WO2016018978A1

WO2016018978A1 - Quantifying monoclonal antibody therapeutics by lc-ms/ms

Info

Publication number: WO2016018978A1
Application number: PCT/US2015/042580
Authority: WO
Inventors: David R. Barnidge; Maria Alice Vieira WILLRICH; David L. Murray; Melissa SNYDER
Original assignee: Mayo Foundation For Medical Education And Research
Priority date: 2014-07-29
Filing date: 2015-07-29
Publication date: 2016-02-04
Also published as: EP3175242A1; US20180106815A1; US10690676B2; EP3175242A4

Abstract

This document relates to methods for quantifying antibody therapeutics using mass spectrometry techniques by providing a sample comprising a monoclonal antibody therapeutic, adding an internal standard to the sample, wherein the internal standard is a nonisotopically labeled immunoglobulin from a non-human species, and subjecting the sample to a mass spectrometry technique to quantify the monoclonal antibody therapeutic in the sample.

Description

Quantifying Monoclonal Antibody Therapeutics by LC-MS/MS

CROSS REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of U.S. Provisional Serial No. 62/030,493 filed July 29, 2014. The disclosure of the prior application is considered part of (and is incorporated by reference in) the disclosure of this application.

TECHNICAL FIELD

This disclosure relates to methods for quantifying monoclonal antibody therapeutics using mass spectrometry techniques.

BACKGROUND

Human monoclonal antibodies contain two identical heavy chain polypeptides (each about 54 kilodaltons in MW) and two identical light chain polypeptides (each about 24 kilodaltons in molecular weight) which are bound together by disulfide bonds. Each light chain and each heavy chain include a constant region and a variable region. The variable region is located on the N-terminal portion of each chain and the constant region is located on the C-terminal portion of each chain. The constant regions of the light chains and heavy chains have different amino acid sequences, and can be used to identify the isotype of the heavy or light chain. In humans, there are two different isotypes of light chain polypeptides referred to as either kappa or lambda; and five different isotypes of heavy chain polypeptides referred to as gamma (IgG), alpha (IgA), mu (IgM), epsilon (IgE), and delta (IgD).

Clinical laboratories currently monitor and quantify the levels of monoclonal antibody therapeutics in patients receiving such treatment using immunoassays, such as ELISA.

SUMMARY

Provided herein is a method for quantifying a monoclonal antibody therapeutic in a sample, comprising: providing a sample comprising a monoclonal antibody therapeutic; adding an internal standard to the sample, wherein the internal standard is a non- isotopically labeled immunoglobulin from a non-human species; and subjecting the sample to a mass spectrometry technique to quantify the monoclonal antibody therapeutic in the sample.

In some embodiments, the monoclonal antibody therapeutic is a humanized monoclonal antibody therapeutic. In some embodiments, the monoclonal antibody therapeutic is a human monoclonal antibody therapeutic. In some embodiments, the monoclonal antibody therapeutic is selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituximab and adalimumab. For example, the monoclonal antibody therapeutic can be infliximab.

In some embodiments, the non-isotopically labeled immunoglobulin from a non- human species is a non-human IgG antibody. In some embodiments, the non-isotopically labeled immunoglobulin from a non-human species is a horse IgG.

In some embodiments, the method further comprises digesting the antibodies in the sample prior to the mass spectrometry step. In some embodiments, digesting the antibodies comprises digestion using trypsin.

In some embodiments, the method further comprises purifying the sample prior to the mass spectrometry step. For example, the sample may be purified using antibody affinity resin purification.

In some embodiments, the mass spectrometry technique comprises a tandem mass spectrometry (MS/MS) technique. In some embodiments, the mass spectrometry technique comprises an LC-MS/MS technique. For example, the mass spectrometry technique can be a LC-ESI TRIPLE QUAD MS. In some embodiments, the mass spectrometry technique comprises the use of positive ion mode. In some embodiments, the mass spectrometry technique comprises selective reaction monitoring (SRM) analysis. In some embodiments, the SRM analysis comprises monitoring the horse IgG constant region.

In some embodiments, the monoclonal antibody therapeutic light chains are decoupled from the monoclonal antibody therapeutic heavy chains prior to the mass spectrometry step. In some embodiments, quantifying the monoclonal antibody therapeutic in the sample comprises measuring the variable region peptide of the monoclonal antibody therapeutic. In some embodiments, quantifying the monoclonal antibody therapeutic in the sample comprises subjecting the sample to a LC-MS/MS mass spectrometry technique.

In some embodiments, the sample is a biological sample. In some embodiments, the biological sample is a whole blood sample, serum sample, saliva sample, plasma sample, or urine sample. For example, the biological sample can be a serum sample.

