WO2015100495A1 - Modified natural killer cells, compositions and uses thereof - Google Patents

Modified natural killer cells, compositions and uses thereof Download PDF

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Publication number
WO2015100495A1
WO2015100495A1 PCT/CA2014/051264 CA2014051264W WO2015100495A1 WO 2015100495 A1 WO2015100495 A1 WO 2015100495A1 CA 2014051264 W CA2014051264 W CA 2014051264W WO 2015100495 A1 WO2015100495 A1 WO 2015100495A1
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Prior art keywords
cell
modified
cells
composition
depleted
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PCT/CA2014/051264
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French (fr)
Inventor
Jan Mou Lee
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FullHope Biomedical Co., Ltd.
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Publication date
Application filed by FullHope Biomedical Co., Ltd. filed Critical FullHope Biomedical Co., Ltd.
Priority to JP2016562043A priority Critical patent/JP6588465B2/en
Priority to US15/109,537 priority patent/US10195231B2/en
Priority to CN201480072082.9A priority patent/CN106103701B/en
Priority to CA2935459A priority patent/CA2935459C/en
Publication of WO2015100495A1 publication Critical patent/WO2015100495A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K35/00Medicinal preparations containing materials or reaction products thereof with undetermined constitution
    • A61K35/12Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells
    • A61K35/14Blood; Artificial blood
    • A61K35/17Lymphocytes; B-cells; T-cells; Natural killer cells; Interferon-activated or cytokine-activated lymphocytes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/46Cellular immunotherapy
    • A61K39/461Cellular immunotherapy characterised by the cell type used
    • A61K39/4613Natural-killer cells [NK or NK-T]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/46Cellular immunotherapy
    • A61K39/464Cellular immunotherapy characterised by the antigen targeted or presented
    • A61K39/4643Vertebrate antigens
    • A61K39/4644Cancer antigens
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/06Animal cells or tissues; Human cells or tissues
    • C12N5/0602Vertebrate cells
    • C12N5/0634Cells from the blood or the immune system
    • C12N5/0646Natural killers cells [NK], NKT cells
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K2239/00Indexing codes associated with cellular immunotherapy of group A61K39/46
    • A61K2239/46Indexing codes associated with cellular immunotherapy of group A61K39/46 characterised by the cancer treated
    • A61K2239/48Blood cells, e.g. leukemia or lymphoma
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2501/00Active agents used in cell culture processes, e.g. differentation
    • C12N2501/20Cytokines; Chemokines
    • C12N2501/23Interleukins [IL]
    • C12N2501/2312Interleukin-12 (IL-12)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2501/00Active agents used in cell culture processes, e.g. differentation
    • C12N2501/20Cytokines; Chemokines
    • C12N2501/23Interleukins [IL]
    • C12N2501/2315Interleukin-15 (IL-15)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2501/00Active agents used in cell culture processes, e.g. differentation
    • C12N2501/20Cytokines; Chemokines
    • C12N2501/24Interferons [IFN]

Definitions

  • the invention relates to modified natural killer (NK) cells and pharmaceutical compositions comprising the same. Methods are provided for identifying depleted natural killer (NK) cells and culturing of modified NK cells.
  • NK cells are cytotoxic lymphocytes that actively scan the body for abnormal cells, destroying them before they can develop into actual cancer cells. As NK cells patrol the body, they interact with many types of cells using their array of activating and inhibiting surface receptors. Most cancer cells engage the NK cell's activating receptors, which triggers its natural kill response.
  • the present invention provides modified natural killer cells having a unique phenotype to satisfy these and other needs.
  • the cells can be used in autologous therapy or in non-autologous therapy.
  • the present invention provides a modified NK cell comprising a CD37CD56 + NK cell phenotype; and one or more dendritic cell surface antigens selected from HLA-DR, CD83 and CD86.
  • compositions comprising a modified NK cell described herein and a pharmaceutically acceptable carrier or excipient.
  • Some embodiments provide methods for inhibiting cancer cells, comprising the administering one or more modified NK cells as described herein in a subject in need thereof.
  • Other embodiments provide methods of inhibiting cancer calls, comprising administering an effective amount of the modified NK cell of claim 1 to a subject in need thereof, wherein the cancer cells are inhibited.
  • a fourth embodiment of the present invention provides methods of identifying depleted NK cells from a sample, comprising depleting one or more of the following cell surface antigens from a mononuclear cell in said sample: CD14, CD19 or CD25, wherein said depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
  • a fifth embodiment of the invention provides compositions comprising a T helper 1 cytokine; and a T cell growth factor.
  • a sixth embodiment of the present invention provides methods of culturing a modified NK cell, comprising contacting a depleted NK cell with a composition comprising (a) a T helper 1 cytokine; and (b) a T-cell growth factor, wherein the depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
  • the invention provides methods of culturing modified NK cells, comprising (a) contacting the depleted NK cell with a first composition comprising IFN- ⁇ and IL-15; and (b) contacting the depleted NK cell of step (a) with a second composition comprising IL-15, IL-12 and IFN- 7 , wherein the depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD14, CD 19 and CD25.
  • the identification and culturing methods described herein allow for isolation of a greater number of modified NK cells from a fixed amount of a sample (for example, 10ml of blood).
  • FIG. 1 illustrates schematically the identification steps of depleted NK cells and culturing steps of modified NK cells.
  • Fig. 2 is an assembly of images illustrating the expression level of CD 14, CD 19 and CD25 cell surface antigens on the NK cells before and after the depletion/ identification process.
  • Panel (A) shows the flow cytometry analysis of CD 14 + , CD19 + and CD25 + cells using forward scatter (FSC) and side scatter (SCC) measurement systems before cell depletion and
  • Panel (B) contains the flow cytometry analysis of CD14 + , CD 19 + and CD25 + cells after cell depletion.
  • Fig. 3 is an assembly of flow cytometry images of conventional NK cells, NK cells in US Application No. 13/918,529 and modified NK cells of the present invention.
  • Panels A-C and J-L illustrate the flow cytometry analysis of the conventional NK cells for CD56, CD 11c, CD 16, HKG2D, HLA-DR, CD86 and CD83.
  • Panels G-I and P-R illustrate the flow cytometry analysis of the modified NK cell of the present invention.
  • Panels D-F and M-0 illustrate the flow cytometry analysis of NK cells in US Application No. 13/918,529.
  • Fig. 4 is an assembly of flow cytometry images illustrating the cytotoxicity of the modified NK cells.
  • Panel A shows the % of Caspase 6 positive target cells in the absence of modified NK cells and
  • Panel B shows the % of Caspase 6 positive target cells in the presence of modified NK cells of the current invention.
  • Fig. 5 is an assembly of flow cytometry analysis of cell division illustrating the effect of modified NK cells on T lymphocyte proliferation.
  • Panel A shows the in vitro proliferation of modified NK cells without allogeneic T lymphocytes
  • Panel B shows the in vitro proliferation of allogeneic T lymphocytes without modified NK cells
  • Panel C shows the in vitro proliferation of allogeneic T lymphocytes in the presence of modified NK cells.
  • Fig. 6 is an assembly of flow cytometry images showing the effect of various concentrations of IL-12 on modified NK cells.
  • Fig. 7 is an assembly of flow cytometry images showing the effect of compositions comprising IL-2 (Panels A-C, G-I and M) or compositions comprising IL- 15 (Panels D-F, J-L and N) on the expression of cell surface antigens on the modified NK cells.
  • a modified NK cell means one modified NK cell or more than one modified NK cell.
  • an "effective amount,” as used herein, refers to a dose of the modified NK cells or pharmaceutical composition that is sufficient to reduce the symptoms and signs of cancer, which include, but are not limited to, weight loss, pain or tumor mass
  • subject can refer to a vertebrate having cancer or to a vertebrate deemed to be in need of cancer treatment.
  • Subjects include warm-blooded animals, such as mammals, such as a primate, and, more preferably, a human.
  • Non-human primates are subjects as well.
  • subject includes domesticated animals, such as cats, dogs, etc., livestock (for example, cattle, horses, pigs, sheep, goats, etc.) and laboratory animals (for example, mouse, rabbit, rat, gerbil, guinea pig, etc.).
  • livestock for example, cattle, horses, pigs, sheep, goats, etc.
  • laboratory animals for example, mouse, rabbit, rat, gerbil, guinea pig, etc.
  • a cell surface antigen such as CD83, CD86, HLA-DR
  • a cell surface antigen such as CD83, CD86, HLA-DR
  • Naturally occurring or conventional NK cells have CD37CD56 + phenotype.
