2.24-2.19 (m, 2H), 1.74-1.42 (m, 5H), 0.91 (d, J = 6.4 Hz, 3H).
LCMS (ESI+./77/z): 436.1 (M+H)+ and 458.1 (M+Na)+.
HPLC: 95.34% (210 nm).
Example 81: Synthesis of (£)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-3-methylhex-2-enoic acid (Compound 8i):
Figure imgf000066_0002
Synthetic Scheme:
Figure imgf000067_0001
Reagents and conditions: a) TBDPSC1, imidazole, DCM, RT, 12 h; b) Triethyl
phosphonoacetate, NaH, THF, RT, 12 h; c) TBAF (1.0 M, THF), THF, RT, 30 min; d) CBr4, PPh3, THF, RT, 12 h.
Synthesis of 5-((tert-butyldiphenylsilyl)oxy)pentan-2-one (Compound 8i-i):
O
A^OTBDPS
In a 100 mL round bottom flask, a solution of 5-hydroxypentan-2-one (5.0 g, 49.01 mmol) and imidazole (8.33 g, 122.5 mmol) in DCM (50 mL) was treated with TBDPSC1 (16.16 g, 58.80 mmol) at 0°C under N2 atmosphere. The resulting reaction mixture was stirred at RT for 12 h. Upon completion of reaction (TLC), the reaction mixture was quenched with water and extracted with DCM (2 xlOO mL). The organic extract was separated and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 100% hexanes) to afford the title compound. Yield: 4.2 g (25.2%).
1H NMR (300 MHz, CDC : δ 7.73-7.64 (m, 4H), 7.42-7.35 (m, 6H), 3.66 (t, J = 6.0 Hz, 2H), 2.54 (t, J = 7.2 Hz, 2H), 2.13 (s, 3H), 1.90-1.73 (m, 2H), 1.04 (s, 9H).
Step-2: Synthesis of ethyl (E)-6-((tert-butyldiphenylsilyl)oxy)-3-methylhex-2-enoate
(Compound 8i-ii):
Figure imgf000067_0002
In a 100 mL two neck round bottom flask, a suspension of NaH (0.07 g, 1.75 mmol) in THF (10 mL) was treated with triethyl phosphonoacetate (0.29 mL, 1.47 mmol) at -78°C under nitrogen atmosphere. The resulting reaction mixture was stirred for 30 min at -78°C. A solution of 5-((iert-butyldiphenylsilyl)oxy)pentan-2-one (0.51 g, 1.47 mmol) in THF (10 mL) was added dropwise to the above reaction mixture at -78°C under nitrogen atmosphere. The reaction mixture was stirred for 12 h at RT under nitrogen atmosphere. Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water and extracted with EtOAc (2 xlOO mL). The organic extract was washed with brine (100 mL) and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 2% EtOAc in hexanes) to afford the title compound. Yield: 0.185 g (30.6%)
1H NMR (300 MHz, CD^OD): δ 7.67-7.64 (m, 4H), 7.42-7.39 (m, 6H), 5.68 (s, 1H), 4.12 (q, J = 6.9 Hz, 2H), 3.66 (t, J = 6.0 Hz, 2H), 2.24 (t, J = 1.2 Hz, 2H), 2.17 (s, 3H), 1.78-1.73 (m, 2H), 1.25 (t, J = 7.2 Hz, 3H), 1.04 (s, 9H).
Step-3: Synthesis of ethyl (E)-6-hydroxy-3-methylhex-2-enoate (Compound 8i-iii):
Figure imgf000068_0001
In a 50 mL round bottom flask, a solution of ethyl (E)-6-((tert- butyldiphenylsilyl)oxy)-3-methylhex-2-enoate (1.0 g, 2.43 mmol) in THF (15 mL) was treated with 1M solution of TBAF in THF (3.07 mL, 3.07 mmol) at 0°C under nitrogen atmosphere. The resulting reaction mixture was stirred for 30 min at RT. Upon completion of reaction (TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2 x 100 mL). The organic extract was dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel chromatography (elution, 20% EtOAc in hexanes) to yield the title compound. Yield: 0.33 g (78.7%).
1H NMR (400 MHz, CDCK): δ 5.69 (s, 1H), 4.14 (q, J = 1.2 Hz, 2H), 3.66 (t, J = 6.4 Hz, 2H), 3.55 (br s, 1H); 2.24 (t, J = 7.2 Hz, 2H), 2.17 (s, 3H), 1.78-1.73 (m, 2H), 1.27 (t, J = 7.2 Hz, 3H)
LCMS (ESI+, m/z): 173.1 (M+H)+.
Step-4: Synthesis of ethyl (E)-6-bromo-3-methylhex-2-enoate (Compound 8i-iv):
Figure imgf000068_0002
The title compound was synthesized from ethyl (E)-6-hydroxy-3-methylhex-2-enoate (0.33 g, 1.90 mmol) following the experimental procedure described in step-2 of Example 8CC.
Yield: 0.26 g (57.8%).
1H NMR (400 MHz, CDCK): δ 5.70 (s, IH), 4.16 (q, J = 12 Hz, 2H), 3.39 (t, J = 6.4 Hz, 2H), 2.30 (t, J = 7.6 Hz, 2H), 2.16 (s, 3H), 2.06-2.00 (m, 2H), 1.27 (t, J = 7.2 Hz, 3H).
Step-5: Synthesis of ethyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)-3- methylhex-2-enoate (Compound 8i-v):
Figure imgf000069_0001
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.30 g, 1.01 mmol) and ethyl (E)-6-bromo-3-methylhex-2-enoate (0.275 g, 1.07 mmol) following the experimental procedure described in step-3 of Example 8CC.
Yield: 0.42 g (93.3%).
LCMS (ESI+, m/z) 462.4 (M+H)+ and 484.1 (M+Na)+-
Step-5: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-3- meth lhex-2-enoic acid (Compound 8i):
Figure imgf000069_0002
The title compound was synthesized from ethyl (E)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-3-methylhex-2-enoate (0.4 g, 0.86 mmol) following the experimental procedure described in step-4 of Example 8CC. Yield: 0.059 g, (15.6%).
1H NMR (400 MHz, DMSO-dfi 90°C): δ 7.74-7.72 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.30- 7.20 (m, 2H), 7.00-6.95 (m, 3H), 6.55-6.58 (m, IH), 5.62 (s, IH), 4.62 (s, 2H), 4.01 (t, J = 6.0 Hz, 2H), 2.91 (s, 3H), 2.25 (t, J = 7.2 Hz, 2H), 2.08 (s, 3H), 1.92-1.86 (m, 2H),
LCMS (ESI+, m z): 434.4 (M+H)+ and 456.1 (M+Na)+. HPLC: 99.14% (210 nm).
Example 8.T: Synthesis of 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phi methylhexanoic acid (Compound 8j):
Figure imgf000070_0001
Synthetic Scheme:
Figure imgf000070_0002
Figure imgf000070_0003
Reagents and conditions: a) NiCl26H20, NaBH4, MeOH; b) LiOH.H20, THF, EtOH, H20.
Step-1: Synthesis of ethyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-3- methylhexanoate (Compound 8j-i):
Figure imgf000070_0004
In a 50 mL round bottom flask, a solution of ethyl (E)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-3-methylhex-2-enoate (0.2 g, 0.44 mmol) in MeOH (10 mL) was treated sequentially with NiCl2.6H20 (0.016 g, 0.08 mmol) and NaBH4 (0.050 g, 1.34 mmol) at 0°C. The reaction mixture was stirred at RT for 1 h. Upon completion of reaction (TLC), the reaction mixture was diluted with water and extracted with EtOAc (2 x50 mL). The organic extract was washed with brine and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by Combi Flash (Silasep™, gradient elution, 10-15% EtOAc in hexanes) to afford the title compound. Yield: 0.15 g (72.5%).
LCMS (ESI+. m/z): 464.2 (M+H)+.
Step-2: Synthesis of6-(2-( ( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy )-3- methylhexanoic acid (Compound 8j):
Figure imgf000071_0001
The title compound was synthesized from ethyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-3-methylhexanoate (0.15 g, 0.32 mmol) following the experimental procedure described in step-4 of Example 8CC. The residue was purified by preparative HPLC [Column: phenomenex (21.2 x 150 mm); Flow: 20 mL/min; mobile phase: A/B = 0.01% TFA in water/ MeCN; T/%B = 0/20, 2/30/ 8 /80] to afford the title compound. Yield: 0.072 g (51.1%).
1H NMR (400 MHz, DMSO-d^60°C): δ 7.75 (s, IH), 7.75 (d, J = 7.6 Hz, 2H), 7.47 (d, J = 7.6 Hz, 2H), 7.26 (m, IH), 7.23-7.19 (m, IH), 6.98-6.95 (m, 3H), 6.60 (brs, IH), 4.58 (brs, 2H), 3.97 (brs, 2H), 2.90 (s, 3H), 2.22-2.19 (m, IH), 2.03-1.99 (m, IH), 1.86 (brs, IH), 1.69 (brs, 2H), 1.42 (brs, IH), 1.26 (brs, IH), 0.89 (d, J = 6.0 Hz, 3H).
LCMS (ESI+, m z): 436.1 (M+H)+ and 458.1 (M+Na)+
HPLC: 98.2% (210 nm). Example 8K: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N- methyIbenzamido)methyl)phenoxy)-2-methylhex-2-enoic acid (Compound 8k):
Figure imgf000072_0001
Reagents and conditions: a) (l-Ethoxycarbonylethylidene)triphenylphosphorane, Mn02, DCM, 12h; b) CBr4, PPh3, THF, RT, 12 h.
Step-1: Synthesis of ethyl (E)-6-hydroxy-2-methylhex-2-enoate (Compound 8k-i):
Figure imgf000072_0002
The title compound was synthesized from butane- 1,4-diol (1.5 g, 16.62 mmol) and (1- ethoxycarbonylethylidene)triphenylphosphorane (14.41 g, 39.88 mmol) following the experimental procedure described in step-1 of Example 8CC. Yield: 1.28 g (44.7%).
1H NMR (400 MHz, COCh): δ 6.76 (t, J = 7.6 Hz, 1H), 4.19 (q, / = 7.2 Hz, 2H), 3.68 (t, J = 6.4 Hz, 2H), 2.28 (t, J = 7.2 Hz, 2H), 2.04-1.99 (m, 2H), 1.87 (s, 3H), 1.29 (t, J = 7.2 Hz, 3H).
LCMS (ESI+. m z): 173.4 (M+H)+.
Step-2: Synthesis of ethyl (E)-6-bromo-2-methylhex-2-enoate (Compound 8k-ii):
Figure imgf000072_0003
The title compound was synthesized from ethyl (E)-6-hydroxy-2-methylhex-2-enoate (0.6 g, 3.48 mmol) following the experimental procedure described in step-2 of Example 8CC.
Yield: 0.465 g (56.7%). 1H NMR (400 MHz, COCh): δ 6.69 (t, J = 7.6 Hz, 1H), 4.19 (q, J = 1.2 Hz, 2H), 3.42 (t, J = 6.4 Hz, 2H), 2.35 (q, J = 7.2 Hz, 2H), 2.04-1.99 (m, 2H), 1.87 (s, 3H), 1.29 (t, J = 7.2 Hz, 3H).
LCMS (ESI+. m/z): 235.1. 237.1 (M+H)+.
Step-3 Synthesis of ethyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)-2- methylhex-2-enoate (Compound 8k-iii):
Figure imgf000073_0001
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) and ethyl (E)-6-bromo-2-methylhex-2-enoate (0.459 g, 1.94 mmol) following the experimental procedure described in step-3 of Example 8CC. Yield: 0.408 g (54.4%).
LCMS (ESI+, m z): 462.2 (M+H)+ and 484.1 (M+Na)+-
Step-4 Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2- methylhex-2-enoic acid (Compound 8k-iv):
Figure imgf000073_0002
The title compound was synthesized from ethyl (E)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-2-methylhex-2-enoate (0.4 g, 0.87 mmol) following the experimental procedure described in step-4 of Example 8CC. Yield: 0.112 g (30.0%).
1H NMR (400 MHz, DMSO-dfi 80°C): δ 7.73 (s, 1H), 7.72 (d, J = 8.4 Hz, 2H), 7.47 (d, J = 8.4 Hz, 2H), 7.26 (m, 1H), 7.20 (d, J = 7.2 Hz, 1H), 7.00-6.96 (m, 3H), 6.75 (brs, 1H), 6.60- 6.56 (m, 1H), 4.60 (s, 2H), 4.01 (t, J = 6.0 Hz, 2H), 2.09 (s, 3H), 2.28 (brs, 2H), 1.86-1.83 (m, 2H), 1.71 (s, 3H).
LCMS (ESI+, m z): 434.2 (M+H)+ and 456.0 (M+Na)+
HPLC: 95.12% (210 nm). Example 8L: Synthesis of (E)-7-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenyl) hept-6-enoic acid {Compound 8ί):
Figure imgf000074_0001
Reagents and conditions: a) TBDMSCl, imidazole, DCM, RT, 12h; b) Mn02, DCM, 12 h, RT; c) MeNH2.HCl, NaBH4, MeOH, 12 h, RT; d) 4-(Furan-2-yl)benzoic acid, EDCI.HC1, HOBt, Et3N, DMF, RT; e) Mn02, DCM, 12 h, RT; f) Ethyl 6-hexanoate
triphenylphosphonium bromide, K2C03, 18-Crown-6, THF, 12 h, 60°C; g) LiOH.H20, THF, EtOH, H20, 12 h, RT.
