WO2015185514A1 - A dominant mutation in the tdm gene leading to diplogametes production in plants - Google Patents

A dominant mutation in the tdm gene leading to diplogametes production in plants Download PDF

Info

Publication number
WO2015185514A1
WO2015185514A1 PCT/EP2015/062174 EP2015062174W WO2015185514A1 WO 2015185514 A1 WO2015185514 A1 WO 2015185514A1 EP 2015062174 W EP2015062174 W EP 2015062174W WO 2015185514 A1 WO2015185514 A1 WO 2015185514A1
Authority
WO
WIPO (PCT)
Prior art keywords
protein
plant
tdm
gametes
mutation
Prior art date
Application number
PCT/EP2015/062174
Other languages
French (fr)
Inventor
Raphaël MERCIER
Marta CIFUENTES
Laurence Cromer
Original Assignee
Institut National De La Recherche Agronomique
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Institut National De La Recherche Agronomique filed Critical Institut National De La Recherche Agronomique
Priority to BR112016025103-2A priority Critical patent/BR112016025103A2/en
Priority to EP15725640.5A priority patent/EP3149175A1/en
Priority to CN201580023921.2A priority patent/CN106661589A/en
Priority to JP2016567071A priority patent/JP2017520240A/en
Priority to US15/308,807 priority patent/US10674686B2/en
Publication of WO2015185514A1 publication Critical patent/WO2015185514A1/en

Links

Classifications

    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H1/00Processes for modifying genotypes ; Plants characterised by associated natural traits
    • A01H1/06Processes for producing mutations, e.g. treatment with chemicals or with radiation
    • A01H1/08Methods for producing changes in chromosome number
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H1/00Processes for modifying genotypes ; Plants characterised by associated natural traits
    • A01H1/02Methods or apparatus for hybridisation; Artificial pollination ; Fertility
    • A01H1/022Genic fertility modification, e.g. apomixis
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H4/00Plant reproduction by tissue culture techniques ; Tissue culture techniques therefor
    • A01H4/008Methods for regeneration to complete plants
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/415Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8216Methods for controlling, regulating or enhancing expression of transgenes in plant cells
    • C12N15/8218Antisense, co-suppression, viral induced gene silencing [VIGS], post-transcriptional induced gene silencing [PTGS]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8287Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for fertility modification, e.g. apomixis