Also provided herein is a method of monitoring a treatment of a disorder in a subject, wherein the disorder is treated with a monoclonal antibody therapeutic, comprising:

a) providing a first sample of the subject during treatment;

b) providing a second sample of the subject on a subsequent treatment or after treatment;

c) subjecting the first and second sample to a mass spectrometry technique

comprising an internal standard to obtain a mass spectrum of the sample, wherein the internal standard is a horse IgG;

d) quantifying the monoclonal antibody therapeutic in the first and second sample; and

e) comparing the amounts from the first and second sample.

In some embodiments, the monitoring a treatment of a disorder in a subject comprises quantifying a monoclonal antibody therapeutic in a sample.

In some embodiments, the disorder is one that is treated with a humanized monoclonal antibody therapeutic. In some embodiments, the disorder is one that is treated with a human monoclonal antibody therapeutic. In some embodiments, the disorder is one that is treated with infliximab, alemtuzumab, eculizumab, rituxumab or adalimumab. For example, the disorder can be one that is treated with infliximab.

Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this description belongs. Methods and materials are described herein for use in the present invention; other, suitable methods and materials known in the art can also be used. The materials, methods, and examples are illustrative only and not intended to be limiting. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In case of conflict, the present specification, including definitions, will control. Other features and advantages of the invention will be apparent from the following detailed description and figures, and from the claims.

DESCRIPTION OF DRAWINGS

FIG. 1 provides liquid chromatograms with peaks for heavy and light chain labeled infliximab internal standard (top graph), and with horse IgG and infliximab heavy and light chain transitions (bottom graph).

FIG. 2 shows a standard curve of infliximab in commercial pooled serum using heavy chain transition HCy4.

FIG. 3 shows a comparison of infliximab concentrations calculated using LC- MS/MS and those obtained from an ELISA method.

FIG. 4 provides results for infliximab levels measured by SRM LC-MS/MS in patients receiving infliximab infusions. Visit #1 was measured at trough levels; visit #2 at 48-72 hours after infliximab infusion; visit #3 at 28-32 days after infliximab infusion.

FIG. 5 shows liquid chromatograms of normal human serum after Ig Melon Gel purification and trypsin digest (top graph) and normal human serum spiked with 25 μg/mL alemtuzumab after Ig Melon Gel purification and trypsin digest (bottom graph).

FIG. 6 shows liquid chromatograms used in an SRM analysis for eculizumab. Top graph shows a test sample. Second graph shows a chromatogram of the horse IgGl standard. Third graph shows a chromatogram of eculizumab heavy chain (HC). Bottom graph shows a chromatogram of eculizumab light chain (LC).

FIG. 7 provides a linear regression graph used to quantify eculizumab in human serum using the area ratio of the light chain to the horse IgG constant region.

FIG. 8 provides a light chain standard curve for rituximab. Expected

concentration ^g/mL) is shown on the y-axis; measured concentration ^g/mL) is shown on the x-axis. DETAILED DESCRIPTION

Monoclonal antibody therapeutics is a rapidly growing class of drugs. This class of protein drug presents unique challenges when compared to small molecule drugs for quantitating levels in patients. Since the monoclonal antibody therapeutics have very similar molecular structure to normal background polyclonal antibodies in patients sera, most methods used for quantifying them rely on the interaction of the monoclonal antibody with its target antigen. Such methods, while useful, can be subject to cross reactivity with other antibodies present in the sera. This method directly quantitates the monoclonal antibody without the need for interaction with the antigen. Provided herein are methods of quantifying monoclonal antibody therapeutics that include monitoring tryptic peptides from the unique variable regions of the monoclonal antibody and comparing them to the constant regions of a non-human antibody added as an internal standard. This method offers advantages compared to other methods as the addition of the non-human antibody as internal standard affords enhanced accuracy. For example, not only does the standard have a similar, yet distinct, mass profile, but it is also similarly reactive through all preparatory steps including, for example, enzymatic digestion and purification.

Figure 1 presents an example of how in silico prediction of peptide digestion patterns on a monoclonal antibody therapeutic would be correlated with an LC-MS/MS chromatogram. A sample containing an antibody therapeutic would first be processed, for example, by enzymatic digestion, and then analyzed by mass spectrometry, for example, using LC-MS/MS. The most abundant peptides unique to the heavy and light chain variable regions of the monoclonal antibody therapeutic would be chosen for monitoring. The expected LC pattern in an LC-MS/MS would exhibit two peaks correlating to the peptides from the heavy and light chains of the monoclonal antibody therapeutic (top graph). Known amounts of a non-human monoclonal antibody, for example, horse IgG, can also be added as an internal standard to samples containing the human monoclonal antibody therapeutic. The intact horse immunoglobulin represents an improvement over commonly used isotopically labeled peptides since it is present in the purification and digestion step and normalizes for sample to sample differences in sample preparation. Quantitation of the monoclonal antibody therapeutic may be accomplished using standard SRM analysis to generate a standard curve, for example, Figure 2, to be used to calculate concentrations in biological samples containing unknown amounts of the monoclonal antibody therapeutic.