Step-1: Synthesis of (2-(((tert-butyldimethylsilyl)oxy)methyl)phenyl)methanol (Compound HI-
Figure imgf000074_0002
The title compound was synthesized from 1,2-phenylenedimethanol (3.6 g, 26.08 mmol) and TBDMSC1 (3.14 g, 20.86 mmol) following the experimental procedure described in step-lof example-12. Yield: 2.1 g (32.0%).
1H NMR (400 MHz, DMSO-dfi): δ 7.34-7.36 (m, 2H), 7.25-7.23 (m, 2H), 5.07 (t, J = 5.6 Hz, 1H), 4.74 (s, 2H), 4.52 (d, J = 5.2 Hz, 2H), 0.90 (s, 9H), 0.07 (s, 6H).
Step-2: Synthesis of2-(((tert-but ldimethylsilyl)oxy)methyl)benzaldehyde (Compound 8C-ii) :
Figure imgf000075_0001
In a 100 mL round bottom flask, a solution of (2-(((tert- butyldimethylsilyl)oxy)methyl)phenyl)methanol (2.0 g, 7.93 mmol) in DCM (20 mL) was treated with Mn02 (14.0 g, 158.73 mmol) at RT. The resulting reaction mixture was stirred at RT for 12 h. Upon completion of reaction (TLC), the reaction mixture was filtered through a Celite® pad. The filtrate was concentrated under reduced pressure to get the title compound. Yield: 1.9 g (96.0%).
1H NMR (400 MHz, DMSO-dg): δ 10.2 (s, 1H), 7.91 (d, J = 1.2 Hz, 1H), 7.70-7.68 (m, 2H), 7.52 (d, J = 7.2 Hz, 1H), 5.11 (s, 2H), 0.90 (s, 9H), 0.08 (s, 6H).
Step-3: Synthesis of l-(2-(((tert-butyldimethylsilyl)oxy)methyl)phenyl)-N-methylmethanamine (Compound 8ί-ίίί):
Figure imgf000075_0002
In a 250 mL round bottom flask, a solution of methyl amine hydrochloride (0.485 g, 7.18 mmol) in MeOH (10 mL) was treated with Et3N (1.18 mL, 8.62 mmol) at RT. The mixture was stirred at RT for 30 min. A solution of 2-(((tert- butyldimethylsilyl)oxy)methyl)benzaldehyde (1.8 g, 7.18 mmol) in MeOH (10 mL) was added to the above solution at RT under nitrogen atmosphere. The resulting mixture was stirred at RT for 12 h. The mixture was cooled to 0°C and NaBH4 (0.275 g, 7.18 mmol) was added in portions. The reaction mixture was stirred at RT for further 2 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue obtained was diluted with cold water and extracted with EtOAc (300 mL x 2). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to afford the title compound, which was used in next step without further purification. Yield: 1.4 g (73.6%).
1H NMR (400 MHz. DMSO-dfi): δ 7.39-7.32 (m, 5H), 4.80 (s, 2H), 3.65 (s, 2H), 2.29 (s, 3H),
0.90 (s, 9H), 0.08 (s, 6H).
LCMS (ESI+. m/z : 266.3 (M+H)+.
Step-4: Synthesis of4-(furan-2-yl)-N-(2-(hydroxymethyl)benzyl)-N-methylbenzamide
(Compound 8(-iv):
Figure imgf000076_0001
In a 250 mL round bottom flask, a stirred solution of l-(2-(((tert- butyldimethylsilyl)oxy)methyl)phenyl)-N-methylmethanamine (1.4 g, 5.26 mmol) and 4- (furan-2-yl)benzoic acid (0.9 g, 4.78 mmol) in DMF (10 mL) was treated with EDCI.HC1 (1.11 g, 5.74 mmol), HOBt (0.78 g, 5.74 mmol) and Et3N (1 mL, 7.17 mmol) at RT under nitrogen atmosphere. The reaction mixture was stirred at RT for 12 h under nitrogen atmosphere. Upon completion of reaction (TLC), the reaction mixture was diluted with cold water, and extracted with EtOAc (30 mL x 2). The combined organic extract was washed with saturated NaHC03, brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure and residue obtained was purified by silica gel column chromatography (elution, 10% EtOAc in hexanes) to yield the title compound. Yield: 1.0 g (65.4%).
LCMS (ESI+, m/z): 322.1 (M+H)+.
Step-5: Synthesis ofN-(2-formylbenzyl)-4-(furan-2-yl)-N-methylbenzamide (Compound 81-
Figure imgf000076_0002
In a 100 mL round bottom flask, a solution of 4-(furan-2-yl)-N-(2- (hydroxymethyl)benzyl)-N-methylbenzamide (0.7 g, 2.18 mmol) in DCM (20 mL) was treated with Mn02 (7.5 g, 43.61 mmol) at RT. The resulting reaction mixture was stirred at RT for 12 h. Upon completion of reaction (TLC), the reaction mixture was filtered through a Celite® pad. The filtrate was concentrated under reduced pressure to get the title compound. Yield: 0.6 g (86.3%).
LCMS (ESI+. m z): 320.1 (M+H)+.
Step-6: Synthesis of ethyl (E)-7-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenyl)hept- -enoate (Compound 8ί-νί):
Figure imgf000077_0001
In a 250 mL round bottom flask, a solution of (6-ethoxy-6- oxohexyl)triphenylphosphonium bromide (0.6 g, 1.23 mmol) in THF (10 mL) was treated with K2C03 (0.256 g, 1.85 mmol) and 18-crown-6 (0.06 g, 0.22 mmol) at 0°C under nitrogen atmosphere. After stirring the mixture for 10 min, a solution of N-(2-formylbenzyl)-4-(furan- 2-yl)-N-methylbenzamide (0.395 g, 1.23 mmol) in THF (5 mL) was added to the above mixture under nitrogen atmosphere. The reaction mixture was stirred at 60°C for 12 h. Upon completion of reaction (TLC), the reaction mixture was diluted with ethyl acetate (100 mL) and extracted with water (100 mL). The organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 28% EtOAc in hexanes) to yield the title compound. Yield: 0.21 g (36.1%).
LCMS (ESI+. m/z): 446.3 (M+H)+. Step-7: Synthesis of (E)-7-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenyl)hept-6- enoic acid (Compound 8€):
Figure imgf000078_0001
The title compound was synthesized from ethyl (E)-7-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenyl)hept-6-enoate (0.2 g, 0.44 mmol) following the
experimental procedure described in step-4 of Example 8CC. The compound was purified by preparative HPLC [Gemini NX C 18 (21.2 x 150 mm particle size 5μιη); Flow: 15 mL/min; mobile phase: A/B = 0.01 TFA in water/ MeCN; T/%B = 0/50, 2/50/ 8 /70] to yield the title compound. Yield: 0.055 g (58.1 %).
Ή NMR (400 MHz, DMSO-d^ 60°C): 6 11.79 (brs, 1H), 7.75 (s, 1H), 7.73 (d, J = 8.4 Hz, 2H), 7.46 (d, J = 8.4 Hz, 2H), 7.31-7.27 (m, 3H), 7.18 (brs, 1H), 6.99-6.98 (m, 1H), 6.61-6.59 (m, 1H), 6.45 (brs, 1H), 5.73 (brs, 1H), 4.58 (brs, 2H), 2.84 (s, 3H), 2.10-2.03 (m, 4H), 1.44- 1.29 (m, 4H).
LCMS (ESI+. m/z): 418.2 (M+H)+and 440.2 (M+Na)+.
HPLC: 96.31% (210 nm).
Example 8M: Synthesis of 2-(4-((2-((4-(furan-2-yl)-N- methyIbenzamido)methyl)phenoxy) methyl)phenyl)acetic acid (Compound 8m):
Figure imgf000078_0002
Synthetic Scheme- 1:
Figure imgf000078_0003
Reagents and Conditions: a) TMSC1, MeOH, RT, 1 h. Synthetic Scheme-2:
Figure imgf000079_0001
Reagents and Conditions: a) Methyl 2-(4-(bromomethyl)phenyl)acetate, K2C03,
80°C, 12 h; b) LiOH.H20, THF, MeOH, H20, RT, 4 h.
Synthesis of methyl 2-(4-(bromomethyl)phenyl)acetate (Compound Hm-i):
Figure imgf000079_0002
In a 100 mL round bottom flask, a solution of 2-(4-(bromomethyl)phenyl)acetic acid (2.5 g, 10.91 mmol) in MeOH (50 mL) was treated with TMSC1 (0.2 mL) under nitrogen atmosphere. The reaction mixture was stirred for 1 h at RT. Upon completion of reaction (TLC), the solvent was removed under reduced pressure. The residue obtained was dissolved in methanol and concentrated under reduced pressure to give the title compound. Yield: 2.5 g (94.3%).
1H NMR (300 MHz, CDC : δ 7.36 (d, J = 8.1 Hz, 2H), 7.26 (d, J = 8.4 Hz, 2H), 4.48 (s, 2H), 3.69 (s, 3H), 3.62 (s, 2H).
Step-2: Synthesis of methyl 2-(4-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl) henoxy)methyl)phenyl)acetate (Compound 8m-ii):
Figure imgf000079_0003
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (1.0 g, 3.25 mmol) and methyl 2-(4-(bromomethyl)phenyl)acetate (0.95 g, 3.90 mmol) following the experimental procedure described in step-9 of Example 8 A. Yield: 0.35 g (22.8% yield).
LCMS (ESI+, m/z): 470.1 (M+H)+ and 492.3 (M+Na)+.
Step-3: Synthesis of2-(4-( (2-((4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) methyl )pheny I )acetic acid (Compound 8m):
Figure imgf000080_0001
A stirred solution of methyl 2-(4-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)methyl)phenyl)acetate (0.35 g, 0.74 mmol) in THF (10 mL), MeOH (8 mL) and water (5 mL), was treated with lithium hydroxide monohydrate (0.313 g, 7.46 mmol) at RT. The mixture was stirred at RT for 4 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue obtained was washed with EtOAc, diluted with cold water and acidified with 2 N HCl. The aqueous layer was extracted with EtOAc (3 x 25 mL). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to give the title compound. Yield: 0.201 g (59.8 %).
1H NMR (400 MHz, DMSO-dfi, 90°C): δ 7.72 (s, 1H), 7.70 (d, J = 1.6 Hz, 2H), 7.43 (d, J = 8.0 Hz, 2H), 7.34 (d, J = 7.2 Hz, 2H), 7.27-7.22 (m, 4H), 7.09 (d, J = 8.0 Hz, 1H), 7.0-6.92 (m, 1H), 6.95 (d, J = 3.2 Hz, 1H), 6.60 (brs, 1H), 5.11 (s, 2H), 4.63 (s, 2H), 3.56 (s, 2H), 2.89 (s, 3H).
LCMS (ESI+, m/z): 456.0 (M+H)+ and 478.1 (M+Na)+.
HPLC: 96.87% (210 nm). Example 8N: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)n methylphenoxy)-4-methylhex-4-enoic acid {Compound 8n):
Figure imgf000081_0001
Reagents and Conditions: a) MeNH2.HCl, Et3N, NaBH4, MeOH, RT; b) 4-(Furan-2- yl)benzoic acid, EDCI.HCl, HOBt, Et N, DMF, RT; c) Methyl (E)-6-bromo-4-methylhex-4- enoate, K2C03, DMF, RT; d) LiOH.H20, THF, EtOH, H20, RT.
Step-1: Synthesis of4-methyl-2-((methylamino)methyl)phenol (Compound 8n-i):
Figure imgf000081_0002
The title compound was synthesized from 2-hydroxy-5-methylbenzaldehyde (1.0 g, 7.35 mmol) following the experimental procedure described in step-6 of Example 8 A. Yield: 1.03 g (81.3%).
LCMS (ESI+. m/z): 152.2 (M+H)+. Step 2: Synthesis of4-(furan-2-yl)-N-(2-hydroxy-5-methylbenzyl)-N-methylbenzamide
Compound Hn-d' ):
Figure imgf000082_0001
The title compound was synthesized from 2-((methylamino)methyl)phenol (1.0 g, 6.61 mmol) and 4-(furan-2-yl)benzoic acid (1.24 g, 6.61 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 1.48 g (crude).
LCMS (ESI+. m/z): 322.2 (M+H) +.
Step-3:- Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4- methylphenoxy)-4-methylhex-4-enoate (Compound 8n-iii):
Figure imgf000082_0002
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxy-5- methylbenzyl)-N-methylbenzamide (0.4 g, 1.24 mmol) and methyl (E)-6-bromo-4- methylhex-4-enoate (0.826 g, 3.73 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.357 g (crude).
LCMS (ESI+, m/z): 462.4 (M+H)+ and 484.4 (M+Na)+.
Step 4: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4-methylphenoxy)- -methylhex-4-enoic acid (Compound 8n):
Figure imgf000082_0003
The title compound was synthesized from methyl (E)-methyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)-4-methylphenoxy)-4-methylhex-4-enoate (0.35 g, 0.76 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.098 g (28.0%).