Definitions

  • the invention relates to a dominant mutation in the TDM gene leading to the production of 2n gametes in plants, to the plants comprising said mutation, and to their use in plant breeding.
  • the invention relates also to plants in which the dominant mutation in the TDM gene is combined with the inactivation of a gene involved in meiotic recombination in plants and a gene involved in the monopolar orientation of the kinetochores during meiosis. These plants which produce apomeiotic gametes are also useful in plant breeding.
  • Meiosis is a key step in the life cycle of sexually reproducing eukaryotes such as the majority of flowering plants.
  • meiosis I homologous chromosomes recombine and are separated into two cell positions, each of them comprising one entire haploid content of chromosomes.
  • meiosis II the two sets of chromosomes resulting from meiosis I further divide, and the sister chromatids segregate. The four spores resulting from this division are thus haploid (n) and carry recombined genetic information.
  • chromosomes replicate and sister chromatids segregate to generate daughter cells that are diploid (2n) and genetically identical to the initial cell.
  • Abnormal gametes resulting from anomalies during meiosis have been shown to be useful for the genetic improvement of several plants of interest, including crops (for review, cf. for instance RAMANNA & JACOB SEN, Euphytica 2003, 133, 3-18,).
  • 2n and apomeiotic gametes are useful for producing polyploids plants, or for crossing plants of different ploidy level, for instance tetraploid crop plants and their diploid wild relatives, in order to use their genetic diversity in plant breeding programs. They can also be used in methods of genetic mapping.
  • Apomeiotic gametes are also of interest for the production of apomictic plants, i.e.
  • 2n gametes are gametes having the somatic chromosome number rather than the gametophytic chromosome number.
  • the abnormalities leading to 2n gametes formation include in particular abnormal cytokinesis, the skip of the first or second meiotic division, or abnormal spindle geometry (for review cf. Veilleux, Plant Breeding Reviews, 1985, 3, 252-288, or Bretagnolle & Thompson, New Phytologist, 1995, 129, 1 -22). These abnormalities lead to different classes of unreduced gametes.
  • Apomeiotic gametes are gametes which are genetically identical to the initial cell, retaining all parent's genetic information. Apomeiotic gametes production is one of the key components of apomixis (Bicknell & Koltunow, Plant Cell, 2004, 16, S228-45). Although, over 400 species of plant are apomictic, these include few crop species. Furthermore, attempts to introduce this trait by crossing have failed ("The Flowering of Apomixis: From Mechanisms to Genetic Engineering", 2001 ; Editor: Savidan et al ; Publisher: CIMMYT, IRD, European Commission DG VI (FAIR), MEXICO, 2001. Spillane et al, Sexual Plant Reproduction, 2001, 14, 179-187).
  • AtPSl ⁇ Arabidopsis thaliana PARALLEL SPINDLES generates diploid male spores, giving rise to viable diploid pollen grains with recombined genetic information and to spontaneous triploid plants in the progeny (WO 2010/004431 ; d'Erfurth et al., PLoS Genet., 2008, 4, el 000274).
  • TAM ⁇ TARDY ASYNCHRONOUS MEIOSIS also known as CYCA1;2
  • OSD1 OMISSION OF SECOND DIVISION
  • SPOll-1 encodes a protein necessary for efficient meiotic recombination in plants, and whose inhibition eliminates recombination and pairing (Grelon et al , Embo J , 2001, 20, 589-600), and REC8 (At2g47980) encodes a protein necessary for the monopolar orientation of the kinetochores during meiosis (Chelysheva et al , J. Cell. Sci. , 2005, 1 18, 4621-32), and whose inhibition modifies chromatid segregation.
  • the Atspoll-1 mutant undergoes an unbalanced first division followed by a second division leading to unbalanced spores and sterility.
  • Atspoll- 1/Atrec8 double mutant undergoes a mitotic-like division instead of a normal first meiotic division, followed by an unbalanced second division leading to unbalanced spores and sterility (Chelysheva et al. , J. Cell. Sci. , 2005, 1 18, 4621-32).
  • the osdl/spol l-l/rec8 mutant is named MiMe for Mitosis instead of Meiosis (d'Erfuth et al , PLoS Biol, 2009, 7, el 000124 and WO 2010/079432).
  • the spores and gametes obtained from the MiMe mutant are genetically identical to the initial cell.
  • the TDM (THREE-DIVISION MUTANT) gene also designated as TDM1, MS5 (PROTEIN MALE STERILE 5) or POLLENLESS 3, encodes a protein which belongs to a small protein family conserved in plants.
  • the sequence of the TDM gene of Arabidopsis thaliana is available in the TAIR database under the accession number At4g20900, or in the GenBank database under the accession number NC_003075.7. It encodes a protein of 434 amino acids (aa) whose sequence is represented in the enclosed sequence listing as SEQ ID NO: 1.
  • the TDM gene is described as required at the end of meiosis to exit meiosis II.
  • TDM mutation leads to formation of polyads and male sterility caused by entry into an aberrant third meiotic division after normal meiosis I and II.
  • the tdm mutants were shown to carry a mutation resulting in a gene which encodes a truncated TDM protein lacking 305 or 1 12 amino acids at its C-terminus (Bulankova et al , The Plant Cell, 2010, 22, 3791-3803; Cromer et al, PLoS Genet. , 2012, 8, el0028652012; Glover et al, The Plant Journal, 1998, 15, 345-356; Ross et al, Chrom. Res., 1997, 5, 551-559; WO/9730581).
  • the inventors have identified dominant mutations in the TDM gene which lead to the premature exit from meiosis before meiosis II and consequently to the production of diploid male and female SDR gametes and diploids spores with recombined genetic information.
  • they have shown that the introduction of a dominant mutation in the TDM gene of a spoll-1 rec8 double mutant results in a MiMe mutant.
  • the inventors have thus identified another gene implicated in the formation of 2n and apomeotic gametes in plants.
  • the invention thus provides a method for obtaining a plant producing
  • said method comprises providing a plant comprising a dominant mutation within a gene, herein designated as TDM gene, coding for a protein designated herein as TDM protein,
  • said protein has at least 75 % sequence identity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 when said plant is Brassica spp. or at least 30 % sequence identity with said residues when said plant is different from Brassica spp, and the 60 first amino acids of said protein comprise a motif X1X 2 X3 , wherein Xj is a Threonine (T), X 2 is a Proline (P), and X 3 is a Proline (P) or a Glutamine (Q), herein designated as TPP/Q motif, and
  • TDM gene and protein sequences are available in the public database, such as with no limitations the Plaza databank (http://bioinformatics.psb.ugent.be/plaza/) and the phytozome web portal http://www.phytozorne.net/ (phytosome v9.1).
  • the protein sequence identities for the TDM proteins are calculated on residues 1 to 286 of SEQ ID NO: 1, after sequence alignment using T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee): the percentage identity is obtained from this alignment using Bioedit 7.2.5 (Hall, T.A., 1999. BioEdit: a user- friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 :95-98).
  • Each species has one or two TDM genes, usually one (figures 1 and 2 and Table I).
  • the TDM protein consists of about 400 to about 850 amino acids, depending on the species (figure 1).
  • the first half of the TDM proteins is conserved as shown in the alignment of TDM proteins from various angiosperm species presented in figure 1.
  • the 60 first amino acids of all TDM proteins comprise a conserved TPP/Q motif (figure 1).
  • TDM proteins sequence identity The percentage sequence identity of the TDM proteins from various angiosperm species with residues 1 to 286 of the TDM protein of SEQ ID NO: 1 were calculated after multiple sequence alignment using T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee). The identity matrix was obtained from this alignment using Bioedit 7.2.5 (Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 :95-98). The results are presented in Table I, below. Table I: TDM proteins sequence identity
  • a sequence having at least 30 % sequence identity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 has at least 50 % sequence similarity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1. Therefore the TDM protein of plants other than Brassica spp. are alternatively defined as having at least 50 % sequence similarity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 and comprising a TPP/Q motif in the 60 first amino acids of the protein.
  • the SDR 2n gametes produced according to the invention are useful in all the usual applications of 2n gametes, for instance for producing polyploid plants, or to allow crosses between plants of different ploidy level. They can also be useful in methods of genetic mapping, for instance the method of "Reverse progeny mapping” disclosed in WO 2006/094774.
  • said protein has at least 35%, and by order of increasing preference, at least 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98%) sequence identity with the TDM protein of SEQ ID NO: 1, when said plant is different from Brassica spp. or at least 80 % and by order of increasing preference, at least 85, 90, 95 or 98% sequence identity with the TDM protein of SEQ ID NO: 1, when said plant is Brassica spp.
  • said TPP/Q motif is situated in a region of said protein which is that situated from positions 16-18 of SEQ ID NO: 1.
  • said dominant mutation is within an allele of a TDM gene or a TDM transgene, wherein the TDM gene or transgene is from any plant species, such as for example those mentioned in Table I. Therefore, the plant able to produce SDR 2n gametes is obtained by targeted or random mutagenesis of the TDM gene or by genetic transformation .
  • said method comprises:
  • Mutagenesis of the TDM gene can be targeted or at random. Random mutagenesis, for instance through EMS mutagenesis, is followed by screening of the mutants within the desired gene. Methods for high throughput mutagenesis and screening are available in the art. By way of example, one can mention TILLING (Targeting Induced Local Lesions IN Genomes, described by McCallum et al, Plant Physiology, 2000, 123, 439-442). Targeted mutagenesis is performed using standard techniques which are known in the art and use homologous recombination, preferably in combination with a nuclease such as for example a TALEN or CRISPR.
  • TILLING Targeting Induced Local Lesions IN Genomes, described by McCallum et al, Plant Physiology, 2000, 123, 439-442
  • Targeted mutagenesis is performed using standard techniques which are known in the art and use homologous recombination, preferably in combination with a nuclease such
  • said plant is a transgenic plant, and said method comprises:
  • the DNA construct comprises a TDM gene that can be either from the same species as the plant in which it is introduced or from a different one.
  • those resulting in the ability to produce SDR 2n gametes can be identified on the basis of the phenotypic characteristics of the plants which are heterozygous for this mutation: these plants can form at least 5%, preferably at least 10%, more preferably at least 20%, still more preferably at least 50 %, and up to 100% of dyads as a product of meiosis.
  • dominant mutations within the TDM gene resulting in the ability of the mutant or transgenic plant to produce SDR 2n gametes can be identified by their ability to restore the fertility of A.
  • Thaliana spoll/rec8 double mutants are used for the screening of dominant mutations, which are then introduced into a plant of interest.
  • said dominant mutation comprises or consists of the mutation of at least one residue of the conserved TPP/Q motif.
  • the mutation may be a substitution, an insertion or a deletion, preferably a substitution or a deletion.
  • said dominant mutation comprises or consists of the mutation of the T residue and/or its adjacent P residue.
  • TP is a potential phosphorylation site.
  • the examples of the present application demonstrate that the mutation of the T16 or PI 7 residue is able to dominantly confer premature meiotic exit. Without wishing to be bound by theory, the inventors believe that in view of these results, TDM is regulated by phosphorylation to ensure the meiosis I to meiosis II transition.
  • the mutation is advantageously a mutation which abrogates phosphorylation of the T residue of said motif i.e., a mutation which disrupts the TP phosphorylation site.
  • Said mutation is advantageously a substitution of said T and/or P residue(s) with a different residue, for example T is substituted with A and P is sub- stituted with L.
  • said mutation is a deletion of the T and P residues, and eventually additional residues flanking said T and/or P residues, such as for example the deletion of 1 to 10, preferably 1 to 5, even more preferably 1 or 2 residues.
  • Another aspect of the present invention relates to a DNA construct comprising a TDM gene having said dominant mutation resulting in the ability of the mutant/transgenic plant to produce SDR 2n gametes, as defined above.
  • the TDM gene can be either from the same species as the plant in which it is introduced or from a different one.
  • the DNA construct comprises the TDM gene in expressible form.
  • the TDM gene is placed under transcriptional control of a promoter functional in a plant cell.
  • the promoter may be a TDM gene promoter such as the endogenous promoter of said TDM gene or another promoter which is functional in plant.
  • promoters which are active in most tissues and cells and under most environmental conditions, as well as tissue-specific or cell-specific promoters which are active only or mainly in certain tissues or certain cell types, and inducible promoters that are activated by physical or chemical stimuli, such as those resulting from nematode infection.
  • the promoter is chosen so as to be functional in meioeytes.
  • Non-limitative examples of constitutive promoters that are commonly used in plant cells are the cauliflower mosaic virus (CaMV) 35S promoter, the Nos promoter, the rubisco promoter, the Cassava vein Mosaic Virus (CsVMV) promoter.
  • Organ or tissue specific promoters that can be used in the present invention include in particular promoters able to confer meiosis-associated expression, such as the DMC1 promoter ( LIMYU & JONES, Plant J, 1997, 1 1, 1-14).
  • the DNA constructs of the invention generally also include a transcriptional terminator (for instance the 35S transcriptional terminator, the nopaline synthase (Nos) transcriptional terminator or a TDM gene terminator).
  • a transcriptional terminator for instance the 35S transcriptional terminator, the nopaline synthase (Nos) transcriptional terminator or a TDM gene terminator.