In some embodiments, the monoclonal antibody therapeutic is a humanized monoclonal antibody therapeutic. In some embodiments, the monoclonal antibody therapeutic is a human monoclonal antibody therapeutic. In some embodiments, the monoclonal antibody therapeutic is selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituximab, adalimumab, and mixtures thereof. For example, the monoclonal antibody therapeutic can be infliximab.

In some embodiments, the non-isotopically labeled immunoglobulin from a non- human species is a non-human IgG antibody. In some embodiments, the non-isotopically labeled immunoglobulin from a non-human species is a horse IgG. In some

embodiments, the non-isotopically labeled immunoglobulin from a non-human species is a mouse IgG.

In some embodiments, the immunoglobulins are purified from the sample before digestion using precipitation, protein A/G affinity chromatography, affinity resin purification, chemical fractionation (e.g., antibody purification kits, such as Melon Gel Purification). For example, the sample may be purified using affinity resin purification.

In some embodiments, the method further comprises digesting one or more antibodies (e.g., the monoclonal antibody therapeutic and the internal standard) in the sample prior to the mass spectrometry step. In some embodiments, digesting the antibodies comprises digestion using trypsin. In some embodiments, the method further comprises purifying the sample prior to the mass spectrometry step. In some embodiments, the sample may be purified via centrifugation, filtration, ultrafiltration, dialysis, ion exchange chromatography, size exclusion chromatography, gel electrophoresis, or capillary electrophoresis.

In some embodiments, the mass spectrometry technique comprises a tandem mass spectrometry (MS/MS) technique. In some embodiments, the mass spectrometry technique comprises an LC-MS/MS technique. For example, the mass spectrometry technique can be LC-ESI TRIPLE QUAD MS. In some embodiments, the mass spectrometry technique comprises the use of positive ion mode. In some embodiments, the mass spectrometry technique comprises selective reaction monitoring (SRM) analysis. In some embodiments, the SRM analysis comprises monitoring the horse IgG constant region.

In some embodiments, the monoclonal antibody therapeutic light chains are decoupled from the monoclonal antibody therapeutic heavy chains prior to the mass spectrometry step.

In some embodiments, quantifying the monoclonal antibody therapeutic in the sample comprises measuring the variable region peptide of the monoclonal antibody therapeutic. In some embodiments, quantifying the monoclonal antibody therapeutic in the sample comprises subjecting the sample to a LC-MS/MS mass spectrometry technique.

a) providing a first sample of the subject during treatment;

b) providing a second sample of the subject on a subsequent treatment or after treatment; c) subjecting the first and second sample to a mass spectrometry technique comprising an internal standard to obtain a mass spectrum of the sample, wherein the internal standard is a horse IgG;

e) comparing the amounts from the first and second sample.

In some embodiments, the disorder is one that is treated with a humanized monoclonal antibody therapeutic. In some embodiments, the disorder is one that is treated with a human monoclonal antibody therapeutic. In some embodiments, the disorder is one that is treated with infliximab, alemtuzumab, eculizumab, rituximab, adalimumab, or a combination thereof. For example, the disorder can be one that is treated with infliximab.

Samples and Sample Preparation

A sample for analysis can be any biological sample, such as a tissue (e.g., adipose, liver, kidney, heart, muscle, bone, or skin tissue) or biological fluid (e.g., blood, serum, plasma, urine, lachrymal fluid, or saliva) sample. The biological sample can be from a subject that has been treated with a human monoclonal antibody, which includes, but is not limited to, a mammal, e.g. a human, dog, cat, primate, rodent, pig, sheep, cow, and horse. In some embodiments the biological sample comprises an exogenous monoclonal antibody. A sample can also be a man-made reagent, such as a mixture of known composition or a control sample.

A sample can be treated to remove components that could interfere with the mass spectrometry technique. A variety of techniques known to those having skill in the art can be used based on the sample type. Solid and/or tissue samples can be ground and extracted to free the analytes of interest from interfering components. In such cases, a sample can be centrifuged, filtered, and/or subjected to chromatographic techniques to remove interfering components (e.g., cells or tissue fragments). In yet other cases, reagents known to precipitate or bind the interfering components can be added. For example, whole blood samples can be treated using conventional clotting techniques to remove red and white blood cells and platelets.