*H NMR (400 MHz, DMSO-d^90°C): δ 7.72-7.70 (m, 3H), 7.44 (d, J = 8.4 Hz, 2H), 7.03 (d, J = 8.0 Hz, 1H), 6.96-6.93 (m, 2H), 6.88 (d, J = 8.4 Hz, 1H), 6.58-6.57 (m, 1H), 5.45 (brs, 1H), 4.52 (brs, 4H), 2.87 (s, 3H), 2.25 (s, 3H), 2.32-2.25 (m, 4H), 1.66 (s, 3H).
LCMS (API+, m/z): 448.4 (M+H)+ and 470.1(M+Na)+.
HPLC: 94.50% (210 nm).
Example 80: Synthesis of 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2- methylhexanoic acid (Compound 8o):
Figure imgf000083_0001
Reagents and Conditions: a) 1,4-Dibromobutane, NaH, THF, RT, 16 h; b) HBr (48% in H20), 110°C, 32 h; c) TMSC1, MeOH, RT, 24 h. Synthetic Scheme-2:
Figure imgf000084_0001
Reagents and Conditions: a) Methyl 6-bromo-2-methylhexanoate, K2C03, DMF, 60°C; c) LiOH.H20, THF, EtOH, H20, RT.
Step-1: Synthesis of diethyl 2-(4-bromobutyl)-2-methylmalonate (Compound 8o-i):
Figure imgf000084_0002
In a 100 mL round bottom flask, a suspension of NaH (60% dispersion, 0.690 g, 17.25 mmol) in anhydrous THF (15 mL) was treated with a solution of diethyl 2-methylmalonate (3.0 g, 17.24 mmol) dropwise at 0°C. The resulting reaction mixture was stirred for 15 min at RT and treated with, 1,4-dibromobutane (13.6 g, 63.79 mmol) under nitrogen atmosphere. The reaction mixture was stirred for 16 h at RT. Upon completion of reaction (TLC), the reaction mixture was quenched with 1 N NaOH (20 mL) and extracted with EtOAc (3 x 50 mL). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elutions, 0- 10% EtOAc in hexanes) to get the title compound. Yield: 2.61 g (49.1%).
1H NMR (300 MHz, COCU): δ 4.09 (q, J = 6.9 Hz, 4H), 3.51 (t, J
(m, 4H), 1.31- 1.25 (m, 2H), 1.29 (s, 3H), 1.14 (t, J = 7.2 Hz, 6H) Step 2: Synthesis of 6-bromo-2-methylhexanoic acid (Compound 8o-ii):
Figure imgf000085_0001
In a 100 mL round bottom flask, a solution of diethyl 2-(4-bromobutyl)-2- methylmalonate (2.5 g, 8.11 mmol) was treated with 48% HBr in H20 (25 mL) at RT. The resulting reaction mixture was stirred at 110°C for 7 h, later at RT for 15 h and again stirred atl 10°C for 9 h. Upon completion of reaction (TLC), the reaction mixture was washed with 15% NaOH and extracted with 5% MeOH in CHC13 (3 x 100 mL). The organic extracts were washed with brine, dried over anhydrous Na2S04 and solvent was removed under reduced pressure to afford the title compound (1.6 g, crude) which was used in the next step without further purification.
Step 3: Synthesis of methyl 6-bromo-2-methylhexanoate (Compound 8o-iii):
Figure imgf000085_0002
In a 50 mL round bottom flask, a stirred solution of hept-6-ynoic acid (1.5 g, 11.90 mmol) in MeOH (30 mL) was treated with TMSC1 (0.5 mL, catalytic amount) at RT under nitrogen atmosphere. The reaction mixture was stirred at 60°C for 12 h under nitrogen atmosphere. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure, diluted with ice cold water and extracted with EtOAc (3 x 20mL). The organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure to yield the title compound. Yield: 1.2 g.
1H NMR (300 MHz, CDC13): δ 3.67 (s, 3H), 3.39 (t, J = 6.6 Hz, 2H), 2.47-2.42 (m, 1H), 1.91-1.83 (m, 2H), 1.70-1.52 (m, 2H), 1.47-1.40 (m, 2H), 1.15 (d, J = 7.2 Hz, 3H).
Step-4: Synthesis of methyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2- meth lhexanoate (Compound 8o-iv):
Figure imgf000085_0003
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.4 g, 1.30 mmol) and methyl 6-bromo-2-methylhexanoate (0.37 g, 1.56 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.33 g (56.0%).
LCMS (ESI+. m z): 450.3 (M+H)+ and 472.4 (M+Na)+.
Step-5: Synthesis of6-(2-( ( 4-(furan-2-yl )-N-methylbenzamido )methyl )phenoxy )-2- meth lhexanoic acid (Compound 8o):
Figure imgf000086_0001
The title compound was synthesized from methyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-2-methylhexanoate (0.3 g, 0.66 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.188 g (64.8%).
1H NMR (400 MHz, DMSO-dg. 90°C): δ 11.70 (brs, 1H), 7.73-7.71 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.25-7.19 (m, 2H), 7.0-6.94 (m, 3H), 6.60-6.58 (m, 1H), 4.59 (s, 2H), 3.94 (t, / = 6.4 Hz, 2H), 2.91 (s, 3H), 2.33-2.31 (m, 1H), 1.72- 1.69 (m, 3H), 1.41 (brs, 3H), 1.06 (d, J = 6.8 Hz, 3H).
LCMS (ESI+. m z): 436.2 (M+H)+ and 458.1(M+Na)+.
HPLC: 95.0% (210 nm).
Example 8P: Synthesis of 3-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) meth l)phenyl)propanoic acid (Compound 8p):
Figure imgf000086_0002
Synthetic Scheme- 1 :
Figure imgf000087_0001
Reagents and conditions: a) Methyl acrylate, Pd(OAc)2, PPh3' Et3N, DMF, 100°C; b) NaBH4, NiCl2.6H20, MeOH, RT, 3 h; c) CBr4, PPh3, THF, RT, 3 h.
S nthetic Scheme-2:
Figure imgf000087_0002
Figure imgf000087_0003
Reagents and conditions: a) Methyl 3-(3-(bromomethyl)phenyl)propanoate, K2C03, DMF, 80°C, 3 h; b) LiOH.H20, THF, EtOH, H20, RT, 12 h.
Step-1: Synthesis of methyl (E)-3-(3-formylphenyl)acrylate (Compound 8p-i):
Figure imgf000087_0004
In a 100 mL reselable reaction tube, a degassed solution of 3-bromobenzaldehyde (2.0 g, 10.81 mmoL) in DMF (20 mL) was treated with Pd(OAc)2 (0.121g, 0.54 mmol), PPh3 (0.565 g, 2.16 mmol) and Et3N (2.19 mL, 16.21 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was stirred for 10 min and treated with methyl acrylate (1.2 g, 14.05 mmol) under nitrogen atmosphere. The reaction mixture was stirred for 12 h at 100°C. Upon completion of reaction (TLC), the reaction mixture was poured into ice cold water and extracted with EtOAc (2x 100 mL). The combined organic extract was dried over anhydrous Na2S04. The solvent was removed under reduced pressure to get the crude residue. The residue obtained was purified by silica gel column chromatography (elution, 20% EtOAc in hexanes) to afford the title compound. Yield: 2.01 g (87.0%).
1H NMR (300 MHz, DMSO-dfi): δ 10.02 (s, 1H), 8.24 (s, 1H), 8.05 (d, J = 6.0 Hz, 1H), 7.92 (d, J = 7.5 Hz, 1H), 7.74 (d, J = 15.9 Hz, 1H), 7.66-7.61 (m, 1H), 6.76 (d, J = 16.2 Hz, 1H), 3.72 (s, 3H).
Step-2: Synthesis of methyl 3-(3-(hydroxymethyl)phenyl)propanoate (Compound 8p-ii):
Figure imgf000088_0001
In a 100 mL round bottom flask, a solution of methyl (E)-3-(3-formylphenyl)acrylate (1.0 g, 5.25 mmol) in MeOH (50 mL) was treated with NiCl2.6H20 (1.24 g, 5.25 mmol) and NaBH4 (0.596 g, 15.77 mmol) at RT. The reaction mixture was stirred for 3 h at RT. Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water and extracted with EtOAc (2 x 100 mL). The organic extract was separated and dried over anhydrous Na2S04. The organic solvent was removed under reduced pressure to get the residue. The residue obtained was purified by column chromatography (elution, 30% EtOAc in hexanes) to afford the title compound. Yield: 1.0 g (99.0%).
1H NMR (300 MHz, CDC13): δ 7.31-7.08 (m, 4H), 4.95 (brs, 1H), 4.67 (s, 2H), 3.67 (s, 3H), 2.95 (t, J = 8.0 Hz, 2H), 2.63 (t, J = 1.6 Hz, 2H),
Step-3: Synthesis of methyl 3-(3-(bromomethyl)phenyl)propanoate (Compound 8p-iii):
The title compound was synthesized from methyl 3-(3- (hydroxymethyl)phenyl)propanoate (0.2 g, 1.02 mmol) and CBr4 (0.682 g, 2.06 mmol) following the experimental procedure described in step-5 of Example 8A. Yield: 0.111 g (43.0%).
1H NMR (400 MHz, CDCK): δ 7.27-7.23 (m, 3H), 7.14 (d, J = 7.2 Hz, 1H), 4.47 (s, 2H), 3.67 (s, 3H), 2.95 (t, J = 8.0 Hz, 2H), 2.63 (t, J = 7.6 Hz, 2H).
LCSM (ESI+, m/z): 257.1 (M+H)+. Step-4: Synthesis of methyl 3-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl) henoxy)methyl)phenyl)propanoate (Compound 8p-iv):
Figure imgf000089_0001
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) and methyl 3-(3-(bromomethyl)phenyl)propanoate (0.46 g, 4.86 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.513 g (65.0%).
LCMS (ESI+, m/z): 484.2 (M+H)+ and 506.2 (M+Na)+.
Step-5: Synthesis of3-(3-( (2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) meth l )pheny I propanoic acid (Compound 8p):
Figure imgf000089_0002
The title compound was synthesized methyl 3-(3-((2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)methyl)phenyl)propanoate (0.4 g, 0.83 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.35 g (90.0%). 1H NMR (300 MHz, DMSO-d6, 60°C): δ 11.95 (brs, 1H), 7.73-7.62 (m, 3H), 7.41 (d, J = 8.1 Hz, 2H), 7.27-7.13 (m, 6H), 7.07 (d, J = 7.8 Hz, 1H), 6.99-6,95 (m, 2H), 6.58-6.57 (m, 1H), 5.07 (brs, 2H), 4.59 (brs, 2H), 2.87 (s, 3H), 2.81 (t, J = 7.5 Hz, 2H), 2.49 (t, J = 7.5 Hz, 2H). LCMS (ESI+, m/z): 470.0 (M+H)+ .
HPLC: 95.33% (210 nm). Example 80: Synthesis of 2-(3-((2-((4-(furan-2-yl)-N- meth lbenzamido)methyl)phenoxy) methyl) phenyl)acetic acid (Compound 8q)
Figure imgf000090_0001
Synthetic Scheme- 1 :
Figure imgf000090_0002
Reagents and conditions: a) NBS, benzoylperoxide, CC14, 80°C, 12 h.
Synthetic Scheme-2:
Figure imgf000090_0003
Reagents and conditions: a) Ethyl 2-(3-(bromomethyl)phenyl)acetate, K2C03, DMF, 80°C, 3 h; b) LiOH.H20, THF, EtOH, H20, RT, 12 h.
Ste -1: Synthesis of ethyl 2-(3-(bromomethyl)phenyl)acetate (Compound 8q-i):
Figure imgf000090_0004
In a 100 mL round bottom flask, a solution of ethyl 2-(m-tolyl)acetate (2.0 g, 11.23 mmol) in CC14 (12 mL) was treated with N-bromosuccinimide (2.16 g, 12.35 mmol) and catalytic benzoyl peroxide (0.003 g) under nitrogen atmosphere. The resulting reaction mixture was stirred for 12 h at 80°C. Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water and extracted with EtOAc (2 x 100 mL). The organic extract was separated and dried over anhydrous Na2S04. The solvent was removed under reduced pressure to get the crude residue. The residue obtained was purified by silica gel column chromatography (gradient elutions, 5- 10% EtOAc in hexanes) to afford the title compound. Yield: 1.1 g (40.2%).
1H NMR (300 MHz, CDC : δ 7.32-7.25 (m, 4H), 4.48 (s, 2H), 4.15 (q, J = 6.9 Hz, 2H), 3.61
(s, 2H), 1.26 (t, J = 7.5 Hz, 3H).
LCMS (ESI+. m/z : 257.0, 259.0 (M+H)+.
Step-2: Synthesis of ethyl 2-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) meth l )pheny I )acetate (Compound 8q-ii):
Figure imgf000091_0001
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) and ethyl 3-(3-(bromomethyl)phenyl)propanoate (0.46 g, 4.86 mmol) following the experimental procedure described in step-9 of example- 1. Yield: 0.513 g (65.0%).