  • the invention also includes recombinant vectors containing a DNA construct of the invention.
  • said recombinant vectors also include one or more marker genes, which allow for selection of transformed hosts.
  • suitable vectors and the methods for inserting DNA constructs therein are well known to persons of ordinary skill in the art.
  • the choice of the vector depends on the intended host and on the intended method of transformation of said host.
  • a variety of methods for genetic transformation of plant cells or plants are available in the art for many plant species, dicotyledons or monocotyledons.
  • virus mediated transformation transformation by microinjection, by electroporation, microprojectile mediated transformation, Agrobacterium mediated transformation, and the like.
  • the invention also provides a host cell comprising a recombinant DNA construct of the invention.
  • Said host cell can be a prokaryotic cell, for instance an Agrobacterium cell, or a eukaryotic cell, for instance a plant cell genetically transformed by a DNA construct of the invention.
  • the construct may be transiently expressed; it can also be incorporated in a stable extrachromosomal replicon, or integrated in the chromosome.
  • the inventors have further found that by combining the dominant mutation in the TDM mutation, with the inactivation of two genes, one which is essential for meiotic recombination initiation and is selected among SPOll-1, SPOll- 2, PRDJ, PRD2 (AT5G57880), PRD3/PAIR1 and DFO (AT1G07060) and the other one which is REC8, results in a MiMe mutant producing apomeiotic gametes.
  • the apomeiotic gametes produced by the MiMe mutant can be used, in the same way as the SDR 2n gametes, for producing polyploids plants, or for crossing plants of different ploidy level. They are also of interest for the production of apomictic plants, i. e. plants which are able to form seeds from the maternal tissues of the ovule, resulting in progeny that are genetic clones of the maternal parent.
  • a further object of the present invention is thus a method for obtaining a plant producing apomeiotic gametes, wherein said method comprises:
  • SPOl 1-1 protein a protein designated as SPOl 1-1 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-1 protein having the sequence accession number Q9M4A2 in the SwissProt database, corresponding to SEQ ID NO: 29 in the enclosed sequence listing;
  • SPOl 1-2 protein a protein designated as SPOl 1-2 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-2 protein having the sequence accession number Q9M4A2 in the SwissProt database, corresponding to SEQ ID NO: 30 in the enclosed sequence listing;
  • PRD1 protein a protein designated as PRD1 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65,
  • sequence identity 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD1 protein having the sequence accession number ABQ 12642 in the GenBank database, corresponding to SEQ ID NO: 31 in the enclosed sequence listing;
  • PRD2 protein a protein designated as PRD2 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD2 protein having the sequence accession number AT5G57880 in the Plaza databank, corresponding to SEQ ID NO: 32 in the enclosed sequence listing;
  • PAIR1 protein a protein designated as PAIR1 protein, wherein said protein has at least 30%, and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PAIR1 protein having the sequence accession number NP_171675 in the GenBank database, corresponding to SEQ ID NO: 33 in the enclosed sequence listing;
  • DFO protein a protein designated as DFO protein, wherein said protein has at least 30%), and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the DFO protein having the sequence accession number AT1 G07060 in the in the Plaza databank, corresponding to SEQ ID NO: 34 in the enclosed sequence listing; and
  • REC8 protein inhibiting in said plant a second protein designated as REC8 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 45%, and by order of increasing preference, at least, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98%) sequence similarity with the REC8 protein having the sequence accession number NP_196168 in the GenBank database, corresponding to SEQ ID NO: 35 in the enclosed sequence listing.
  • the protein sequence identity and similarity values provided herein for the SPOl l-1 , SPOl l-2, PRD1 , PRD2, DFO, PAIR1, or REC8 proteins are calculated using the BLASTP program under default parameters. Similarity calculations are performed using the scoring matrix BLOSUM62.
  • PRD2, PAIR1, DFO or Rec8 proteins can be obtained either by abolishing, blocking, or decreasing their function, or advantageously, by preventing or down-regulating the expression of the corresponding genes.
  • the SPOl l-1, SPOl l-2, PRD1, PRD2, DFO, PAIR1, and Rec8 proteins, and the inhibition of said proteins are disclosed in details in the Application WO 2010/00431.
  • inhibition of said protein can be obtained by mutagenesis of the corresponding gene or of its promoter, and selection of the mutants having partially or totally lost the activity of said protein. Said inhibition is disclosed on page 5, beginning of last paragraph to page 6, end of 4 th paragraph and page 6, last paragraph of WO 2010/00431 which are incorporated herein by reference.
  • the inhibition of the target protein is obtained by silencing of the corresponding gene.
  • Such an inhibition is disclosed on page 7, beginning of 4 th paragraph to page 9, end of paragraph before last and page 10, first three paragraphs of WO 2010/00431 which are incorporated herein by reference.
  • said method comprises:
  • TDM gene resulting in the ability to produce SDR 2n gametes, said plant being heterozygous for this mutation
  • steps a) b) and c) crossing the plants of steps a) b) and c) in order to obtain a plant having a dominant mutation within an allele of a TDM gene, a mutation within an allele of a gene selected among the SPOll-1, SPOll-2, PRD1, PRD2, DFO or PAIR1 gene, and a mutation within an allele of the REC8 gene, said plant being heterozygous for each mutation;
  • step f) self-fertilizing the plant of step e) in order to obtain a plant homozygous for the mutation within the TDM gene, for the mutation within the gene selected among the SPOll-1, SPOll-2, PRDI, PRD2, DFO or PAIRl gene, and for the mutation within the REC8 gene.
  • said plant is a transgenic plant, and said method comprises:
  • the expression of a DNA construct comprising a dominant mutation in a TDM gene provides to said transgenic plant the ability to produce 2n SDR gametes.
  • the co-expression of a DNA construct gene, comprising a dominant mutation in a T gene, a DNA construct targeting a gene selected among SPOll-1, SPOll-2, PRDI, PRD2, DFO and PAIRl, and a DNA construct targeting the REC8 gene results in a down regulation of the proteins encoded by these three genes and provides to said transgenic plant the ability to produce apomeiotic gametes.
  • the invention also encompasses plants able to produce SDR 2n or apomeiotic gametes, obtainable by the methods of the invention.
  • This also includes plants genetically transformed by at least one DNA construct of the invention.
  • said plants are transgenic plants, wherein said construct is contained in a transgene integrated in the plant genome, so that it is passed onto successive plant generations.
  • the invention also encompasses a method for producing SDR 2n gametes, wherein said method comprises cultivating a plant obtainable by a method of the invention and recovering the gametes produced by said plant.
  • said gametes comprises at least 10%, more preferably at least 20%, and by order of increasing preference, at least 30%, 40%, 50%, 60 % , 70%, 80 %, or 90 % of viable 2n gametes.
  • the invention also encompasses a method for producing apomeiotic gametes, wherein said method comprises cultivating a plant obtainable by a method of the invention and recovering the gametes produced by said plant.
  • said gametes comprises at least 10%, more preferably at least 20%, and by order of increasing preference, at least 30%, 40%, 50%, or 60 %, 70%, 80 %, or 90 % of viable apomeiotic gametes.
  • the present invention applies to a broad range of monocot- or dicotyledon plants of agronomical interest.
  • agronomical interest By way of non-limitative examples, one can mention potato, rice, wheat, maize, tomato, cucumbers, alfalfa, sugar cane, sweet potato, manioc, clover, soybean, ray-grass, banana, melon, watermelon, cotton or ornamental plants such as roses, lilies, tulips, and narcissus.
  • - Figure 1 represents alignment of TDM proteins from various angiosperm species. Sequences were aligned with T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee). The sequence alignment was edited with BioEdit. Only the first half of the sequences which is conserved in TDM proteins is shown. The residues showing more than 80 % identity in the TDM proteins which are aligned are shaded. The conserved region comprising the TPP/Q motif is boxed.
  • - Figure 2 represents the phylogenetic tree of TDM proteins from various angiosperms, TDM_likel proteins from Brassicales and TDM-like proteins from Arabidopsis thaliana and Brachypodium distachyon.
  • Pv Phaseolus vulgaris.
  • VV litis vinifera.
  • Aq Aquilegia caerulea.
  • OS Oryza sativa japonica.
  • OSINDICA Oryza sativa indica.
  • BD Brachypodium distachyon.
  • SB Sorghum bicolor.
  • ZM Zea mays.
  • Si Setaria italica.
  • FIG. 3 shows that spoll-1 rec8 (s)-40 mutant produces dyads and is tetraploid.
  • a to C Male meiotic products stained by toluidine blue.
  • A Wild type produces tetrads of spores.
  • B spoll-1 rec8 produces unbalanced polyads of spores.
  • C spoll-1 rec8 (s)-40 produces dyads of spores.
  • D to F Mitotic caryotype.
  • D Wild type is diploid, having ten chromosomes aligned on mitotic metaphase plates.
  • E spoll-1 rec8 is diploid.
  • FIG. 4 illustrates meiotic products of TDM-P17L, ⁇ - ⁇ 16 ⁇ and TDM-A14-19.
  • - Figure 5 illustrates meiotic chromosome spreads in wild type, spoil -1 rec8, TDM-P17 and spoll-1 rec8 TDM-P17 plants.
  • Arabidopsis plants were cultivated in greenhouse as previously described (Vignard et al , PLoS Genet. , 2007, 3, 1894-1906) or in vitro on Arabidopsis medium, as previously described (Estelle and Somerville, Mol. Genet. , 1987, 206, 200-206) at 21 °C, under a 16-h to 18-h photoperiod and 70% relative humidity.
  • tdm-3 plants were genotyped as described in Cromer et al., PLoS Genet., 2012, 8, el002865.
  • EMS mutagenesis was performed as previously described (Crismani et al, Science, 2012, 336, 1588-1590). Whole genome sequencing was done by HigSeqTM 2000 (Illumina). A list of SNPs was generated compared to the reference genome of Arabidopsis thaliana TAIR10 (cultivar Columbia).
  • TDM genomic fragment was amplified by PCR using TDM U (5'- GACATCGGC ACTTGCTTAGAG-3 '; SEQ ID NO: 36) and TDM L (5'- GCGATATAGCTCCC ACTGGTT-3 ' ; SEQ ID NO: 37).
  • the amplification covered 986 nucleotides before the ATG and 537 nucleotides after the stop codon.
  • the PCR product was cloned, by GatewayTM technology (Invitrogen), into the pDONR207TM vector (Invitrogen), to create pENTR-TDM, on which directed mutagenesis was performed using the Stratagene QuickChangeTM Site-Directed Mutagenesis Kit, according to the manufacturer's instructions.
  • the mutagenic primers used to generate mutated version of TDM were SEQ ID NO: 38 to 41 :
  • - TDM-T16A 5 '-CTCC ACCTGG AGTTTACTATGCCCCGCCGCCGGCG AGA-3 ' ;
  • -TDM- ⁇ 14-19 5' -CC ACCTGGAGTTGCGAGA ACAAGTGATC ATGTGGC-3 ' ; and their respective reverse complementary primers.
  • an LR recombination reaction was performed with the binary vector for the GatewayTM system, pGWBl (Nakagawa et al, Journal of Bioscience and Bioengineering. 2007, 104, 34-41).
  • the resulting binary vectors, pTDM, pTDM-P17L, pT16A, and pTDM-Y14A were transformed using the Agrobacterium-mediated floral dip method (Clough, SJ. and Bent A.
  • EXAMPLE 1 A DOMINANT MUTATION IN TDM LEADS TO PREMATURE MEIOTIC EXIT
  • the identified mutations were a splicing site in exon 7 (TAIR10 chrl -.29082522 C>T) and a mutation in the 5'UTR region which introduced an upstream out of frame start codon (TAIR10 chrl :29084174 G>A).
  • a complementation test showed that they were allelic, confirming that the mutations in CYCA1;2 caused the dyad phenotype and the restoration of fertility.
  • the third family (spol lrec8(s)-40) had no mutation in OSDl and CYCA1;2 and is the focus of this study.
  • This mutation would have been phenotypically expressed in the Ml plant leading, in combination with spoll-1 rec8 mutation, to the production of diploid clonal gamete as observed in a spoll-1 rec8 osdl triple mutant (MiMe, d'Erfurth et al , PLoS Biol , 2009, 7, el000124 and WO 2010/079432), hence maintaining heterozygosity of EMS induced mutations from the Ml plant in the tetraploid M2 plants.
  • TDM-P17L a mutation in TDM resulting in an amino acid change
  • This demonstrates that the mutation in TDM is indeed the causal dominant mutation in spol lrec8(s)-40.
  • Analysis of meiotic chromosome spreads in spoil -lrec8 TDM-P17L transformants showed a mitotic-like first division, with 10 univalents aligned at metaphase-I and sister chromatids segregated at anaphase I, and absence of second division (figure 5).
  • the TDM- P17L genomic clone modified the meiotic phenotype of both genotypes by the production of dyads ( Figure 4, Table II).
  • TDM-PI 7Zplants that produced dyads showed a wild type first division and an absence of meiosis II ( figure 5) which caused the formation of 2n gametes, a phenotype reminiscent of the one from osdl and cycal ;2/tam (d'Erfurth et al. , PLoS Biol , 2009, 7, el 000124 and WO 2010/079432; d'Erfurth et al, PLoS Genet. , 2010, 6, el 000989).
  • Ploidy levels were measured among the offspring of TDM-P17L plants (Table III). Among selfed progeny, tetraploids and triploids were found. When TDM-P17L ovules were fertilised with wild-type pollen grains, diploid and triploid plants were isolated (Table III).
  • the tdm-pl 7L dominant mutation confers a similar meiotic defect than the recessive osdlox tarn mutations, leading to the premature exit from meiosis before the second division and consequently to the production of diploid male and female gametes.
  • TDM belongs to a small family of protein conserved in plants. For instance, the Arabidopsis genome contains five other genes showing significant sequence similarity with TDM (Figure 2). These TDM-like genes are of unknown function. The analysis of the protein sequences showed that the causal mutation was in a small domain conserved only in the TDM protein subfamily that contains typically one or two genes per plant species ( Figure 1). The Pro 17 amino acid is absolutely conserved as well as the adjacent Thrl6 amino acid ( Figure 1). This defines a minimum consensus phosphorylation site on the T16.
  • TDM-T16A non phosphorylable one
  • TDM-A14J9 the entire conserved domain
  • TDM-Y14A TDM tyrosine 14
  • TDM-Y14A TDM tyrosine 14