  • the naturally occurring or conventional NK cells have CD3 " CD14 " CD 19 " CD56 + CD16 + NKG2D + CDl lc + phenotype, as illustrated in Table 1.
  • the present invention provides a modified NK cell comprising a CD37CD56 + NK cell phenotype; and one or more dendritic cell surface antigens selected from HLA-DR, CD83 and CD86, as illustrated in Table 1.
  • the modified NK cell of the present invention is non-naturally occurring.
  • the modified NK cells comprise one or more of the fully activated dendritic cell surface antigens (for example, HLA-DR, CD83 and CD86) and possess both NK cell function and dendritic cell function and an enhanced anti-cancer activity.
  • the modified NK cell is substantially free of CDl lc (having a phenotype of CD3 " CD56 + CDH " ).
  • the modified NK cell comprises one or more of the NK cell phenotype selected from CD 14 " , CD 19 " , CD16 + and NKG2D + (having a phenotype of, for example, CD3 " CD 14 " CD 19 " CD56 + CD16 + NKG2D + ).
  • the modified NK cell is substantially free of CD14 and/or CD19.
  • the present invention provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD37CD56 + NK cell further comprises a CD83 cell surface antigen (having a phenotype of CD3 " CD56 + CD83 + ).
  • the present invention provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein CD37CD56 + said NK cell further comprises a CD86 cell surface antigen (having a phenotype of CD3 " CD56 + CD86 + ).
  • the present invention provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD3 " /CD56 + NK cell further comprises a HLA-DR cell surface antigen (having a phenotype of CD3 " CD56 + HLA-DR + ).
  • a fourth exemplary embodiment provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD37CD56 + NK cell further comprises a CD83 cell surface antigen and a CD86 cell surface antigen (having a phenotype of CD3 " CD56 + CD86 + CD83 + ).
  • a fifth exemplary embodiment provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD37CD56 + NK cell further comprises a CD86 cell surface antigen and a HLA-DR cell surface antigen (having a phenotype of CD3 " CD56 CD86 HLA-DR ).
  • a sixth exemplary embodiment provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD3 " /CD56 + NK cell further comprises a HLA-DR cell surface antigen and a CD83 cell surface antigen (having a phenotype of CD3 " CD56 + HLA-DR + CD83 + ).
  • the present invention provides a modified NK cell comprising a CD37CD56 + phenotype NK cell, wherein said CD37CD56 + NK cell further comprises a HLA-DR cell surface antigen, a CD83 cell surface antigen and a CD86 cell surface antigen (having a phenotype of CD3 " CD56 + CD86 + HLA-DR + CD83 + ).
  • the expression level or surface density of the cell surface antigen is quantified by exposing the modified NK cells to a fluorescent dye-tagged specific anti-human monoclonal antibody (e.g., CD86-PE (Beckman Coulter; Cat. No: IM2729U) or Anti- human CD83-PE-Cy5 (BioLegend; Cat. No: 305310)), followed by sorting of the modified NK cells using flow cytometry (e.g. Gallios, commercially available from Beckman Coulter, Inc., USA).
  • a fluorescent dye-tagged specific anti-human monoclonal antibody e.g., CD86-PE (Beckman Coulter; Cat. No: IM2729U) or Anti- human CD83-PE-Cy5 (BioLegend; Cat. No: 305310)
  • flow cytometry e.g. Gallios, commercially available from Beckman Coulter, Inc., USA.
  • the modified NK cells can be from a single individual, i.e., autologous, or pooled from multiple individuals (non-autologous allogeneic).
  • the present invention provides pharmaceutical compositions comprising a modified NK cell described herein, and a pharmaceutically acceptable carrier or excipient.
  • the invention also provides methods of inhibiting cancer cells by administering to a subject in need thereof the present modified NK cells or the present pharmaceutical composition in an amount effective to inhibit cancer cells.
  • the modified NK cells inhibit cancer cells by one or more of the NK cell/ dendritic cell functions: enhancing cytotoxicity, stimulating cancer-specific T lymphocyte proliferation or IFNy secretion.
  • Routes of administration of the present pharmaceutical compositions or modified NK cells include, but are not limited to, intravenous, intramuscular, subcutaneous, oral, topical, subcutaneous, intradermal, transdermal, subdermal, parenteral, rectal, spinal, or epidermal administration.
  • the modified NK cells are administered by intravenous injection or infusion.
  • compositions of the present invention can be prepared as injectables, either as liquid solutions or suspensions, or as solid forms which are suitable for solution or suspension in liquid vehicles prior to injection.
  • the pharmaceutical composition can also be prepared in solid form, emulsified or other particulate carriers used for sustained delivery.
  • the pharmaceutical composition can be in the form of an oil emulsion, water-in-oil emulsion, water-in-oil-in-water emulsion, site- specific emulsion, long-residence emulsion, sticky emulsion, micro emulsion, nano emulsion, liposome, microparticle, microsphere, nanosphere, nanoparticle and various natural or synthetic polymers, such as nonresorbable impermeable polymers such as ethylenevinyl acetate copolymers and Hytrel® copolymers, swellable polymers such as hydrogels, or resorbable polymers such as collagen and certain polyacids or polyesters such as those used to make resorbable sutures, that allow for sustained release of the pharmaceutical composition.
  • nonresorbable impermeable polymers such as ethylenevinyl acetate copolymers and Hytrel® copolymers
  • swellable polymers such as hydrogels
  • resorbable polymers such as collagen and certain
  • the present modified NK cells are formulated into pharmaceutical compositions for delivery to a mammalian subject.
  • the pharmaceutical composition is administered alone, and/or mixed with a pharmaceutically acceptable vehicle, excipient or carrier.
  • Suitable vehicles are, for example, saline, dextrose, glycerol, or the like, and combinations thereof.
  • the vehicle can contain minor amounts of auxiliary substances such as wetting or emulsifying agents, pH buffering agents, or adjuvants.
  • Pharmaceutically acceptable carriers can contain a physiologically acceptable compound that acts to, e.g. , stabilize, or increase or decrease the absorption or clearance rates of the pharmaceutical compositions of the invention.
  • Physiologically acceptable compounds can include, e.g.
  • compositions of the present invention can also include ancillary substances, such as pharmacological agents, cytokines, or other biological response modifiers.
  • modified NK cells or the present pharmaceutical compositions can be administered in a single dose treatment or in multiple dose treatments on a schedule and over a time period appropriate to the age, weight and condition of the subject, the particular composition used, and the route of administration, whether the modified NK cells or the present pharmaceutical composition is used for prophylactic or curative purposes, etc.
  • the modified NK cells or pharmaceutical composition according to the invention is administered once per month, twice per month, three times per month, every other week (qow), once per week (qw), twice per week (biw), three times per week (tiw), four times per week, five times per week, six times per week, every other day (qod), daily (qd), twice a day (qid), or three times a day (tid).
  • the duration of administration of the modified NK cells or the pharmaceutical composition according to the invention can vary, depending on any of a variety of factors, e.g., subject response, etc.
  • the modified NK cells or pharmaceutical composition can be administered over a period of time ranging from about one or more seconds to one or more minutes, one or more hours to one day to about one week, from about two weeks to about four weeks, from about one month to about two months, from about two months to about four months, from about four months to about six months, from about six months to about eight months, from about eight months to about 1 year, from about 1 year to about 2 years, or from about 2 years to about 4 years, or more.
  • Dosage unit form refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of modified NK cells calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier.
  • the dosage of such NK cells lies within a range of circulating concentrations that include the ED 50 with little or no toxicity.
  • the dosage can vary within this range depending upon the dosage form employed and the route of administration utilized.
  • the therapeutically effective dose can be estimated initially from cell culture assays.
  • a dose can be formulated in animal models to achieve a circulating plasma concentration range that includes the IC 50 ( ⁇ £ ⁇ , the concentration of the modified NK cells which achieves a half-maximal inhibition of symptoms) as determined in cell culture.
  • IC 50 ⁇ £ ⁇ , the concentration of the modified NK cells which achieves a half-maximal inhibition of symptoms
  • the pharmaceutical composition is formulated to contain an effective amount of the present modified NK cells, wherein the amount depends on the animal to be treated and the condition to be treated.
  • the specific dose level for any particular subject depends upon a variety of factors including the activity of the specific modified NK cells, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination and the severity of the particular disease undergoing therapy.