LCMS (ESI+, m/z): 484.2 (M+H)+ and 506.2 (M+Na)+.
Step-3: Synthesis of2-(3-((2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) meth l )pheny I )acetic acid (Compound 8q):
Figure imgf000091_0002
The title compound was synthesized from ethyl 2-(3-((2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)methyl)phenyl)acetate (0.4 g, 0.92 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.14 g (33.4%). 1H NMR (400 MHz, DMSO-d6, 90°Q: δ 12.80 (brs, 1H), 7.73 (s, 1H), 7.70 (d, J = 8.0 Hz, 2H), 7.43 (d, J = 8.0 Hz, 2H), 7.33-7.22 (m, 6H), 7.10 (d, J = 8.0 Hz, 1H), 7.01-6.94 (m, 2H), 6.60 (brs, 1H), 5.12 (s, 2H), 4.63 (s, 2H), 3.56 (s, 2H), 2.90 (s, 3H).
LCMS (ESI+, m/z): 456.2 (M+H)+ and 478.3 (M+Na)+
HPLC: 96.23 % (210 nm).
Example 8R: Synthesis of 2-(3-((2-((4-(furan-2-yl)-N- meth lbenzamido)methyl)phenoxy) methyl) phenoxy)acetic acid (Compound 8r):
Figure imgf000092_0001
S nthetic Scheme- 1 :
Figure imgf000092_0002
Figure imgf000092_0003
Reagents and conditions: a) Ethyl chloroacetate, K2C03, DMF, 60°C, 4 h; b) NaBH4, MeOH, RT, 1 h; c) CBr4, PPh3, THF, RT, 12 h.
S nthetic Scheme-2:
Figure imgf000093_0001
Figure imgf000093_0002
Reagents and conditions: a) Ethyl 2-(3-(bromomethyl)phenoxy)acetate, K2C03, DMF,
60°C, 4 h; b) LiOH.H20, THF, EtOH, H20, 70°C, 2 h.
Step-1: Synthesis of ethyl 2-(3-formylphenoxy)acetate (Compound 8r-i):
Figure imgf000093_0003
The title compound was synthesized from 3-hydroxybenzaldehyde (2.0 g, 16.39 mmol) and ethyl chloroacetate (2.00 g, 16.39 mmol) following the experimental procedure described in step-9 of example- 1. Yield: 0.850 g (27.9%).
1H NMR (400 MHz, DMSO-dg): δ 9.95 (s, 1H), 7.53-7.52 (m, 2H), 7.39 (d, J = 2.4 Hz, 1H), 7.30-7.25 (m, 1H), 4.88 (s, 2H), 4.15 (q, J = 7.2 Hz, 2H), 1.19 (t, J = 7.2 Hz, 3H).
LCMS (ESI+. m/z): 209.3 (M+H)+ .
Step-2: Synthesis of methyl 2-(3-(hydroxymethyl)phenoxy)acetate ( Compound Hr-ii):
Figure imgf000093_0004
In a 100 mL round bottom flask, a solution of ethyl 2-(3-formylphenoxy)acetate (0.85 g, 4.08 mL) in MeOH (5 mL) was treated with NaBH4 (0.185 g, 4.89 mmol) in portions at 0°C. The reaction mixture was stirred for 1 h at RT. Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water (10 mL) and extracted with EtOAc (2 x 100 mL). The combined organic extract was washed with brine, and dried over anhydrous Na2S04. The solvent was removed under reduced pressure and residue obtained was purified by column silica gel (elution, 80% EtOAc in hexanes) to afford the title compound. Yield: 0.3 g (35.0%).
1H NMR (300 MHz, DMSO-dfi): δ 7.23-7.18 (m, 1H), 6.90-6.85 (m, 2H), 6.77-6.73 (m, 1H), 5.17 (t, J = 5.7 Hz, 1H), 4.75 (s, 2H), 4.43 (d, J = 6.0 Hz, 2H), 3.67 (s, 3H).
Step-3: Synthesis of methyl 2-(3-(bromomethyl)phenoxy)acetate (Compound 8r-iii):
Figure imgf000094_0001
The title compound was synthesized from methyl 2-(3- (hydroxymethyl)phenoxy)acetate (0.85 g, 3.79 mmol) and CBr4 (3.8 g, 11.38 mmol) following the experimental procedure described in step-5 of Example 8A. Yield: 0.446 g (45.4%).
1H NMR (300 MHz, DMSO-dg): δ 7.53-7.52 (m, 2H), 7.39 (d, J = 2.4 Hz, 1H), 7.30-7.25 (m, 1H), 4.78 (s, 2H), 4.64 (s, 2H), 3.68 (s, 3H).
LCMS (ESI+. m/z): 259.0, 261.0 (M+H)+ .
Step-4: Synthesis of methyl 2-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl)
henoxy)methyl)phenoxy)acetate {Compound 8r-iv):
Figure imgf000094_0002
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) and methyl 2-(3-(bromomethyl)phenoxy)acetate (0.873 g, 3.96 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.310 g (50.4%).
LCMS (ESI+. m z): 486.3 (M+H)+ . Step-5: Synthesis of2-(3-((2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)methyl) henoxy)acetic acid (Compound 8r):
Figure imgf000095_0001
The title compound was synthesized from methyl 2-(3-((2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)methyl)phenoxy)acetate (0.3 g, 0.64 mmol) following the experimental procedure described in step-10 of Example 8A. Yield: 0.110 g (32.2%).
lU NMR (400 MHz, DMSO-dg, 60°C): δ 7.75-7.70 (m, 3H), 7.45-7.42 (m, 2H), 7.28-7.21 (m, 3H), 7.09-7.07 (m, 1H), 7.01-6.98 (m, 4H), 6.85 (d, / = 8.4 Hz, 1H), 6.60 (s, 1H), 5.10 (s, 2H), 4.62 (s, 4H), 2.90 (s, 3H),
LCMS (ESI+, m z): 471.7 (M+H)+.
HPLC: 97.04 % (210 nm).
Example 8S: Synthesis of 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phi
2 2-dimethylhexanoic acid (Compound 8s):
Figure imgf000095_0002
S nthetic Scheme- 1:
Figure imgf000095_0003
Reagents and conditions: a) n-BuLi, diisopropyl amine, THF; 1,4-Dibromobutane, -78°C to RT, 2 h. Synthetic Scheme-2:
Figure imgf000096_0001
Reagents and conditions: a) Ethyl 6-bromo-2, 2-dimethylhexanoate, K2C03, DMF, 70°C, 12 h; b) LiOH.H20, THF, EtOH, H20, RT, 12 h.
Synthesis of ethyl 6-bromo-2,2-dimethylhexanoate (Compound 8s-i)
Figure imgf000096_0002
In a 100 mL round bottom flask, a solution of diisopropyl amine (1.43 mL, 14.13 mmol) in anhydrous THF was treated with 2 M solution of n-BuLi in hexane (6.8 mL, 14.3 mmol) at 0°C under nitrogen atmosphere. The resulting reaction mixture was stirred for 30 min at 0°C. Ethyl isobutyrate (1.37 mL, 11.80 mmol) was added to the above reaction mixture at -78°C. The resulting reaction mixture was stirred for 1 h at -78°C. 1,4- Dibromobutane (1.05 mL, 9.44 mmol) was added to the reaction mixture at -78°C. The reaction mixture was stirred for 2 h at RT. Upon completion of reaction (TLC), the reaction mixture was quenched with aqueous NH4CI (50 mL) and extracted with EtOAc (3 x 50 mL). The organic extract was dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (gradient elution, 0-5% EtOAc in hexanes) to get the title compound. Yield: 0.96 g (32.5%).
1H NMR (300 MHz, COCh): δ 4.12 (q, J = 7.2 Hz, 2H), 3.39 (t, J = 6.9 Hz, 2H), 1.91- 1.78 (m, 2H), 1.55- 1.50 (m, 2H), 1.42-1.33 (m, 2H), 1.25 (t, J = 7.2 Hz, 3H), 1.65 (s, 6H). Step-2: Synthesis of ethyl 6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2,2- dimeth lhexanoate ( Compound 8s-ii):
Figure imgf000097_0001
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) and ethyl 6-bromo-2,2-dimethylhexanoate (0.490 g, 1.95 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.57 g (73.4%).
LCMS (ESI+, m/z): 477.8 (M+H)+ and 499.7 (M+Na)+.
Step-3: Synthesis of6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-2,2- dimeth lhexanoic acid (Compound 8s):
Figure imgf000097_0002
The title compound was synthesized from ethyl 6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-2,2-dimethylhexanoate (0.5 g, 1.04 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.31 g, (66.0%).
1H NMR (400 MHz, DMSO-dfi, 90°C): δ 7.73-7.72 (m, 3H), 7.47 (d, J = 8.0 Hz, 2H), 7.26- 7.19 (m, 2H), 7.07-6.96 (m, 3H), 6.60 (s, 1H), 4.59 (s, 2H), 3.99 (t, J = 6.0 Hz, 2H), 2.91 (s, 3H), 1.68-1.67 (m, 2H), 1.58-1.49 (m, 2H), 1.37 (brs, 2H), 1.08 (s, 6H).
LCMS (ESI+, m/z): 449.8 (M+H)+ and 471.8 (M+Na)+.
HPLC: 98.35% (210 nm). Example 8T: Synthesis of 2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)
phenoxy)propyl) cyclopropane-l-carboxylic acid {Compound 8t):
Figure imgf000098_0001
Synthetic Scheme- 1 :
Figure imgf000098_0002
Reagents and conditions: a) Ethyl diazoacetate, C11SO4, cyclohexane, 80°C, 18 h.
S nthesis of ethyl 2-(3-bromopropyl)cyclopropane-l-carboxylate (Compound 8t-i):
Figure imgf000098_0003
In a 100 mL round bottom flask, a solution of 5-bromopent-l-ene (5.0 g, 33.55 mmol) in cyclohexane (10 mL) was treated with CuS04 (0.53 g, 3.35 mmol) at RT. The reaction mixture was heated to 80°C and treated with a solution of ethyl diazoacetate (1.912 g, 16.78 mmol) in cyclohexane (10 mL) at under nitrogen atmosphere. The reaction mixture was stirred at same temperature for 18 h. Upon completion of reaction (TLC), the reaction mixture was cooled to RT and filtered through a silica gel (60-120 mesh) pad and washed with 30% EtOAc in hexanes. The combined filtrate was concentrated under reduced pressure and residue obtained was further purified by silica gel column chromatography (gradient elution, 0-10% EtOAc in hexanes) to afford the title compound. Yield: 6.7 g (85.8%).
1H NMR (400 MHz, CDCK): δ 4.11 (q, J = 7.2 Hz, 2H), 3.44 (t, J = 6.3 Hz, 2H), 2.02-1.92 (m, 2H), 1.54-1.30 (m, 4H), 1.25 (t, J = 6.6 Hz, 3H), 1.20-1.14 (m, 1H), 0.76-0.70 (m, 1H). Step-2: Synthesis of ethyl 2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) ropyl)cyclopropane-l-carboxylate (Compound 8t-ii):
Figure imgf000099_0001
The title compound was synthesized N-(2-hydroxybenzyl)-N,2-dimethylbenzofuran- 5-carboxamide (0.30 g, 1.01 mmol) and ethyl 2-(3-bromopropyl)cyclopropane-l-carboxylate (0.275 g, 2.03 mmol) following the experimental procedure described in step-3 of Example 8CC. Yield: 0.23 g (51.0%).
LCMS (ESI+, m/z): 462.2 (M+H)+ and 484.1 (M+Na)+-
Step-3: Synthesis of2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) ropyl)cyclopropane-l -carboxylic acid (Compound 8t):
Figure imgf000099_0002
The title compound was synthesized from ethyl 2-(3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl)cyclopropane-l-carboxylate (0.2 g, 0.21 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.085 g, (45.5%).
1H NMR (400 MHz, DMSO-dfi): δ 11.80 (brs, IH), 7.75-7.72 (m, 3H), 7.47 (d, J = 8.0 Hz, 2H), 7.28-7.24 (m, IH), 7.20 (d, J = 6.8 Hz, IH), 7.00-6.95 (m, 3H), 6.60 (brs, IH), 4.58 (brs, 2H), 4.00 (brs, 2H), 2.89 (s, 3H), 1.77 (m, 2H), 1.59 (m, IH), 1.40 (brs, IH), 1.26 (brs, 2H), 0.96-0.95 (m, IH), 0.76-0.55 (m, IH).
LCMS (ESI+. m/z : 434.2 (M+H)+.
HPLC: % (210 nm). Example 8U & 8V-: (lR*,2S*)-2-(3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl) cyclopropane- 1-carboxylic acid {Compound 8u), and (lR*,2R*)-2-(3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl) cyclopropane- 1-carboxylic acid {Compound
Figure imgf000100_0001
8u 8v
The title compound was obtained from separation of diastereomers from 2-(3-(2-((4- (furan-2-yl)-N-methylbenzamido)methyl)phenoxy)propyl)cyclopropane- 1 -carboxylic acid (1.4 g) by preparative HPLC (Column: Gemini Luna C18 (250 mm x 21.5 mm x 5μιη); Flow: 20 mL/min; Mobile phase: 10 mM NH4OAc in H20 (A)/ MeCN (B); T/ B: 0/30, 2/40, 3/80) to afford ((lR*,25*)-2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)
phenoxy)propyl)cyclopropane- 1-carboxylic acid and (0.7 g) and (lR*,2R*)-2-(3-(2-((4- (furan-2-yl)-N-methyl benzamido)methyl)phenoxy)propyl)cyclopropane- 1-carboxylic acid (0.3 g).