Monoclonal antibodies can be isolated from the samples or enriched (i.e.

concentrated) in a sample using standard methods known in the art. Such methods include removing one or more non-monoclonal antibody contaminants from a sample. In some embodiments, the samples can be enriched or purified using centrifugation, filtration, ultrafiltration, dialysis, ion exchange chromatography, size exclusion chromatography, protein A/G affinity chromatography, affinity purification, precipitation, gel electrophoresis, capillary electrophoresis, and chemical fractionation (e.g., antibody purification kits, such as Melon Gel Purification). For example, the monoclonal antibodies can be purified by chemical-based fractionation, e.g., Melon Gel

Chromatography (Thermo Scientific), where Melon Gel resins bind to non-monoclonal antibody proteins in a sample and allow monoclonal antibodies to be collected in the flow-through fraction; or by affinity purification, e.g., by Protein A, Protein G, or Protein L purification, where monoclonal antibodies are bound by those proteins at physiologic pH and then released from the proteins by lowering the pH. When serum, plasma, or whole blood samples are used, a sample, such as a 10 - 250 μΐ sample, e.g., a 50 μΐ, can be directly subjected to Melon Gel, Protein A, Protein G, or Protein L purification. Size exclusion principles such as a TurboFlow column can also be employed to separate the non-monoclonal antibody contaminants from a sample. When urine samples are used, a urine sample can be buffered, e.g., a 50 μΐ urine sample can be diluted first with 50 μΐ of 50 mM ammonium bicarbonate.

In some embodiments, the monoclonal antibodies, or the heavy and/or light chains thereof, are substantially isolated. By "substantially isolated" is meant that the monoclonal antibodies are at least partially or substantially separated from the sample from which they were provided. Partial separation can include, for example, a sample enriched in the monoclonal antibodies (i.e., the heavy and/or light chains). Substantial separation can include samples containing at least about 10%, at least about 20%, at least about 30%), at least about 40%>, at least about 50%>, at least about 60%>, at least about 70%>, at least about 80%, at least about 90%, at least about 95%, at least about 97%, or at least about 99% by weight of the monoclonal antibody, or the heavy and/or light chains thereof. Methods for isolating monoclonal antibodies, such as those described above, are routine in the art.

Intact monoclonal antibodies can be further processed to decouple the light chains in a total monoclonal antibody sample from the heavy chains. Decoupling can be achieved by treating the total monoclonal antibodies with a reducing agent, such as DTT (2,3 dihydroxybutane-l,4-dithiol), DTE (2,3 dihydroxybutane-l,4-dithiol), thioglycolate, cysteine, sulfites, bisulfites, sulfides, bisulfides, TCEP (tris(2-carboxyethyl)phosphine), 2-mercaptoethanol, and salt forms thereof. In some embodiments, the reducing step is performed at elevated temperature, e.g., in a range from about 30 °C to about 65 °C, such as about 55 °C, in order to denature the proteins. In some embodiments, the sample is further treated, e.g., by modifying the pH of the sample or buffering the sample. In some embodiments, the sample can be acidified. In some embodiments, the sample can be neutralized (e.g., by the addition of a base such as bicarbonate).

Mass Spectrometry Methods

After sample preparation, a monoclonal antibody sample, such as a trypsin digested immunoglobulin enriched serum, can be subjected to a mass spectrometry (MS) technique, either directly or after separation on a high performance liquid

chromatography column (HPLC). LC-MS/MS is an analytical technique that combines the physical separation capabilities of liquid chromatography with the mass analysis capabilities of mass spectrometry, and is suitable for detection and potential identification of chemicals in a complex mixture. Any LC-MS instrument can be used, e.g., the ABSciex 5000 Mass Spectrometer (AB SCIEX, Framingham, MA, USA). In some embodiments, a reversed-phase CI 8 liquid chromatography HPLC column can be utilized. Any suitable reversed-phase CI 8 liquid chromatography HPLC column can be used, e.g., the Atlantis T3 3x100mm. The ion mass spectrum can be analyzed for one or more peaks corresponding to one or more heavy or light chain peptides in the sample. In some embodiments, the ratio is determined by the peak area of the selected ion peak(s). In some embodiments, electrospray ionization coupled to a quadrupole mass spectrometry (ESI Triple Quad MS) can be used to analyze the mass spectrum of a monoclonal antibody sample. A quadrupole mass analyzer (Q) consists of four cylindrical rods, set parallel to each other. In a quadrupole mass spectrometer, the quadrupole is the component of the instrument responsible for filtering sample ions based on their mass-to-charge ratio (m/z). Any ESI Triple Quad mass spectrometer can be used, e.g., the ABSciex API 5000 mass spectrometer.