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Molecular Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biomedical Technology (AREA)
  • Zoology (AREA)
  • General Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Botany (AREA)
  • Developmental Biology & Embryology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Environmental Sciences (AREA)
  • Cell Biology (AREA)
  • Microbiology (AREA)
  • Plant Pathology (AREA)
  • Physics & Mathematics (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Medicinal Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Virology (AREA)
  • Breeding Of Plants And Reproduction By Means Of Culturing (AREA)

Abstract

The invention relates to a dominant mutation in the TDM gene leading to the production of 2n gametes in plants, to the plants comprising said mutation, and to their use in plant breeding. The invention relates also to plants in which the dominant mutation in the TDM gene is combined with the inactivation of a gene involved in meiotic recombination in plants and a gene involved in the monopolar orientation of the kinetochores during meiosis. These plants which produce apomeiotic gametes are also useful in plant breeding.

Description

A DOMINANT MUTATION IN THE TDM GENE LEADING TO
DIPLOGAMETES PRODUCTION IN PLANTS
The invention relates to a dominant mutation in the TDM gene leading to the production of 2n gametes in plants, to the plants comprising said mutation, and to their use in plant breeding. The invention relates also to plants in which the dominant mutation in the TDM gene is combined with the inactivation of a gene involved in meiotic recombination in plants and a gene involved in the monopolar orientation of the kinetochores during meiosis. These plants which produce apomeiotic gametes are also useful in plant breeding.
Meiosis is a key step in the life cycle of sexually reproducing eukaryotes such as the majority of flowering plants.
In normal meiosis, chromosomes first duplicate, resulting in pairs of sister chromatids. This round of replication is followed by two rounds of division, known as meiosis I and meiosis II. During meiosis I homologous chromosomes recombine and are separated into two cell compartiments, each of them comprising one entire haploid content of chromosomes. In meiosis II the two sets of chromosomes resulting from meiosis I further divide, and the sister chromatids segregate. The four spores resulting from this division are thus haploid (n) and carry recombined genetic information.
By comparison, during mitosis in diploid cells, chromosomes replicate and sister chromatids segregate to generate daughter cells that are diploid (2n) and genetically identical to the initial cell.
Abnormal gametes resulting from anomalies during meiosis have been shown to be useful for the genetic improvement of several plants of interest, including crops (for review, cf. for instance RAMANNA & JACOB SEN, Euphytica 2003, 133, 3-18,). In particular, 2n and apomeiotic gametes are useful for producing polyploids plants, or for crossing plants of different ploidy level, for instance tetraploid crop plants and their diploid wild relatives, in order to use their genetic diversity in plant breeding programs. They can also be used in methods of genetic mapping. Apomeiotic gametes are also of interest for the production of apomictic plants, i.e. , plants which are able to form seeds from the maternal tissues of the ovule, resulting in progeny that are genetic clones of the maternal parent. 2n gametes (also known as diplogametes) are gametes having the somatic chromosome number rather than the gametophytic chromosome number. The abnormalities leading to 2n gametes formation include in particular abnormal cytokinesis, the skip of the first or second meiotic division, or abnormal spindle geometry (for review cf. Veilleux, Plant Breeding Reviews, 1985, 3, 252-288, or Bretagnolle & Thompson, New Phytologist, 1995, 129, 1 -22). These abnormalities lead to different classes of unreduced gametes. For instance, skipping of the first meiotic division results in First Division Restitution (FDR) gametes, while absence of the second meiotic division results in Second Division Restitution (SDR) gametes. Numerous mutants that are able to produce 2n gametes have been reported in various plant species. However, the mutations involved in the formation of diplogametes in these plants have not been characterized.
Apomeiotic gametes are gametes which are genetically identical to the initial cell, retaining all parent's genetic information. Apomeiotic gametes production is one of the key components of apomixis (Bicknell & Koltunow, Plant Cell, 2004, 16, S228-45). Although, over 400 species of plant are apomictic, these include few crop species. Furthermore, attempts to introduce this trait by crossing have failed ("The Flowering of Apomixis: From Mechanisms to Genetic Engineering", 2001 ; Editor: Savidan et al ; Publisher: CIMMYT, IRD, European Commission DG VI (FAIR), MEXICO, 2001. Spillane et al, Sexual Plant Reproduction, 2001, 14, 179-187).
To date, only a few genes implicated in the formation of 2n or apomeiotic pollen have been identified.
The inactivation of AtPSl {Arabidopsis thaliana PARALLEL SPINDLES) generates diploid male spores, giving rise to viable diploid pollen grains with recombined genetic information and to spontaneous triploid plants in the progeny (WO 2010/004431 ; d'Erfurth et al., PLoS Genet., 2008, 4, el 000274).
The inactivation of TAM {TARDY ASYNCHRONOUS MEIOSIS, also known as CYCA1;2) or of OSD1 (OMISSION OF SECOND DIVISION) leads to a premature exit from meiosis after meiosis I, and thus the production of diploids spores and SDR gametes with recombined genetic information (d'Erfuth et al, PLoS Genet. , 2010, 6, el000989; d'Erfuth et al , PLoS Biol , 2009, 7, el000124; WO 2010/079432). SPOll-1 encodes a protein necessary for efficient meiotic recombination in plants, and whose inhibition eliminates recombination and pairing (Grelon et al , Embo J , 2001, 20, 589-600), and REC8 (At2g47980) encodes a protein necessary for the monopolar orientation of the kinetochores during meiosis (Chelysheva et al , J. Cell. Sci. , 2005, 1 18, 4621-32), and whose inhibition modifies chromatid segregation. The Atspoll-1 mutant undergoes an unbalanced first division followed by a second division leading to unbalanced spores and sterility. The Atspoll- 1/Atrec8 double mutant undergoes a mitotic-like division instead of a normal first meiotic division, followed by an unbalanced second division leading to unbalanced spores and sterility (Chelysheva et al. , J. Cell. Sci. , 2005, 1 18, 4621-32).
In the triple osdl/spol l-l/rec8 mutant, the presence of the spoll-1 and rec8 mutations leads to a mitotic-like first meiotic division and the presence of the osdl mutation prevents the second meiotic division from occurring. Thus meiosis is totally replaced by mitosis without affecting subsequent sexual processes. Thus, the osdl/spol l-l/rec8 mutant is named MiMe for Mitosis instead of Meiosis (d'Erfuth et al , PLoS Biol, 2009, 7, el 000124 and WO 2010/079432). The spores and gametes obtained from the MiMe mutant are genetically identical to the initial cell.
To date, the engineering of plants able to produce 2n or apomeiotic gametes is thus restricted to a limited number of genes.
Therefore, to increase the number of genes which can be modified to produce high frequency of 2n or apomeiotic gametes, there is a need for other genes implicated in the formation of these gametes in plants.
The TDM (THREE-DIVISION MUTANT) gene, also designated as TDM1, MS5 (PROTEIN MALE STERILE 5) or POLLENLESS 3, encodes a protein which belongs to a small protein family conserved in plants. The sequence of the TDM gene of Arabidopsis thaliana is available in the TAIR database under the accession number At4g20900, or in the GenBank database under the accession number NC_003075.7. It encodes a protein of 434 amino acids (aa) whose sequence is represented in the enclosed sequence listing as SEQ ID NO: 1.
The TDM gene is described as required at the end of meiosis to exit meiosis II. TDM mutation leads to formation of polyads and male sterility caused by entry into an aberrant third meiotic division after normal meiosis I and II. The tdm mutants were shown to carry a mutation resulting in a gene which encodes a truncated TDM protein lacking 305 or 1 12 amino acids at its C-terminus (Bulankova et al , The Plant Cell, 2010, 22, 3791-3803; Cromer et al, PLoS Genet. , 2012, 8, el0028652012; Glover et al, The Plant Journal, 1998, 15, 345-356; Ross et al, Chrom. Res., 1997, 5, 551-559; WO/9730581).
In contrast, as shown herein, the inventors have identified dominant mutations in the TDM gene which lead to the premature exit from meiosis before meiosis II and consequently to the production of diploid male and female SDR gametes and diploids spores with recombined genetic information. In addition, they have shown that the introduction of a dominant mutation in the TDM gene of a spoll-1 rec8 double mutant results in a MiMe mutant.
The inventors have thus identified another gene implicated in the formation of 2n and apomeotic gametes in plants.
Compared to the other mutations involved in diplogametes production which are recessive and thus require an additional step of self-fertilizing the primary mutants (heterozygous for the mutation) to obtain plants homozygous for the mutation, this step is not required for the mutation in the TDM gene which is dominant. The primary mutants carrying the dominant mutation in the TDM gene are capable of production 2n gametes.
The invention thus provides a method for obtaining a plant producing
Second Division Restitution (SDR) 2n gametes,
wherein said method comprises providing a plant comprising a dominant mutation within a gene, herein designated as TDM gene, coding for a protein designated herein as TDM protein,
wherein said protein has at least 75 % sequence identity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 when said plant is Brassica spp. or at least 30 % sequence identity with said residues when said plant is different from Brassica spp, and the 60 first amino acids of said protein comprise a motif X1X2X3 , wherein Xj is a Threonine (T), X2 is a Proline (P), and X3 is a Proline (P) or a Glutamine (Q), herein designated as TPP/Q motif, and
wherein said dominant mutation results in the ability of the plant to produce SDR 2n gametes. In the following description, the standard one letter amino acid code is used.
TDM gene and protein sequences are available in the public database, such as with no limitations the Plaza databank (http://bioinformatics.psb.ugent.be/plaza/) and the phytozome web portal http://www.phytozorne.net/ (phytosome v9.1).
The protein sequence identities for the TDM proteins are calculated on residues 1 to 286 of SEQ ID NO: 1, after sequence alignment using T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee): the percentage identity is obtained from this alignment using Bioedit 7.2.5 (Hall, T.A., 1999. BioEdit: a user- friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 :95-98).
Each species has one or two TDM genes, usually one (figures 1 and 2 and Table I). The TDM protein consists of about 400 to about 850 amino acids, depending on the species (figure 1). The first half of the TDM proteins is conserved as shown in the alignment of TDM proteins from various angiosperm species presented in figure 1. In particular, the 60 first amino acids of all TDM proteins comprise a conserved TPP/Q motif (figure 1).
