WO2014049131A1 - Accurate blood test for the non-invasive diagnosis of non-alcoholic steatohepatitis - Google Patents

Accurate blood test for the non-invasive diagnosis of non-alcoholic steatohepatitis Download PDF

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WO2014049131A1
WO2014049131A1 PCT/EP2013/070223 EP2013070223W WO2014049131A1 WO 2014049131 A1 WO2014049131 A1 WO 2014049131A1 EP 2013070223 W EP2013070223 W EP 2013070223W WO 2014049131 A1 WO2014049131 A1 WO 2014049131A1
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biomarker reflecting
score
biomarker
reflecting
body weight
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Paul Calès
Jérôme BOURSIER
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Universite dAngers
Centre Hospitalier Universitaire dAngers
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Centre Hospitalier Universitaire dAngers
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/576Immunoassay; Biospecific binding assay; Materials therefor for hepatitis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701Details
    • G01N2333/4742Keratin; Cytokeratin
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90Enzymes; Proenzymes
    • G01N2333/91Transferases (2.)
    • G01N2333/91188Transferases (2.) transferring nitrogenous groups (2.6)
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/08Hepato-biliairy disorders other than hepatitis
    • G01N2800/085Liver diseases, e.g. portal hypertension, fibrosis, cirrhosis, bilirubin

Definitions

  • the present invention relates to the diagnosis of non-alcoholic steatohepatitis (NASH).
  • NASH non-alcoholic steatohepatitis
  • the present invention more specifically relates to a new and accurate blood test for the non-invasive diagnosis of non-alcoholic steatohepatitis, preferably in NAFLD patients.
  • BACKGROUND OF INVENTION FLD Fatty Liver Disease
  • FLD is commonly associated with alcohol or metabolic syndromes (such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy).
  • alcohol or metabolic syndromes such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy).
  • nutritional causes such as, for example, malnutrition, total parenteral nutrition, severe weight loss, refeeding syndrome, jejunoileal bypass, gastric bypass or jejunal diverticulosis with bacterial overgrowth
  • drugs and toxins such as, for example, amiodarone, methotrexate, diltiazem, highly active antiretroviral therapy, glucocorticoids, tamoxifen, environmental hepatotoxins
  • other diseases such as inflammatory bowel disease or HIV.
  • FLD encompasses a morphological spectrum consisting from the mildest type “liver steatosis” (fatty liver), called NAFL, to the potentially more serious type “steatohepatitis", called NASH, which is associated with liver-damaging inflammation and, sometimes, the formation of fibrous tissue.
  • steatohepatitis has the inherent propensity to progress towards the development of fibrosis then cirrhosis which can produce progressive, irreversible liver scarring or towards hepatocellular carcinoma (liver cancer).
  • liver steatosis has usually been accomplished by performing a liver biopsy in order to confirm FLD and determine the grading and staging of the disease, especially NASH.
  • biopsies can provide important information regarding the degree of liver damage, the procedure presents several limitations, such as sampling error, invasiveness, cost, pain for patients which in turn brings forth a certain reluctance to undergo such a procedure; and finally complications may arise from such procedure, which in some cases can even lead to mortality.
  • Ultrasonography is also used to diagnose liver steatosis.
  • this method is subjective as it is based on echo intensity (echogenicity) and special patterns of echoes (texture). As a result, it is not sensitive enough and often inaccurate, especially in patients with advanced fibrosis.
  • non-invasive biomarkers has gained importance in the field of hepatic diagnosis. Indeed, non-invasive methods for detecting the extent of alcoholic or non-alcoholic steatohepatitis in a patient have been described.
  • US2006/0172286 describes a non-invasive method for diagnosing alcoholic or nonalcoholic steatohepatitis in a patient comprising measuring the 3 biochemical markers ApoAl, ALT and AST in a sample from the patient.
  • the AASLD Practice Guideline (Chalasani et al, Hepatology, 55(6):2005- 2023, 2012) discloses the serum/plasma cytokeratine (CK)18 as a promising biomarker for identifying steatohepatitis.
  • CK18 serum/plasma cytokeratine
  • all the studies realized on CK18 as a biomarker utilized a study- specific cut-off value. Consequently, there is not an established cut-off value for identifying steatohepatitis using this biomarker.
  • the AASLD Practice Guideline thus concludes that although serum/plasma CK18 is a promising biomarker for identifying steatohepatitis, it may be premature to recommend in routine clinical practice, unless a solution is found.
  • This invention aims at providing the solution expected by the AASLD Practice Guideline, and provides tests that may use the serum/plasma CK18 biomarker. Also, this invention aims at overcoming the limitations and drawbacks of the prior art methods, that are resumed hereafter.
  • prior art methods have usually been developed in cohorts of patients undergoing bariatric surgery. These morbidly obese patients represent a very particular subgroup of NAFLD patients, and thus the external validation of blood tests calibrated in such cohorts is debatable.
  • pathological definition of NASH i.e. the main study endpoint, was heterogeneous among studies and not in accordance with the latest admitted definition (Sanyal et al, Hepatology, 54(l):344-353, 2011).
  • these tests have limited accuracy for the diagnosis of NASH. Finally, none of these tests has been externally and independently validated.
  • the Inventors thus aimed at developing a new blood test for the non-invasive diagnosis of NASH, as defined by the latest admitted pathological definition, in a well- representative cohort of NAFLD patients, wherein said blood test is more accurate than the tests of the prior art, such as, for example, more accurate than the test of US2006/0172286.
  • the present invention thus relates to an in-vitro non-invasive method for assessing the presence and/or severity of NASH lesions in the liver of a subject, wherein said method comprises the steps of: a. measuring in a sample of said subject at least one biomarker, preferably 1, 2, 3 or 4 biomarkers, selected from at least one of:
  • iii. at least one biomarker reflecting metabolic activity, and/or iv. at least one biomarker reflecting liver status; and b. combining said at least one biomarker measure in a mathematical function.
  • step (a) three of the following biomarkers are measured:
  • 11 at least one biomarker reflecting anthropometry, and/or
  • IV at least one biomarker reflecting liver status.
  • At step (a) at least one biomarker reflecting apoptosis and at least one of the following biomarkers are measured: i. at least one biomarker reflecting anthropometry, and/or
  • iii at least one biomarker reflecting liver status.
  • At step (a) at least one biomarker reflecting apoptosis and at least one biomarker reflecting anthropometry, and at least one biomarker reflecting metabolic activity are measured.
  • the method of the invention comprises the steps of: a. measuring in a sample of said subject:
  • biomarker reflecting apoptosis i. at least one biomarker reflecting apoptosis, wherein said biomarker reflecting apoptosis is selected from the group comprising cytokeratin 18
  • biomarker reflecting anthropometry wherein said biomarker reflecting anthropometry is selected from the group comprising body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof and iii. at least one biomarker reflecting metabolic activity, wherein said biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, a biomarker reflecting lipid metabolism, or any combination thereof, preferably a biomarker reflecting glucose metabolism and iv. optionally at least one biomarker reflecting liver status; and b. combining said biomarkers in a mathematical function.
  • said biomarker reflecting apoptosis is CK18.
  • said biomarker reflecting anthropometry is body mass index (BMI) or body weight, preferably body mass index (BMI).
  • said biomarker reflecting glucose activity is selected from the group comprising glycaemia, hyperglycemia, HbAlc, insulin, C peptide, HOMA, QUICKI antidiabetic treatment, diabetes, type 2 diabetes and impaired fasting glucose tolerance, preferably said biomarker reflecting glucose activity is glycaemia or hyperglycemia, and more preferably said biomarker reflecting glucose activity is hyperglycemia.
  • step (a) four of the following biomarkers are measured: i. at least one biomarker reflecting apoptosis, and
  • iv at least one biomarker reflecting liver status.
  • the biomarker reflecting apoptosis is selected from the group comprising cytokeratin 18 (CK18), CK18 M30, CK18 M65, AST, ALT and any combination thereof.
  • the biomarker reflecting anthropometry is selected from the group comprising body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof.
  • BMI body mass index
  • the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, a biomarker reflecting lipid metabolism, or any combination thereof.
  • the biomarker reflecting liver status is a biomarker reflecting liver fibrosis, preferably selected from the list comprising score of FIBROMETERTM, BARD score, NFSA score, APRI score, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, ferritin, platelets (PLT), AST/PLT, prothrombin time (PT) or prothrombin index (PI), INR (international normalized ratio), hyaluronic acid (HA or hyaluronate), haemoglobin, triglycerides, alpha-2 macroglobulin (A2M), gamma-glutamyl transpeptidase (GGT), urea, bilirubin, apolipoprotein Al (ApoAl),
  • the biomarker reflecting liver status is a biomarker reflecting liver function, preferably selected from the list comprising AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, gamma- glutamyltranspeptidase (GGT), bilirubine, gamma-globulins (GLB), urea, albumine (ALB), alcaline phosphatases (ALP), alpha GST, 5 'nucleotidase, ratios and mathematical combinations thereof.
  • the biomarker reflecting liver status is a data resulting from a physical method for assessing liver status, preferably issued from elastometry such as, for example, a FibroscanTM.
  • the biomarker reflecting liver status is a score resulting from a test selected from the group comprising FIBROMETERTM, CIRRHOMETERTM, BARD, NFSA, APRI, FIB-4, Forns, Hepascore, FibrotestTM, Fibrosure, QuantiMeter, CombiMeter, E-FibroMeter, NAFLD fibrosis score, ELF, FibrospectTM.
  • biomarkers are measured in step (a):
  • the mathematical function is a binary logistic regression, a multiple linear regression or any multivariate analysis.