Compound 8u
1H NMR (400 MHz, DMSO-dfi 90°O: δ 11.60 (brs, 1H), 7.74-7.72 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.28-7.24 (m, 1H), 7.20 (d, J = 7.2 Hz, 1H), 7.00-6.95 (m, 3H), 6.60 (brs, 1H), 4.59 (brs, 2H), 4.02 (t, J = 6.4 Hz, 2H), 2.90 (s, 3H), 1.80-1.77 (m, 2H), 1.44-1.40 (m, 2H), 1.32- 1.25 (m, 2H), 0.99-0.95 (m, 1H), 0.69-0.64 (m, 1H).
LCMS (ESI+. m/z): 434.2 (M+H)+.
HPLC: 96.44% (210 nm). (Rt: 5.29 min).
Compound 8v
1H NMR (400 MHz, DMSO-dfi 90°O: δ 11.65 (brs, 1H), 7.74-7.72 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.28-7.24 (m, 1H), 7.20 (d, J = 7.2 Hz, 1H), 7.00-6.95 (m, 3H), 6.60 (brs, 1H), 4.60 (brs, 2H), 4.03-3.99 (m, 2H), 2.92 (s, 3H), 1.80-1.75 (m, 2H), 1.68- 1.60 (m, 3H), 1.28-1.22 (m, 1H), 0.99-0.94 (m, 1H), 0.75-0.71 (m, 1H). LCMS (ESI+. m/z): 434.2 (M+H)+.
HPLC: 94.07% (210 nm). (RT: 5.38 min).
Examples 8W and 8X: (lR.2S)-2-(3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl) cyclopropane- 1-carboxylic acid (Compound 8w), and (15,2/?)-2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)propyl)
Figure imgf000101_0001
8w
The title compound was obtained separation of enantiomers of 2-(3-(2-((4-(furan-2- yl)-N-methylbenzamido)methyl)phenoxy)propyl)cyclopropane- 1-carboxylic acid (0.65g ) by chiral preparative HPLC (Column: Phenomenex Lux Amylose-2 (250 mm x 21.20 mm), 5.0μ; Flow: 20.0 mL/min; Isocratic: 77:23; mobile phase: Hexane (A) /0.1% TFA in EtOH (B)) to afford (lR,2lS')-2-(3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)propyl) cyclopropane-l-carboxylic acid (0.088 g, >99 % ee) and (lS,2R)-2-(3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl)cyclopropane- 1-carboxylic acid (0.17 g, 98 % ee). *Note: absolute configuration of compounds 8w and 8z is arbitrary
Compound 8w
1H NMR (400 MHz, DMSO-dfi 90°C): δ 7.74-7.72 (m, 3H), 7.47 (d, J = 8.4 Hz, 2H), 7.28- 7.24 (m, 1H), 7.20 (d, J = 7.2 Hz, 1H), 7.00-6.95 (m, 3H), 6.60 (m, 1H), 4.60 (brs, 2H), 4.03 (t, J = 6.4 Hz, 2H), 2.90 (s, 3H), 1.82-1.79 (m, 2H), 1.42-1.40 (m, 2H), 1.32-1.26 (m, 2H), 1.00-0.99 (m, 1H), 0.69-0.65 (m, 1H).
LCMS (ESI+. m z): 434.3 (M+H)+.
HPLC: 98.72% (210 nm). Compound 8x
1H NMR (400 MHz, DMSO-dg_90°C): δ 7.72-7.70 (m, 3H), 7.45 (d, J = 8.4 Hz, 2H), 7.27- 7.23 (m, 1H), 7.19 (d, J = 7.2 Hz, 1H), 6.99-6.93 (m, 3H), 6.58-6.57 (m, 1H), 4.60 (brs, 2H), 4.03 (t, J = 6.4 Hz, 2H), 2.89 (s, 3H), 1.80-1.75 (m, 2H), 1.42- 1.40 (m, 2H), 1.32-1.26 (m, 2H), 0.98-0.94 (m, 1H), 0.67-0.63 (m, 1H).
LCMS (ESI+. m/z): 434.3 (M+H)+.
HPLC: 97.61% (210 nm).
Example 8Y: Synthesis of 2-((3-(2-((4-(furan-2-yl)-N- meth lbenzamido)methyl)phenoxy) propyl)thio)acetic acid (Compound 8y):
Figure imgf000102_0001
Reagents and conditions: a) 1,3-Dibromopropane, K2C03, DMF, 110°C, 3 days; b) Ethyl 2- mercaptoacetate, K2C03, acetone, reflux, 3 h; c) b) LiOH.H20, THF, EtOH, H20, RT, 70°C, 2 h. Step-1 : Synthesis ofN-(2-( 3-bromopropoxy )benzyl)-4-(furan-2-yl)-N-methylbenzamide
Compound 8y-i):
Figure imgf000103_0001
In a 100 mL round bottom flask, a solution of 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.5 g, 1.62 mmol) in DMF (50 mL) was treated with K2C03 (0.337 g, 2.44 mmol) and 1,3-dibromopropane (0.651 g, 3.24 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was stirred at 110°C for 3 days. The reaction mixture was cooled to RT, filtered and washed with ethyl acetate. The combined filtrate was concentrated under reduced pressure and residue obtained was diluted with cold water (50 mL), before extracting with ethyl acetate (200 mL). The organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 20% EtOAc-hexanes) to afford the title compound. Yield: 0.351 g (53.2%).
LCMS (ESI+. m/z): 427.7, 429.7 (M+H)+.
Step-2: Synthesis of ethyl 2-((3-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy) ropyl)thio)acetate (Compound 8y-ii):
Figure imgf000103_0002
In a 50 mL round bottom flask, a solution of N-(2-(3-bromopropoxy)benzyl)-4- (furan-2-yl)-N-methylbenzamide (0.3 g, 0.70 mmol) in acetone (10 mL) was treated with K2C03 (0.289 g, 2.10 mmol) and ethyl 2-mercaptoacetate (0.14 g, 1.05 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was stirred at reflux temperature for 3 h. The reaction mixture was cooled to RT, filtered and washed with ethyl acetate. The combined filtrate was concentrated under reduced pressure and residue obtained was diluted with cold water (50 mL), before extracting with ethyl acetate (100 mL). The organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 50% EtOAc-hexanes) to afford the title compound. Yield: 0.291 g (89.1%).
LCMS (ESI+, m/z): 467.8 (M+H)+.
Step-3: Synthesis of2-((3-(2-(( 4-(furan-2-yl)-N-methylbenzamido )methyl)phenoxy) ropyl)thio)acetic acid (Compound 8y):
Figure imgf000104_0001
The title compound was synthesized from ethyl 2-((3-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)propyl)thio)acetate (0.2 g, 0.428 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.16 g (85.1%).
1H NMR (400 MHz, DMSO-d^60°C): δ 12.30 (brs, IH), 7.75-7.73 (m, 3H), 7.48 (d, J = 8.0 Hz, 2H), 7.29-7.25 (m, IH), 7.21-7.19 (m, IH), 7.02-6.96 (m, 3H), 6.61 (brs, IH), 4.60 (brs, 2H), 4.06 (brs, 2H), 3.23 (s, 2H), 2.89 (s, 3H), 2.73 (brs, 2H), 1.99 (brs, 2H).
LCMS (ESI+, m z): 440.4 (M+H)+ and 462.1 (M+Na)+.
HPLC: 93.66% (210 nm).
Example 8Z: Synthesis of 6-(2-((N,2-dimethylbenzofuran-5- carboxamido)methyl)phenoxy)-2,2-dimethylhexanoic acid (Compound 8z):
Figure imgf000104_0002
Synthetic Scheme:
Figure imgf000105_0001
Reagents and Conditions: a) 2-Methylbenzofuran-5-carboxylic acid, EDCI.HCl, HOBt, Et3N, DMF, RT; b) Ethyl 6-bromo-2,2-dimethylhexanoate, K2C03> DMF, RT; c) LiOH.H20, THF, EtOH, H20, RT.
Step-1: Synthesis ofN-(2-hydroxybenzyl)-N,2-dimethylbenzofuran-5-carboxamide
( Compound 8z-i):
Figure imgf000105_0002
The title compound was synthesized from 2-((methylamino)methyl)phenol (0.389 g, 2.84 mmol) and 2-methylbenzofuran-5-carboxylic acid (0.5 g, 2.84 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 0.591 g (70.6 %)
1H NMR (300 MHz, DMSO-dfi : 9.70 (s, 1H), 7.62-7.50 (m, 2H), 7.27-7.09 (m, 3H), 6.80 (t, J = 6.9 Hz, 2H), 6.60 (br, 1H), 4.59-4.40 (m, 2H), 2.87 (s, 3H), 2.43 (s, 3H).
LCMS (ESI+. m/z : 295.8 (M+H)+
Step-2: Synthesis of ethyl 6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl) phenoxy) - -dimethylhexanoate (Compound 8z-ii):
Figure imgf000105_0003
The title compound was synthesized from N-(2-hydroxybenzyl)-N,2- dimethylbenzofuran-5-carboxamide (0.2 g, 0.68 mmol) and ethyl 6-bromo-2,2- dimethylhexanoate (0.169 g, 0.68 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.301 g (96 %)
LCMS (ESI+. m/z): 466.3 (M+H)+
Step-3: Synthesis of6-(2-((N,2-dimethylbenzofuran-5-carboxamido)methyl)phenoxy)-2, 2- dimethylhexanoic acid (Compound 8z):
Figure imgf000106_0001
The title compound was synthesized from ethyl 6-(2-((N,2-dimethylbenzofuran-5- carboxamido)methyl)phenoxy)-2,2-dimethylhexanoate (0.35 g, 0.75 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.211 (64.5 %)
1H NMR (400 MHz, DMSO-dfi, 90°C): 11.90 (br, 1H), 7.58 (s, 1H), 7.49 (d, J = 8.0 Hz, 1H), 7.28-7.23 (m, 2H), 7.19 (d, J = 6.8 Hz, 1H), 6.99-6.94 (m, 2H), 6.59 (s, 1H), 4.58 (br s, 2H), 3.96 (br s, 2H), 2.89 (s, 3H), 2.45 (s, 3H), 1.65 (br, 2H), 1.55-1.46 (m, 2H), 1.34 (br, 2H), 1.06 (s, 6H).
LCMS (ESI+, m z): 437.8 (M+H)+ and 459.8 (M+Na)+.
HPLC: 99.45 %. (210 nm).
Example 8AA: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)
(trifluoromethyl) phenoxy)-4-methylhex-4-enoic acid (Compound 8aa):
Figure imgf000106_0002
Synthetic Scheme:
Figure imgf000107_0001
Reagents and conditions: a) MeNH2.HCl, Et3N, NaBH4, MeOH, RT, 2 h; b) 4-(Furan-2- yl)benzoic acid, EDCI.HCl, HOBt, Et3N, DMF, RT, 3 h; c) Bis(pinacolato)diboron,
PdCl2(dppf).CH2Cl2, 1,4-dioxane, KOAc, 90°C, 12 h; d) NaB03.4H20, THF, H20, RT, 15 h; e) Methyl (E)-6-bromo-4-methylhex-4-enoate, K2C03, DMF, RT, 12 h; f) LiOH.H20, THF, MeOH, H20, RT, 1 h.
Step-1: Synthesis of 1 -(2-bmmo-5-(trifluoromethyl)phenyl)-N-methylmethanamine
(Compound 8aa-i):
Figure imgf000107_0002
The title compound was synthesized from 2-bromo-5-(trifluoromethyl)benzaldehyde (5.0 g, 19.76 mmol) and MeNH2.HCl (6.7 g, 98.91 mmol) following the experimental procedure described in step-6 of example- 1. Yield: 3.12 g (59.2%). 1H NMR (300 MHz, COCh): δ 7.68-7.65 (m, 2H), 7.39-7.36 (m, 1H), 3.87 (s, 2H),
3H).
LCMS (ESI+, m/z): 267.8, 270.0 (M+H)+ .
Step-2: Synthesis ofN-(2-bromo-5-(trifluoromethyl)benzyl)-4-(furan-2-yl)-N- methylbenzamide (Compound 8aa-ii):
Figure imgf000108_0001
The title compound was synthesized from l-(2-bromo-5-(trifluoromethyl)phenyl)-N- methylmethanamine (2.1 g, 7.86 mmol) and 4-(furan-2-yl)benzoic acid (1.46 g, 7.86 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 3.12 g (59.2%).
LCMS (ESI+. m/z : 438.0. 440.1 (M+H)+.