The percentage sequence identity of the TDM proteins from various angiosperm species with residues 1 to 286 of the TDM protein of SEQ ID NO: 1 were calculated after multiple sequence alignment using T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee). The identity matrix was obtained from this alignment using Bioedit 7.2.5 (Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 :95-98). The results are presented in Table I, below. Table I: TDM proteins sequence identity
Figure imgf000007_0001
(http://bioinformatics.psb.ugent.be/plaza/ ) except: Cucumus sativus, Solanum lycopersicum, Aquilegia caerulea, Phaseolus vulgaris, Prunus persica, Gossypium raimondii, Glycine max and Theobroma cacao that come from
http://www.phvtozome.net/ (phytosome v9.1).
A sequence having at least 30 % sequence identity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 has at least 50 % sequence similarity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1. Therefore the TDM protein of plants other than Brassica spp. are alternatively defined as having at least 50 % sequence similarity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 and comprising a TPP/Q motif in the 60 first amino acids of the protein.
The SDR 2n gametes produced according to the invention are useful in all the usual applications of 2n gametes, for instance for producing polyploid plants, or to allow crosses between plants of different ploidy level. They can also be useful in methods of genetic mapping, for instance the method of "Reverse progeny mapping" disclosed in WO 2006/094774.
According to a preferred embodiment of the method for obtaining a plant producing Second Division Restitution 2n gametes, said protein has at least 35%, and by order of increasing preference, at least 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98%) sequence identity with the TDM protein of SEQ ID NO: 1, when said plant is different from Brassica spp. or at least 80 % and by order of increasing preference, at least 85, 90, 95 or 98% sequence identity with the TDM protein of SEQ ID NO: 1, when said plant is Brassica spp. According to another preferred embodiment of the method for obtaining a plant producing Second Division Restitution 2n gametes, said TPP/Q motif is situated in a region of said protein which is that situated from positions 16-18 of SEQ ID NO: 1.
According to the invention, said dominant mutation is within an allele of a TDM gene or a TDM transgene, wherein the TDM gene or transgene is from any plant species, such as for example those mentioned in Table I. Therefore, the plant able to produce SDR 2n gametes is obtained by targeted or random mutagenesis of the TDM gene or by genetic transformation .
According to a preferred embodiment of the method of the invention for obtaining a plant able to produce SDR 2n gametes, said method comprises:
- providing a plant having said dominant mutation within an allele of a TDM gene, said plant being heterozygous or homozygous for this mutation.
Mutagenesis of the TDM gene can be targeted or at random. Random mutagenesis, for instance through EMS mutagenesis, is followed by screening of the mutants within the desired gene. Methods for high throughput mutagenesis and screening are available in the art. By way of example, one can mention TILLING (Targeting Induced Local Lesions IN Genomes, described by McCallum et al, Plant Physiology, 2000, 123, 439-442). Targeted mutagenesis is performed using standard techniques which are known in the art and use homologous recombination, preferably in combination with a nuclease such as for example a TALEN or CRISPR.
According to another preferred embodiment of the method of the invention for providing a plant able to produce SDR 2n gametes, said plant is a transgenic plant, and said method comprises:
a) transforming at least one plant cell with a vector containing a DNA construct comprising a TDM gene having said dominant mutation;
b) cultivating said transformed plant cell in order to regenerate a plant having in its genome a transgene containing said DNA construct.
The DNA construct comprises a TDM gene that can be either from the same species as the plant in which it is introduced or from a different one.
Among the mutations within the TDM gene, those resulting in the ability to produce SDR 2n gametes can be identified on the basis of the phenotypic characteristics of the plants which are heterozygous for this mutation: these plants can form at least 5%, preferably at least 10%, more preferably at least 20%, still more preferably at least 50 %, and up to 100% of dyads as a product of meiosis.
Alternatively, dominant mutations within the TDM gene resulting in the ability of the mutant or transgenic plant to produce SDR 2n gametes can be identified by their ability to restore the fertility of A. Thaliana spoll/rec8 double mutants, wherein fertile spol l/rec8/tdm triple mutants are heterozygous for the TDM mutation, as demonstrated in the examples of the present application A. Thaliana spoll/rec8 double mutants are used for the screening of dominant mutations, which are then introduced into a plant of interest.
According to another preferred embodiment of the method of the invention for obtaining a plant producing Second Division Restitution 2n gametes, said dominant mutation comprises or consists of the mutation of at least one residue of the conserved TPP/Q motif.
The mutation may be a substitution, an insertion or a deletion, preferably a substitution or a deletion.
In a more preferred embodiment, said dominant mutation comprises or consists of the mutation of the T residue and/or its adjacent P residue. TP is a potential phosphorylation site. The examples of the present application demonstrate that the mutation of the T16 or PI 7 residue is able to dominantly confer premature meiotic exit. Without wishing to be bound by theory, the inventors believe that in view of these results, TDM is regulated by phosphorylation to ensure the meiosis I to meiosis II transition.
Therefore, the mutation is advantageously a mutation which abrogates phosphorylation of the T residue of said motif i.e., a mutation which disrupts the TP phosphorylation site.
Said mutation is advantageously a substitution of said T and/or P residue(s) with a different residue, for example T is substituted with A and P is sub- stituted with L. Alternatively, said mutation is a deletion of the T and P residues, and eventually additional residues flanking said T and/or P residues, such as for example the deletion of 1 to 10, preferably 1 to 5, even more preferably 1 or 2 residues.
Another aspect of the present invention relates to a DNA construct comprising a TDM gene having said dominant mutation resulting in the ability of the mutant/transgenic plant to produce SDR 2n gametes, as defined above. The TDM gene can be either from the same species as the plant in which it is introduced or from a different one. The DNA construct comprises the TDM gene in expressible form. Preferably, the TDM gene is placed under transcriptional control of a promoter functional in a plant cell. The promoter may be a TDM gene promoter such as the endogenous promoter of said TDM gene or another promoter which is functional in plant.
A large choice of promoters suitable for expression of heterologous genes in plants is available in the art.
They can be obtained for instance from plants, plant viruses, or bacteria such as Agrobacterium. They include constitutive promoters, i.e. promoters which are active in most tissues and cells and under most environmental conditions, as well as tissue-specific or cell-specific promoters which are active only or mainly in certain tissues or certain cell types, and inducible promoters that are activated by physical or chemical stimuli, such as those resulting from nematode infection. The promoter is chosen so as to be functional in meioeytes. Non-limitative examples of constitutive promoters that are commonly used in plant cells are the cauliflower mosaic virus (CaMV) 35S promoter, the Nos promoter, the rubisco promoter, the Cassava vein Mosaic Virus (CsVMV) promoter.
Organ or tissue specific promoters that can be used in the present invention include in particular promoters able to confer meiosis-associated expression, such as the DMC1 promoter ( LIMYU & JONES, Plant J, 1997, 1 1, 1-14).
The DNA constructs of the invention generally also include a transcriptional terminator (for instance the 35S transcriptional terminator, the nopaline synthase (Nos) transcriptional terminator or a TDM gene terminator).
The invention also includes recombinant vectors containing a DNA construct of the invention. Classically, said recombinant vectors also include one or more marker genes, which allow for selection of transformed hosts.
The selection of suitable vectors and the methods for inserting DNA constructs therein are well known to persons of ordinary skill in the art. The choice of the vector depends on the intended host and on the intended method of transformation of said host. A variety of methods for genetic transformation of plant cells or plants are available in the art for many plant species, dicotyledons or monocotyledons. By way of non-limitative examples, one can mention virus mediated transformation, transformation by microinjection, by electroporation, microprojectile mediated transformation, Agrobacterium mediated transformation, and the like.
The invention also provides a host cell comprising a recombinant DNA construct of the invention. Said host cell can be a prokaryotic cell, for instance an Agrobacterium cell, or a eukaryotic cell, for instance a plant cell genetically transformed by a DNA construct of the invention. The construct may be transiently expressed; it can also be incorporated in a stable extrachromosomal replicon, or integrated in the chromosome.
The inventors have further found that by combining the dominant mutation in the TDM mutation, with the inactivation of two genes, one which is essential for meiotic recombination initiation and is selected among SPOll-1, SPOll- 2, PRDJ, PRD2 (AT5G57880), PRD3/PAIR1 and DFO (AT1G07060) and the other one which is REC8, results in a MiMe mutant producing apomeiotic gametes. The apomeiotic gametes produced by the MiMe mutant can be used, in the same way as the SDR 2n gametes, for producing polyploids plants, or for crossing plants of different ploidy level. They are also of interest for the production of apomictic plants, i. e. plants which are able to form seeds from the maternal tissues of the ovule, resulting in progeny that are genetic clones of the maternal parent.
A further object of the present invention is thus a method for obtaining a plant producing apomeiotic gametes, wherein said method comprises:
a) providing a plant comprising a dominant mutation in a TDM gene as defined above;
b) inhibiting in said plant a first protein involved in initiation of meiotic recombination in plants, said protein being selected among :
- a protein designated as SPOl 1-1 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-1 protein having the sequence accession number Q9M4A2 in the SwissProt database, corresponding to SEQ ID NO: 29 in the enclosed sequence listing;
- a protein designated as SPOl 1-2 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-2 protein having the sequence accession number Q9M4A2 in the SwissProt database, corresponding to SEQ ID NO: 30 in the enclosed sequence listing;
- a protein designated as PRD1 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65,