  • the NASH lesion is borderline NASH or definite NASH, preferably definite NASH or borderline and definite NASH.
  • the subject is an animal, preferably a human.
  • the NASH lesions are associated to or caused by a liver disease, preferably selected from the list comprising metabolic syndrome, non-alcoholic fatty liver disease and alcoholic chronic liver disease.
  • the sample is a blood sample.
  • NAFLD Nonalcoholic Fatty Liver Disease
  • NASH Nonalcoholic Steatohepatitis
  • An object of the present invention is thus a method for measuring by non-invasive means (such as for example biomarkers) NASH lesions in the liver, and thus for diagnosing NASH in a subject.
  • the method of the invention is more accurate than the methods of the prior art.
  • the present invention thus relates to an in-vitro non-invasive method for assessing the presence and/or severity of NASH lesions in the liver of a subject, wherein said method comprises the steps of: a. measuring in a sample of said subject at least one biomarker, preferably 1, 2, 3 or 4 biomarkers, selected from at least one of:
  • At least one biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and/or
  • step (a) of the method of the invention at least one biomarker reflecting apoptosis is measured, and optionally at least one biomarker selected from at least one of: i. at least one biomarker reflecting anthropometry, and/or
  • At least one biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and/or
  • iii at least one biomarker reflecting liver status.
  • the method of the invention is for assessing the presence or the absence of NASH lesions in the liver of a subject. In another embodiment, the method of the invention is for diagnosing NASH in a subject.
  • the method of the invention is for assessing the severity of NASH lesions in the liver of a subject.
  • the mathematical combination of step (b) leads to a diagnostic score.
  • the diagnostic score may correspond to a probability for the subject to present NASH lesions.
  • the method of the invention leads to the classification of the patient in a class of a classification according to the value obtained at step (b), preferably according to the latest recommendations (Sanyal et al, 2011), i.e. the subject is diagnosed as having steatohepatitis corresponding to either definite steatohepatitis and/or borderline steatohepatitis; or no steatohepatitis.
  • the minimal criteria for the diagnosis of steatohepatits include the presence of more than 5% macrovesicular steatosis, inflammation and liver cell ballooning, typically with a predominantly centrilobular (acinar zone 3) distribution.
  • "definite steatohepatitis” such as, for example, “definite NASH” is defined by zone 3 accentuation of macrovesicular steatosis of any grade, hepatocellular ballooning of any degree, and lobular inflammatory infiltrates of any amount.
  • the NASH lesion is borderline NASH or definite NASH, preferably definite NASH.
  • the method of the invention is for classifying the subject in a class of another known or new classification of NASH.
  • At least one biomarker reflecting apoptosis, and at least one biomarker reflecting anthropometry are measured.
  • At least one biomarker reflecting apoptosis, and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
  • At least one biomarker reflecting apoptosis, and at least one biomarker reflecting liver status are measured.
  • At least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
  • At least one biomarker reflecting anthropometry and at least one biomarker reflecting liver status are measured.
  • At least one biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured.
  • three of the following biomarkers are measured in step (a): iv. at least one biomarker reflecting apoptosis, and/or
  • v. at least one biomarker reflecting anthropometry, and/or
  • biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and/or
  • At least one biomarker reflecting apoptosis and at least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
  • At least one biomarker reflecting apoptosis, and at least one biomarker reflecting anthropometry and at least one biomarker reflecting liver status are measured.
  • At least one biomarker reflecting apoptosis and at least one biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured.
  • At least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured.
  • four of the following biomarkers are measured in step (a): i. at least one biomarker reflecting apoptosis, and
  • biomarker reflecting metabolic activity preferably at least one biomarker reflecting glucose metabolism
  • iv. at least one biomarker reflecting liver status.
  • biomarkers reflecting apoptosis include, but are not limited to, cytokeratin 18 (CK18), CK18 M30, CK18 M65, aspartate aminotransferase (AST), alanine aminotransferase (ALT) and any combination thereof.
  • said biomarker reflecting apoptosis is CK18 or AST, more preferably CK18.
  • biomarkers reflecting anthropometry include, but are not limited to, body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof.
  • BMI body mass index
  • said biomarker reflecting anthropometry is selected from the group comprising BMI and body weight.
  • the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, or lipid metabolism, or any combination thereof.
  • the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism.
  • biomarkers reflecting glucose metabolism include, but are not limited to glycaemia or hyperglycemia, HbAlc, insulin, C peptide, HOMA, QUICKI antidiabetic treatment, diabetes, type 2 diabetes and impaired fasting glucose tolerance.
  • said biomarker reflecting glucose metabolism is hyperglycemia, glycemia or insulin. More preferably, said biomarker reflecting glucose metabolism is hyperglycemia or glycemia, and even more preferably hyperglycemia.
  • Hyperglycemia corresponds to a binary marker: the value of said marker is 0 if the subject does not present hyperglycemia, and 1 if the subject presents hyperglycemia. The skilled artisan knows how to determine if a subject presents or not hyperglycemia.
  • hyperglycemia corresponds to any abnormal blood glucose level, such as, for example, higher than about 7 mmol.L (i.e. about 126 mg/dL) or antidiabetic treatment required.
  • biomarkers reflecting lipid metabolism include, but are not limited to triglycerides, HDL cholesterol, LDL cholesterol, total cholesterol, adiponectin, leptin, resistin, lipid-lowering drugs and dyslipidemia.
  • biomarkers reflecting lipid metabolism is HDL cholesterol.
  • said biomarker reflecting metabolic activity is selected from the group comprising hyperglycemia, glycemia, and insulin.
  • HOMA or Homeostatic Model Assessment is a test based on a ratio of glycemia and insulin.
  • the biomarker reflecting liver status is a biomarker reflecting liver fibrosis.
  • biomarkers reflecting liver fibrosis include, but are not limited to, score of FIBROMETERTM, BARD score, NFSA score, APRI score, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, ferritin, platelets (PLT), AST/PLT, prothrombin time (PT) or prothrombin index (PI), INR (international normalized ratio), hyaluronic acid (HA or hyaluronate), haemoglobin, triglycerides, alpha-2 macroglobulin (A2M), gamma-glutamyl transpeptidase (GGT), urea, bilirubin, apolipoprotein Al (A
  • the biomarker reflecting liver status is a biomarker reflecting liver function.
  • biomarkers reflecting liver function include, but are not limited to, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, gamma-glutamyltranspeptidase (GGT), bilirubine, gammaglobulins (GLB), urea, albumine (ALB), alcaline phosphatases (ALP), alpha GST, 5 'nucleotidase, ratios and mathematical combinations thereof.
  • the biomarker reflecting liver status is a data resulting from a physical method for assessing liver status.
  • physical methods for assessing liver status include, but are not limited to, medical imaging data and clinical measurements, such as, for example, measurement of spleen, especially spleen length.
  • the physical method is selected from the group comprising ultrasonography, especially Doppler-ultrasonography and elastometry ultrasonography and velocimetry ultrasonography (preferred tests using said data are FibroscanTM, ARFI, VTE, supersonic imaging), MRI (Magnetic Resonance Imaging), and MNR (Magnetic Nuclear Resonance) as used in spectroscopy, especially MRI elastometry or velocimetry.
  • the data are Liver Stiffness Evaluation (LSE) data or spleen stiffness evaluation.
  • the data resulting from a physical method are issued from a FibroscanTM.
  • the biomarker reflecting liver status is a score resulting from a test selected from the list comprising FIBROMETERTM, CIRRHOMETERTM, BARD, NFSA, APRI, FIB-4, Forns, Hepascore, FibrotestTM, Fibrosure, QuantiMeter (Cales, Hepatology 2005;42: 1373-1381), CombiMeter, NAFLD fibrosis score, ELF, FibrospectTM.
  • BARD is a blood test based on three variables combined in a weighted sum of BMI, AST/ALT ratio and Diabetes Melitus.
  • NFSA NAFLD fibrosis score (NFS) of Angulo is a blood test based on age, hyperglycemia, body mass index, platelet count, albumin, and AST/ALT ratio. Forns is a blood test based on age, GGT, cholesterol, and platelet count.
  • APRI is a blood test based on platelet and AST.
  • ELF or European liver fibrosis is a blood test based on hyaluronic acid, P3P, TIMP-1 and age.
  • FibroSpectTM is a blood test based on hyaluronic acid, TEVIP-l and A2M.
  • FIB-4 is a blood test based on platelet, ASAT, ALT and age.
  • HEPASCORE is a blood test based on hyaluronic acid, bilirubin, alpha2-macroglobulin, GGT, age and sex.
  • FIBROTESTTM is a blood test based on alpha2-macroglobulin, haptoglobin, apolipoprotein Al, total bilirubin, GGT, age and sex.
  • FIBROSURETM is the American name of FIBROTESTTM.
  • FIBROMETERTM and CIRRHOMETERTM together form to a family of blood tests, the content of which depends on the cause of chronic liver disease and the diagnostic target, and this blood test family is called FM family and detailed in the Table below:
  • A2M alpha-2 macroglobulin
  • HA hyaluronic acid
  • PI prothrombin index
  • PLT platelets
  • Bili bilirubin
  • Fer ferritin
  • Glu glucose
  • FS Fibroscan
  • b HA may be replaced by GGT
  • COMBIMETERTM or E-FibroMeterTM is a family of tests based on the mathematical combination of variables of the FM family (as detailed in the Table above) or of the result of a test of the FM family with elastometry, such as, for example, FIBROSCANTM result.
  • said mathematical combination is a binary logistic regression.
  • QUANTIMETERTM is a family of tests based on the mathematical combination of variables of the FM family targeted for the area of fibrosis.