  • An exemplary, non-limiting range for a therapeutically or prophylactically effective amount of the modified NK cells of the present invention is at least about lx 10 3 cells per dose to about lx 10 9 per dose.
  • Other dosages are also possible, including, but not limited to, 1 x 10 4 , 1 X 10 5 , 1 x 10 6 , 1 x 10 7 , 1 x 10 8 or 1 x 10 9 .
  • the modified NK cells or the pharmaceutical composition can be administered alone or in combination with another therapeutic agent, e.g., chemotherapy, radiotherapy or targeted therapy or cancer vaccine.
  • another therapeutic agent e.g., chemotherapy, radiotherapy or targeted therapy or cancer vaccine.
  • Modified NK cell culture uses depleted NK cells (purified CD14 CD19 CD25 " mononuclear cells) as the initial cell population for the expansion culture.
  • the identification/depletion steps to obtain a highly purified fraction of CD14 CD19 CD25 " mononuclear cells (depleted NK cells) are as follows:
  • the sample includes, but is not limited to, any body fluid containing one or more mononuclear cells, such as peripheral blood, cord blood or bone marrow sample.
  • step (b) Separating the mononuclear cells within the sample in step (a) from other types of blood cells via centrifugation (Ficoll-PaqueTM PREMIUM, GE Healthcare USA). Other methods of separating mononuclear cells are known, or will be apparent, to those skilled in the art.
  • step (c) Depleting one or more mononuclear cells comprising CD25 cell surface antigen (for example, mononuclear cells phenotypes CD25 + CD3 " and CD25 + CD3 + ), CD 14 cell surface antigen or CD 19 cell surface antigen from the other mononuclear cells in step (b), for example, by MACS sorting (Mitenyi Biotec, Germany).
  • CD25 cell surface antigen for example, mononuclear cells phenotypes CD25 + CD3 " and CD25 + CD3 +
  • CD 14 cell surface antigen or CD 19 cell surface antigen from the other mononuclear cells in step (b), for example, by MACS sorting (Mitenyi Biotec, Germany).
  • step (d) Collecting the CD14 " CD19 " CD25 " mononuclear cells (or depleted NK cells) in step (c) for culture.
  • One embodiment of the invention provides methods for identifying a depleted NK cell from a sample, comprising depleting one or more of the following cell surface antigens from a mononuclear cell in said sample: CD14, CD19 or CD25, wherein said depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
  • the mononuclear cells comprising CD25 in Step (b) are depleted in the sample.
  • the mononuclear cells comprising CD14 in Step (b) are depleted in the sample.
  • the mononuclear cells comprising CD 19 in Step (b) are depleted in the sample.
  • one or more mononuclear cells comprising CD 14 and one or more mononuclear cells comprising CD25 in Step (b) are depleted in the sample.
  • one or more mononuclear cells comprising CD 14 and one or more mononuclear cells comprising CD 19 in Step (b) are depleted in the sample.
  • one or more mononuclear cells comprising CD 19 and one or more mononuclear cells comprising CD25 in Step (b) are depleted in the sample.
  • one or more mononuclear cells comprising CD 19, one or more mononuclear cells comprising CD25 and one or more mononuclear cells comprising CD14 in Step (b) are depleted in the sample.
  • substantially all of the mononuclear cells comprising CD25 are depleted in the sample. In another embodiment, substantially all of the mononuclear cells comprising CD14 are depleted in the sample. In yet another embodiment, substantially all of the mononuclear cells comprising CD 19 are depleted in said sample.
  • a highly purified fraction of CD14 " CD19 CD25 " mononuclear cells are in contact with a culture composition comprising a T cell growth factor and a T help 1 cytokine.
  • the CD14 CD19 CD25 " mononuclear cells in step (c) are mixed with a composition comprising a T cell growth factor, a T help 1 cytokine and IL-12.
  • T cell growth factor is IL-15.
  • T helper 1 cytokine include Interferon gamma (IFNy).
  • the composition further comprises a hematopoietic cell medium.
  • the hematopoietic cell medium includes X-vivo 20 (commercially available from Lonza, Switzerland).
  • the culture composition is substantially free of one or more the growth factors selected from: stem cell factor, FTL3 ligand, IL-2, IL-7, IL-21 and nicotinamide.
  • stem cell factor, FTL3 ligand, IL-2, IL-7, IL-21 or nicotinamide is present in the culture composition in an amount of ⁇ 2 weight %, ⁇ 1.5 weight %, ⁇ 1 weight %, and ⁇ 0.5 weight %.
  • the composition comprising a T cell growth factor and a T help 1 cytokine is used for culture the modified NK cells, in the presence of 5% C0 2 at 37 X.
  • the composition according to some embodiments of the invention enhances the proliferation of the modified NK cells.
  • the composition enhances the expression of fully activated dendritic cell markers such as HLA-DR, CD83 and CD86 cell surface antigens on the modified NK cells.
  • the composition substantially reduces the expression of CDl lc cell surface antigens on the modified NK cells.
  • Proliferation rate of the modified NK cells was determined by FACS, based on the signal intensity of CD3 " CD14 " CD19 " CD56 + CDl lc " cells.
  • Other assays for cell proliferation are well known in the art, e.g., clonogenic assays, metabolic assays, and direct proliferation assays.
  • An exemplary non-limiting range for the contact time of the CD14 CD19 " CD25 " mononuclear cells and the composition is from about 1 minute to about 1 hour, from about 1 hour to about 24 hours, from about 1 day to about 3 days, from about 1 day to about 6 days, from about 1 day to about 9 days, from about 3 days to about 6 days, or at least 1 day.
  • the contact time is about 3 days. In another embodiment, the contact time is about 6 days.
  • the CD14 " CD19 " CD25 " mononuclear cells (or depleted NK cells) are in contact with a first composition comprising an IL-15, an IFNy and an IL- 12; followed by contacting with a second composition comprising an IL-15 and an IFNy.
  • the first and second compositions further comprise a hematopoietic cell medium, such as X-vivo 20.
  • IL-12 is toxic to NK cells. Therefore, the concentration of IL-12 in the composition is critical for culturing and expansion of viable modified NK cells, as a higher concentration of IL-12 lead to a lower harvest of viable modified NK cells (see Fig. 6).
  • the effective concentration of IL-12 is less than or equal to 15 ng/ml, such as, for example, 14.5, 14, 13.5 ng/ml. In another embodiment, the effective concentration of IL-12 is greater than 0.1 ng/ml, such as, for example, 0.15, 0.2, 0.25 ng/ml. In yet another embodiment, the effective concentration of IL-12 is about 0.1 to about 5 ng/ml, or any value or range of values there between in 0.1 ng/ml increments (e.g., about 0.6 ng/ml, about 4.3 ng/ml , etc.).
  • the effective concentration of IL-12 is equal to about 5 to about 10 ng/ml or any value or range of values there between in 0.1 % increments (e.g., about 6.5 ng/ml, about 8.2 ng/ml etc.). In yet another embodiment, the effective concentration of IL-12 is equal to about 10 to about less than 15 ng/ml or any value or range of values there between in 0.1 % increments (e.g., about 13.7 ng/ml, about 12.8 ng/ml etc.).
  • Example 1 Identification of the modified NK cells
  • 40 ml of peripheral blood was collected from a healthy volunteer into vacuum tubes containing K2EDTA.
  • the blood sample was mixed with equal volume of pre- warmed phosphate-buffered saline (PBS) (Biological Industries, Israel).
  • PBS pre- warmed phosphate-buffered saline
  • the 40ml diluted peripheral blood aliquot was placed into a 50ml centrifuge tube and downloaded 10ml pre-warmed Ficoll-PaqueTM PREMIUM.
  • the centrifuge tube was centrifuged at 2000 rpm, in room temperature for 30 min.
  • the mononuclear cells in the interface layer were collected, washed once in PBS.
  • the cell pellet was re-suspended into a density of 10 6 /100ml MACS buffer.
  • the mononuclear cells were subjected to immunomagnetic bead separation using "QuadroMACS Separator" (Miltenyi Biotec Bergisch, Gladbach, Germany), according to the manufacturer's instructions. Briefly, the mononuclear cells were reacted with biotin-anti-CD 14, biotin- anti-CD19, and biotin-anti-CD25 , separated with a magnetic separator, and the CD 14 negative, CD 19 negative and CD25 negative cell fraction was purified from unbound cells by washing. The enriched mononuclear cell fraction was substantially free of CD14 + cells, CD19 + cells and CD25 + cells (the depleted NK cells).