Step-3: Synthesis of4-(furan-2-yl)-N-methyl-N-(2-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- -5-(trifluoromethyl)benzyl)benzamide (Compound 8aa-iii):
Figure imgf000108_0002
In a 20 mL resealable reaction tube, N-(2-bromo-5-(trifluoromethyl)benzyl)-4-(furan- 2-yl)-N-methylbenzamide (0.25 g, 0.57 mmol) and bis(pinacolato)diboron (0.725 g, 2.85 mmol) were dissolved in degassed 1,4-dioxane (10 mL) at RT under nitrogen atmosphere. PdCl2(dppf).CH2Cl2 (0.093 g, 0.11 mmol) and KOAc (0.28 g, 2.85 mmol) were sequentially added to the above solution under nitrogen atmosphere. The resulting mixture was degassed by purging with argon gas for 15 min and reaction mixture was heated at 90°C for 12 h. Upon completion of the reaction (TLC), the reaction mixture was cooled to RT, diluted with cold water and extracted with ethyl acetate (3 x 50 mL). The combined organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure to get the title compound. Yield: 0.20 g (72.2%).
LCMS (ESI+. m/z): 486.3 (M+H)+.
Step-4: Synthesis of4-(furan-2-yl)-N-(2-hydroxy-5-(trifluoromethyl)benzyl)-N- methylbenzamide (Compound 8aa-iv):
Figure imgf000109_0001
In 100 mL round bottom flask, a solution of 4-(furan-2-yl)-N-methyl-N-(2-(4,4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)-5-(trifluoromethyl)benzyl)benzamide (1.5g, 3.09 mmol) in THF (15 mL) and H20 (15 mL) was treated with NaB03.4H20 (1.4 g, 9.27 mmol) at RT. The resulting reaction mixture was stirred at RT for 15 h. Upon completion of reaction (TLC), the reaction mixture was diluted with water (30 mL) and extracted with EtOAc (3x 50 mL). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solvent was removed under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 40% EtOAc in hexanes) to yield the title compound. Yield: 0.5 lg (43.9%).
1H NMR (300 MHz, CDC : δ 10.60 (s, 1H), 7.72 (d, J = 8.1 Hz, 2H), 7.55-7.50 (m, 4H), 7.42-7.41 (m, 1H), 7.06 (d, J = 8.7 Hz, 1H), 6.75 (d, J = 4.2 Hz, 1H), 6.50 (dd, J = 3.3, 1.8 Hz, 1H), 4.64 (s, 2H), 3.09 (s, 3H).
LCMS (ESI, m/z): 376.0 (M+H)+ .
Step-5: Synthesis of methyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4- (trifluoromethyl)phenoxy)-4-methylhex-4-enoate (Compound 8aa-v):
Figure imgf000109_0002
The title compound was synthesized from 4-(furan-2-yl)-N-(2-hydroxy-5- (trifluoromethyl)benzyl)-N-methylbenzamide (0.3 g, 0.80 mmol) and methyl (E)-6-bromo-4- methylhex-4-enoate (0.521 g, 2.40 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 0.25 g (60.7%).
LCMS (ESI, m/z): 516.3 (M+H)+ and 538.3 (M+Na)+.
Step-6: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)-4-(trifluoromethyl) phenoxy)-4-methylhex-4-enoic acid (Compound 8aa):
Figure imgf000110_0001
The title compound was synthesized from methyl (E)-6-(2-((4-(furan-2-yl)-N- methylbenzamido)methyl)-4-(trifluoromethyl)phenoxy)-4-methylhex-4-enoate (0.25 g, 0.48 mmol) following the experimental procedure described in step- 10 of Example 8 A. Yield: 0.14 g (57.6%).
1H NMR (300 MHz, DMSO-dfi, 60°C): δ 11.90 (brs, 1H), 7.74-7.71 (m, 3H), 7.61 (d, J = 6.9 Hz, 1H), 7.43-7.41 (m, 3H), 7.20 (d, J = 8.1 Hz, 1H), 6.98 (d, J = 3.3 Hz, 1H), 6.59-6.58 (m, 1H), 5.42 (brs, 1H), 4.46 (d, J = 5.4 Hz, 2H), 4.59 (brs, 2H), 2.72 (s, 3H), 2.31-2.25 (m, 4H), 1.69 (s, 3H).
LCMS (ESI+. m z): 502.3 (M+H)+
HPLC: 97.2 % (210 nm).
Example 8BB: Synthesis of (E)-6-(4-cyclopropyl-2-((4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)-4-methylhex-4-enoic acid (Compound 8bb):
Figure imgf000110_0002
Synthetic Scheme:
Figure imgf000111_0001
Reagents and conditions: a) MeNH2.HCl, Et3N, NaBH4, MeOH, RT, 2 h; b) 4-(Furan-2- yl)benzoic acid, EDCI.HCl, HOBt, Et3N, DMF, RT, 3 h; c) Methyl (E)-6-bromo-4- methylhex-4-enoate, K2C03, DMF, RT, 12 h; d) Cyclopropylboronic acid, Pd(OAc)2, PCy3, K3P04, toluene, H2O,100°C, 12 h; e) LiOH.H20, THF, MeOH, H20, RT, 1 h.
Step-1: Synthesis of4-bromo-2-((methylamino)methyl)phenol (Compound 8bb-i):
Figure imgf000111_0002
The title compound was synthesized from 5-bromo-2-hydroxybenzaldehyde (5.0 g, 24.87 mmol) and MeNH2.HCl (8.4 g, 124.37 mmol) following the experimental procedure described in step-6 of Example 8A. Yield: 3.99 (74.7%).
1H NMR (300 MHz, DMSO-dfi): δ 7.23-7.17 (m, 2H), 6.64 (d, J = 8.7 Hz, 1H), 5.26 (br, 2H),
3.72 (s, 2H), 2.24 (s, 3H).
LCMS (ESI+, m/z): 216.1, 218.1 (M+H)+. Step-2: Synthesis ofN-(5-bromo-2-hydroxybenzyl)-4-(furan-2-yl)-N-methylbenzamide
(Compound Hbb-d' ):
Figure imgf000112_0001
The title compound was synthesized from 4-bromo-2-((methylamino)methyl)phenol (2.2 g, 10.18 mmol) and 4-(furan-2-yl)benzoic acid (2.0 g, 10.18 mmol) following the experimental procedure described in step-8 of Example 8A. Yield: 2.2 g (56.1%).
1H NMR (400 MHz, CDC : δ 10.10 (s, 1H), 7.72 (d, J = 8.0 Hz, 2H), 7.52 (d, J = 8.4 Hz, 2H), 7.51 (s, 1H), 7.37-7.35 (m, 1H), 7.29-7.28 (m, 1H), 6.89 (d, J = 8.4 Hz, 1H), 6.76-6.75 (m, 1H), 6.51-6.50 (m, 1H), 4.57 (s, 2H), 3.09 (s, 3H).
LCMS (ESI+. m/z : 386.0, 388.0 (M+H)+.
Step-3: Synthesis of methyl (E)-6-(4-bromo-2-((4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)-4-methylhex-4-enoate (Compound 8bb-iii):
Figure imgf000112_0002
The title compound was synthesized from N-(5-bromo-2-hydroxybenzyl)-4-(furan-2- yl)-N-methylbenzamide (0.1 g, 2.59 mmol) and methyl (E)-6-bromo-4-methylhex-4-enoate (0.7 g, 3.36 mmol) following the experimental procedure described in step-9 of Example 8A. Yield: 1.0 g (73.5%).
LCMS (ESI+. m/z : 526.0, 527.9 (M+H)+.
I l l Step-4: Synthesis of methyl (E)-6-(4-cyclopropyl-2-((4-(furan-2-yl)-N-methylbenzamido) methyl)phenoxy)-4-methylhex-4-enoate (Compound 8bb-iv):
Figure imgf000113_0001
In a 100 mL resealable reaction tube, methyl (E)-6-(4-bromo-2-((4-(furan-2-yl)-N- methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.4 g, 0.76 mmol) and cyclopropylboronic acid (0.134 g, 1.52 mmol) were dissolved in degassed mixture of toluene (10 mL) and water (4 mL) at RT under nitrogen atmosphere. Pd(OAc)2 (0.034 g, 0.15 mmol), PCy3 (0.43 g, 0.15 mmol) and K3P04 (0.484 g, 2.28 mmol) were sequentially added to the above mixture under nitrogen atmosphere. The resulting mixture was degassed by purging argon gas for 15 min, and reaction mixture was heated to 110°C for 12 h. Upon completion of reaction (TLC), the reaction mixture was cooled to RT, diluted with cold water and extracted with EtOAc (3 x 30 mL). The combined organic extract was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure to get the title compound (0.3 g, 81.1%).
LCMS (ESI+, m/z): 488.4 (M+H)+ and 510.4 (M+Na)+
Step-5: Synthesis of (E)-6-(4-cyclopropyl-2-((4-(furan-2-yl)-N-methylbenzamido)methyl) henoxy)-4-methylhex-4-enoic acid (Compound 8bb):
Figure imgf000113_0002
The title compound was synthesized from methyl (E)-6-(4-cyclopropyl-2-((4-(furan- 2-yl)-N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoate (0.3 g, 0.62 mmol) following the experimental procedure described in step- 10 of Example 8A. Yield: 0.11 g (37.8%). 1H NMR (300 MHz. DMSO-ck 60°C): δ 7.73-7.70 (m, 3H), 7.43 (d, J = 8.4 Hz, 2H), 6.97- 6.85 (m, 4H), 6.58 (dd, J = 3.3, 1.8 Hz 1H), 5.38 (brs, 1H), 4.49 (brs, 4H), 2.85 (s, 3H), 2.30- 2.24 (m, 5H), 1.65 (s, 3H), 0.90-0.84 (m, 2H), 0.57-0.52 (m, 2H).
LCMS (ESI+, m/ : 496.1 (M+Na)+
HPLC: 98.5 % (210 nm).
Example 8CC: Synthesis of (E>6-(2-((4-(furan-2-yl)-N- meth lbenzamido)methyl)phenoxy)hex-2-enoic acid (Compound 8cc):
Figure imgf000114_0001
Reagents and conditions: a) (Ethoxycarbonylmethylene)triphenylphophorane, Mn02, DCM, 24 h; b) CBr4, PPh3, THF, RT, 12 h.
Synthetic Scheme-2:
Figure imgf000114_0002
Reagents and conditions: a) Ethyl (£ 6-bromohex-2-enoate, K2C03, DMF, 80°C; b) LiOH.H20, THF, H20, RT, 12h.
Figure imgf000115_0001
In a 500 mL round bottom flask, a solution of butane- 1,4-diol (9.0 g, 99.86 mmol) and (ethoxycarbonylmethylene)triphenylphophorane (83.40 g, 239.68 mmol) in DCM (90 mL) was treated with manganese dioxide (172.14 g, 1997.20 mmol) at RT. The resulting reaction mixture was stirred at RT for 24 h. Upon completion of reaction (TLC), the solid was filtered through a Celite® pad. The filtrate was washed with water and dried over anhydrous Na2S04. The solvent was removed under reduced pressure to get the title compound. Yield: 2.15 g
(13.6%).
1H NMR (400 MHz, COCh): δ 7.00-6.85 (m, 1H), 5.85 (d, J = 16.8 Hz, 1H), 4.18 (q, J = 7.2 Hz, 2H), 3.70-3.66 (m, 2H), 2.31 (q, J = 7.6 Hz, 2H), 1.76-1.63 (m, 2H), 1.39 (brs, 1H), 1.28 (t, J = 7.2 Hz, 3H).
LCMS (ESI+. m/z): 159.0 (M+H)+.
Ste -2: Synthesis of ethyl (E)-6-bromohex-2-enoate (Compound 8cc-ii) :
Figure imgf000115_0002
In a 100 mL round bottom flask, a solution of ethyl (E)-6-hydroxyhex-2-enoate (1.5 g, 9.40 mmol) in THF (10 mL) was treated with CBr4 (4.68 g, 14.13 mmol ) and PPh3 (3.70 g, 14.13 mmol) at 0°C. The resulting reaction mixture was stirred at RT for 12 h. Upon completion of reaction (TLC), the reaction mixture was quenched with ice cold water and extracted with EtOAc (2 x 200 mL). The organic extract was separated, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 15% EtOAc in hexanes) to get the title compound. 0.98 g (46.9%).
1H NMR (400 MHz, CDC : δ 6.95-6.85 (m, 1H), 5.87 (d, J = 15.6 Hz, 1H), 4.18 (q, J = 7.2 Hz, 2H), 3.42 (t, J = 6.8 Hz, 2H), 2.42-2.35 (m, 2H), 2.05-2.00 (m, 2H), 1.28 (t, J = 7.2 Hz, 3H).
LCMS (ESI+, m z): 221.1, 223.1 (M+H)+. Step-3: Synthesis of ethyl (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl) phenoxy)hex- 2-enoate Compound 8cc-ii):
Figure imgf000116_0001
In a 250 mL round bottom flask, a solution of 4-(furan-2-yl)-N-(2-hydroxybenzyl)-N- methylbenzamide (0.4 g, 1.30 mmol) in DMF (15 mL) was treated with K2C03 (0.539 g, 3.90 mmol) and ethyl (EJ-6-bromohex-2-enoate (0.57 g, 2.60 mmol) at RT under nitrogen atmosphere. The resulting reaction mixture was heated at 80°C with constant stirring for 5 h. The reaction mixture was cooled to RT, solid was filtered and washed with ethyl acetate. The combined filtrate was concentrated under reduced pressure and residue obtained was diluted with cold water (100 mL), before extracting with ethyl acetate (100 mL). The organic layer was washed with brine, dried over anhydrous Na2S04 and concentrated under reduced pressure. The residue obtained was purified by silica gel column chromatography (elution, 20% EtOAc in hexanes) to afford the title compound (0.258 g, 44.2%).