Methods for screening biological samples and for diagnosing and monitoring disorders

The mass spectrometry based methods provided herein can also be used for monitoring the treatment of a disorder in a subject. The disorder may be a disorder that is treated with a monoclonal antibody therapeutic. In such cases, the methods provided herein may be used to monitor the levels of monoclonal antibody therapeutic present in the subject during or after a treatment regimen. For example, in a treatment regimen that involves repeated monthly dosing of a monoclonal antibody therapeutic, the method may be used to quantitate the monoclonal antibody therapeutic at trough level prior to the subsequent dose. In some embodiments, information on the trough level may be used to determine whether the desired concentration for therapeutic treatment of the disorder is being reached, or whether the frequency or dosage of the therapy needs to be adjusted.

In some embodiments, the method provided herein may monitor a disorder selected from rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis, Crohn's disease (including adult and pediatric Crohn's disease), plaque psoriasis, ulcerative colitis (including adult and pediatric ulcerative colitis), B-cell chronic lymphocytic leukemia, paroxysmal nocturnal hemoglobinuria (PNH), atypical hemolytic uremic syndrome (aHUS), granulomatosis with polyangiitis (Wegener's granulomatosis), microscopic polyangiitis (MP A), CD-20 positive chronic lymphocytic leukemia, and non-Hodgkin lymphoma (including large B-cell and low-grade or follicular non-Hodgkin lymphoma). For example, the disorder can be rheumatoid arthritis.

In some embodiments, the monoclonal antibody therapeutic is a human monoclonal antibody therapeutic. In some embodiments, the monoclonal antibody therapeutic is selected from infliximab, alemtuzumab, eculizumab, rituximab,

adalimumab, or any combination thereof. For example, the monoclonal antibody therapeutic can be infliximab.

EXAMPLES

General Methods.

Serum and Monoclonal antibody Reagents: Serum was collected from waste samples obtained from the clinical laboratory.

Reagents: Ammonium bicarbonate, dithiothreitol (DTT), and formic acid were purchased from Sigma- Aldrich (St. Louis, MO). Melon Gel was purchased from Thermo-Fisher Scientific (Waltham MA). Water, acetonitrile, and 2-propanol were purchased from Honeywell Burdick and Jackson (Muskegon, MI).

Serum: A volume of 50 μί of serum was enriched for monoclonal antibodies using Melon Gel following the manufacturer's instructions. After monoclonal antibody enrichment, 25 of sample was reduced by adding 25 μΐ, of 100 mM DTT and 25 μΐ, of 50 mM ammonium bicarbonate then incubated at 55°C for 15 minutes before injection. Samples were placed into 96 deep-well PCR plates (300 μΐ, volume) at 9°C while waiting for injection. ESI-Q-TOF MS: Spectra were collected on an ABSciex Triple Quad 5000 mass spectrometer (ABSciex, Vaughan ON, CA) in ESI positive mode with a Turbo V dual ion source with an automated calibrant delivery system (CDS). Source conditions were: IS: 5500, Temp: 500, CUR: 45, GS1 : 35, GS2: 30, CE: 50±5. TOF MS scans were acquired from m/z 600-2500 with an acquisition time of 100 ms. Fragment ion scans were acquired from m/z 350-2000 with an acquisition time of 100 ms. The instrument was calibrated every 5 injections through the CDS using calibration solution supplied by the

manufacturer.

MS Data Analysis: Analyst TF vl .6 was used for instrument control. Data were viewed using Analyst TF vl .6 and Peak View vl .2.0.3. Peptides were separated on reverse-phase C18 liquid chromatography (Atlantis T3 3x100 mm) and subjected to MS/MS using an ABSciex 5000 triple quad MS instrument. Example 1 - Infliximab

Preparation of sample

A list of tryptic peptides unique to the heavy and light chain variable regions were predicted by in silico digestion of infliximab variable region sequences found in the

IMGT database (http://www.imgt.org/3Dstructure-DB). Infliximab (Remicade™, Janssen Biotech, Inc.) was reconstituted to 10 mg/mL in 50 mM ammonium bicarbonate, reduced, alkylated and digested with trypsin (1 : 20 enzyme : substrate ratio) at 37°C for 4 hours.

Digests were analyzed by IDA LC-ESI TRIPLE QUADMS. The most abundant peptides matching the in silico list were chosen for subsequent studies.

Quantitation of infliximab was accomplished using standard SRM analysis on an ABSciex API 5000 using pooled human serum from healthy controls or 50 mM ammonium bicarbonate, each spiked with infliximab. A 9-point standard curve was generated [blank, 0.25, 0.5, 1, 2, 5, 10, 20 and 50 μg/mL].

A known concentration of purified horse IgG (200 ug/mL) with a unique non- human constant region peptide was added to each sample as a pre-analytical digestion control along with stable isotope-labeled peptide internal standards to monitor HPLC retention times.