  • NK cell the depleted NK cell fraction from Example 1 was cultured as follows:
  • NK cells depleted NK cells
  • a composition comprising 1 ml of X-vivo 20 medium, 1ml of IL-15 (concentration: lOng/ml), 1ml of IL-12 (concentration: 4ng/ml) and 1ml of IFN- ⁇ (concentration: 20ng/ml ) on day 0.
  • step (b) Harvesting and spinning down half of depleted NK cells in step (a), followed by re-suspending cell pellet with a composition comprising X-vivo 20, lOng/ml of IL-15, 4ng/ml of IL-12 and 20ng/ml of IFN- ⁇ on day 3.
  • the volume of X-vivo 20 and each of the growth factors used to suspend the cell pellet should be equal to the volume of the cell pellet.
  • step (c) Harvesting and spinning down half of the depleted NK cells in step (b), followed by re-suspending cell pellet with a composition comprising X-vivo 20, lOng/ml IL-15 and 20ng/ml IFN- ⁇ on day 6.
  • the volume of X- vivo 20 and each of the growth factors used to suspend the cells should be equal to the volume of the cell pellet.
  • step (d) Collecting all of the cultured depleted NK cells in step (c) on day 9.
  • step (d) The cultured depleted NK cells in step (d) were assayed for their phenotype using Gallios Flow Cytometer (10 COLORS/3 LASERS, serial number: AU18419, Beckman Coulter, Inc. USA), Kazula software version 1.2 (Beckman Coulter, Inc. USA) and antibodies listed in Table 2.
  • the expression level or surface density of the cell surface antigen using FACS/flow cytometry analysis are defined in Table 3.
  • the interpretation for the various expression levels in Table 3 is an example of defining the expression level of the cell surface antigen. It should be noted that the flow cytometry signal level intensity varies with the following factors: the flow cytometry, the software and different batches of antibody used.
  • Fig. 3G-3I and Fig. 3P-3R the cultured NK cells have the phenotype of CD3 " CD19 " CD14 " CD56 + CD16 + NKG2D + CDl lc " CD86 + HLA-DR + CD83 + .
  • Fig. 3A-3C and 3J-3L illustrate the conventional NK cells have the phenotype of CD3 " CD19 " CD14 " CD56 + CD16 + NKG2D + CDl lc + CD86 " HLA-DR " CD83 " .
  • Fig. 3D- 3F and 3M-30 illustrate the flow cytometry analysis of the NK cells in US Application No. 13/918,529.
  • Fig. 3 A shows the conventional NK cells having phenotype CDl lc +
  • Fig. 3G shows the modified NK cells having phenotype CD1 lc " .
  • Fig. 3J shows the conventional NK cells having phenotype ULA-DR " whereas Fig. 3P shows the modified NK cells having phenotype HLA-DR + .
  • Fig. 3K shows the conventional NK cells having phenotype CD86 " whereas Fig.
  • 3Q shows the modified NK cells having phenotype CD86 + .
  • Fig. 3L shows the conventional NK cells having phenotype CD83 " whereas Fig.
  • 3R shows the modified NK cells having phenotype CD83 + .
  • Killing assay modified NK cells from Example 2 were cultured with APC- labelled K562 leukaemic target cells at 1 : 1 ratio for 30 minutes. Killing of target cells was determined by FACS as a percentage Capase 6-positive (dead) APC-labeled target cells. A higher % of Capase 6+ cells is indicative of higher level of killing.
  • modified NK cells (with modified NK cells) was 57.8%. This result shows the modified NK cells has a higher cytotoxic effect on the leukaemic target cells.
  • Modified NK cells from Example 2 were cultured with CFSE-labelled allogeneic T lymphocytes.
  • the proliferation of T lymphocytes led to the secretion of cytokines, such as IFNy and IL-2.
  • the proliferation of allogeneic T lymphocytes was determined by FACS as the number of CFSE-labelled mononuclear cells.
  • Results The division of a proportion of allogeneic T lymphocytes is higher when cultured with the NK cells of Example 2 (Fig. 5C) and little or no division of allogeneic T lymphocyte when cultured alone, i.e., without the NK cells of Example 2 (Fig. 5B).
  • IL-12 is potentially toxic.
  • An in vitro evaluation of the concentration of IL-12 in a composition was performed using FACS/Flow cytometry.
  • IL-12 concentrations were used in the composition for culturing the NK cells of Example 2: 0 ng/ml IL-12 (no IL-12), 0.18 ng/ml, 0.55 ng/ml, 1.66 ng/ml, 5 ng/ml and 15 ng/ml.
  • Results As shown in Fig. 6, the number of viable NK cells in Example 2 reduces with a higher IL-12 concentration. At an IL-12 concentration of 5 ng/ml, about 14.13% of the cultured NK cells were viable whereas at an IL-12 concentration of 15 ng/ml, only 7.31% of the cultured NK cells were viable.
  • Example 5 The Effect of IL-2 on Modified NK Cell Culture
  • CD86 cell surface antigen and CD83 cell surface antigen were not expressed on the NK cells which cultured with a composition comprising IL-2.
  • CD86 cell surface antigen and CD83 cell surface antigen were both expressed on the NK cells which cultured with a composition comprising IL-15, as illustrated in Fig. 7K and 7L.

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Abstract

The present invention provides modified natural killer cells, pharmaceutical compositions comprising the modified natural killer cells and at least one pharmaceutically acceptable carrier or excipient, and uses of the modified natural killer cells. Also disclosed herein are methods for identifying depleted natural killer cells and culturing the modified natural killer cells.

Description

MODIFIED NATURAL KILLER CELLS, COMPOSITIONS AND USES
THEREOF CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of U. S. Application No. 61/923,354, filed on 3 January 2014, the entire disclosure of which is incorporated herein by reference.
FIELD
[0002] The invention relates to modified natural killer (NK) cells and pharmaceutical compositions comprising the same. Methods are provided for identifying depleted natural killer (NK) cells and culturing of modified NK cells.
BACKGROUND
[0003] Immune surveillance plays a critical role against cancer and represents a very attractive therapeutic approach, especially in light of the many shortcomings of conventional surgery, radiation and chemotherapies in the management of cancer.
[0004] The human body's first line of defense against cancer is the natural killer (NK) cell, with the phenotype CD3" CD14" CD19" CD56+ CD16+ NGK2D+ CDl lc+ HLA-DR" CD86" CD83". NK cells are cytotoxic lymphocytes that actively scan the body for abnormal cells, destroying them before they can develop into actual cancer cells. As NK cells patrol the body, they interact with many types of cells using their array of activating and inhibiting surface receptors. Most cancer cells engage the NK cell's activating receptors, which triggers its natural kill response.
[0005] These findings support a rationale for develop a NK based therapy against cancer cells and culture methods to generate greater number of therapeutically competent NK cells for clinical applications, as there is still an unmet need for effective treatment and/or prevention for cancer. The present invention provides modified natural killer cells having a unique phenotype to satisfy these and other needs. The cells can be used in autologous therapy or in non-autologous therapy.
SUMMARY OF THE INVENTION [0006] In one embodiment, the present invention provides a modified NK cell comprising a CD37CD56+ NK cell phenotype; and one or more dendritic cell surface antigens selected from HLA-DR, CD83 and CD86.
[0007] Some embodiments provide pharmaceutical compositions comprising a modified NK cell described herein and a pharmaceutically acceptable carrier or excipient.
[0008] Some embodiments provide methods for inhibiting cancer cells, comprising the administering one or more modified NK cells as described herein in a subject in need thereof.
[0009] Other embodiments provide methods of inhibiting cancer calls, comprising administering an effective amount of the modified NK cell of claim 1 to a subject in need thereof, wherein the cancer cells are inhibited.
[0010] A fourth embodiment of the present invention provides methods of identifying depleted NK cells from a sample, comprising depleting one or more of the following cell surface antigens from a mononuclear cell in said sample: CD14, CD19 or CD25, wherein said depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
[0011] A fifth embodiment of the invention provides compositions comprising a T helper 1 cytokine; and a T cell growth factor.
[0012] A sixth embodiment of the present invention provides methods of culturing a modified NK cell, comprising contacting a depleted NK cell with a composition comprising (a) a T helper 1 cytokine; and (b) a T-cell growth factor, wherein the depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
[0013] In yet another embodiment, the invention provides methods of culturing modified NK cells, comprising (a) contacting the depleted NK cell with a first composition comprising IFN- γ and IL-15; and (b) contacting the depleted NK cell of step (a) with a second composition comprising IL-15, IL-12 and IFN- 7 , wherein the depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD14, CD 19 and CD25.