LCMS (ESI+, m/z): 447.8 (M+H)+.
Step-4: Synthesis of (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)hex-2- enoic acid Compound 8cc):
Figure imgf000116_0002
In a 100 mL round bottom flask, a stirred solution of ethyl (EJ-6-(2-((4-(furan-2-yl)- N-methylbenzamido)methyl)phenoxy)hex-2-enoate (0.25 g, 0.55 mmol) in THF (15 mL) and water (5 mL), was treated with lithium hydroxide monohydrate (0.234 g, 5.59 mmol) at RT. The reaction mixture was stirred at RT for 12 h. Upon completion of reaction (TLC), the reaction mixture was concentrated under reduced pressure. The residue obtained was washed with EtOAc, diluted with cold water and acidified with 1 N HC1. The aqueous layer was extracted with EtOAc (3 x 25 mL). The combined organic extract was washed with brine and dried over anhydrous Na2S04. The solution was concentrated under reduced pressure. The residue obtained was purified by silica gel preparative TLC (elution, 50% EtOAc in hexanes) to afford the title compound. Yield: 0.178 g (76.07%).
1H NMR (400 MHz, DMSO-dfi 60°C): δ 11.98 (brs, IH), 7.75 (s, IH), 7.74 (d, J = 8.4 Hz,
2H), 7.74 (d, J = 8.4 Hz, 2H), 7.26 (m, IH), 7.23-7.20 (m, IH), 6.99-6.96 (m, 3H), 6.89-6.84
(m, IH), 6.60 (brs, IH), 5.77 (d, J = 15.6 Hz, IH), 4.59 (br s, 2H), 4.00 (brs, 2H), 2.90 (s,
3H), 2.33 (brs, 2H), 1.86 (brs, 2H).
LCMS (ESI+, m z): 420.1(M+H)+ and 442.1(M+Na)+.
HPLC: 95.34% (210 nm).

Claims

A compound of Formula (I) :
Figure imgf000118_0001
(i);
or a pharmaceutically acceptable salt thereof,
wherein:
® Θ
Z is CH, N, or N"° ;
Ring A is optionally substituted phenylene when Z is CH, optionally substituted
® Θ pyridinylene when Z is N, or optionally substituted N-oxide pyridinylene when Z is ^ ;
Ar is optionally substituted 5 or 6-membered monocyclic arylene or heteroarylene, provided that when Ar is 5-membered heteroarylene, R 2 and -C(0)NR 3 - are oriented 1, 3 to each other on the ring, wherein position 1 is the point of attachment of Ar to the -C(0)NR -; or
Ar is optionally substituted 9- or 10-membered fused bicyclic heteroarylene;
R1 is -OR1A or-NR1AR1B;
R1A, R1B are each independently hydrogen or C1-C4-alkyl;
W is O, and L is -(CH2)n-, wherein n is an integer between 1 and 6, and one or more (CH2) is replaced with -CH2-CH(CH3)-, -CH(CH3)-CH2- -CH2-C(CH3)2- , -C(CH3)2-
CH2- , -HC=C(CH3)-, -(CH3)C=CH-
Figure imgf000118_0002
, -CH2-0-CH2- -CH2-S-CH2- -CH2- CH(F)-, -CH(F)-CH2- -CH2-CF2- -CF2-CH2-, -CH2-C(0)-, -C(0)-CH2-, optionally substituted arylene, optionally substituted arylene ether, or optionally substituted
heteroarylene; or
W is CH2, CH=CH, or C≡C, and L is -(CH2)n-, wherein n is an integer between 1 and 6, and one or more (CH2) is optionally replaced with -CH2-CH(CH )-, -CH(CH )-
CH2-, -CH2-C(CH3)2- , -C(CH3)2-CH2- , -HC=C(CH3)-, -(CH3)C=CH-,
Figure imgf000118_0003
-CH2-O-CH2-, -CH2-S-CH2-, -CH2-CH(F)-, -CH(F)-CH2- -CH2-CF2-, -CF2-CH2-, -CH2-C(0)-, or -C(0)-CH2-;
each R21 is independently hydrogen, halogen, or C1-C4-alkyl;
R2 is halogen, Ci-C4-alkyl, C -C6-cycloalkyl, CN, Ci-C4-alkoxy, C1-C4-haloalkoxy, S02(Ci-C4-alkyl), 5- or 6-membered heterocycloalkyl, -≡-R2A, -0(CH2)mR2B, NH(Ci- C4-alkyl), N(Ci-C4-alkyl)2, C(0)(C1-C4 -alkyl), optionally substituted aryl, or optionally substituted 5-membered heteroaryl;
m is an integer having an a value of 0, 1, 2, or 3;
R2A and R2B are each independently Ci-C4-alkyl, C3-C6-cycloalkyl, or Ci-C4 haloalkyl;
R3 is Ci-C4-alkyl,
Figure imgf000119_0001
, or Ci-C4-haloalkyl; and
each R4 is independently H, D, or F;
with the proviso that the compound is not selected from the group consisting
Figure imgf000119_0002
or a pharmaceutically acceptable salt thereof.
2. The compound of claim 1 wherein the compound has the structure of Formula (II):
Figure imgf000121_0001
(II);
or a pharmaceutically acceptable salt thereof,
wherein:
Q1 is CR20=CR20, N=CH, CH=N, 0-N=CH , HC=N-0 , 0r S;
Q2 is CR20 or N;
p is an integer having a value of 1 or 2;
each R10 is independently hydrogen, halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Cr- C4-alkoxy, Ci-C4-haloalkoxy, or C3-C6-cycloalkyl; and
each R 20 is independently hydrogen, halogen, Ci-C4-alkyl, CN, or Ci-C4-alkoxy.
3. The compound of claim 2 wherein the compound has the structure of Formula (III):
Figure imgf000121_0002
(in);
or a pharmaceutically acceptable salt thereof,
wherein:
t is an integer having a value of 1 or 2. 4. The compound of claims 2 or 3 wherein the compound has the structure:
Figure imgf000121_0003
(IV);
or a pharmaceutically acceptable salt thereof. The compound of claims 2 or 3, wherein the compound has the structure of Formula
Figure imgf000122_0001
(V);
or a pharmaceutically acceptable salt thereof. 6. The compound of claim 2, wherein the compound has the structure of Formula (VI):
Rly
Figure imgf000122_0002
(VI);
armaceutically acceptable salt thereof.
7. The compound of claim 2, wherein the com ound has the structure of Formula (VII):
Figure imgf000122_0003
(VII);
or a pharmaceutically acceptable salt thereof.
8. The compound of claim 2 wherein the compound has the structure of Formula (VIII):
Figure imgf000122_0004
(VIII);
or a pharmaceutically acceptable salt thereof,
wherein: q is an integer having a value of 0 or 1 ;
X is 0Θ ; and
Y is when q is 1 ; or
Y is N when q is 0.
9. The compound of claim 8, wherein q is 0.
10. The compound of claim 8, wherein q is 1.
11. The compound of claim 2, wherein the com ound has the structure of Formula (IX):
Figure imgf000123_0001
(ix);
or a pharmaceutically acceptable salt thereof,
wherein:
q is an integer having a value of 0 or 1 ;
X is O® ; and
Y is when q is 1 ; or
Y is N when q is 0.
12. The compound of claim 11, q is 0.
13. The compound of claim 11, wherein q is 1.
14. The compound of claim 1 wherein the compound has the structure of Formula (X):
Figure imgf000123_0002
or a pharmaceutically acceptable salt thereof,
wherein:
Q2 is CR20 or N;
p and t are integers each independently having a value of 1 or 2;
each R10 is independently hydrogen, halogen, Ci-C4-alkyl, C1-C4-haloalkyl, CN, Cr- C4-alkoxy, Ci-C4-haloalkoxy, or C3-C6-cycloalkyl; and
each R 20 is independently hydrogen, halogen, Ci-C4-alkyl, CN, or Ci-C4-alkoxy.
15. The compound of claim 14 wherein the compound has the structure of Formula (XI):
Figure imgf000124_0001
(xi);
or a pharmaceutically acceptable salt thereof.
The compound of claim 15 wherein the compound has the structure of Formula (XII):
Figure imgf000124_0002
(xii);
or a pharmaceutically acceptable salt thereof.
The compound of claim 15, wherein the compound has the structure of Formula
Figure imgf000124_0003
(xiii);
or a pharmaceutically acceptable salt thereof.
18. The compound of any one of claims 1 - 17, wherein Z is CH.
19. The compound of any one of claims 1 - 18, wherein L is selected from the group consisting of:
Figure imgf000125_0001
20. The compound of any one of claims 1 - 18, wherein L is selected from the group consisting of:
Figure imgf000125_0002
21. The compound of any one of claims 1 - 19, wherein W is CH2, CH=CH, or C=C.
22. The compound of any one of claims 1 - 20, wherein W is O.
23. The compound of claim 22, wherein R is methyl.
24. The compound of claim 22 or 23, wherein R is phenyl, furanyl, thienyl, -^=-CF3> OCF3, or OCHF2, wherein the phenyl can be optionally substituted with halogen, CN, Q-G alkyl, OH, Ci-C4 alkoxy, formyl, acetyl, acetoxy, or carboxyl, and wherein the furanyl and the thienyl each can be optionally substituted with C1-C4-alkyl.
25. The compound of claim 24, wherein R is unsubstituted phenyl, unsubstituted furanyl, 5-methyl-2-furanyl, -≡_CF3> OCF3, or OCHF2.
26. The compound of any one of claims 22 - 25, wherein L is selected from the group
Figure imgf000126_0001
28. The compound of any one of claims 22 - 27, wherein R is hydrogen, halogen, methyl, CN, OCH3, CF3, OCF3, OCHF2, or cyclopropyl.
29. The compound of claim 28, wherein R10 is hydrogen, fluorine, bromine, methyl, or OCH3.
30. The compound of any one of claims 22 - 29, wherein R 20 is hydrogen or halogen.
31. The compound of claim 30, wherein R 20 is hydrogen, fluorine, or chlorine.
32. The compound of any one of claims 14 - 17, wherein R is hydrogen or C1-C4-alkyl.
33. The compound of claim 32, wherein R is hydrogen or methyl.
34. The compound of any one of claims 22 - 28, wherein R is unsubstituted furanyl.
35. The compound of any one of claims 22 - 28, wherein R is 5-methyl-2-furanyl.
36. The compound of claim 3, wherein:
R1 is OH;
W is O;
Z is CH;
Figure imgf000127_0001
R is unsubstituted furanyl or 5-methyl-2-furanyl;
R is methyl;
p and t are 1 ;
R10 is hydrogen, fluorine, bromine, methyl, or OCH3; and
R 20 is hydrogen, fluorine, or chlorine.
37. A pharmaceutical composition comprising a pharmaceutically acceptable excipient and the compound of any one of claims 1 - 36, or a pharmaceutically acceptable salt thereof.
38. A method of activating PPAR5, comprising contacting a PPAR5 protein with an effective amount of one or more compounds of any one of claims 1 - 36, or a
pharmaceutically acceptable salt thereof, or the pharmaceutical composition of claim 37, thereby activating the PPAR5 protein.
39. The method of claim 38, wherein the PPAR5 protein is present in a subject, and contacting comprises administering the one or more compounds to the subject.
40. A method of treating a PPAR5 related disease or condition in a subject, comprising administering to the subject in need thereof a therapeutically effective amount of one or more compounds of any one of claims 1 - 36, or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of claim 37.
41. A method of increasing or maintaining muscle mass or muscle tone in a subject, comprising administering to the subject a therapeutically effective amount of one or more compounds of any one of claims 1 - 36, or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of claim 37.
42. The method of claim 40, wherein the PPAR5 related disease is a muscular disease, or a demyelinating disease.
43. The method of claim 42, wherein the muscular disease is a muscular dystrophy disease.
44. The method of claim 43, wherein the muscular dystrophy disease is Duchenne muscular dystrophy, Becker muscular dystrophy, limb-girdle muscular dystrophy, congenital muscular dystrophy, facioscapulohumeral muscular dystrophy, myotonic muscular dystrophy, oculopharyngeal muscular dystrophy, distal muscular dystrophy, or Emery-Dreifuss muscular dystrophy.
45. The method of claim 42, wherein the demyelinating disease is multiple sclerosis, Charcot-Marie-Tooth disease, Pelizaeus-Merzbacher disease, encephalomyelitis,
neuromyelitis optica, adrenoleukodystrophy, or Guillian-Barre syndrome.
46. The method of claim 40, wherein the PPAR5 related disease is a muscle structure disorder, a neuronal activation disorder, a muscle fatigue disorder, a muscle mass disorder, a mitochondrial disease, a beta oxidation disease, a metabolic disease, a cancer, a vascular disease, an ocular vascular disease, or a muscular eye disease.