LC-MS/MS Analysis

Samples were processed to remove non-immunoglobulin proteins using the Melon Gel purification kit (Pierce, Rockford, IL), followed by trypsin digestion. Peptides were separated on reverse-phase CI 8 liquid chromatography (Atlantis T3 3x100 mm) and subjected to MS/MS. A typical chromatogram for the SRM analysis monitoring for the peptides for horse IgG constant region, and the heavy chain and light chain peptide from infliximab are shown in Figure 1. Figure 1 shows liquid chromatograms with peaks for heavy and light chain labeled infliximab internal standard (top graph), and with horse IgG and infliximab heavy and light chain transitions (bottom graph).

Correlation of Experimental Data to Expected Theoretical Results

The ability to accurately quantitate the level of infliximab in patient sera was demonstrated by spiking known amounts of infliximab into patient serum and plotting the heavy chain peptide response as a function of drug level. The results of the normal pooled serum spiked at various levels of infliximab demonstrate that the peak areas are linearly correlated with infliximab levels (Figure 2). Figure 2 shows the measured and calculated infliximab concentration (y-axis; μg/mL) in comparison to the theoretical infliximab concentration (x-axis; μg/mL). The standard curve was generated with infliximab at 0 to 100 μg/mL concentrations in commercial pooled human serum using heavy chain transition HCy4.

Correlation ofLC-MS/MS Concentrations to Other Methods

The LC-MS/MS method was applied to a series of patients who received infliximab treatments. The method was compared to a commercially available ELISA kit for infliximab (Immunodiagnostik, Germany). The resulting concentration versus time curves demonstrate the ability of the method to quantitate over time (Figure 3). Figure 3 shows the infliximab concentration as measured by the LC-MS/MS method (y-axis; μg/mL) as compared with that measured using the ELISA method (x-axis; μg/mL). The results demonstrate the LC-MS/MC method correlates to the ELISA method with a linear regression of R² = 0.82.

Example 2 - Infliximab in Patients

The protocol was as performed in Example 1. Patients' immunoglobulins were purified by precipitation with 55 μΐ_^ of a saturated ammonium sulfate solution prior to digestion and analysis.

The LC-MS/MS method was used to monitor consenting patients who were receiving infliximab therapy. The results confirmed that this method may be useful to monitor concentrations of infliximab in patients. Figure 4 shows the change in infliximab concentration (y-axis; μ§/ηιΙ.) over a series of three patient visits (x-axis) at trough level (visit #1), at 48-72 hours after infliximab infusion (visit #2), and at 28-32 days after infusion (visit #3).

Example 3 - Alemtuzumab

A list of tryptic peptides unique to the heavy and light chain variable regions were predicted by in silico digestion of alemtuzumab variable region sequences found in the IMGT database (http://www.imgt.org/3Dstructure-DB). Alemtuzumab (Campath™, Genzyme, Inc.) was reconstituted to 10 mg/mL in 50 mM ammonium bicarbonate, reduced, alkylated and digested with trypsin (1 :20 enzyme: substrate ratio) at 37°C for 4 hours. Digests were analyzed by IDA LC-ESI-Q-TOF MS. The most abundant peptides matching the in silico list were chosen for subsequent studies.

Alemtuzumab was then spiked into normal human serum at a 25 μg/mL level. A dilution series was made from the 25 μg stock. Samples were purified using Melon Gel and digested in a similar manner to Example 1. Identified alemtuzumab tryptic peptides were present in the all spiked samples and no significant amount of the peptides was observed in the normal pooled sera (Figure 5).

Example 4 - Eculizumab

A list of tryptic peptides unique to the heavy and light chain variable regions were predicted by in silico digestion of eculizumab variable region sequences provided by the manufacturer (Alexion). Eculizumab was reconstituted to 10 mg/mL in 50 mM ammonium bicarbonate, reduced, alkylated and digested with trypsin (1 :20

enzyme: substrate) at 37oC for 4 hours. Digests were analyzed by IDA LC-ESI-Q- TOFMS; the most abundant peptides matching the in silico list was chosen for subsequent studies.

Quantitation of eculizumab was accomplished using standard SRM analysis on as described in Example 1 using the horse IgG as an internal digestion standard.

Immunoglobulins were isolated by precipitation using a saturated ammonium sulfate solution, followed by trypsin digestion. Peptides were separated on reverse-phase

C18 liquid chromatography (Atlantis T3 3x100 mm) and subjected to MS/MS. Exemplary chromatograms for the SRM analysis monitoring for the peptides for horse IgG constant region, and the heavy chain and light chain peptide from eculizumab are shown in Figure 6. The ability to accurately quantitate the level of infliximab in patient sera was demonstrated by spiking known amounts of infliximab into patient serum and plotting the heavy chain peptide response as a function of drug level (Figure 7).