70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD1 protein having the sequence accession number ABQ 12642 in the GenBank database, corresponding to SEQ ID NO: 31 in the enclosed sequence listing;
- a protein designated as PRD2 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD2 protein having the sequence accession number AT5G57880 in the Plaza databank, corresponding to SEQ ID NO: 32 in the enclosed sequence listing;
- a protein designated as PAIR1 protein, wherein said protein has at least 30%, and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PAIR1 protein having the sequence accession number NP_171675 in the GenBank database, corresponding to SEQ ID NO: 33 in the enclosed sequence listing;
- a protein designated as DFO protein, wherein said protein has at least 30%), and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the DFO protein having the sequence accession number AT1 G07060 in the in the Plaza databank, corresponding to SEQ ID NO: 34 in the enclosed sequence listing; and
c) inhibiting in said plant a second protein designated as REC8 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 45%, and by order of increasing preference, at least, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98%) sequence similarity with the REC8 protein having the sequence accession number NP_196168 in the GenBank database, corresponding to SEQ ID NO: 35 in the enclosed sequence listing.
The protein sequence identity and similarity values provided herein for the SPOl l-1 , SPOl l-2, PRD1 , PRD2, DFO, PAIR1, or REC8 proteins are calculated using the BLASTP program under default parameters. Similarity calculations are performed using the scoring matrix BLOSUM62.
The inhibition of the above mentioned SPOl l-1 , SPOl l-2, PRD1 ,
PRD2, PAIR1, DFO or Rec8 proteins can be obtained either by abolishing, blocking, or decreasing their function, or advantageously, by preventing or down-regulating the expression of the corresponding genes. The SPOl l-1, SPOl l-2, PRD1, PRD2, DFO, PAIR1, and Rec8 proteins, and the inhibition of said proteins are disclosed in details in the Application WO 2010/00431.
By way of example, inhibition of said protein can be obtained by mutagenesis of the corresponding gene or of its promoter, and selection of the mutants having partially or totally lost the activity of said protein. Said inhibition is disclosed on page 5, beginning of last paragraph to page 6, end of 4th paragraph and page 6, last paragraph of WO 2010/00431 which are incorporated herein by reference.
Alternatively, the inhibition of the target protein is obtained by silencing of the corresponding gene. Such an inhibition is disclosed on page 7, beginning of 4th paragraph to page 9, end of paragraph before last and page 10, first three paragraphs of WO 2010/00431 which are incorporated herein by reference.
According to a preferred embodiment of the method of the invention for obtaining a plant able to produce apomeiotic gametes, said method comprises:
a) providing a plant having a dominant mutation within an allele of a
TDM gene resulting in the ability to produce SDR 2n gametes, said plant being heterozygous for this mutation;
b) providing a plant having a mutation within an allele of a gene selected among the SPOll-1, SPOll-2, PRD1, PRD2, DFO, or PAIR! gene resulting in the inhibition of the protein encoded by said allele, said plant being heterozygous for this mutation;
c) providing a plant having a mutation within an allele of the REC8 gene resulting in the inhibition of the protein encoded by said allele, said plant being heterozygous for this mutation;
e) crossing the plants of steps a) b) and c) in order to obtain a plant having a dominant mutation within an allele of a TDM gene, a mutation within an allele of a gene selected among the SPOll-1, SPOll-2, PRD1, PRD2, DFO or PAIR1 gene, and a mutation within an allele of the REC8 gene, said plant being heterozygous for each mutation;
f) self-fertilizing the plant of step e) in order to obtain a plant homozygous for the mutation within the TDM gene, for the mutation within the gene selected among the SPOll-1, SPOll-2, PRDI, PRD2, DFO or PAIRl gene, and for the mutation within the REC8 gene.
According to another preferred embodiment of the method of the invention for obtaining a plant able to produce apomeiotic gametes, said plant is a transgenic plant, and said method comprises:
a) transforming at least one plant cell with a vector containing a DNA construct of the invention comprising a dominant mutation in a TDM gene as defined above, a vector containing a DNA construct targeting a gene selected among SPOll-1, SPOll-2, PRDI, PRD2, DFO and PAIRl, and a vector containing a DNA construct targeting the REC8 gene;
b) cultivating said transformed plant cell in order to regenerate a plant having in its genome transgenes containing said DNA constructs.
The expression of a DNA construct comprising a dominant mutation in a TDM gene, provides to said transgenic plant the ability to produce 2n SDR gametes. The co-expression of a DNA construct gene, comprising a dominant mutation in a T gene, a DNA construct targeting a gene selected among SPOll-1, SPOll-2, PRDI, PRD2, DFO and PAIRl, and a DNA construct targeting the REC8 gene, results in a down regulation of the proteins encoded by these three genes and provides to said transgenic plant the ability to produce apomeiotic gametes.
The invention also encompasses plants able to produce SDR 2n or apomeiotic gametes, obtainable by the methods of the invention.
This includes in particular plants comprising a dominant mutation within a TDM gene as defined above, as well as plants further comprising a first mutation within a gene selected among SPOll-1, SPOll-2, PRDI, PRD2, DFO or PAIRl gene, wherein the SPOl l-1, SPOl l-2, PRDI , PRD2, DFO or PAIRl protein encoded by said gene is inhibited as a result of this mutation; and a second mutation within the REC8 gene, wherein the REC8 protein is inhibited as a result of this mutation
This also includes plants genetically transformed by at least one DNA construct of the invention. Preferably, said plants are transgenic plants, wherein said construct is contained in a transgene integrated in the plant genome, so that it is passed onto successive plant generations. The invention also encompasses a method for producing SDR 2n gametes, wherein said method comprises cultivating a plant obtainable by a method of the invention and recovering the gametes produced by said plant. Preferably said gametes comprises at least 10%, more preferably at least 20%, and by order of increasing preference, at least 30%, 40%, 50%, 60 % , 70%, 80 %, or 90 % of viable 2n gametes.
The invention also encompasses a method for producing apomeiotic gametes, wherein said method comprises cultivating a plant obtainable by a method of the invention and recovering the gametes produced by said plant. Preferably said gametes comprises at least 10%, more preferably at least 20%, and by order of increasing preference, at least 30%, 40%, 50%, or 60 %, 70%, 80 %, or 90 % of viable apomeiotic gametes.
The present invention applies to a broad range of monocot- or dicotyledon plants of agronomical interest. By way of non-limitative examples, one can mention potato, rice, wheat, maize, tomato, cucumbers, alfalfa, sugar cane, sweet potato, manioc, clover, soybean, ray-grass, banana, melon, watermelon, cotton or ornamental plants such as roses, lilies, tulips, and narcissus.
The practice of the present invention will employ, unless otherwise indicated, conventional techniques which are within the skill of the art. Such techniques are explained fully in the literature.
In addition to the above arrangements, the invention also comprises other arrangements, which will emerge from the description which follows, which refers to exemplary embodiments of the subject of the present invention, with reference to the attached drawings in which:
- Figure 1 represents alignment of TDM proteins from various angiosperm species. Sequences were aligned with T-Coffee (v6.85) with default parameters (http://toolkit.tuebingen.mpg.de/t coffee). The sequence alignment was edited with BioEdit. Only the first half of the sequences which is conserved in TDM proteins is shown. The residues showing more than 80 % identity in the TDM proteins which are aligned are shaded. The conserved region comprising the TPP/Q motif is boxed. - Figure 2 represents the phylogenetic tree of TDM proteins from various angiosperms, TDM_likel proteins from Brassicales and TDM-like proteins from Arabidopsis thaliana and Brachypodium distachyon. The analysis was performed on the Phylogeny.fr platform and comprised the following steps. Sequences were aligned with T-Coffee (v6.85) using the following pair-wise alignment methods: the 10 best local alignments (Lalign_pair), an accurate global alignment (slow_pair). After alignment, positions with gap were removed from the alignment. The phylogenetic tree was reconstructed using the maximum likelihood method implemented in the PhyML program (v3.0 aLRT). Proteins of the TDM clade are shown for all species (including TDM-like 1 in Brassicales). More distant TDM paralogues are shown only for Arabidopsis thaliana and Brachypodium distachyon.
At : Arabidopsis thaliana, Al: Arabidopsis lyrata. Bra: Brassica rapa. Sly: Solanum lycopersicum. St: Solanum tuberosum. Csa : Cucumis sativus. Eucgr : Eucalyptus grandis. Cp :Carica papaya. ME : Manihot esculenta. TC : Theobroma cacao. Goraii Gossypium raimondii. FV : Fragaria vesca. Pp : Primus persica. LJ : Lotus japonicus. MT : medicago truncatula. GM : Glycine max. Pv : Phaseolus vulgaris. VV : litis vinifera. Aq : Aquilegia caerulea. OS: Oryza sativa japonica. OSINDICA: Oryza sativa indica. BD: Brachypodium distachyon. SB: Sorghum bicolor. ZM: Zea mays. Si :Setaria italica.
- Figure 3 shows that spoll-1 rec8 (s)-40 mutant produces dyads and is tetraploid. (A to C). Male meiotic products stained by toluidine blue. (A) Wild type produces tetrads of spores. (B) spoll-1 rec8 produces unbalanced polyads of spores. (C) spoll-1 rec8 (s)-40 produces dyads of spores. (D to F) Mitotic caryotype. (D) Wild type is diploid, having ten chromosomes aligned on mitotic metaphase plates. (E) spoll-1 rec8 is diploid. (F) spoll-1 rec8 (s)-40 is tetraploid, having 20 chromosomes aligned on mitotic metaphase plates. Scale bar = 10μΜ.
- Figure 4 illustrates meiotic products of TDM-P17L, ΎΌΜ-Τ16Α and TDM-A14-19. (A) spoll-1 rec8 mutants transformed with TDM-P17L. Wild type plants transformed by (B) TDM-P17L, (C) TDM-T16A or (D) TDM-Δ 14-19. Dyads of spores are observed, compared to tetrads in wild type (figure 3A) and polyads in spoll- 1 rec8 (figure 3B). - Figure 5 illustrates meiotic chromosome spreads in wild type, spoil -1 rec8, TDM-P17 and spoll-1 rec8 TDM-P17 plants. (A to D) Meiosis in wild type. (A) Five bivalents align at metaphase I and (B) pairs of homologous chromosome are distributed into two nuclei at telophase I. (C) Five pairs of sister chromatids align on the two metaphase plates. (D) Four balanced nuclei are formed at telophase II. (E to H) Meiosis in spoll-1 rec8. The first division resembles a mitotic division with (E) aligment at 10 pairs of chromatids on the metaphase plates and (F) segregation into two groups of 10 chromatids. (G) single chromatids fail to align properly at metaphase II, resulting into (H) a variable number of unbalanced nuclei at telophase II. (I to J) Meiosis in wild type plant transformed with TDM-P17. A single, meiosis I-like division is observed. (K to L) Meiosis in spoll-1 rec8 plants transformed with TDM- PI 7. A single, mitotic-like division is observed.