[0014] The identification and culturing methods described herein allow for isolation of a greater number of modified NK cells from a fixed amount of a sample (for example, 10ml of blood).
BRIEF DESCRIPTION OF THE DRAWINGS
[0015] The patent or patent application contains at least one drawing executed in color. Copies of this patent or patent application with color drawings will be provided by the Office upon request and payment of the necessary fee.
[0016] Illustrative embodiments of the present invention are described in detail below with reference to the following Figures:
[0017] Fig. 1 illustrates schematically the identification steps of depleted NK cells and culturing steps of modified NK cells.
[0018] Fig. 2 is an assembly of images illustrating the expression level of CD 14, CD 19 and CD25 cell surface antigens on the NK cells before and after the depletion/ identification process. Panel (A) shows the flow cytometry analysis of CD 14+, CD19+ and CD25+ cells using forward scatter (FSC) and side scatter (SCC) measurement systems before cell depletion and Panel (B) contains the flow cytometry analysis of CD14+, CD 19+ and CD25+ cells after cell depletion.
[0019] Fig. 3 is an assembly of flow cytometry images of conventional NK cells, NK cells in US Application No. 13/918,529 and modified NK cells of the present invention. Panels A-C and J-L illustrate the flow cytometry analysis of the conventional NK cells for CD56, CD 11c, CD 16, HKG2D, HLA-DR, CD86 and CD83. Panels G-I and P-R illustrate the flow cytometry analysis of the modified NK cell of the present invention. Panels D-F and M-0 illustrate the flow cytometry analysis of NK cells in US Application No. 13/918,529.
[0020] Fig. 4 is an assembly of flow cytometry images illustrating the cytotoxicity of the modified NK cells. Panel A shows the % of Caspase 6 positive target cells in the absence of modified NK cells and Panel B shows the % of Caspase 6 positive target cells in the presence of modified NK cells of the current invention.
[0021] Fig. 5 is an assembly of flow cytometry analysis of cell division illustrating the effect of modified NK cells on T lymphocyte proliferation. Panel A shows the in vitro proliferation of modified NK cells without allogeneic T lymphocytes, Panel B shows the in vitro proliferation of allogeneic T lymphocytes without modified NK cells and Panel C shows the in vitro proliferation of allogeneic T lymphocytes in the presence of modified NK cells.
[0022] Fig. 6 is an assembly of flow cytometry images showing the effect of various concentrations of IL-12 on modified NK cells.
[0023] Fig. 7 is an assembly of flow cytometry images showing the effect of compositions comprising IL-2 (Panels A-C, G-I and M) or compositions comprising IL- 15 (Panels D-F, J-L and N) on the expression of cell surface antigens on the modified NK cells.
DETAILED DESCRIPTION OF THE INVENTION
[0024] As used herein, the articles "a" and "an" refer to one or more than one (i.e., at least one) of the grammatical object of the article. By way of example, "a modified NK cell" means one modified NK cell or more than one modified NK cell.
[0025] An "effective amount," as used herein, refers to a dose of the modified NK cells or pharmaceutical composition that is sufficient to reduce the symptoms and signs of cancer, which include, but are not limited to, weight loss, pain or tumor mass
which is detectable, either clinically as a palpable mass or radiologically through various imaging means.
[0026] The term "subject" can refer to a vertebrate having cancer or to a vertebrate deemed to be in need of cancer treatment. Subjects include warm-blooded animals, such as mammals, such as a primate, and, more preferably, a human. Non-human primates are subjects as well. The term subject includes domesticated animals, such as cats, dogs, etc., livestock (for example, cattle, horses, pigs, sheep, goats, etc.) and laboratory animals (for example, mouse, rabbit, rat, gerbil, guinea pig, etc.). Thus, veterinary uses and medical formulations are contemplated herein.
[0027] The expression level or surface density of a cell surface antigen, such as CD83, CD86, HLA-DR, on the surface of NK cells are "+" as long as the expression is positive relative to a negative control population, expressed as
[0028] All numbers herein may be understood as modified by "about."
Modified NK Cell
[0029] Naturally occurring or conventional NK cells have CD37CD56+ phenotype. In one embodiment, the naturally occurring or conventional NK cells have CD3" CD14" CD 19" CD56+CD16+ NKG2D+ CDl lc+ phenotype, as illustrated in Table 1.
[0030] In one embodiment, the present invention provides a modified NK cell comprising a CD37CD56+ NK cell phenotype; and one or more dendritic cell surface antigens selected from HLA-DR, CD83 and CD86, as illustrated in Table 1. The modified NK cell of the present invention is non-naturally occurring. The modified NK cells comprise one or more of the fully activated dendritic cell surface antigens (for example, HLA-DR, CD83 and CD86) and possess both NK cell function and dendritic cell function and an enhanced anti-cancer activity.
[0031] Table 1. Phenotypes of conventional NK cells and modified NK cells
Figure imgf000007_0001
[0032] In one embodiment, the modified NK cell is substantially free of CDl lc (having a phenotype of CD3" CD56+ CDH"). In another embodiment, the modified NK cell comprises one or more of the NK cell phenotype selected from CD 14", CD 19", CD16+ and NKG2D+ (having a phenotype of, for example, CD3" CD 14" CD 19" CD56+CD16+ NKG2D+). In yet another embodiment, the modified NK cell is substantially free of CD14 and/or CD19.
[0033] In one exemplary embodiment, the present invention provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD37CD56+ NK cell further comprises a CD83 cell surface antigen (having a phenotype of CD3" CD56+ CD83+). In another exemplary embodiment, the present invention provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein CD37CD56+ said NK cell further comprises a CD86 cell surface antigen (having a phenotype of CD3" CD56+ CD86+). In yet another exemplary embodiment, the present invention provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD3" /CD56+ NK cell further comprises a HLA-DR cell surface antigen (having a phenotype of CD3" CD56+ HLA-DR+).
[0034] A fourth exemplary embodiment provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD37CD56+ NK cell further comprises a CD83 cell surface antigen and a CD86 cell surface antigen (having a phenotype of CD3" CD56+ CD86+ CD83+). A fifth exemplary embodiment provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD37CD56+ NK cell further comprises a CD86 cell surface antigen and a HLA-DR cell surface antigen (having a phenotype of CD3" CD56 CD86 HLA-DR ). A sixth exemplary embodiment provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD3" /CD56+ NK cell further comprises a HLA-DR cell surface antigen and a CD83 cell surface antigen (having a phenotype of CD3" CD56+ HLA-DR+ CD83+).
[0035] In some exemplary embodiments, the present invention provides a modified NK cell comprising a CD37CD56+ phenotype NK cell, wherein said CD37CD56+ NK cell further comprises a HLA-DR cell surface antigen, a CD83 cell surface antigen and a CD86 cell surface antigen (having a phenotype of CD3" CD56+ CD86+ HLA-DR+ CD83+).
[0036] In one embodiment, the expression level or surface density of the cell surface antigen is quantified by exposing the modified NK cells to a fluorescent dye-tagged specific anti-human monoclonal antibody (e.g., CD86-PE (Beckman Coulter; Cat. No: IM2729U) or Anti- human CD83-PE-Cy5 (BioLegend; Cat. No: 305310)), followed by sorting of the modified NK cells using flow cytometry (e.g. Gallios, commercially available from Beckman Coulter, Inc., USA).
[0037] The modified NK cells can be from a single individual, i.e., autologous, or pooled from multiple individuals (non-autologous allogeneic).
Pharmaceutical Composition
[0038] In one embodiment, the present invention provides pharmaceutical compositions comprising a modified NK cell described herein, and a pharmaceutically acceptable carrier or excipient.
[0039] The invention also provides methods of inhibiting cancer cells by administering to a subject in need thereof the present modified NK cells or the present pharmaceutical composition in an amount effective to inhibit cancer cells. Without being bound by any particular theory, it is believed that the modified NK cells inhibit cancer cells by one or more of the NK cell/ dendritic cell functions: enhancing cytotoxicity, stimulating cancer-specific T lymphocyte proliferation or IFNy secretion.
[0040] Routes of administration of the present pharmaceutical compositions or modified NK cells include, but are not limited to, intravenous, intramuscular, subcutaneous, oral, topical, subcutaneous, intradermal, transdermal, subdermal, parenteral, rectal, spinal, or epidermal administration. In one embodiment, the modified NK cells are administered by intravenous injection or infusion.