Example 5 - Comparison with and without horse IgG

Human serum was spiked with 50 μg of infliximab and the concentration was measured using the method of Example 1. Twenty replicates of the same sample were measured using and the data was either normalized to isotopically labeled peptides internal standards or to a peptide from the constant region of the horse immunoglobulin. The coefficient of variation (CV) for each method was determined for each analysis. The CV's of quantitation using the horse constant region was significantly lower (12% versus 34%) for the heavy chain peptide and 8% versus 22% for the light chain peptide) as demonstrated in Table 1.

Example 6 - Rituximab

A list of tryptic peptides unique to the heavy and light chain variable regions were predicted by in silico digestion of Rituximab variable region sequences found in the IMGT database (http://www.imgt.org/3Dstructure-DB). Rituximab (Rituxan, Genentech) was reconstituted to 10 mg/mL in 50 mM ammonium bicarbonate, reduced, alkylated and digested with trypsin (1 :20 enzyme: substrate) at 37°C for 4 hours. Digests were analyzed by IDA LC-ESI-Q-TOFMS; the most abundant peptides matching the in silico list were chosen for subsequent studies. A set of tryptic peptides for the rat heavy chain and light chain were identified.

Rituximab was then spiked into normal human serum at 250 mg/ml. A dilution series was made from the stock. Samples were purified using by precipitation in a saturated ammonium sulfate solution and digested according to Example 1. Identified rituximab tryptic peptides were present in the all spiked samples and no appreciable quantities of the peptides were seen in the normal pooled sera (c.f. Figure 5). The resulting rituximab light chain standard curve is shown in Figure 8. Expected concentration (y-axis; μg/mL) correlated with measured concentration (x-axis; μg/mL).

Table 1. Comparison of the intra-assay CV of a human serum spiked with infliximab using isotopically labeled peptides versus the horse IgG

OTHER EMBODIMENTS

It is to be understood that while the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.

Claims

WHAT IS CLAIMED IS:

1. A method for quantifying a monoclonal antibody therapeutic in a sample, the method comprising:

a) providing a sample comprising a monoclonal antibody therapeutic;

b) adding an internal standard to the sample, wherein the internal standard is a non- isotopically labeled immunoglobulin from a non-human species; and

c) subjecting the sample to a mass spectrometry technique to quantify the monoclonal antibody therapeutic in the sample.

2. The method of claim 1, wherein the method further comprises digesting the

antibodies in the sample prior to step (c).

3. The method of any one of claims 1-2, wherein the sample is purified prior to step (c).

4. The method of any one of claims 1-3, wherein the sample is purified using antibody affinity resin purification.

5. The method of any one of claims 1-4, wherein the wherein the mass spectrometry technique comprises a tandem mass spectrometry (MS/MS) technique.

6. The method of any one of claims 1-5, wherein the mass spectrometry technique

comprises an LC-MS/MS technique.

7. A method for quantifying a monoclonal antibody therapeutic in a sample, the method comprising:

a) providing a sample comprising a monoclonal antibody therapeutic;

b) adding an internal standard to the sample, wherein the internal standard is a non- human IgG antibody; and c) subjecting the sample to a LC-MS/MS mass spectrometry technique comprising monitoring the non-human IgG antibody constant region to quantify the monoclonal antibody therapeutic in the sample.

8. The method of claim 7, wherein the method further comprises digesting the

antibodies in the sample prior to step (c).

9. The method of claim 8, wherein the non-human IgG antibody is a horse IgG.

10. The method of any one of claims 1-9, wherein the mass spectrometry technique comprises a liquid chromatography electrospray ionization coupled to a quadrupole mass spectrometry (ESI Triple Quad MS) technique.

11. The method of any one of claims 1-10, wherein the mass spectrometry technique comprises the use of positive ion mode.

12. The method of any one of claims 1-11, wherein the mass spectrometry technique comprises selective reaction monitoring (SRM) analysis.

13. The method of any one of claims 1-12, wherein the SRM analysis comprises

monitoring the horse IgG constant region.

14. The method of any one of claims 1-13, wherein the monoclonal antibody therapeutic light chains are decoupled from the monoclonal antibody therapeutic heavy chains prior to step (c).

15. The method of any one of claims 1-14, wherein quantifying the monoclonal antibody therapeutic in the sample comprises measuring the variable region peptide of the monoclonal antibody therapeutic.

16. The method of any one of claims 1-15, wherein the sample is a biological sample.

17. The method of claim 16, wherein the biological sample is a whole blood sample, serum sample, saliva sample, plasma sample, or urine sample.

18. The method of claim 16 or 17, wherein the biological sample is a serum sample.

19. A method of monitoring a treatment of a disorder in a subject, wherein the disorder is treated with a monoclonal antibody therapeutic, the method comprising:

a) providing a first sample of the subject during treatment;

c) subjecting the first and second sample to a mass spectrometry technique

d) quantifying the human monoclonal antibody therapeutic in the first and second sample; and

e) comparing the amounts from the first and second sample.