EXAMPLES
EXPERIMENTAL PROCEDURES
1. Growth conditions and genotyping
Arabidopsis plants were cultivated in greenhouse as previously described (Vignard et al , PLoS Genet. , 2007, 3, 1894-1906) or in vitro on Arabidopsis medium, as previously described (Estelle and Somerville, Mol. Genet. , 1987, 206, 200-206) at 21 °C, under a 16-h to 18-h photoperiod and 70% relative humidity.
spol 1-1-3 rec8-2 plants were genotyped as previously described
(d'Erfurth et al., PLoS Biol, 2009, 7, e 1000124). tdm-3 plants were genotyped as described in Cromer et al., PLoS Genet., 2012, 8, el002865.
2. EMS Mutagenesis and mutation identification
EMS mutagenesis was performed as previously described (Crismani et al, Science, 2012, 336, 1588-1590). Whole genome sequencing was done by HigSeq™ 2000 (Illumina). A list of SNPs was generated compared to the reference genome of Arabidopsis thaliana TAIR10 (cultivar Columbia).
3. Cytology and ploidy analysis
Male meiotic products observation, chromosomes spreads, and ploidy measurement were carried out using the techniques described by d'Erfurth et al. (PLoS Genet., 2008, 4, el 000274). 4. Directed mutagenesis constructs and plant tranformalion
TDM genomic fragment was amplified by PCR using TDM U (5'- GACATCGGC ACTTGCTTAGAG-3 '; SEQ ID NO: 36) and TDM L (5'- GCGATATAGCTCCC ACTGGTT-3 ' ; SEQ ID NO: 37). The amplification covered 986 nucleotides before the ATG and 537 nucleotides after the stop codon. The PCR product was cloned, by Gateway™ technology (Invitrogen), into the pDONR207™ vector (Invitrogen), to create pENTR-TDM, on which directed mutagenesis was performed using the Stratagene QuickChange™ Site-Directed Mutagenesis Kit, according to the manufacturer's instructions. The mutagenic primers used to generate mutated version of TDM were SEQ ID NO: 38 to 41 :
- TDM-P17L: 5'-GAGTTTACTATACTCTGCCGCCGGCGAGAAC-3';
- TDM-T16A: 5 '-CTCC ACCTGG AGTTTACTATGCCCCGCCGCCGGCG AGA-3 ' ;
- TDM-Y14A: 5'-CCACCTGGAGTTGCGTATACTCCGCCGCGGCG-3';
-TDM-Δ 14-19: 5' -CC ACCTGGAGTTGCGAGA ACAAGTGATC ATGTGGC-3 ' ; and their respective reverse complementary primers. To generate binary vectors for plant transformation, an LR recombination reaction was performed with the binary vector for the Gateway™ system, pGWBl (Nakagawa et al, Journal of Bioscience and Bioengineering. 2007, 104, 34-41). The resulting binary vectors, pTDM, pTDM-P17L, pT16A, and pTDM-Y14A, were transformed using the Agrobacterium-mediated floral dip method (Clough, SJ. and Bent A. F., Plant J., 1998, 16, 735-743) on wild type plants and plant populations segregating for the spolJ-1 or rec8 or tdm-3 mutation. Transformed plants were selected on agar plates containing 20 mg/L hygromycin.
EXAMPLE 1: A DOMINANT MUTATION IN TDM LEADS TO PREMATURE MEIOTIC EXIT
To identify new genes controlling meiotic progression, a genetic screen was designed based on the idea that mutations that lead to the skipping of the second meiotic division such as osdl and cycal ;2/tam will restore the fertility of mutants that have unbalanced chromosome segregation defect only at the second meiotic division (d'Erfurth et al, PLoS Biol , 2009, 7, el 000124; d'Erfurth et al, PLoS Genet., 2010, 6, el 000989 and WO 2010/079432). This is the case of spoil rec8 double mutants, in which the first meiotic division resembles a mitosis (balanced segregation of sister chromatids to opposite poles) but the second division is unbalanced and leads to aneuploid gametes and hence very limited fertility (figure 5) (Chelysheva et al. , J. Cell. Set , 2005, 1 18, 4621 -32). Mutations in OSDl (d'Erfurth et al , PLoS Biol. , 2009, 7, el 000124 2009) or CYCA1;2/TAM (d'Erfurth et al, PLoS Genet. , 2010, 6, el 000989), that lead to meiotic exit before meiosis II, are indeed able to restore fertility of spoll-l rec8. Thus, a genetic screen was ran based on the restoration of fertility of spol l-1 rec8, aiming at identifying mutants conferring similar defects than osdl or tarn. Despite their meiotic segregation defect, spoll-1 rec8 plants produced enough residual seeds that were mutagenized with ethylmethane sulfonate (EMS). The Ml plants that are presumably heterozygous for EMS mutations were self-fertilized and harvested in bulks of ~5 to produce M2 families. About 2000 M2 families (400 bulks) were screened for increased fertility compared to spoll-1 rec8 non-mutagenized control.
Three bulks segregated plants with increased fertility. Genotyping confirmed that they were spoll-1 rec8 mutants which indicated that were genuine suppressors. Analysis of male meiotic products stained by toluidine blue showed that in all three cases, fertile plants produced dyads of spores, as observed in osdl or cycal ;2/tam, instead of tetrads, as observed in wild type, suggesting that the second meiotic division did not occur in those plants (figure 3). Sequencing of candidate genes (CYCAl;2/TAM md OSDl) identified recessive mutations in CYCA 1, -2/TAM in two of the three families. The identified mutations were a splicing site in exon 7 (TAIR10 chrl -.29082522 C>T) and a mutation in the 5'UTR region which introduced an upstream out of frame start codon (TAIR10 chrl :29084174 G>A). A complementation test showed that they were allelic, confirming that the mutations in CYCA1;2 caused the dyad phenotype and the restoration of fertility. The third family (spol lrec8(s)-40) had no mutation in OSDl and CYCA1;2 and is the focus of this study.
Chromosome spreads unexpectedly showed that the four plants were tetraploids (Figure 3). This suggested that the causal mutation was dominant and caused the production of diploid gametes in both male and female organs of the Ml plant. Whole genome sequencing of the bulk of two sister plants with -100X coverage revealed the presence of 1 144 SNPs compared to wild type. However, only 15 SNPs appeared as homozygote. These few homozygote SNPs were dispersed in the genome suggesting that they were present in the spol 1-1 rec8 line before mutagenesis, rather than resulting from fixation of EMS induced mutations. The fact that almost all detected mutations were heterozygote further suggested that the causal mutation was dominant. This mutation would have been phenotypically expressed in the Ml plant leading, in combination with spoll-1 rec8 mutation, to the production of diploid clonal gamete as observed in a spoll-1 rec8 osdl triple mutant (MiMe, d'Erfurth et al , PLoS Biol , 2009, 7, el000124 and WO 2010/079432), hence maintaining heterozygosity of EMS induced mutations from the Ml plant in the tetraploid M2 plants.
Candidate causal mutations were then looked for among the heterozygote SNPs. Among these 1129 mutations, 341 were predicted to affect a coding sequence (non-sense, missense or splicing site). Among them, a mutation in TDM resulting in an amino acid change (TDM-P17L), appeared as a good candidate as the potential causal dominant mutation. TDM was previously shown to be essential for meiotic exit at the end of meiosis II. Even if the meiotic defect observed in tdm knockout mutants (an extra round of division) differs drastically from the (spoil rec8(s) -40) defect, a dominant mutation in TDM appeared as a potential candidate to be the causal mutation in (spoil rec8(s)-40).
To test this hypothesis, a genomic clone containing the TDM gene (including promoter and terminator) that is able to complement tdm-3 mutant (n=8 transformants, 100% tetrads) was produced and mutated to recreate the mutation identified in the screen (TDM-P17L). When introduced in spoil -lrec8 plants, the TDM-P17L clone restored fertility of primary transformants (n=2/3. spoll-1 rec8: 0.1 seeds per fruit (n=197), spoll-1 rec8 TDM-P17L#15: 25 seeds per fruit (n=15), spoll- 1 rec8 TDM-P17L#67: 48 seeds per fruit (n=10)) and led to the production of dyads (figure 4, table II). This demonstrates that the mutation in TDM is indeed the causal dominant mutation in spol lrec8(s)-40. Analysis of meiotic chromosome spreads in spoil -lrec8 TDM-P17L transformants showed a mitotic-like first division, with 10 univalents aligned at metaphase-I and sister chromatids segregated at anaphase I, and absence of second division (figure 5). Next, the ploidy level of spoll-lrec8 TDM-P17L offspring was explored. Among selfed progeny, only tetraploids (4n) were found (Table III). When spol 1-1 rec8 TDM-P17L pollen was used to fertilise a wild-type plant, all the resulting progeny were triploid (Table III). When spoll-1 rec8 TDM-P17L ovules were fertilised with wild-type pollen grains, only triploid plants were found (Table III). This demonstrated that spoll-1 rec8 mutants transformed by TDM-P17L produce high levels of male and female (100%) mitosis-like derived spores, which result in functional diploid gametes.
When introduced in wild type plants and tdm-3 mutants, the TDM- P17L genomic clone modified the meiotic phenotype of both genotypes by the production of dyads (Figure 4, Table II).
Table II: Meiotic product of primary transformants
Figure imgf000022_0001
TDM-PI 7Zplants that produced dyads showed a wild type first division and an absence of meiosis II ( figure 5) which caused the formation of 2n gametes, a phenotype reminiscent of the one from osdl and cycal ;2/tam (d'Erfurth et al. , PLoS Biol , 2009, 7, el 000124 and WO 2010/079432; d'Erfurth et al, PLoS Genet. , 2010, 6, el 000989). Ploidy levels were measured among the offspring of TDM-P17L plants (Table III). Among selfed progeny, tetraploids and triploids were found. When TDM-P17L ovules were fertilised with wild-type pollen grains, diploid and triploid plants were isolated (Table III).
Table III: Ploidy of spol 1-1 rec8 TDM-P17L and TDM-P17L offsprings
Figure imgf000023_0001
In summary, the tdm-pl 7L dominant mutation confers a similar meiotic defect than the recessive osdlox tarn mutations, leading to the premature exit from meiosis before the second division and consequently to the production of diploid male and female gametes.
TDM belongs to a small family of protein conserved in plants. For instance, the Arabidopsis genome contains five other genes showing significant sequence similarity with TDM (Figure 2). These TDM-like genes are of unknown function. The analysis of the protein sequences showed that the causal mutation was in a small domain conserved only in the TDM protein subfamily that contains typically one or two genes per plant species (Figure 1). The Pro 17 amino acid is absolutely conserved as well as the adjacent Thrl6 amino acid (Figure 1). This defines a minimum consensus phosphorylation site on the T16. To test this two other potential loss-of- phosphorylation versions of the genomic TDM gene were created at that site by substituting the phosphorylable amino acid by a non phosphorylable one (TDM-T16A), and by deleting the entire conserved domain (TDM-A14J9). Both TDM-T16A and TDM-A14_19 gave the dyad phenotype in a dominant manner when introduced into wild type plants, recapitulating the effect of TDM-P17L (Table II; figure 4). Further, when introduced into tdm-3 mutants, TDM-A14_19 also showed the dyad phenotype (Table II). However mutation of the TDM tyrosine 14 (TDM-Y14A), a slightly less conserved amino acid of the domain, was unable to confer the dyad phenotype when introduced in wild type and was able to complement the tdm-3 mutation (Table II). In summary, expression of TDM-P17L, -T16A and -M4-19 mutations are equally able to dominantly confer premature meiosis exit. As TP is a potential phosphorylation sites, this results suggest that TDM may be regulated by phosphorylation to ensure the meiosis I to meiosis II transition.