[0041] The pharmaceutical compositions of the present invention can be prepared as injectables, either as liquid solutions or suspensions, or as solid forms which are suitable for solution or suspension in liquid vehicles prior to injection. The pharmaceutical composition can also be prepared in solid form, emulsified or other particulate carriers used for sustained delivery. For example, the pharmaceutical composition can be in the form of an oil emulsion, water-in-oil emulsion, water-in-oil-in-water emulsion, site- specific emulsion, long-residence emulsion, sticky emulsion, micro emulsion, nano emulsion, liposome, microparticle, microsphere, nanosphere, nanoparticle and various natural or synthetic polymers, such as nonresorbable impermeable polymers such as ethylenevinyl acetate copolymers and Hytrel® copolymers, swellable polymers such as hydrogels, or resorbable polymers such as collagen and certain polyacids or polyesters such as those used to make resorbable sutures, that allow for sustained release of the pharmaceutical composition.
[0042] The present modified NK cells are formulated into pharmaceutical compositions for delivery to a mammalian subject. The pharmaceutical composition is administered alone, and/or mixed with a pharmaceutically acceptable vehicle, excipient or carrier. Suitable vehicles are, for example, saline, dextrose, glycerol, or the like, and combinations thereof. In addition, the vehicle can contain minor amounts of auxiliary substances such as wetting or emulsifying agents, pH buffering agents, or adjuvants. Pharmaceutically acceptable carriers can contain a physiologically acceptable compound that acts to, e.g. , stabilize, or increase or decrease the absorption or clearance rates of the pharmaceutical compositions of the invention. Physiologically acceptable compounds can include, e.g. , carbohydrates, such as glucose, sucrose, or dextran, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins, detergents, liposomal carriers, or excipients or other stabilizers and/or buffers. Other physiologically acceptable compounds include wetting agents, emulsifying agents, dispersing agents or preservatives. See e.g., the 21 st edition of Remington's Pharmaceutical Science, Mack Publishing Company, Easton, Pa. ("Remington's"). The pharmaceutical compositions of the present invention can also include ancillary substances, such as pharmacological agents, cytokines, or other biological response modifiers.
[0043] Actual methods of preparing such dosage forms are known, or will be apparent, to those skilled in the art. See, e.g., Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pennsylvania, 21 st edition.
[0044] The modified NK cells or the present pharmaceutical compositions can be administered in a single dose treatment or in multiple dose treatments on a schedule and over a time period appropriate to the age, weight and condition of the subject, the particular composition used, and the route of administration, whether the modified NK cells or the present pharmaceutical composition is used for prophylactic or curative purposes, etc. For example, in one embodiment, the modified NK cells or pharmaceutical composition according to the invention is administered once per month, twice per month, three times per month, every other week (qow), once per week (qw), twice per week (biw), three times per week (tiw), four times per week, five times per week, six times per week, every other day (qod), daily (qd), twice a day (qid), or three times a day (tid).
[0045] The duration of administration of the modified NK cells or the pharmaceutical composition according to the invention, e.g., the period of time over which the modified NK cell or pharmaceutical composition is administered, can vary, depending on any of a variety of factors, e.g., subject response, etc. For example, the modified NK cells or pharmaceutical composition can be administered over a period of time ranging from about one or more seconds to one or more minutes, one or more hours to one day to about one week, from about two weeks to about four weeks, from about one month to about two months, from about two months to about four months, from about four months to about six months, from about six months to about eight months, from about eight months to about 1 year, from about 1 year to about 2 years, or from about 2 years to about 4 years, or more.
[0046] It is advantageous to formulate parenteral pharmaceutical compositions or modified NK cells in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of modified NK cells calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier.
[0047] The data obtained from the cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. In one embodiment, the dosage of such NK cells lies within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage can vary within this range depending upon the dosage form employed and the route of administration utilized. In another embodiment, the therapeutically effective dose can be estimated initially from cell culture assays. A dose can be formulated in animal models to achieve a circulating plasma concentration range that includes the IC50 ( ·£·, the concentration of the modified NK cells which achieves a half-maximal inhibition of symptoms) as determined in cell culture. Sonderstrup, Springer, Sem. Immunopathol. 25 : 35-45, 2003. Nikula et al, Inhal. Toxicol. 4(12j: 123- 53, 2000.
[0048] The pharmaceutical composition is formulated to contain an effective amount of the present modified NK cells, wherein the amount depends on the animal to be treated and the condition to be treated. The specific dose level for any particular subject depends upon a variety of factors including the activity of the specific modified NK cells, the age, body weight, general health, sex, diet, time of administration, route of administration, and rate of excretion, drug combination and the severity of the particular disease undergoing therapy. An exemplary, non-limiting range for a therapeutically or prophylactically effective amount of the modified NK cells of the present invention is at least about lx 103 cells per dose to about lx 109 per dose. Other dosages are also possible, including, but not limited to, 1 x 104, 1 X 105, 1 x 106, 1 x 107, 1 x 108 or 1 x 109.
[0049] The modified NK cells or the pharmaceutical composition can be administered alone or in combination with another therapeutic agent, e.g., chemotherapy, radiotherapy or targeted therapy or cancer vaccine. Methods of Identifying and Culturing the Modified NK Cells
[0050] In one embodiment, the methods of identifying depleted NK cells and culturing the modified NK cells are illustrated in Fig. 1. Modified NK cell culture uses depleted NK cells (purified CD14 CD19 CD25" mononuclear cells) as the initial cell population for the expansion culture.
[0051] In one embodiment, as shown in Fig. 1, the identification/depletion steps to obtain a highly purified fraction of CD14 CD19 CD25" mononuclear cells (depleted NK cells) are as follows:
(a) Collecting a sample from a subject. The sample includes, but is not limited to, any body fluid containing one or more mononuclear cells, such as peripheral blood, cord blood or bone marrow sample.
(b) Separating the mononuclear cells within the sample in step (a) from other types of blood cells via centrifugation (Ficoll-Paque™ PREMIUM, GE Healthcare USA). Other methods of separating mononuclear cells are known, or will be apparent, to those skilled in the art.
(c) Depleting one or more mononuclear cells comprising CD25 cell surface antigen (for example, mononuclear cells phenotypes CD25+ CD3" and CD25+CD3+), CD 14 cell surface antigen or CD 19 cell surface antigen from the other mononuclear cells in step (b), for example, by MACS sorting (Mitenyi Biotec, Germany).
(d) Collecting the CD14"CD19"CD25" mononuclear cells (or depleted NK cells) in step (c) for culture.
[0052] One embodiment of the invention provides methods for identifying a depleted NK cell from a sample, comprising depleting one or more of the following cell surface antigens from a mononuclear cell in said sample: CD14, CD19 or CD25, wherein said depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25. [0053] In one embodiment, the mononuclear cells comprising CD25 in Step (b) are depleted in the sample. In another embodiment, the mononuclear cells comprising CD14 in Step (b) are depleted in the sample. In yet another embodiment, the mononuclear cells comprising CD 19 in Step (b) are depleted in the sample. In yet another embodiment, one or more mononuclear cells comprising CD 14 and one or more mononuclear cells comprising CD25 in Step (b) are depleted in the sample. In yet another embodiment, one or more mononuclear cells comprising CD 14 and one or more mononuclear cells comprising CD 19 in Step (b) are depleted in the sample. In yet another embodiment, one or more mononuclear cells comprising CD 19 and one or more mononuclear cells comprising CD25 in Step (b) are depleted in the sample. In yet another embodiment, one or more mononuclear cells comprising CD 19, one or more mononuclear cells comprising CD25 and one or more mononuclear cells comprising CD14 in Step (b) are depleted in the sample.
[0054] In one embodiment, substantially all of the mononuclear cells comprising CD25 are depleted in the sample. In another embodiment, substantially all of the mononuclear cells comprising CD14 are depleted in the sample. In yet another embodiment, substantially all of the mononuclear cells comprising CD 19 are depleted in said sample.
[0055] In one embodiment, as shown in Fig. 1, a highly purified fraction of CD14" CD19 CD25" mononuclear cells (or depleted NK cells) are in contact with a culture composition comprising a T cell growth factor and a T help 1 cytokine. In another embodiment, the CD14 CD19 CD25" mononuclear cells in step (c) (or depleted NK cells) are mixed with a composition comprising a T cell growth factor, a T help 1 cytokine and IL-12. Non limiting example of T cell growth factor is IL-15. Non limiting examples of T helper 1 cytokine include Interferon gamma (IFNy). In another embodiment, the composition further comprises a hematopoietic cell medium. Non limiting example of the hematopoietic cell medium includes X-vivo 20 (commercially available from Lonza, Switzerland).