  • the biomarker reflecting liver status is selected from the group comprising or consisting of BARD score, haptoglobin, NFSA score, APRI score, albumin, FibroMeterTM score, hyaluronate, alpha-2-macro globulin and ApoAl.
  • 1, 2, 3 4 or more of the following biomarkers are measured in step (a): - CK18, hyperglycemia and BMI,
  • the method of the invention does not comprise measuring in step (a) a biomarker reflecting lipid metabolism.
  • the method of the invention does not comprise measuring in step (a) CK-18 M30, CK18 M65, resistin and adiponectin. In one embodiment, the method of the invention does not comprise measuring in step (a) at least four biomarkers selected from the group consisting of adiponectin, CK-18, CK-18 M30, C-reactive protein, insulin-like growth factor binding protein 1 and alanine aminotransferase. In one embodiment, the method of the invention does not comprise measuring in step (a) adiponectin, CK-18, CK-18 M30, insulin-like growth factor binding protein 1 and body mass index (BMI).
  • BMI body mass index
  • the method of the invention does not comprise measuring in step (a) diabetes, sex, body mass index, triglycerides, CK-18 and CK-18 M30. In one embodiment, the method of the invention does not comprise measuring in step (a) type 2 diabetes, triglycerides, TEVIP-l and aspartate aminotransferase.
  • the mathematical function is a binary logistic regression, a multiple linear regression or any multivariate analysis.
  • the subject is an animal, preferably a human.
  • the subject is a male.
  • the subject is a female.
  • the subject presents a BMI superior to 25 (i.e. the subject is overweight), preferably superior to 30 (i.e. the subject is obese).
  • the subject is diagnosed with NAFLD.
  • the subject is at risk of developing NASH lesions. Said risk may for example correspond to a genetic predisposition to NASH lesions, a familial history of NASH lesions or to overweight or obesity.
  • the NASH lesions are associated to or caused by a liver disease, preferably selected from the list comprising alcohol syndromes, metabolic syndromes (such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy), non-alcoholic fatty liver disease and alcoholic chronic liver disease.
  • a liver disease preferably selected from the list comprising alcohol syndromes, metabolic syndromes (such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy), non-alcoholic fatty liver disease and alcoholic chronic liver disease.
  • the NASH lesions are associated to or caused by nutritional causes (such as, for example, malnutrition, total parenteral nutrition, severe weight loss, refeeding syndrome, jejuno-ileal bypass, gastric bypass or jejunal diverticulosis with bacterial overgrowth).
  • nutritional causes such as, for example, malnutrition, total parenteral nutrition, severe weight loss, refeeding syndrome, jejuno-ileal bypass, gastric bypass or jejunal diverticulosis with bacterial overgrowth).
  • the NASH lesions are associated to or caused by various drugs and toxins (such as, for example, amiodarone, methotrexate, diltiazem, highly active antiretroviral therapy, glucocorticoids, tamoxifen, environmental hepato toxins).
  • drugs and toxins such as, for example, amiodarone, methotrexate, diltiazem, highly active antiretroviral therapy, glucocorticoids, tamoxifen, environmental hepato toxins.
  • the NASH lesions are associated to or caused by inflammatory bowel disease or HIV.
  • biomarkers are measured in a sample obtained, preferably previously obtained, from the subject.
  • the sample is a bodily fluid sample, such as, for example, a blood or urine sample.
  • Methods for measuring biomarkers in a sample are well-known from the skilled artisan. Examples of such methods include, but are not limited to, biochemistry, immunology, molecular biology or omic technologies, and physical techniques, such as, for example, infrared spectroscopies.
  • the method of the present invention is computerized.
  • Another object of the present invention is thus a computer software for implementing the method of the invention.
  • the present invention also relates to an in-vitro non-invasive diagnostic test for implementing the in-vitro non-invasive method as hereinabove described.
  • the present invention also relates to a kit for implementing the in-vitro non-invasive method as hereinabove described.
  • the kit comprises means for measuring biomarkers in a sample obtained, preferably previously obtained, from a subject.
  • said means are PCR primers, buffers and reagents for measuring the expression of biomarkers in the sample from the subject.
  • said means are antibodies, such as, for example, monoclonal antibodies, for detecting proteins in the sample from the subject.
  • antibodies may be used for measuring CK-18, and are commercially available, such as for example, from Santa Cruz Biotech or Abeam.
  • said means are standard reagents, such as, for example, reagents for measuring glucose concentration in the sample from the subject, preferably in a blood sample from the subject.
  • Figure 1 is a graph showing CK18 concentration as a function of NASH subgroups (no, borderline, definite).
  • Figure 2 is a graph showing the sensitivity, specificity, negative predictive value (NPV), positive predictive value (PPV), diagnostic accuracy (DA) and Youden index (sensitivity + specificity -1) as a function of NASH-score results.
  • the present invention is further illustrated by the following example.
  • NAFLD liver steatosis on liver biopsy after exclusion of concomitant steatosis-inducing drugs (such as corticosteroids, tamoxifene, amiodarone, or methotrexate), excessive alcohol consumption (>30 g/day in men or >20 g/day in women), chronic hepatitis B or C infection, and histological evidence of other concomitant chronic liver disease. Patients were excluded if they had cirrhosis complication (ascites, variceal bleeding, systemic infection, or hepatocellular carcinoma). The study protocol was conformed to the ethical guidelines of the current Declaration of Helsinki and all patients gave informed written consent.
  • concomitant steatosis-inducing drugs such as corticosteroids, tamoxifene, amiodarone, or methotrexate
  • excessive alcohol consumption >30 g/day in men or >20 g/day in women
  • chronic hepatitis B or C infection chronic
  • Arterial hypertension corresponded to systolic arterial pressure >130 mm Hg and/or diastolic arterial pressure >85 mm Hg or antihypertensive drug; hyperglycaemia to fasting serum glucose >5.55 mmol/L or anti-diabetic drug; hypertriglyceridemia to serum triglycerides > ⁇ .l mmol/L or lipid-lowering drug; and low HDL cholesterol to serum HDL-cholesterol ⁇ 1.1 mmol/L in male or ⁇ 1.3 mmol/L in female, or lipid-lowering drug.
  • Serum level of apoptotic caspase-3 generated CK-18 fragments was measured on frozen samples stored at -80°C, using the M30- Apoptosense enzyme-linked immunosorbent assay kit (PEVIVA, Bromma, Sweden). 5 blood tests for the diagnosis of NASH were calculated according to published formula: HAIR (Dixon Gy 2001), Palekar score (Palekar LI 2006), Gholam score (Gholam AJG 2007), Hossain score (Hosain CGH 2009), and Nice Model (Anty APT 2010).
  • NASH Newcastle disease virus
  • Pathological diagnosis of NASH - Pathological examination of liver biopsies was performed by a senior expert specialized in hepatology, blinded for patient data. NASH was diagnosed as "no", “borderline”, or "definite” according to the latest recommended definition (Sanyal et al, 2011). Histological grading and staging of NAFLD were scored according to the NASH Clinical Research Network system (Kleiner 2005). NAFLD activity score (NAS), ranging from 0 to 8, corresponded to the sum of scores for steatosis, lobular inflammation and hepatocellular ballooning.
  • NAS NAFLD activity score
  • Quantitative variables were expressed as mean + standard deviation. Correlations between quantitative variables were determined by using the Spearman correlation coefficient (Rs). To identify the best combination of variables for the diagnosis of NASH, we performed a stepwise forward binary logistic regression including clinical data and blood parameters as independent variables. The regression score of this multivariate analysis was used to construct a new blood test ranging from 0 to 1. Diagnostic accuracy of this blood test was evaluated by the Area Under the Receiver Operating Characteristics (AUROC) and the rate of patients included in the intervals of >90% negative or positive predictive values. Statistical analyses were performed using SPSS version 18.0 software (IBM, Armonk, NY, USA).
  • Characteristics of the 159 patients included are detailed in Table 1. 59.7% were male and mean age was 56.4+11.6 years. Mean biopsy length was 30+14 mm. 64 patients (40%) had no NASH, 19 (12%) had borderline NASH, and 76 (48%) had definite NASH. Mean NAS and rate of patients with F>2 stages between no, borderline, and definite NASH was, respectively: 2.0+1.1, 3.4+0.8, 4.3+1.1 (p ⁇ 0.001) and 37.5%, 73.7%, 84.2 (p ⁇ 0.001).
  • Haptoglobin (g/L) 1.24 + 0.60 1.07 + 0.55 1.34 + 0.52 1.34 + 0.64 0.040
  • Apolipoproteine Al (g/L) 1.48 + 0.35 1.54 + 0.37 1.39 + 0.36 1.45 + 0.33 0.339
  • CK18 level was significantly different among the 3 NASH subgroups (p ⁇ 0.001) but post hoc analysis showed the difference was significant only between no NASH and borderline or definite NASH ( Figure 1).
  • AUROC of CK18 for the diagnosis of borderline/definite NASH was 0.743+0.048, and 0.716+0.048 for the diagnosis of definite NASH (Table 2).
  • AUROC of HAIR, Palekar score, Gholam score, Hossain score, and Nice Model for the diagnosis of borderline/definite or definite NASH are depicted in Table 2.
  • Table 3 Main independent predictors of borderline/definite NASH by stepwise forward binary logistic regression.
  • Table 4 Summary of combinations of independent predictors of borderline/definite NASH by stepwise forward binary logistic regression.
  • b Bard, NFS A, APRI and FibroMeter are fibrosis tests: they can be replaced by other known non-invasive fibrosis tests.