47. The method of claim 46, wherein:
the muscle structure disorder is selected from Bethlem myopathy, central core disease, congenital fiber type disproportion, distal muscular dystrophy (MD), Duchenne & Becker MD, Emery-Dreifuss MD, facioscapulohumeral MD, hyaline body myopathy, limb- girdle MD, a muscle sodium channel disorders, myotonic chondrodystrophy, myotonic dystrophy, myotubular myopathy, nemaline body disease, oculopharyngeal MD, or stress urinary incontinence;
the neuronal activation disorder is selected from amyotrophic lateral sclerosis, Charcot- Marie-Tooth disease, Guillain-Barre syndrome, Lambert-Eaton syndrome, multiple sclerosis, myasthenia gravis, nerve lesion, peripheral neuropathy, spinal muscular atrophy, tardy ulnar nerve palsy, or toxic myoneural disorder;
the muscle fatigue disorder is selected from chronic fatigue syndrome, diabetes (type I or II), glycogen storage disease, fibromyalgia, Friedreich's ataxia, intermittent claudication, lipid storage myopathy, MELAS, mucopolysaccharidosis, Pompe disease, or thyrotoxic myopathy; the muscle mass disorder is cachexia, cartilage degeneration, cerebral palsy, compartment syndrome, critical illness myopathy, inclusion body myositis, muscular atrophy (disuse), sarcopenia, steroid myopathy, or systemic lupus erythematosus;
the mitochondrial disease is selected from Alpers's Disease, CPEO-Chronic progressive external ophthalmoplegia, Kearns-Sayra Syndrome (KSS), Leber Hereditary Optic Neuropathy (LHON), MELAS-Mitochondrial myopathy, encephalomyopathy, lactic acidosis, and stroke-like episodes, MERRF-Myoclonic epilepsy and ragged-red fiber disease, NARP-neurogenic muscle weakness, ataxia, and retinitis pigmentosa, or Pearson Syndrome; the beta oxidation disease is selected from systemic carnitine transporter, carnitine palmitoyltransferase ( CPT ) II deficiency, very long-chain acyl-CoA dehydrogenase
(LCHAD or VLCAD) deficiency, trifunctional enzyme deficiency, medium-chain acyl-CoA dehydrogenase (MCAD) deficiency, short-chain acyl-CoA dehydrogenase (SCAD) deficiency or riboflavin-responsive disorders of β -oxidation (RR -MADD);
the metabolic disease is selected from hyperlipidemia, dyslipidemia,
hypercholesterolemia, hypertriglyceridemia, HDL hypocholesterolemia, LDL
hypercholesterolemia and/or HLD non-cholesterolemia, VLDL hyperproteinemia, dyslipoproteinemia, apolipoprotein A-I hypoproteinemia, atherosclerosis, disease of arterial sclerosis, disease of cardiovascular systems, cerebrovascular disease, peripheral circulatory disease, metabolic syndrome, syndrome X, obesity, diabetes (type I or II), hyperglycemia, insulin resistance, impaired glucose tolerance, hyperinsulinism, diabetic complication, cardiac insufficiency, cardiac infarction, cardiomyopathy, hypertension, Non-alcoholic fatty liver disease (NAFLD), Nonalcoholic steatohepatitis (NASH), thrombus, Alzheimer disease, neurodegenerative disease, demyelinating disease, multiple sclerosis, adrenal leukodystrophy, dermatitis, psoriasis, acne, skin aging, trichosis, inflammation, arthritis, asthma,
hypersensitive intestine syndrome, ulcerative colitis, Crohn's disease, or pancreatitis;
the cancer is a cancer of the colon, large intestine, skin, breast, prostate, ovary, or lung;
the vascular disease is selected from peripheral vascular insufficiency, peripheral vascular disease, intermittent claudication, peripheral vascular disease (PVD), peripheral artery disease (PAD), peripheral artery occlusive disease (PAOD), or peripheral obliterative arteriopathy;
the ocular vascular disease is selected from age-related macular degeneration (AMD), stargardt disease, hypertensive retinopathy, diabetic retinopathy, retinopathy , macular degeneration, retinal haemorrhage, or glaucoma; and the muscular eye disease is selected from strabismus, progressive external ophthalmoplegia, esotropia, exotropia, a disorder of refraction and accommodation, hypermetropia, myopia, astigmatism, anisometropia, presbyopia, a disorders of
accommodation, or internal ophthalmoplegia.
48. The method of any of claims 38 - 47, wherein administering comprises intraarticular, intravenous, intramuscular, intratumoral, intradermal, intraperitoneal, subcutaneous, oral, topical, intrathecal, inhalational, transdermal, or rectal administration.
49. The method of any of claims 38 - 48, wherein the one or more compounds are administered to the subject at a dose of about 1 mg/kg to about 10 mg/kg.
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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11931365B2 (en) 2022-01-25 2024-03-19 Reneo Pharmaceuticals, Inc. Use of PPAR-delta agonists in the treatment of disease

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11077105B2 (en) 2016-11-15 2021-08-03 University of Pittsburgh—of the Commonwealth System of Higher Education Therapy for mitochondrial fatty acid beta-oxidation and transport disorders
EP4015623A1 (en) 2020-12-17 2022-06-22 Universite De Montpellier Pre-treatment of msc with ppar beta/delta agonist for treatment of ischemia-reperfusion injury

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040214888A1 (en) * 2001-06-04 2004-10-28 Fumiyoshi Matsuura Carboxylic acid derivative and medicine comprising salt or ester of the same
US20050075378A1 (en) * 2001-06-07 2005-04-07 Gossett Lynn Stacy Modulators of peroxisome proliferator activated receptors (ppar)
US20060116410A1 (en) * 2004-09-06 2006-06-01 Banner David W 4-Aminomethyl benzamidine derivatives
US20070082907A1 (en) * 2003-11-25 2007-04-12 Eli Lilly And Company Peroxisome proliferator activated receptor modulators
US7655641B2 (en) * 2003-02-14 2010-02-02 Eli Lilly And Company Sulfonamide derivatives as PPAR modulators
US20140033088A1 (en) 2008-10-08 2014-01-30 Robert Shaver Electronic content change tracking
WO2014165827A1 (en) * 2013-04-05 2014-10-09 Salk Institute For Biological Studies Ppar agonists

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040214888A1 (en) * 2001-06-04 2004-10-28 Fumiyoshi Matsuura Carboxylic acid derivative and medicine comprising salt or ester of the same
US20050075378A1 (en) * 2001-06-07 2005-04-07 Gossett Lynn Stacy Modulators of peroxisome proliferator activated receptors (ppar)
US7655641B2 (en) * 2003-02-14 2010-02-02 Eli Lilly And Company Sulfonamide derivatives as PPAR modulators
US20070082907A1 (en) * 2003-11-25 2007-04-12 Eli Lilly And Company Peroxisome proliferator activated receptor modulators
US20060116410A1 (en) * 2004-09-06 2006-06-01 Banner David W 4-Aminomethyl benzamidine derivatives
US20140033088A1 (en) 2008-10-08 2014-01-30 Robert Shaver Electronic content change tracking
WO2014165827A1 (en) * 2013-04-05 2014-10-09 Salk Institute For Biological Studies Ppar agonists

Non-Patent Citations (48)

* Cited by examiner, † Cited by third party
Title
"Remington's, Pharmaceutical Sciences", MACK PUBLISHING CO.
AMTHOR H ET AL., PNAS, vol. 106, no. 18, 2009, pages 7479 - 84
BOGDANOVICH ET AL., NATURE, vol. 420, no. 6914, 2002, pages 418 - 21
BRACK ET AL., SCIENCE, vol. 317, no. 5839, 2007, pages 807 - 810
CHAZAUD ET AL., JCB, vol. 163, no. 5, 2003, pages 1133 - 1143
CHRISTINA LAMERS ET AL: "Therapeutic modulators of peroxisome proliferator-activated receptors (PPAR): a patent review (2008-present)", EXPERT OPIN. THER. PATENTS, vol. 22, no. 7, 1 July 2012 (2012-07-01), pages 803 - 841, XP055049661, DOI: 10.1517/13543776.2012.699042 *
CONTRERAS-SHANNON ET AL., AM J PHYSIOL CELL PHYSIOL, vol. 292, 2007, pages C953 - 967
DAY ET AL., DEV BIOL, vol. 304, no. 1, 2007, pages 246 - 259
DAY ET AL.: "Nestin-GFP reporter expression defines the quiescent state of skeletal muscle satellite cells", DEV BIOL, vol. 304, no. L, 2007, pages 246 - 259
GE ET AL., AM J PHYSIOL CELL PHYSIOL, vol. 297, no. 6, 2009, pages C1434 - 1444
GOODMAN; GILMAN: "The Pharmacological Basis of Therapeutics", PERGAMON
GROUNDS ET AL., CELL TISSUE RES, vol. 250, 1987, pages 563 - 569
GROUNDS; MCGEACHIE, CELL TISSUE RES, vol. 255, no. 2, 1989, pages 385 - 391
HAMER ET AL., JANAT, vol. 200, 2002, pages 69 - 79
HUSMANN I ET AL., CYTOKINE GROWTH FACTOR REV, vol. 7, no. 3, 1996, pages 249 - 258
J. PHARM. SCI., vol. 66, 1977, pages 1 - 19
JONKER ET AL., NATURE, vol. 485, no. 7398, 2012, pages 391 - 4
KARPATI G; MOLNAR MJ: "Skeletal muscle repair and regeneration", 2008, SPRINGER
KARPATI; MOLNAR: "Skeletal muscle repair and regeneration", 2008, SPRINGER, article "Muscle fibre regeneration in human skeletal muscle diseases"
KATSUHIKO MITACHI ET AL: "Synthesis and structureactivity relationship of disubstituted benzamides as a novel class of antimalarial agents", BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, PERGAMON, AMSTERDAM, NL, vol. 22, no. 14, 31 May 2012 (2012-05-31), pages 4536 - 4539, XP028504396, ISSN: 0960-894X, [retrieved on 20120607], DOI: 10.1016/J.BMCL.2012.05.124 *
LUQUET ET AL., FASEB J, vol. 17, no. 15, 2003, pages 2299 - 2301
MARKERT ET AL., MUSCLE NERVE, vol. 43, no. 4, 2011, pages 464 - 78
MCCROSKERY S ET AL., J CELL BIOL, vol. 162, no. 6, 2003, pages 1135 - 1147
MENETREY ET AL., J BONE JOINY SURG BR, vol. 82, no. 1, 2000, pages 131 - 7
MIGNONE ET AL., J COMP NEUROL, vol. 469, no. 3, 2004, pages 311 - 324
MIURA ET AL., HUM MOL GENET, vol. 18, no. 23, 2009, pages 4640 - 4649
MUSARO A ET AL., NAT GENET, vol. 27, 2001, pages 195 - 200
NARKAR ET AL., CELL, vol. 134, no. 3, 2008, pages 405 - 415
NARKAR VA ET AL., CELL, vol. 134, no. 3, 2008, pages 405 - 415
NICASTRO ET AL., BRAZ J MED BIOL RES, vol. 44, no. 11, 2011, pages 1070 - 9
OLIVER, GROWTH FACTORS, vol. 7, no. 2, 1992, pages 97 - 106
PLOS BIOL., vol. 3, no. 1, 2004, pages E61
ROBERTS ET AL., JANAT, vol. 191, 1997, pages 585 - 594
SADOWSKI ET AL., GENE, vol. 118, 1992, pages 137
SAITO, MUSCLE NERVE, vol. 23, no. 4, 2000, pages 490 - 7
SEGAWA ET AL., EXP CELL RES, vol. 314, no. 17, 2008, pages 3232 - 3244
SHEFER ET AL., PLOS ONE, vol. 5, no. 10, 2010, pages E13307
SUMMAN ET AL., AM J PHYSIOL REGUL INTEGR COMP PHYSIOL, vol. 290, 2006, pages R1488 - R1495
TEIXEIRA ET AL., MUSCLE NERVE, vol. 28, no. 4, 2003, pages 449 - 459
WAGNER ET AL., ANN NEUROL, vol. 52, no. 6, 2002, pages 832 - 6
WANG ET AL., CELL, vol. 113, 2003, pages 159 - 170
WANG ET AL., PLOS BIOL, vol. 2, no. 10, pages E294
WARREN ET AL., AM J PHYSIOL CELL PHYSIOL, vol. 286, no. 5, 2004, pages C1031 - 1036
WARREN ET AL.: "Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models", J PHYSIOL., vol. 582.2, 2007, pages 825 - 841
WARSHAWSKY A M ET AL: "Synthesis and evaluation of aminomethyl dihydrocinnamates as a new class of PPAR ligands", BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, PERGAMON, AMSTERDAM, NL, vol. 16, no. 24, 15 December 2006 (2006-12-15), pages 6328 - 6333, XP027966015, ISSN: 0960-894X, [retrieved on 20061215] *
YABLONKA-REUVENI Z ET AL.: "Isolation and clonal analysis of satellite cells from chicken pectoralis muscle", DEV BIO, vol. 119, 1987, pages 252 - 259
YAHIAOUI ET AL., J PHYSIOL, vol. 586, 2008, pages 3991 - 4004
ZACKS ET AL., MUSCLE NERVE, vol. 5, 1982, pages 152 - 161

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
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