[0056] In one embodiment, the culture composition is substantially free of one or more the growth factors selected from: stem cell factor, FTL3 ligand, IL-2, IL-7, IL-21 and nicotinamide. In another embodiment, stem cell factor, FTL3 ligand, IL-2, IL-7, IL-21 or nicotinamide is present in the culture composition in an amount of < 2 weight %, < 1.5 weight %, < 1 weight %, and < 0.5 weight %.
[0057] In one embodiment, the composition comprising a T cell growth factor and a T help 1 cytokine is used for culture the modified NK cells, in the presence of 5% C02 at 37 X. [0058] The composition according to some embodiments of the invention enhances the proliferation of the modified NK cells. In one embodiment, the composition enhances the expression of fully activated dendritic cell markers such as HLA-DR, CD83 and CD86 cell surface antigens on the modified NK cells. In another embodiment, the composition substantially reduces the expression of CDl lc cell surface antigens on the modified NK cells. Proliferation rate of the modified NK cells was determined by FACS, based on the signal intensity of CD3"CD14"CD19"CD56+CDl lc" cells. Other assays for cell proliferation are well known in the art, e.g., clonogenic assays, metabolic assays, and direct proliferation assays.
[0059] An exemplary non-limiting range for the contact time of the CD14 CD19" CD25" mononuclear cells and the composition is from about 1 minute to about 1 hour, from about 1 hour to about 24 hours, from about 1 day to about 3 days, from about 1 day to about 6 days, from about 1 day to about 9 days, from about 3 days to about 6 days, or at least 1 day. In one embodiment, the contact time is about 3 days. In another embodiment, the contact time is about 6 days. [0060] In one embodiment, the CD14"CD19"CD25" mononuclear cells (or depleted NK cells) are in contact with a first composition comprising an IL-15, an IFNy and an IL- 12; followed by contacting with a second composition comprising an IL-15 and an IFNy. In another embodiment, the first and second compositions further comprise a hematopoietic cell medium, such as X-vivo 20. [0061] IL-12 is toxic to NK cells. Therefore, the concentration of IL-12 in the composition is critical for culturing and expansion of viable modified NK cells, as a higher concentration of IL-12 lead to a lower harvest of viable modified NK cells (see Fig. 6). In one embodiment, the effective concentration of IL-12 is less than or equal to 15 ng/ml, such as, for example, 14.5, 14, 13.5 ng/ml. In another embodiment, the effective concentration of IL-12 is greater than 0.1 ng/ml, such as, for example, 0.15, 0.2, 0.25 ng/ml. In yet another embodiment, the effective concentration of IL-12 is about 0.1 to about 5 ng/ml, or any value or range of values there between in 0.1 ng/ml increments (e.g., about 0.6 ng/ml, about 4.3 ng/ml , etc.). In yet another embodiment, the effective concentration of IL-12 is equal to about 5 to about 10 ng/ml or any value or range of values there between in 0.1 % increments (e.g., about 6.5 ng/ml, about 8.2 ng/ml etc.). In yet another embodiment, the effective concentration of IL-12 is equal to about 10 to about less than 15 ng/ml or any value or range of values there between in 0.1 % increments (e.g., about 13.7 ng/ml, about 12.8 ng/ml etc.).
[0062] The following examples of specific aspects for carrying out the present invention are offered for illustrative purposes only, and are not intended to limit the scope of the present invention in any way.
EXAMPLES
Example 1: Identification of the modified NK cells [0063] 40 ml of peripheral blood was collected from a healthy volunteer into vacuum tubes containing K2EDTA. The blood sample was mixed with equal volume of pre- warmed phosphate-buffered saline (PBS) (Biological Industries, Israel). The 40ml diluted peripheral blood aliquot was placed into a 50ml centrifuge tube and downloaded 10ml pre-warmed Ficoll-Paque™ PREMIUM. The centrifuge tube was centrifuged at 2000 rpm, in room temperature for 30 min. The mononuclear cells in the interface layer were collected, washed once in PBS. The cell pellet was re-suspended into a density of 106/100ml MACS buffer.
[0064] To deplete CD14+ cells, CD 19+ cells and CD25+ cells, the mononuclear cells were subjected to immunomagnetic bead separation using "QuadroMACS Separator" (Miltenyi Biotec Bergisch, Gladbach, Germany), according to the manufacturer's instructions. Briefly, the mononuclear cells were reacted with biotin-anti-CD 14, biotin- anti-CD19, and biotin-anti-CD25 , separated with a magnetic separator, and the CD 14 negative, CD 19 negative and CD25 negative cell fraction was purified from unbound cells by washing. The enriched mononuclear cell fraction was substantially free of CD14+ cells, CD19+ cells and CD25+ cells (the depleted NK cells).
[0065] As show in Fig. 2, the signal levels for CD 14+ cells, CD19+ cells and CD25+ NK cells were much higher before the depletion (Panel A) than those after the depletion (Panel B).
Example 2: Modified NK Cell Culture
[0066] After negative depletion, purified CD 14", CD 19" and CD25" NK cell (the depleted NK cell) fraction from Example 1 was cultured as follows:
(a) Contacting lxlO6 CD147CD197CD25" NK cells (depleted NK cells) with a composition comprising 1 ml of X-vivo 20 medium, 1ml of IL-15 (concentration: lOng/ml), 1ml of IL-12 (concentration: 4ng/ml) and 1ml of IFN-γ (concentration: 20ng/ml ) on day 0.
(b) Harvesting and spinning down half of depleted NK cells in step (a), followed by re-suspending cell pellet with a composition comprising X-vivo 20, lOng/ml of IL-15, 4ng/ml of IL-12 and 20ng/ml of IFN-γ on day 3. The volume of X-vivo 20 and each of the growth factors used to suspend the cell pellet should be equal to the volume of the cell pellet.
(c) Harvesting and spinning down half of the depleted NK cells in step (b), followed by re-suspending cell pellet with a composition comprising X-vivo 20, lOng/ml IL-15 and 20ng/ml IFN-γ on day 6. The volume of X- vivo 20 and each of the growth factors used to suspend the cells should be equal to the volume of the cell pellet.
(d) Collecting all of the cultured depleted NK cells in step (c) on day 9.
[0067] The cultured depleted NK cells in step (d) were assayed for their phenotype using Gallios Flow Cytometer (10 COLORS/3 LASERS, serial number: AU18419, Beckman Coulter, Inc. USA), Kazula software version 1.2 (Beckman Coulter, Inc. USA) and antibodies listed in Table 2.
[0068] Table 2. Antibodies used for modified NK cells phenotype
1. Anti- human CD3-FITC (Beckman Coulter; Cat. No: EVI1281U)
2. Anti- human CD86-PE (Beckman Coulter; Cat. No: IM2729U) 3. Anti- human CD14-PC5.5 (Beckman Coulter; Cat. No: A70204)
4. Anti- human CD16-PE-Cy7 (Beckman Coulter; Cat. No: 6607118)
5. Anti- human CDl lc-APC (BioLegend; Cat. No: 301614)
6. Anti- human CD56-APC-Alexa Fluor 700 (Beckman Coulter; Cat. No: B 10822)
7. Anti- human CD19-APC-Alexa Fluor750 (Beckman Coulter; Cat. No: A78838)
8. Anti- human HLA-DR-Pacific Blue (Beckman Coulter; Cat. No: A74781)
9. Anti- human CD86-Alexa Fluor488 (BioLegend; Cat. No: 305414)
10. Anti- human NKG2D-PE (Beckman Coulter; Cat. No: A08934)
1 1. Anti- human CD83-PE-Cy5 (BioLegend; Cat. No: 305310)
12. Anti- human CD3-APC-Alexa Fluor750 (Beckman Coulter; Cat. No: A66329)
13. Anti- human CD14-APC-Alexa Fluor750 (Beckman Coulter; Cat. No: A86052)
14. Anti- human CD25-PE (Beckman Coulter; Cat. No: IM0479U)
[0069] In this working example, the expression level or surface density of the cell surface antigen using FACS/flow cytometry analysis are defined in Table 3. The interpretation for the various expression levels in Table 3 is an example of defining the expression level of the cell surface antigen. It should be noted that the flow cytometry signal level intensity varies with the following factors: the flow cytometry, the software and different batches of antibody used.