  • c Haptoglobin , hyaluronate, A2M, ApoaAl are single fibrosis markers: they can be replaced by other known non-invasive single fibrosis markers.
  • Negative and positive predictive values as a function of the NASH-Score results are depicted in Figure 2.
  • the NASH-score included 16.5% of the patients in the interval of >90% negative predictive value for the diagnosis of borderline/definite NASH, 53.0% in the interval of >90% positive predictive value, and 30.4% in the remained grey zone.

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Description

ACCURATE BLOOD TEST FOR THE NON-INVASIVE DIAGNOSIS OF NONALCOHOLIC STEATOHEPATITIS
FIELD OF INVENTION The present invention relates to the diagnosis of non-alcoholic steatohepatitis (NASH). The present invention more specifically relates to a new and accurate blood test for the non-invasive diagnosis of non-alcoholic steatohepatitis, preferably in NAFLD patients.
BACKGROUND OF INVENTION FLD (Fatty Liver Disease) describes a wide range of potentially reversible conditions involving the liver, wherein large vacuoles of triglyceride fat accumulate in hepatocytes via the process of steatosis (i.e. the abnormal retention of lipids within a cell).
FLD is commonly associated with alcohol or metabolic syndromes (such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy). However, it can also be due to nutritional causes (such as, for example, malnutrition, total parenteral nutrition, severe weight loss, refeeding syndrome, jejunoileal bypass, gastric bypass or jejunal diverticulosis with bacterial overgrowth), as well as various drugs and toxins (such as, for example, amiodarone, methotrexate, diltiazem, highly active antiretroviral therapy, glucocorticoids, tamoxifen, environmental hepatotoxins) and other diseases such as inflammatory bowel disease or HIV.
Whether it is AFLD (Alcoholic Fatty Liver Disease) or NAFLD (Non-Alcoholic Fatty Liver Disease), FLD encompasses a morphological spectrum consisting from the mildest type "liver steatosis" (fatty liver), called NAFL, to the potentially more serious type "steatohepatitis", called NASH, which is associated with liver-damaging inflammation and, sometimes, the formation of fibrous tissue. In fact, steatohepatitis has the inherent propensity to progress towards the development of fibrosis then cirrhosis which can produce progressive, irreversible liver scarring or towards hepatocellular carcinoma (liver cancer).
Because these diseases can be potentially reversed if diagnosed early enough, or at least their consequences limited, it is crucial to be able to provide the medical field with tools allowing such an early, rapid and precise diagnosis.
For a long time, the diagnosis of liver steatosis has usually been accomplished by performing a liver biopsy in order to confirm FLD and determine the grading and staging of the disease, especially NASH. Although biopsies can provide important information regarding the degree of liver damage, the procedure presents several limitations, such as sampling error, invasiveness, cost, pain for patients which in turn brings forth a certain reluctance to undergo such a procedure; and finally complications may arise from such procedure, which in some cases can even lead to mortality.
Ultrasonography is also used to diagnose liver steatosis. However, this method is subjective as it is based on echo intensity (echogenicity) and special patterns of echoes (texture). As a result, it is not sensitive enough and often inaccurate, especially in patients with advanced fibrosis.
In recent years, the use of non-invasive biomarkers has gained importance in the field of hepatic diagnosis. Indeed, non-invasive methods for detecting the extent of alcoholic or non-alcoholic steatohepatitis in a patient have been described. For example, US2006/0172286 describes a non-invasive method for diagnosing alcoholic or nonalcoholic steatohepatitis in a patient comprising measuring the 3 biochemical markers ApoAl, ALT and AST in a sample from the patient.
Moreover, the AASLD Practice Guideline (Chalasani et al, Hepatology, 55(6):2005- 2023, 2012) discloses the serum/plasma cytokeratine (CK)18 as a promising biomarker for identifying steatohepatitis. However, all the studies realized on CK18 as a biomarker utilized a study- specific cut-off value. Consequently, there is not an established cut-off value for identifying steatohepatitis using this biomarker. The AASLD Practice Guideline thus concludes that although serum/plasma CK18 is a promising biomarker for identifying steatohepatitis, it may be premature to recommend in routine clinical practice, unless a solution is found.
This invention aims at providing the solution expected by the AASLD Practice Guideline, and provides tests that may use the serum/plasma CK18 biomarker. Also, this invention aims at overcoming the limitations and drawbacks of the prior art methods, that are resumed hereafter. First, prior art methods have usually been developed in cohorts of patients undergoing bariatric surgery. These morbidly obese patients represent a very particular subgroup of NAFLD patients, and thus the external validation of blood tests calibrated in such cohorts is debatable. Second, pathological definition of NASH, i.e. the main study endpoint, was heterogeneous among studies and not in accordance with the latest admitted definition (Sanyal et al, Hepatology, 54(l):344-353, 2011). Third, these tests have limited accuracy for the diagnosis of NASH. Finally, none of these tests has been externally and independently validated.
The Inventors thus aimed at developing a new blood test for the non-invasive diagnosis of NASH, as defined by the latest admitted pathological definition, in a well- representative cohort of NAFLD patients, wherein said blood test is more accurate than the tests of the prior art, such as, for example, more accurate than the test of US2006/0172286.
SUMMARY
The present invention thus relates to an in-vitro non-invasive method for assessing the presence and/or severity of NASH lesions in the liver of a subject, wherein said method comprises the steps of: a. measuring in a sample of said subject at least one biomarker, preferably 1, 2, 3 or 4 biomarkers, selected from at least one of:
i. at least one biomarker reflecting apoptosis, and/or
ii. at least one biomarker reflecting anthropometry, and/or
iii. at least one biomarker reflecting metabolic activity, and/or iv. at least one biomarker reflecting liver status; and b. combining said at least one biomarker measure in a mathematical function.
In one embodiment, at step (a) three of the following biomarkers are measured:
1 at least one biomarker reflecting apoptosis, and/or
11 at least one biomarker reflecting anthropometry, and/or
111 at least one biomarker reflecting metabolic activity, and/or
IV at least one biomarker reflecting liver status.
In one embodiment, at step (a) at least one biomarker reflecting apoptosis and at least one of the following biomarkers are measured: i. at least one biomarker reflecting anthropometry, and/or
ii. at least one biomarker reflecting metabolic activity, and/or
iii. at least one biomarker reflecting liver status.
In one embodiment, at step (a) at least one biomarker reflecting apoptosis and at least one biomarker reflecting anthropometry, and at least one biomarker reflecting metabolic activity are measured.
In one embodiment, the method of the invention comprises the steps of: a. measuring in a sample of said subject:
i. at least one biomarker reflecting apoptosis, wherein said biomarker reflecting apoptosis is selected from the group comprising cytokeratin 18
(CK18), CK18 M30, CK18 M65, AST, ALT and any combination thereof and
ii. at least one biomarker reflecting anthropometry, wherein said biomarker reflecting anthropometry is selected from the group comprising body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof and iii. at least one biomarker reflecting metabolic activity, wherein said biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, a biomarker reflecting lipid metabolism, or any combination thereof, preferably a biomarker reflecting glucose metabolism and iv. optionally at least one biomarker reflecting liver status; and b. combining said biomarkers in a mathematical function. In one embodiment, said biomarker reflecting apoptosis is CK18.
In one embodiment, said biomarker reflecting anthropometry is body mass index (BMI) or body weight, preferably body mass index (BMI).
In one embodiment, said biomarker reflecting glucose activity is selected from the group comprising glycaemia, hyperglycemia, HbAlc, insulin, C peptide, HOMA, QUICKI antidiabetic treatment, diabetes, type 2 diabetes and impaired fasting glucose tolerance, preferably said biomarker reflecting glucose activity is glycaemia or hyperglycemia, and more preferably said biomarker reflecting glucose activity is hyperglycemia.
In one embodiment, at step (a) four of the following biomarkers are measured: i. at least one biomarker reflecting apoptosis, and
11. at least one biomarker reflecting anthropometry, and
in at least one biomarker reflecting metabolic activity, and
iv at least one biomarker reflecting liver status.
In one embodiment, the biomarker reflecting apoptosis is selected from the group comprising cytokeratin 18 (CK18), CK18 M30, CK18 M65, AST, ALT and any combination thereof.
In one embodiment, the biomarker reflecting anthropometry is selected from the group comprising body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof.
In one embodiment, the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, a biomarker reflecting lipid metabolism, or any combination thereof. In one embodiment, the biomarker reflecting liver status is a biomarker reflecting liver fibrosis, preferably selected from the list comprising score of FIBROMETER™, BARD score, NFSA score, APRI score, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, ferritin, platelets (PLT), AST/PLT, prothrombin time (PT) or prothrombin index (PI), INR (international normalized ratio), hyaluronic acid (HA or hyaluronate), haemoglobin, triglycerides, alpha-2 macroglobulin (A2M), gamma-glutamyl transpeptidase (GGT), urea, bilirubin, apolipoprotein Al (ApoAl), type III procollagen N-terminal propeptide (P3NP), Type IV collagen, gamma-globulins (GBL), haptolobulin, osteopontine, sodium (Na), albumin (ALB), ferritine (Fer), Glucose (Glu), alkaline phosphatases (ALP), YKL-40 (human cartilage glycoprotein 39), tissue inhibitor of matrix metalloproteinase 1 (TIMP-1), TGF, and matrix metalloproteinase 1 (MMP-1) to 9 (MMP-9), ratios and mathematical combinations thereof.