Claims

1. A method for obtaining a plant producing Second Division Restitution 2n gametes,
wherein said method comprises providing, by random or targeted mutagenesis or by genetic transformation, a plant comprising a dominant mutation within a gene, herein designated as TDM gene, coding for a protein designated herein as TDM protein,
wlierein said protein has at least 75 % sequence identity with amino acid residues 1 to 286 of the TDM protein of SEQ ID NO: 1 when said plant is Brassica spp. or at least 30 % identity with said residues when said plant is different from Brassica spp, and the 60 first amino acids of said protein comprise a motif X1X2X3, wherein Xi is a Threonine (T), X2 is a Proline (P), and X3 is a Proline (P) or a Glutamine (Q), designated herein as TPP/Q motif,
and wherein said dominant mutation comprises the mutation of at least one residue of the motif XiX2X3 of said TDM protein and results in the ability of the plant to produce Second Division Restitution 2n gametes,
2. The method according to claim 1 , wherein said motif is situated in a region of said protein which is that situated from positions 16-18 of SEQ ID NO: 1.
3. The method according to claim 1 or 2, wherein said residue is the T residue or its adjacent P residue.
4. The method according to claim 3, wherein said mutation is selected from the group consisting of: the substitution of said T and/or P residues with a different residue and the deletion of said T and/or P residues, alone or with 1 or 2 residues flanking said T and/or P residues.
5. The method according to any one of claims 1 to 4, wherein said mutation abrogates phosphorylation at the T residue of said motif.
6. The method according to any one of claims 1 to 5, which comprises: providing by random or targeted mutagenesis, a plant having said dominant mutation within an allele of a TDM gene, said plant being heterozygous for this mutation.
7. The method according to any one of claims 1 to 5, wherein said plant is a transgenic plant, and said method comprises: a) transforming at least one plant cell with a vector containing a DNA construct comprising a TDM gene having said dominant mutation;
b) cultivating said transformed plant cell in order to regenerate a plant having in its genome a transgene containing said DNA construct.
8. A method for obtaining a plant producing apomeiotic gametes, wherein said method comprises:
a) providing a plant comprising said dominant mutation in a TDM gene as defined in anyone of claims 1 to 7;
b) inhibiting in said plant a first protein involved in initiation of meiotic recombination in plants, said protein being selected among :
- a protein designated as SPOl 1-1 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-1 protein of SEQ ID NO: 29;
- a protein designated as SPOl 1-2 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 60%, and by order of increasing preference, at least, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the SPOl 1-2 protein of SEQ ID NO: 30;
- a protein designated as PRD1 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD1 protein of SEQ ID NO: 31 ;
- a protein designated as PRD2 protein, wherein said protein has at least 25 %, and by order of increasing preference, at least 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 35%, and by order of increasing preference, at least, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PRD2 protein of SEQ ID NO: 32; - a protein designated as PAIRl protein, wherein said protein has at least 30%, and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the PAIRl protein of SEQ ID NO: 33;
- a protein designated as DFO protein, wherein said protein has at least 30%, and by order of increasing preference, at least 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 40%, and by order of increasing preference, at least, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the DFO protein of SEQ ID NO: 34, and
c) inhibiting in said plant a second protein designated as REC8 protein, wherein said protein has at least 40%, and by order of increasing preference, at least 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence identity, or at least 45%, and by order of increasing preference, at least, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 98% sequence similarity with the REC8 protein of SEQ ID NO: 35.
9. The method according to claim 8, wherein inhibition of at least one of the SPOl l-1, SPOl l-2, PRDl, PRD2, DFO, PAIRl, or REC8 proteins is obtained by mutagenesis of the gene encoding said protein of or of its promoter, and selection of the mutants having partially or totally lost the activity of said protein.
10. The method according to claim 8, wherein inhibition of at least one of the SPOl l -1, SPOl l-2, PRDl, PRD2, DFO, PAIRl , or REC8 proteins is obtained by expressing in said plant of a silencing RNA targeting the gene encoding said protein.
1 1. A DNA construct comprising the TDM gene having a dominant mutation as defined in any one of claims 1 to 5.
12. A plant producing Second Division Restitution 2n gametes, obtainable by the method of any of claims 1 to 7, wherein the plant comprises said dominant mutation in the motif ΧιΧ2Χ3 of the TDM protein which results in the ability of the plant to produce Second Division Restitution 2n gametes.
13. A plant producing Second Division Restitution 2n gametes, which is a transgenic plant containing a transgene comprising the DNA construct of claim 1 1.
14. A plant producing apomeiotic gametes, obtainable by a method of any of claims 8 to 10, wherein the plant comprises said dominant mutation in the motif X[X2X3 of the TDM protein which results in the ability of the plant to produce Second Division Restitution 2n gametes.
15. A method for producing Second Division Restitution 2n gametes, wherein said method comprises cultivating a plant obtainable by a method of any of claims 1 to 7, wherein the plant comprises said dominant mutation in the motif XjX2X3 of the TDM protein which results in the ability of the plant to produce Second Division Restitution 2n gametes , and recovering the gametes produced by said plant.
16. A method for producing apomeiotic gametes, wherein said method comprises cultivating a plant obtainable by a method of any of claims 8 to 10, wherein the plant comprises said dominant mutation in the motif X]X2X3 of the TDM protein which results in the ability of the plant to produce Second Division Restitution 2n gametes, and recovering the gametes produced by said plant.
PCT/EP2015/062174 2014-06-02 2015-06-01 A dominant mutation in the tdm gene leading to diplogametes production in plants WO2015185514A1 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
BR112016025103-2A BR112016025103A2 (en) 2014-06-02 2015-06-01 dominant mutation in the tdm gene that gives rise to diplogametes production in plants
EP15725640.5A EP3149175A1 (en) 2014-06-02 2015-06-01 A dominant mutation in the tdm gene leading to diplogametes production in plants
CN201580023921.2A CN106661589A (en) 2014-06-02 2015-06-01 A dominant mutation in the TDM gene leading to diplogametes production in plants
JP2016567071A JP2017520240A (en) 2014-06-02 2015-06-01 Dominant mutation of TDM gene resulting in diploid gamete production in plants
US15/308,807 US10674686B2 (en) 2014-06-02 2015-06-01 Dominant mutation in the TDM gene leading to diplogametes production in plants

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP14305828.7 2014-06-02
EP14305828 2014-06-02

Publications (1)

Publication Number Publication Date
WO2015185514A1 true WO2015185514A1 (en) 2015-12-10

Family

ID=50928045

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2015/062174 WO2015185514A1 (en) 2014-06-02 2015-06-01 A dominant mutation in the tdm gene leading to diplogametes production in plants

Country Status (6)

Country Link
US (1) US10674686B2 (en)
EP (1) EP3149175A1 (en)
JP (1) JP2017520240A (en)
CN (1) CN106661589A (en)
BR (1) BR112016025103A2 (en)
WO (1) WO2015185514A1 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112226456A (en) * 2019-06-28 2021-01-15 中国水稻研究所 Method for realizing chromosome fixed-point genetic recombination

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109943585B (en) * 2018-04-12 2020-05-15 中国水稻研究所 Method for utilizing plant heterosis
CN109444026B (en) * 2018-10-26 2020-11-27 云南省农业科学院花卉研究所 Method for efficiently screening meiosis recombination inhibition mutants
CN115466319A (en) * 2021-05-28 2022-12-13 中国农业科学院作物科学研究所 Sorghum SbMS1 protein and coding gene and application thereof
CN117402887B (en) * 2022-07-15 2024-07-30 海南波莲水稻基因科技有限公司 Maize male fertility regulation gene ZmMS, mutant thereof and application
CN117209577B (en) * 2023-08-29 2024-07-30 中国科学院东北地理与农业生态研究所 Plant meiosis related protein GmPRD1, and coding gene and application thereof

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1997030581A1 (en) * 1996-02-22 1997-08-28 Gene Shears Pty. Limited Male-sterile plants
US20070039067A1 (en) * 2004-09-30 2007-02-15 Ceres, Inc. Nucleotide sequences and polypeptides encoded thereby useful for modifying plant characteristics
US20070214517A1 (en) * 2004-02-13 2007-09-13 Ceres, Inc. Sequence-determined DNA fragments and corresponding polypeptides encoded thereby
WO2010004431A1 (en) * 2008-07-08 2010-01-14 Institut National De La Recherche Agronomique Plants producing 2n pollen
WO2010079432A1 (en) * 2009-01-07 2010-07-15 Institut National De La Recherche Agronomique Plants producing 2n gametes or apomeiotic gametes
WO2012075195A1 (en) * 2010-12-01 2012-06-07 Institut National De La Recherche Agronomique Synthetic clonal reproduction through seeds

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040031072A1 (en) * 1999-05-06 2004-02-12 La Rosa Thomas J. Soy nucleic acid molecules and other molecules associated with transcription plants and uses thereof for plant improvement

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1997030581A1 (en) * 1996-02-22 1997-08-28 Gene Shears Pty. Limited Male-sterile plants
US20070214517A1 (en) * 2004-02-13 2007-09-13 Ceres, Inc. Sequence-determined DNA fragments and corresponding polypeptides encoded thereby
US20070039067A1 (en) * 2004-09-30 2007-02-15 Ceres, Inc. Nucleotide sequences and polypeptides encoded thereby useful for modifying plant characteristics
WO2010004431A1 (en) * 2008-07-08 2010-01-14 Institut National De La Recherche Agronomique Plants producing 2n pollen
WO2010079432A1 (en) * 2009-01-07 2010-07-15 Institut National De La Recherche Agronomique Plants producing 2n gametes or apomeiotic gametes
WO2012075195A1 (en) * 2010-12-01 2012-06-07 Institut National De La Recherche Agronomique Synthetic clonal reproduction through seeds

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
CROMER LAURENCE ET AL: "OSD1 Promotes Meiotic Progression via APC/C Inhibition and Forms a Regulatory Network with TDM and CYCA1;2/TAM", PLOS GENETICS, vol. 8, no. 7, July 2012 (2012-07-01), XP002729223 *
D'ERFURTH ISABELLE ET AL: "Turning meiosis into mitosis", PLOS BIOLOGY, PUBLIC LIBRARY OF SCIENCE, US, vol. 7, no. 6, 9 June 2009 (2009-06-09), XP002575074, ISSN: 1544-9173 *
ROSS K J ET AL: "Cytological characterization of four meiotic mutants of Arabidopsis isolated from T-DNA-transformed lines", CHROMOSOME RESEARCH, KLUWER ACADEMIC PUBLISHERS, DO, vol. 5, no. 8, 1 December 1997 (1997-12-01), pages 551 - 559, XP019235049, ISSN: 1573-6849, DOI: 10.1023/A:1018497804129 *
WIJNKER ERIK ET AL: "Control of the meiotic cell division program in plants", PLANT REPRODUCTION, vol. 26, no. 3, September 2013 (2013-09-01), pages 143 - 158, XP002729222 *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112226456A (en) * 2019-06-28 2021-01-15 中国水稻研究所 Method for realizing chromosome fixed-point genetic recombination

Also Published As

Publication number Publication date
BR112016025103A2 (en) 2018-02-20
US10674686B2 (en) 2020-06-09
US20170280645A1 (en) 2017-10-05
JP2017520240A (en) 2017-07-27
EP3149175A1 (en) 2017-04-05
CN106661589A (en) 2017-05-10

Similar Documents

Publication Publication Date Title
AU2011336603B2 (en) Synthetic clonal reproduction through seeds
US10674686B2 (en) Dominant mutation in the TDM gene leading to diplogametes production in plants
US20220186238A1 (en) Diplospory gene
JP2019523011A (en) Methods for base editing in plants
US20220106607A1 (en) Gene for parthenogenesis
JP2022028656A (en) Method for production of haploid and subsequent doubled haploid plants
US20230383308A1 (en) Modified promoter of a parthenogenesis gene
JP2018530323A (en) Method for producing haploid and subsequent doubled haploid plant
AU2021363100A9 (en) Modified promoter of a parthenogenesis gene
US20220098607A1 (en) Haploid inducers
WO2021058485A1 (en) Generation of haploids based on mutation of sad2
Ihsan et al. WsMAGO2, a duplicated MAGO NASHI protein with fertility attributes interacts with MPF2-like MADS-box proteins
WO2014021398A1 (en) Parthenocarpy regulation gene and use thereof
BR112018004300B1 (en) CHIMERIC GENE, GENETIC CONSTRUCT, VECTOR, USE AND METHOD TO CONFER DIPLOSPORIA IN A PLANT
EA046710B1 (en) HAPLOID INDUCTOR

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 15725640

Country of ref document: EP

Kind code of ref document: A1

REEP Request for entry into the european phase

Ref document number: 2015725640

Country of ref document: EP

WWE Wipo information: entry into national phase

Ref document number: 2015725640

Country of ref document: EP

WWE Wipo information: entry into national phase

Ref document number: 15308807

Country of ref document: US

ENP Entry into the national phase

Ref document number: 2016567071

Country of ref document: JP

Kind code of ref document: A

REG Reference to national code

Ref country code: BR

Ref legal event code: B01A

Ref document number: 112016025103

Country of ref document: BR

NENP Non-entry into the national phase

Ref country code: DE

ENP Entry into the national phase

Ref document number: 112016025103

Country of ref document: BR

Kind code of ref document: A2

Effective date: 20161026