Figure imgf000017_0001
[0071] Results: As shown in Fig. 3G-3I and Fig. 3P-3R , the cultured NK cells have the phenotype of CD3" CD19" CD14" CD56+ CD16+ NKG2D+ CDl lc" CD86+ HLA-DR+ CD83+. Fig. 3A-3C and 3J-3L illustrate the conventional NK cells have the phenotype of CD3" CD19" CD14" CD56+ CD16+ NKG2D+ CDl lc+ CD86" HLA-DR" CD83". Fig. 3D- 3F and 3M-30 illustrate the flow cytometry analysis of the NK cells in US Application No. 13/918,529.
[0072] The differences in conventional NK cell phenotype and modified NK cell phenotype are outlined below.
• Fig. 3 A shows the conventional NK cells having phenotype CDl lc+, whereas Fig. 3G shows the modified NK cells having phenotype CD1 lc".
• Fig. 3J shows the conventional NK cells having phenotype ULA-DR" whereas Fig. 3P shows the modified NK cells having phenotype HLA-DR+.
• Fig. 3K shows the conventional NK cells having phenotype CD86" whereas Fig.
3Q shows the modified NK cells having phenotype CD86+.
• Fig. 3L shows the conventional NK cells having phenotype CD83" whereas Fig.
3R shows the modified NK cells having phenotype CD83+.
Example 3: Determination of the Functionality of NK Cells
[0073] "Killing" assay: modified NK cells from Example 2 were cultured with APC- labelled K562 leukaemic target cells at 1 : 1 ratio for 30 minutes. Killing of target cells was determined by FACS as a percentage Capase 6-positive (dead) APC-labeled target cells. A higher % of Capase 6+ cells is indicative of higher level of killing.
[0074] Results: As shown in Fig. 4A, the % of capase positive target cells (without modified NK cells) was 8.3%, whereas in Fig. 4B, the % of capase positive target cells
(with modified NK cells) was 57.8%. This result shows the modified NK cells has a higher cytotoxic effect on the leukaemic target cells.
[0075] Assay of T Lymphocyte Proliferation
[0076] Modified NK cells from Example 2 were cultured with CFSE-labelled allogeneic T lymphocytes. The proliferation of T lymphocytes led to the secretion of cytokines, such as IFNy and IL-2. The proliferation of allogeneic T lymphocytes was determined by FACS as the number of CFSE-labelled mononuclear cells.
[0077] Results: The division of a proportion of allogeneic T lymphocytes is higher when cultured with the NK cells of Example 2 (Fig. 5C) and little or no division of allogeneic T lymphocyte when cultured alone, i.e., without the NK cells of Example 2 (Fig. 5B).
Example 4: The Effect of IL-12 Concentration on Modified NK Cell Culture
[0078] IL-12 is potentially toxic. An in vitro evaluation of the concentration of IL-12 in a composition was performed using FACS/Flow cytometry.
[0079] The following IL-12 concentrations were used in the composition for culturing the NK cells of Example 2: 0 ng/ml IL-12 (no IL-12), 0.18 ng/ml, 0.55 ng/ml, 1.66 ng/ml, 5 ng/ml and 15 ng/ml. [0080] Results: As shown in Fig. 6, the number of viable NK cells in Example 2 reduces with a higher IL-12 concentration. At an IL-12 concentration of 5 ng/ml, about 14.13% of the cultured NK cells were viable whereas at an IL-12 concentration of 15 ng/ml, only 7.31% of the cultured NK cells were viable. Example 5: The Effect of IL-2 on Modified NK Cell Culture
[0081] An in vitro evaluation of the effect of IL-2 composition and IL-15 composition on modified NK cell culture was performed using FACS/Flow cytometry.
[0082] As shown in Fig. 7H and 71, CD86 cell surface antigen and CD83 cell surface antigen were not expressed on the NK cells which cultured with a composition comprising IL-2. On the other hand, CD86 cell surface antigen and CD83 cell surface antigen were both expressed on the NK cells which cultured with a composition comprising IL-15, as illustrated in Fig. 7K and 7L.
[0083] While specific aspects of the invention have been described and illustrated, such aspects should be considered illustrative of the invention only and not as limiting the invention as construed in accordance with the accompanying claims. All publications and patent applications cited in this specification are herein incorporated by reference in their entirety for all purposes as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference for all purposes. Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be readily apparent to one of ordinary skill in the art in light of the teachings of this invention that certain changes and modifications can be made thereto without departing from the spirit or scope of the appended claims.

Claims

What is claimed is:
1. A modified natural killer (NK) cell, comprising
a CD37CD56+ NK cell phenotype; and
one or more dendritic cell surface antigens selected from HLA-DR, CD83 and CD86.
2. The modified NK cell of claim 1, wherein the modified NK cell is substantially free of CD1 lc cell surface antigen.
3. The modified NK cell of claim 1, wherein the modified NK cell comprises one or more of the NK cell phenotype selected from CD14", CD19", CD16+ and NKG2D+.
4. A pharmaceutical composition, comprising
(a) a modified NK cell of claim 1; and
(b) a pharmaceutically acceptable carrier or excipient.
5. The pharmaceutical composition of claim 4, wherein the modified NK cell is substantially free of CD1 lc cell surface antigen.
6. The pharmaceutical composition of claim 4, wherein the modified NK cell comprises one or more of the NK cell phenotype selected from CD 14", CD 19", CD16+ and NKG2D+.
7. A method of inhibiting cancer calls, comprising administering an effective amount of the modified NK cell of claim 1 to a subject in need thereof, wherein the cancer cells are inhibited.
8. The method of claim 7, wherein the modified NK cell is substantially free of CDl lc cell surface antigen.
9. The method of claim 7, wherein the modified NK cell comprises one or more of the NK cell phenotype selected from CD14", CD19", CD16+ and NKG2D+.
10. The method of claim 1, wherein the effective amount is about lx 103 to about lx 109 NK cells per dose.
11. A composition, comprising
a T helper 1 cytokine; and
a T cell growth factor.
12. The composition of claim 11, wherein said T helper 1 cytokine is gamma interferon (IFN- γ ).
13. The composition of claim 11, wherein said T cell growth factor is IL-15.
14. The composition of claim 11, further comprising IL-12.
15. The composition of claim 14, wherein the concentration of said IL-12 is about 0.1 ng/ml to less than 15 ng/ml.
16. The composition of claim 11, further comprising a hematopoietic cell medium.
17. The composition of claim 11, wherein the hematopoietic cell medium is X-vivo 20.
18. A method of culturing a modified NK cell of claim 1, comprising contacting a depleted NK cell substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25 with a composition,
wherein the composition comprise (a) a T helper 1 cytokine; and (b) a T-cell growth factor.
19. The method of claim 18, wherein said T helper 1 cytokine is IFN- γ .
20. The method of claim 18, wherein said T-cell growth factor is IL-15.
21. The method of claim 18, wherein the composition further comprising IL-12.
22. The method of claim 21, wherein the concentration of said IL-12 is about 0.1 ng/ml to less than 15 ng/ml.
23. The method of claim 18, wherein the composition further comprising a hematopoietic cell medium.
24. The method of claim 23, wherein the hematopoietic cell medium is X-vivo 20.
25. The method of claim 18, wherein the depleted NK cell is in contact with the composition for about one day to about 3 days.
26. The method of claim 21, wherein the depleted NK cell is in contact with the composition for about one day to about 3 days.
27. A method of culturing a modified NK cell of claim 1, comprising
(a) contacting a depleted NK cell with a first composition comprising IFN- γ and IL- 15; and
(b) contacting the depleted NK cell of step (a) with a second composition comprising IL-15, IL-12 and IFN- 7 ,
wherein the depleted NK cell is substantially free of one or more of the cell surface antigens selected from CD 14, CD 19 and CD25.
28. The method of claim 27, wherein the concentration of said IL-12 is about 0.1 ng/ml to less than 15 ng/ml.
29. The method of claim 27, wherein the first composition and second composition further comprise a hematopoietic cell medium.
30. The method of claim 29, wherein the hematopoietic cell medium is X-vivo 20.
31. The method of claim 27, wherein the depleted NK cell is in contact with the first composition for about 1 day to about 6 days.
32. The method of claim 27, wherein the depleted NK cell is in contact with the second composition for about 1 day to about 3 days.
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