In one embodiment, wherein the biomarker reflecting liver status is a biomarker reflecting liver function, preferably selected from the list comprising AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, gamma- glutamyltranspeptidase (GGT), bilirubine, gamma-globulins (GLB), urea, albumine (ALB), alcaline phosphatases (ALP), alpha GST, 5 'nucleotidase, ratios and mathematical combinations thereof. In one embodiment, the biomarker reflecting liver status is a data resulting from a physical method for assessing liver status, preferably issued from elastometry such as, for example, a Fibroscan™.
In one embodiment, the biomarker reflecting liver status is a score resulting from a test selected from the group comprising FIBROMETER™, CIRRHOMETER™, BARD, NFSA, APRI, FIB-4, Forns, Hepascore, Fibrotest™, Fibrosure, QuantiMeter, CombiMeter, E-FibroMeter, NAFLD fibrosis score, ELF, Fibrospect™.
In one embodiment, the following biomarkers are measured in step (a):
- CK18, hyperglycemia and BMI,
- BMI, AST and glycemia, - BMI, CK18 and BARD score,
- BMI, CK18 and glycemia,
- Body weight, CK18 and glycemia,
- CK18, BMI, hyperglycemia and insulin,
- CK18 and BMI,
- CK18, body weight, insulin, and haptoglobin,
- CK18, body weight, NFS A score, APRI score and insulin,
- CK18, body weight and insulin,
- CK18, body weight and NFS A score,
- CK 18 and body weight,
- CK 18 , BMI and body weight,
- CK18 and albumin,
- BMI and HDL cholesterol,
- AST, HDL cholesterol and BMI,
- BMI,
- CK 18 and HDL cholesterol,
- CK18,
- HDL cholesterol,
- CK18, body weight, NFS A score, and insulin,
- CK18, body weight, APRI score and insulin,
- CK18, body weight, score of FibroMeter and insulin,
- CK18, body weight, hyaluronate and insulin,
- CK18, body weight, alpha-2-macroglobulin and insulin, or
- CK18 body weight, ApoAl and insulin. In one embodiment, the mathematical function is a binary logistic regression, a multiple linear regression or any multivariate analysis.
In one embodiment, the NASH lesion is borderline NASH or definite NASH, preferably definite NASH or borderline and definite NASH.
In one embodiment, the subject is an animal, preferably a human. In one embodiment, the NASH lesions are associated to or caused by a liver disease, preferably selected from the list comprising metabolic syndrome, non-alcoholic fatty liver disease and alcoholic chronic liver disease.
In one embodiment, the sample is a blood sample.
DEFINITIONS
In the present invention, the following terms have the following meanings:
"Nonalcoholic Fatty Liver Disease (NAFLD)" encompasses the entire spectrum of fatty liver disease in individuals without significant alcohol consumption, ranging from fatty liver to steatohepatitis and cirrhosis (definition of the AASLD Practice
Guideline, Chalasani et al, Hepatology, 55(6):2005-2023, 2012).
"Nonalcoholic Steatohepatitis (NASH)" refers to the presence of hepatic steatosis and inflammation with hepatocyte injury (ballooning) with or without fibrosis (definition of the AASLD Practice Guideline, Chalasani et al, Hepatology, 55(6):2005-2023, 2012).
"Accuracy" of a diagnostic test refers to the proportion of correctly classified patients by a diagnostic test.
"About" preceding a figure means plus or less 10% of the value of said figure.
DETAILED DESCRIPTION
An object of the present invention is thus a method for measuring by non-invasive means (such as for example biomarkers) NASH lesions in the liver, and thus for diagnosing NASH in a subject. In one embodiment of the invention, the method of the invention is more accurate than the methods of the prior art. The present invention thus relates to an in-vitro non-invasive method for assessing the presence and/or severity of NASH lesions in the liver of a subject, wherein said method comprises the steps of: a. measuring in a sample of said subject at least one biomarker, preferably 1, 2, 3 or 4 biomarkers, selected from at least one of:
i. at least one biomarker reflecting apoptosis, and/or
ii. at least one biomarker reflecting anthropometry, and/or
iii. at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and/or
iv. at least one biomarker reflecting liver status; and b combining said at least one biomarker measure in a mathematical function.
In one embodiment, in step (a) of the method of the invention, at least one biomarker reflecting apoptosis is measured, and optionally at least one biomarker selected from at least one of: i. at least one biomarker reflecting anthropometry, and/or
ii. at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and/or
iii. at least one biomarker reflecting liver status.
In one embodiment of the invention, the method of the invention is for assessing the presence or the absence of NASH lesions in the liver of a subject. In another embodiment, the method of the invention is for diagnosing NASH in a subject.
In another embodiment of the invention, the method of the invention is for assessing the severity of NASH lesions in the liver of a subject.
In one embodiment of the invention, the mathematical combination of step (b) leads to a diagnostic score. According to this embodiment, the diagnostic score may correspond to a probability for the subject to present NASH lesions.
In another embodiment, the method of the invention leads to the classification of the patient in a class of a classification according to the value obtained at step (b), preferably according to the latest recommendations (Sanyal et al, 2011), i.e. the subject is diagnosed as having steatohepatitis corresponding to either definite steatohepatitis and/or borderline steatohepatitis; or no steatohepatitis. According to the classification described by Sanyal et al (2011), the minimal criteria for the diagnosis of steatohepatits, such as, for example, of NASH, include the presence of more than 5% macrovesicular steatosis, inflammation and liver cell ballooning, typically with a predominantly centrilobular (acinar zone 3) distribution. Moreover, "definite steatohepatitis", such as, for example, "definite NASH", is defined by zone 3 accentuation of macrovesicular steatosis of any grade, hepatocellular ballooning of any degree, and lobular inflammatory infiltrates of any amount. "Borderline steatohepatitis" does not meet classical criteria for steatohepatitis, because the lesions may be predominantly in acinar zone 3, but liver cell ballooning is not classic or is absent. In one embodiment of the invention, the NASH lesion is borderline NASH or definite NASH, preferably definite NASH.
In another embodiment, the method of the invention is for classifying the subject in a class of another known or new classification of NASH.
In a first embodiment of the invention, at least one biomarker reflecting apoptosis, and at least one biomarker reflecting anthropometry are measured.
In a second embodiment of the invention, at least one biomarker reflecting apoptosis, and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
In a third embodiment of the invention, at least one biomarker reflecting apoptosis, and at least one biomarker reflecting liver status are measured.
In a fourth embodiment of the invention, at least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
In a fifth embodiment of the invention, at least one biomarker reflecting anthropometry and at least one biomarker reflecting liver status are measured.
In a sixth embodiment of the invention, at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured. In one embodiment of the invention, three of the following biomarkers are measured in step (a): iv. at least one biomarker reflecting apoptosis, and/or
v. at least one biomarker reflecting anthropometry, and/or
vi. at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and/or
vii. at least one biomarker reflecting liver status.
In a first embodiment, at least one biomarker reflecting apoptosis, and at least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, are measured.
In a second embodiment, at least one biomarker reflecting apoptosis, and at least one biomarker reflecting anthropometry and at least one biomarker reflecting liver status are measured.
In a third embodiment, at least one biomarker reflecting apoptosis and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured.
In a fourth embodiment, at least one biomarker reflecting anthropometry and at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and at least one biomarker reflecting liver status are measured. In another embodiment of the invention, four of the following biomarkers are measured in step (a): i. at least one biomarker reflecting apoptosis, and
ii. at least one biomarker reflecting anthropometry, and
iii. at least one biomarker reflecting metabolic activity, preferably at least one biomarker reflecting glucose metabolism, and
iv. at least one biomarker reflecting liver status.
Examples of biomarkers reflecting apoptosis include, but are not limited to, cytokeratin 18 (CK18), CK18 M30, CK18 M65, aspartate aminotransferase (AST), alanine aminotransferase (ALT) and any combination thereof. Preferably, said biomarker reflecting apoptosis is CK18 or AST, more preferably CK18.
Examples of biomarkers reflecting anthropometry include, but are not limited to, body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof. Preferably, said biomarker reflecting anthropometry is selected from the group comprising BMI and body weight.
In one embodiment of the invention, the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, or lipid metabolism, or any combination thereof. Preferably, the biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism.
Examples of biomarkers reflecting glucose metabolism include, but are not limited to glycaemia or hyperglycemia, HbAlc, insulin, C peptide, HOMA, QUICKI antidiabetic treatment, diabetes, type 2 diabetes and impaired fasting glucose tolerance. Preferably, said biomarker reflecting glucose metabolism is hyperglycemia, glycemia or insulin. More preferably, said biomarker reflecting glucose metabolism is hyperglycemia or glycemia, and even more preferably hyperglycemia.
Hyperglycemia corresponds to a binary marker: the value of said marker is 0 if the subject does not present hyperglycemia, and 1 if the subject presents hyperglycemia. The skilled artisan knows how to determine if a subject presents or not hyperglycemia. In one embodiment, hyperglycemia corresponds to any abnormal blood glucose level, such as, for example, higher than about 7 mmol.L (i.e. about 126 mg/dL) or antidiabetic treatment required.
Examples of biomarkers reflecting lipid metabolism include, but are not limited to triglycerides, HDL cholesterol, LDL cholesterol, total cholesterol, adiponectin, leptin, resistin, lipid-lowering drugs and dyslipidemia. Preferably, biomarkers reflecting lipid metabolism is HDL cholesterol.
Preferably, said biomarker reflecting metabolic activity is selected from the group comprising hyperglycemia, glycemia, and insulin. HOMA or Homeostatic Model Assessment; is a test based on a ratio of glycemia and insulin.