20. The method of any one of claims 1-19, wherein the monoclonal antibody therapeutic is selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituximab and adalimumab.

21. The method of any one of claims 1-20, wherein the monoclonal antibody therapeutic is infliximab.

22. A method for quantifying a monoclonal antibody therapeutic in a human serum

sample, the method comprising: a) providing a human serum sample comprising a monoclonal antibody therapeutic selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituxumab and adalimumab;

b) adding an internal standard to the sample, wherein the internal standard is a horse IgG;

c) digesting the antibodies, wherein the digesting comprises trypsin digestion; and d) subjecting the sample to a LC-MS/MS mass spectrometry technique to quantify the monoclonal antibody therapeutic in the sample.

23. A method for quantifying a monoclonal antibody therapeutic in a human serum

sample, the method comprising:

a) providing a human serum sample comprising a monoclonal antibody therapeutic selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituxumab and adalimumab;

c) purifying the sample;

d) digesting the antibodies present, wherein the digesting comprises trypsin digestion; and

e) subjecting the sample to a LC-MS/MS mass spectrometry technique to quantify the human monoclonal antibody therapeutic in the sample.

24. A method for quantifying a monoclonal antibody therapeutic in a human serum

sample, the method comprising:

a) providing a human serum sample comprising a monoclonal antibody therapeutic selected from the group consisting of: infliximab, alemtuzumab, and adalimumab; b) adding an internal standard to the sample, wherein the internal standard is a horse IgG;

c) purifying the sample; d) digesting the antibodies present, wherein the digesting comprises trypsin digestion; and

e) subjecting the sample to a LC-MS/MS mass spectrometry technique to quantify the monoclonal antibody therapeutic, wherein the quantifying the antibody therapeutic comprises measuring the variable region of the antibody therapeutic in the sample.

25. A method for quantifying infliximab in a human serum sample, the method

comprising:

a) providing a human serum sample comprising infliximab;

c) purifying the sample using antibody affinity resin purification;

e) subjecting the sample to a LC-MS/MS mass spectrometry technique to quantify infliximab in the sample.

26. A method for quantifying infliximab in a human serum sample, the method

comprising:

a) providing a sample comprising a monoclonal antibody therapeutic, wherein the sample is a human serum sample and the monoclonal antibody therapeutic is infliximab;

c) purifying the sample using antibody affinity resin purification;

e) subjecting the sample to a LC-ESI TRIPLE QUAD MS mass spectrometry technique to quantify infliximab in the sample.

27. A method for quantifying infliximab in a sample, the method comprising:

a) providing a sample comprising infliximab;

c) purifying the sample using antibody affinity resin purification;

e) subjecting the sample to a LC-ESI TRIPLE QUAD MS mass spectrometry technique to quantify infliximab in the sample by measuring the horse IgG constant region and the variable region of infliximab.

28. A method of monitoring a treatment of a disorder in a subject being treated with a monoclonal antibody therapeutic selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituxumab and adalimumab, the method comprising: a) providing a first sample of the subject during treatment;

c) subjecting the first and second sample to a LC-MS/MS mass spectrometry

technique comprising an internal standard to obtain a mass spectrum of the sample, wherein the internal standard is a horse IgG;

e) comparing the amounts of monoclonal antibody therapeutic from the first and second sample.

29. A method of monitoring a treatment of a disorder in a subject being treated with a monoclonal antibody therapeutic selected from the group consisting of: infliximab, alemtuzumab, eculizumab, rituxumab and adalimumab, the method comprising: a) providing a first sample of the subject during treatment, wherein the first sample is a human serum sample;

b) providing a second sample of the subject on a subsequent treatment or after treatment, wherein the second sample is a human serum sample;

c) subjecting the first and second sample to a LC-MS/MS mass spectrometry

30. A method of monitoring a treatment of a disorder in a subject being treated with infliximab, the method comprising:

a) providing a first human serum sample of the subject during treatment;

b) providing a second human serum sample of the subject on a subsequent

treatment or after treatment;

c) subjecting the first and second sample to a LC-MS/MS mass spectrometry

d) quantifying infliximab in the first and second sample; and

e) comparing the amounts of infliximab from the first and second sample.

31. A method of monitoring a treatment of a disorder in a subject being treated with infliximab, the method comprising:

a) providing a first human serum sample of the subject during treatment;

b) providing a second human serum sample of the subject on a subsequent treatment or after treatment; c) subjecting the first and second sample to a LC-MS/MS mass spectrometry technique comprising an internal standard to obtain a mass spectrum of the sample, wherein the internal standard is a horse IgG;

d) quantifying infliximab in the first and second sample, wherein the quantifying comprises measuring the horse IgG constant region and the variable region of infliximab; and

e) comparing the amounts of infliximab from the first and second sample.