QUICKI or quantitative assessment check index is a test equivalent to homeostatasis model assessment (HOMA). In one embodiment of the invention, the biomarker reflecting liver status is a biomarker reflecting liver fibrosis. Examples of biomarkers reflecting liver fibrosis include, but are not limited to, score of FIBROMETER™, BARD score, NFSA score, APRI score, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, ferritin, platelets (PLT), AST/PLT, prothrombin time (PT) or prothrombin index (PI), INR (international normalized ratio), hyaluronic acid (HA or hyaluronate), haemoglobin, triglycerides, alpha-2 macroglobulin (A2M), gamma-glutamyl transpeptidase (GGT), urea, bilirubin, apolipoprotein Al (ApoAl), type III procollagen N-terminal propeptide (P3NP), Type IV collagen, gamma-globulins (GBL), haptoglobin, osteopontine, sodium (Na), albumin (ALB), ferritine (Fer), Glucose (Glu), alkaline phosphatases (ALP), YKL-40 (human cartilage glycoprotein 39), tissue inhibitor of matrix metalloproteinase 1 (TIMP-1), TGF, and matrix metalloproteinase 1 (MMP-1) to 9 (MMP-9), ratios and mathematical combinations thereof.
In one embodiment of the invention, the biomarker reflecting liver status is a biomarker reflecting liver function. Examples of biomarkers reflecting liver function include, but are not limited to, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, gamma-glutamyltranspeptidase (GGT), bilirubine, gammaglobulins (GLB), urea, albumine (ALB), alcaline phosphatases (ALP), alpha GST, 5 'nucleotidase, ratios and mathematical combinations thereof.
In one embodiment of the invention, the biomarker reflecting liver status is a data resulting from a physical method for assessing liver status. Examples of physical methods for assessing liver status include, but are not limited to, medical imaging data and clinical measurements, such as, for example, measurement of spleen, especially spleen length. According to an embodiment, the physical method is selected from the group comprising ultrasonography, especially Doppler-ultrasonography and elastometry ultrasonography and velocimetry ultrasonography (preferred tests using said data are Fibroscan™, ARFI, VTE, supersonic imaging), MRI (Magnetic Resonance Imaging), and MNR (Magnetic Nuclear Resonance) as used in spectroscopy, especially MRI elastometry or velocimetry. Preferably, the data are Liver Stiffness Evaluation (LSE) data or spleen stiffness evaluation. According to a preferred embodiment of the invention, the data resulting from a physical method are issued from a Fibroscan™.
In one embodiment of the invention, the biomarker reflecting liver status is a score resulting from a test selected from the list comprising FIBROMETER™, CIRRHOMETER™, BARD, NFSA, APRI, FIB-4, Forns, Hepascore, Fibrotest™, Fibrosure, QuantiMeter (Cales, Hepatology 2005;42: 1373-1381), CombiMeter, NAFLD fibrosis score, ELF, Fibrospect™.
BARD is a blood test based on three variables combined in a weighted sum of BMI, AST/ALT ratio and Diabetes Melitus.
NFSA : NAFLD fibrosis score (NFS) of Angulo is a blood test based on age, hyperglycemia, body mass index, platelet count, albumin, and AST/ALT ratio. Forns is a blood test based on age, GGT, cholesterol, and platelet count.
APRI is a blood test based on platelet and AST.
ELF or European liver fibrosis is a blood test based on hyaluronic acid, P3P, TIMP-1 and age.
FibroSpect™ is a blood test based on hyaluronic acid, TEVIP-l and A2M. FIB-4 is a blood test based on platelet, ASAT, ALT and age.
HEPASCORE is a blood test based on hyaluronic acid, bilirubin, alpha2-macroglobulin, GGT, age and sex.
FIBROTEST™ is a blood test based on alpha2-macroglobulin, haptoglobin, apolipoprotein Al, total bilirubin, GGT, age and sex.
FIBROSURE™ is the American name of FIBROTEST™. FIBROMETER™ and CIRRHOMETER™ together form to a family of blood tests, the content of which depends on the cause of chronic liver disease and the diagnostic target, and this blood test family is called FM family and detailed in the Table below:
Figure imgf000017_0001
FM: FibroMeter, CM: CirrhoMeter,
A2M: alpha-2 macroglobulin, HA: hyaluronic acid, PI: prothrombin index, PLT: platelets, Bili: bilirubin, Fer: ferritin, Glu: glucose, FS: Fibroscan
Number of variables
b HA may be replaced by GGT
COMBIMETER™ or E-FibroMeter™ is a family of tests based on the mathematical combination of variables of the FM family (as detailed in the Table above) or of the result of a test of the FM family with elastometry, such as, for example, FIBROSCAN™ result. In one embodiment, said mathematical combination is a binary logistic regression.
QUANTIMETER™ is a family of tests based on the mathematical combination of variables of the FM family targeted for the area of fibrosis.
Preferably, the biomarker reflecting liver status is selected from the group comprising or consisting of BARD score, haptoglobin, NFSA score, APRI score, albumin, FibroMeter™ score, hyaluronate, alpha-2-macro globulin and ApoAl.
In one embodiment, in the method of the invention, 1, 2, 3 4 or more of the following biomarkers are measured in step (a): - CK18, hyperglycemia and BMI,
- BMI, AST and glycemia,
- BMI, CK18 and BARD score,
- BMI, CK 18 and glycemia,
- Body weight, CK 18 and glycemia,
- CK18, BMI, hyperglycemia and insulin,
- CK18 and BMI,
- CK18, body weight, insulin, and haptoglobin,
- CK18, body weight, NFS A score, APRI score and insulin,
- CK18, body weight and insulin,
- CK18, body weight and NFS A score,
- CK18 and body weight,
- CK 18 , BMI and body weight,
- CK18 and albumin,
- BMI and HDL cholesterol,
- AST, HDL cholesterol and BMI,
- BMI,
- CK 18 and HDL cholesterol,
- CK18,
- HDL cholesterol,
- CK18, body weight, NFS A score, and insulin,
- CK18, body weight, APRI score and insulin,
- CK18, body weight, score of FibroMeter and insulin,
- CK18, body weight, hyaluronate and insulin,
- CK18, body weight, alpha-2-macroglobulin and insulin, or
- CK18 body weight, ApoAl and insulin.
In one embodiment, the method of the invention does not comprise measuring in step (a) a biomarker reflecting lipid metabolism.
In one embodiment, the method of the invention does not comprise measuring in step (a) CK-18 M30, CK18 M65, resistin and adiponectin. In one embodiment, the method of the invention does not comprise measuring in step (a) at least four biomarkers selected from the group consisting of adiponectin, CK-18, CK-18 M30, C-reactive protein, insulin-like growth factor binding protein 1 and alanine aminotransferase. In one embodiment, the method of the invention does not comprise measuring in step (a) adiponectin, CK-18, CK-18 M30, insulin-like growth factor binding protein 1 and body mass index (BMI).
In one embodiment, the method of the invention does not comprise measuring in step (a) diabetes, sex, body mass index, triglycerides, CK-18 and CK-18 M30. In one embodiment, the method of the invention does not comprise measuring in step (a) type 2 diabetes, triglycerides, TEVIP-l and aspartate aminotransferase.
In one embodiment of the invention, the mathematical function is a binary logistic regression, a multiple linear regression or any multivariate analysis. One skilled in the art may found in the prior art all information related to the mathematical function. In one embodiment of the invention, the subject is an animal, preferably a human. In one embodiment, the subject is a male. In another embodiment, the subject is a female.
In one embodiment, the subject presents a BMI superior to 25 (i.e. the subject is overweight), preferably superior to 30 (i.e. the subject is obese).
In one embodiment of the invention, the subject is diagnosed with NAFLD. In one embodiment of the invention, the subject is at risk of developing NASH lesions. Said risk may for example correspond to a genetic predisposition to NASH lesions, a familial history of NASH lesions or to overweight or obesity.
In one embodiment of the invention, the NASH lesions are associated to or caused by a liver disease, preferably selected from the list comprising alcohol syndromes, metabolic syndromes (such as, for example, diabetes, hypertension, dyslipidemia, abetalipoproteinemia, glycogen storage diseases, Weber-Christian disease, Wolman disease, acute fatty liver of pregnancy and lipodystrophy), non-alcoholic fatty liver disease and alcoholic chronic liver disease.
In another embodiment of the invention, the NASH lesions are associated to or caused by nutritional causes (such as, for example, malnutrition, total parenteral nutrition, severe weight loss, refeeding syndrome, jejuno-ileal bypass, gastric bypass or jejunal diverticulosis with bacterial overgrowth).
In another embodiment of the invention, the NASH lesions are associated to or caused by various drugs and toxins (such as, for example, amiodarone, methotrexate, diltiazem, highly active antiretroviral therapy, glucocorticoids, tamoxifen, environmental hepato toxins).
In another embodiment of the invention, the NASH lesions are associated to or caused by inflammatory bowel disease or HIV.
According to the invention, biomarkers are measured in a sample obtained, preferably previously obtained, from the subject. In one embodiment of the invention, the sample is a bodily fluid sample, such as, for example, a blood or urine sample.
Methods for measuring biomarkers in a sample are well-known from the skilled artisan. Examples of such methods include, but are not limited to, biochemistry, immunology, molecular biology or omic technologies, and physical techniques, such as, for example, infrared spectroscopies.
In one embodiment of the invention, the method of the present invention is computerized. Another object of the present invention is thus a computer software for implementing the method of the invention.
The present invention also relates to an in-vitro non-invasive diagnostic test for implementing the in-vitro non-invasive method as hereinabove described.
The present invention also relates to a kit for implementing the in-vitro non-invasive method as hereinabove described. According to the invention, the kit comprises means for measuring biomarkers in a sample obtained, preferably previously obtained, from a subject.
In one embodiment, said means are PCR primers, buffers and reagents for measuring the expression of biomarkers in the sample from the subject. In one embodiment, said means are antibodies, such as, for example, monoclonal antibodies, for detecting proteins in the sample from the subject. For example, antibodies may be used for measuring CK-18, and are commercially available, such as for example, from Santa Cruz Biotech or Abeam.
In one embodiment, said means are standard reagents, such as, for example, reagents for measuring glucose concentration in the sample from the subject, preferably in a blood sample from the subject.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 is a graph showing CK18 concentration as a function of NASH subgroups (no, borderline, definite).
Figure 2 is a graph showing the sensitivity, specificity, negative predictive value (NPV), positive predictive value (PPV), diagnostic accuracy (DA) and Youden index (sensitivity + specificity -1) as a function of NASH-score results.
EXAMPLES
The present invention is further illustrated by the following example.
PATIENTS AND METHODS
Patients
Patients with biopsy-proven NAFLD were consecutively included from January 2002 to March 2012 at the Angers University Hospital. NAFLD was defined as liver steatosis on liver biopsy after exclusion of concomitant steatosis-inducing drugs (such as corticosteroids, tamoxifene, amiodarone, or methotrexate), excessive alcohol consumption (>30 g/day in men or >20 g/day in women), chronic hepatitis B or C infection, and histological evidence of other concomitant chronic liver disease. Patients were excluded if they had cirrhosis complication (ascites, variceal bleeding, systemic infection, or hepatocellular carcinoma). The study protocol was conformed to the ethical guidelines of the current Declaration of Helsinki and all patients gave informed written consent.
Methods Clinical assessment - Regular treatment, weight, height, and blood arterial pressure were recorded the day of the liver biopsy. Arterial hypertension, hyperglycaemia, hypertriglyceridemia, and low HDL cholesterol were defined according to the joint statement of the International Diabetes Federation, National Heart, Lung, and Blood Institute, American Heart Association, World Heart Federation, International Atherosclerosis Society, and International Association for the Study of Obesity (Alberti, Circulation 2009). Arterial hypertension corresponded to systolic arterial pressure >130 mm Hg and/or diastolic arterial pressure >85 mm Hg or antihypertensive drug; hyperglycaemia to fasting serum glucose >5.55 mmol/L or anti-diabetic drug; hypertriglyceridemia to serum triglycerides >\ .l mmol/L or lipid-lowering drug; and low HDL cholesterol to serum HDL-cholesterol <1.1 mmol/L in male or < 1.3 mmol/L in female, or lipid-lowering drug.
Blood samples - Fasting blood samples were taken the day or within the week preceding liver biopsy. All blood assays were performed in the laboratory of Angers Hospital and included: AST, ALT, gamma GT, alkaline phosphatases, total bilirubin, glucose, insulin, HbAlc, triglycerides, total cholesterol, HDL cholesterol, LDL cholesterol, ferritin, urea, sodium, creatinine, apolipoprotein Al, albumin, haptoglobin, alpha2 macroglobulin, hyaluronate, prothrombin index, haemoglobin, leucocytes, neutrophils, monocytes, and platelets. Serum level of apoptotic caspase-3 generated CK-18 fragments was measured on frozen samples stored at -80°C, using the M30- Apoptosense enzyme-linked immunosorbent assay kit (PEVIVA, Bromma, Sweden). 5 blood tests for the diagnosis of NASH were calculated according to published formula: HAIR (Dixon Gy 2001), Palekar score (Palekar LI 2006), Gholam score (Gholam AJG 2007), Hossain score (Hosain CGH 2009), and Nice Model (Anty APT 2010).
Pathological diagnosis of NASH - Pathological examination of liver biopsies was performed by a senior expert specialized in hepatology, blinded for patient data. NASH was diagnosed as "no", "borderline", or "definite" according to the latest recommended definition (Sanyal et al, 2011). Histological grading and staging of NAFLD were scored according to the NASH Clinical Research Network system (Kleiner 2005). NAFLD activity score (NAS), ranging from 0 to 8, corresponded to the sum of scores for steatosis, lobular inflammation and hepatocellular ballooning.
Statistical analysis
Quantitative variables were expressed as mean + standard deviation. Correlations between quantitative variables were determined by using the Spearman correlation coefficient (Rs). To identify the best combination of variables for the diagnosis of NASH, we performed a stepwise forward binary logistic regression including clinical data and blood parameters as independent variables. The regression score of this multivariate analysis was used to construct a new blood test ranging from 0 to 1. Diagnostic accuracy of this blood test was evaluated by the Area Under the Receiver Operating Characteristics (AUROC) and the rate of patients included in the intervals of >90% negative or positive predictive values. Statistical analyses were performed using SPSS version 18.0 software (IBM, Armonk, NY, USA).
RESULTS Patients
Characteristics of the 159 patients included are detailed in Table 1. 59.7% were male and mean age was 56.4+11.6 years. Mean biopsy length was 30+14 mm. 64 patients (40%) had no NASH, 19 (12%) had borderline NASH, and 76 (48%) had definite NASH. Mean NAS and rate of patients with F>2 stages between no, borderline, and definite NASH was, respectively: 2.0+1.1, 3.4+0.8, 4.3+1.1 (p<0.001) and 37.5%, 73.7%, 84.2 (p<0.001).
Table 1: Patients characteristics at inclusion
All NASH
No Borderline Definite P
Patients (n) 159 64 19 76 -
Age (years) 56.4 + 11.6 56.4 + 11.3 51.1 + 16.2 57.8 + 10.1 0.325
Male sex (%) 59.7 62.5 68.4 55.3 0.489
BMI (kg/m2) 30.9 + 5.4 28.7 + 4.7 31.0 + 7.3 32.8 + 4.7 <0.001
Hypertension (%) 75.9 69.8 57.9 85.5 0.014
Hyperglycaemia (%) b 67.3 50.0 57.9 84.2 <0.001
Hypertriglyceridemia (%) c 58.3 48.4 42.1 70.7 0.010
Low HDL cholesterol (%) d 60.1 56.4 66.7 61.6 0.718
Biopsy length (mm) 30.0 + 13.7 29.3 + 13.8 26.6 + 13.7 31.3 + 13.7 0.354
NAS 3.3 + 1.5 2.0 + 1.1 3.4 + 0.8 4.3 + 1.1 <0.001
Kleiner F>2 (%) 64.2 37.5 73.7 84.2 <0.001
ALT (UI/L) 65 + 36 56 + 32 82 + 34 68 + 38 0.002
AST (UI/L) 46 + 22 39 + 19 47 + 15 51 + 25 <0.001
Gamma GT (UI/L) 148 + 165 146 + 171 122 + 152 156 + 164 0.280
Alkaline phosphatases (UI/L) 79 + 39 84 + 45 72 + 21 78 + 38 0.722
Total bilirubin (μπιοΙ/L) 10.0 + 5.6 11.0 + 6.4 10.0 + 7.2 9.1 + 4.3 0.211
Albumin (g/L) 44.0 + 3.7 44.8 + 3.7 45.1 + 3.2 43.1 + 3.5 0.006
Haptoglobin (g/L) 1.24 + 0.60 1.07 + 0.55 1.34 + 0.52 1.34 + 0.64 0.040
Alpha2macroglobulin (mg/dl) 207 + 86 190 + 81 202 + 89 220 + 88 0.119
Hyaluronate ^g/L) 76 + 98 68 + 115 65 + 61 86 + 91 0.174
Apolipoproteine Al (g/L) 1.48 + 0.35 1.54 + 0.37 1.39 + 0.36 1.45 + 0.33 0.339
Insuline (μυΐ/ml) 23.2 + 28.1 14.5 + 12.8 16.0 + 8.5 31.0 + 35.8 <0.001
HbAlc (%) 6.4 + 1.3 6.0 + 1.5 5.9 + 0.9 6.8 + 1.2 <0.001
Ferritin ^g/L) 412 + 417 380 + 345 377 + 215 447 + 502 0.762
Leucocytes (G/L) 6.4 + 1.8 5.9 + 1.7 6.7 + 2.1 6.6 + 1.7 0.022
CK18 (UI/L) 303 + 371 168 + 123 249 + 131 397 + 463 <0.001 α Systolic arterial pressure >130 mm Hg and/or diastolic arterial pressure >85 mm Hg or antihypertensive drug
b Fasting serum glucose >5.55 mmol/L or anti-diabetic drug
c Serum triglycerides >1.7 mmol/L or lipid-lowering drug
d Low serum HDL-cholesterol (<1.1 mmol/L in male or <1.3 mmol/L in female) or lipid-lowering drug Accuracy of CK18 and published blood tests for the diagnosis of NASH
CK18 level was significantly different among the 3 NASH subgroups (p<0.001) but post hoc analysis showed the difference was significant only between no NASH and borderline or definite NASH (Figure 1). AUROC of CK18 for the diagnosis of borderline/definite NASH was 0.743+0.048, and 0.716+0.048 for the diagnosis of definite NASH (Table 2). AUROC of HAIR, Palekar score, Gholam score, Hossain score, and Nice Model for the diagnosis of borderline/definite or definite NASH are depicted in Table 2.
Table 2: AUROC of CK18 and blood tests for the diagnostic of NASH
Blood test Diagnostic target
Borderline/definite NASH Definite NASH
CK18 0.743 + 0.048 0.716 + 0.048
HAIR 0.622 + 0.051 0.645 + 0.050
Palekar score 0.651 + 0.044 0.677 + 0.043
Gholam score 0.789 + 0.036 0.779 + 0.037
Hossain score 0.613 + 0.046 0.532 + 0.046
Nice Model 0.733 + 0.052 0.670 + 0.055
NASH Score 0.846 + 0.039 0.804 + 0.043 Development of the new NASH-score
We used a stepwise forward binary logistic regression to identify the independent predictors of NASH and to develop the new blood tests for NASH. Because binary logistic regression implies a binary diagnostic target, we chose to pool borderline with definite NASH versus no NASH. Indeed, the rate of F>2 patients was not significantly different between borderline and definite NASH subgroups (73.7% vs 84.2%, p=0.320), but significantly higher than in the subgroup having no NASH (p<0.005). Moreover, a recent systematic review has shown that liver inflammation is a strong predictor of progression to advanced fibrosis in patients with NASH (Argo, JH 2009).
By multivariate analysis, the main independent predictors of borderline/definite NASH were BMI, CK18, and hyperglycaemia (Table 3). The regression formula of the multivariate analysis was: R = (0.185*BMI) + (0.006*CK18) + (1.234*hyperglycaemia [0: no, 1: yes]) - 7.277. The new NASH-score was calculated as follow: 1 / 1 + (exp [- R]), and ranged from 0 to 1.
Table 3: Main independent predictors of borderline/definite NASH by stepwise forward binary logistic regression.
Step Variable P OR (95% CI) P
1st BMI 0.003 1.203 (1.066-1.358) 0.185
2nd CK18 0.001 1.006 (1.002-1.010) 0.006
3rd Hyperglycaemia 0.034 3.436 (1.095-10.782) 1.234
- Constant - - -7.277
We also performed other multivariate analyses by successively excluding one of the three main independent predictors of borderline/definite NASH. We found 26 other scores including independent predictor(s) (Table 4). This table shows that the common core of all these scores is the combination of three types of markers: one reflecting apoptosis, one reflecting anthropometry and another one reflecting metabolic activity. A fourth optional type is marker or test reflecting liver fibrosis.
Table 4: Summary of combinations of independent predictors of borderline/definite NASH by stepwise forward binary logistic regression.
Figure imgf000027_0001
main score
b Bard, NFS A, APRI and FibroMeter are fibrosis tests: they can be replaced by other known non-invasive fibrosis tests. c Haptoglobin , hyaluronate, A2M, ApoaAl are single fibrosis markers: they can be replaced by other known non-invasive single fibrosis markers.
Diagnostic accuracy of the NASH score
AUROC of the NASH-score for the diagnosis of borderline/definite NASH was 0.846+0.039 vs 0.743+0.048 for CK18 (p=0.0098) and 0.774+0.047 for BMI (p=0.0287). AUROC of the NASH-score for the diagnosis of definite NASH was 0.804+0.043 vs 0.716+0.048 for CK18 (p=0.0347) and 0.755+0.048 for BMI (p=0.1413). AUROC of the NASH score for the diagnosis of borderline/definite NASH was significantly higher than the AUROCs of the previously published blood tests for NASH (p<0.017) excepted versus the Gholam score (p=0.170). AUROC of the NASH score for the diagnosis of definite NASH was significantly higher than the AUROCs of the previously published blood tests for NASH (p<0.057) excepted versus the Gholam score (p=0.436).
Negative and positive predictive values as a function of the NASH-Score results are depicted in Figure 2. The NASH-score included 16.5% of the patients in the interval of >90% negative predictive value for the diagnosis of borderline/definite NASH, 53.0% in the interval of >90% positive predictive value, and 30.4% in the remained grey zone. The NASH score was well-correlated with the NAS: Rs=0.578 (p<0.001), versus Rs=0.292 (p=0.001) for the HAIR, Rs=0.184 (p=0.022) for the Palekar score, Rs=0.451 (p<0.001) for the Gholam score, Rs=0.312 (p<0.001) for the Hossain score, Rs=0.529 (p<0.001) for the Nice Model, and Rs=0.579 (p<0.001) for CK18.

Claims

An in-vitro non-invasive method for assessing the presence and/or severity of NASH lesions in the liver of a subject, wherein said method comprises the steps of: a. measuring in a sample of said subject:
i. at least one biomarker reflecting apoptosis, wherein said biomarker reflecting apoptosis is selected from the group comprising cytokeratin 18 (CK18), CK18 M30, CK18 M65, AST, ALT and any combination thereof and
ii. at least one biomarker reflecting anthropometry, wherein said biomarker reflecting anthropometry is selected from the group comprising body mass index (BMI), body weight, age, sex, waist circumference, abdominal height, hip circumference, waist/hip ratio and any combination thereof and iii. at least one biomarker reflecting metabolic activity, wherein said biomarker reflecting metabolic activity is a biomarker reflecting glucose metabolism, a biomarker reflecting lipid metabolism, or any combination thereof, preferably a biomarker reflecting glucose metabolism and iv. optionally at least one biomarker reflecting liver status; and b. combining said biomarkers in a mathematical function.
The method according to claim 1, wherein said biomarker reflecting apoptosis is CK18.
The method according to claim 1 or 2, wherein said biomarker reflecting anthropometry is body mass index (BMI) or body weight, preferably body mass index (BMI).
The method according to anyone of claims 1 to 3, wherein said biomarker reflecting glucose activity is selected from the group comprising glycaemia, hyperglycemia, HbAlc, insulin, C peptide, HOMA, QUICKI antidiabetic treatment, diabetes, type 2 diabetes and impaired fasting glucose tolerance, preferably said biomarker reflecting glucose activity is glycaemia or hyperglycemia, and more preferably said biomarker reflecting glucose activity is hyperglycemia.
The method according to anyone of claims 1 to 4, wherein at step (a) four of the following biomarkers are measured: i. at least one biomarker reflecting apoptosis, and
ii. at least one biomarker reflecting anthropometry, and iii. at least one biomarker reflecting metabolic activity, and iv. at least one biomarker reflecting liver status.
The method according to anyone of claims 1 to 5, wherein the biomarker reflecting liver status is a biomarker reflecting liver fibrosis, preferably selected from the list comprising score of FIBROMETER™, BARD score, NFSA score, APRI score, AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, ferritin, platelets (PLT), AST/PLT, prothrombin time (PT) or prothrombin index (PI), INR (international normalized ratio), hyaluronic acid (HA or hyaluronate), haemoglobin, triglycerides, alpha-2 macroglobulin (A2M), gamma- glutamyl transpeptidase (GGT), urea, bilirubin, apolipoprotein Al (ApoAl), type III procollagen N-terminal propeptide (P3NP), Type IV collagen, gamma-globulins (GBL), haptolobulin, osteopontine, sodium (Na), albumin (ALB), ferritine (Fer), Glucose (Glu), alkaline phosphatases (ALP), YKL-40 (human cartilage glycoprotein 39), tissue inhibitor of matrix metalloproteinase 1 (TIMP-1), TGF, and matrix metalloproteinase 1 (MMP-1) to 9 (MMP-9), ratios and mathematical combinations thereof.
The method according to anyone of claims 1 to 5, wherein the biomarker reflecting liver status is a biomarker reflecting liver function, preferably selected from the list comprising AST (aspartate aminotransferase), ALT (alanine aminotransferase), AST/ALT, AST.ALT, gamma-glutamyltranspeptidase (GGT), bilirubine, gamma-globulins (GLB), urea, albumine (ALB), alcaline phosphatases (ALP), alpha GST, 5 'nucleotidase, ratios and mathematical combinations thereof The method according to anyone of claims 1 to 5, wherein the biomarker reflecting liver status is a data resulting from a physical method for assessing liver status, preferably issued from a Fibroscan™.
The method according to anyone of claims 1 to 5, wherein the biomarker reflecting liver status is a score resulting from a test selected from the group comprising FIBROMETER™, CIRRHOMETER™, BARD, NFSA, APRI, FIB-4, Forns, Hepascore, Fibrotest™, Fibrosure, QuantiMeter, CombiMeter, NAFLD fibrosis score, ELF, Fibrospect™.
The method according to anyone of claims 1 to 9, wherein the following biomarkers are measured in step (a):
CK18, hyperglycemia and BMI,
- BMI, AST and glycemia,
- BMI, CK18 and BARD score,
- BMI, CK 18 and glycemia,
Body weight, CK18 and glycemia,
CK18, BMI, hyperglycemia and insulin,
- CK18 and BMI,
CK18, body weight, insulin, and haptoglobin,
CK18, body weight, NFSA score, APRI score and insulin,
CK18, body weight and insulin,
- CK18, body weight and NFSA score,
CK18 and body weight,
- CK 18 , BMI and body weight,
CK18 and albumin,
- BMI and HDL cholesterol,
- AST, HDL cholesterol and BMI,
- BMI,
- CK 18 and HDL cholesterol,
- CK18,
HDL cholesterol, CK18, body weight, NFS A score, and insulin,
CK18, body weight, APRI score and insulin,
CK18, body weight, score of FibroMeter and insulin,
CK18, body weight, hyaluronate and insulin,
- CK18, body weight, alpha-2-macroglobulin and insulin, or
CK18 body weight, ApoAl and insulin.
11. The method according to anyone of claims 1 to 10 wherein the mathematical function is a binary logistic regression, a multiple linear regression or any multivariate analysis. 12. The method according to anyone of claims 1 to 11, wherein the NASH lesion is borderline NASH or definite NASH, preferably definite NASH or borderline and definite NASH.
13. The method according to anyone of claims 1 to 12, wherein the subject is an animal, preferably a human. 14. The method according to anyone of claims 1 to 13, wherein the NASH lesions are associated to or caused by a liver disease, preferably selected from the list comprising metabolic syndrome, non-alcoholic fatty liver disease and alcoholic chronic liver disease.
15. The method according to anyone of claims 1 to 14, wherein the sample is a blood sample.
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