WO2013175240A1 - Methods of evolutionary synthesis including embodied chemical syntheses - Google Patents
Methods of evolutionary synthesis including embodied chemical syntheses Download PDFInfo
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- WO2013175240A1 WO2013175240A1 PCT/GB2013/051390 GB2013051390W WO2013175240A1 WO 2013175240 A1 WO2013175240 A1 WO 2013175240A1 GB 2013051390 W GB2013051390 W GB 2013051390W WO 2013175240 A1 WO2013175240 A1 WO 2013175240A1
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Definitions
- the present invention provides a process for the generation of a product having a series of properties desired by a user.
- the invention provides an investigative tool to allow the user to explore many possible product forms, and to identify the product having a desirable combination of chemical and physical features.
- the exploration of the product structural and compositional space is guided by automated evolutionary processing.
- the traditional discovery process will generally take the form of a series of batch processes. An initial group of products will be prepared, and a subset of products will be identified having promising characteristics. These products will inform the preparation of a second group of products, with the expectation that further promising products will be identified, some of which will be superior to the originally identified subset of products. Further sets of products may be prepared, and each subsequent preparation is intended to identify products of superior activity. Once a product is identified as having the right combination of features for use, a subsequent scale up synthesis is undertaken to provide useful quantifies of material, for example for further testing or for use. Discovery processes that look to identify improved methods of synthesis are conducted in a similar manner. it has long been recognised that the discovery process requires improvement.
- optimisation processes which may be regarded as a form of a limited discovery process.
- An optimisation procedure takes an original lead product and attempts to improve its properties.
- the process of optimisation is usually a conservative one: the new products that are produced share many of the structural and compositional parts of the original lead.
- the optimisation processes is rarely permitted to explore product space that is structurally and compositionally diverse.
- the present invention generally provides a process for generating a product having characteristics that meet a user's specification.
- the process of the invention allows the development of inorganic structures through an inorganic evolutionary process.
- the components driving the evolution are inorganic materials, however co-evolution with organic or biological materials is also possible.
- the process of the invention is an exploratory system that allows the user to prepare many different products.
- the preparation of a diverse product range allows the process control system to generate an understanding of which inputs may provide desirable traits and which do not.
- the system is capable of finding products having the physical and chemical characteristics that are set by the user in the specification.
- the exploration and generation of new products for use may be referred to as an evolution.
- the invention allows evolved chemical reactions to be investigated. This is broadly achieved using three elements: (i) a chemical process system including a sensor array, (ii) a feedback simplex / GA-managed control system, and (iii) chemical building blocks that can be explored over a large parameter space. By combining these three elements the system can utilise feedback and selection mechanisms based on spectroscopic properties of the system, molecules or materials that are evolved.
- the system identifies a route to explore and ultimately climb the fitness landscape and thereby discovering the best solution for the fitness function.
- the optimal molecule or materia! is prepared by the system meaning that the discovery stage does not need to be translated from a computer model to the laboratory as a separate step.
- the elements of the platform are a population of building blocks (chemical inputs), a reactor/reaction to connect the blocks, optionally in the presence of physical inputs, a kinetic system to move the blocks, a sensor system and interrogator to detect a property of the connected blocks, and a decision system, such as a genetic algorithm to control the reaction of building blocks on the basis of sensor feedback.
- the platform may be used in a discovery process which, in real time, embodies the evolutionary process by coupling computational (in siiico) with physical (in materia) events and processing. This allows chemical exploration to begin from a random start point and to move through a combinatorial parameter space using continuous evaluation of the outputs from the reactor system.
- the present invention provides a process that utilises flow chemistry techniques for the generation of products.
- the flow chemistry methods are used in combination with analytical methodologies and computer controlled feedback steps to provide a complete and integrated discovery system.
- the process allows a continuous production of product material to rapidly generate product collections.
- the system is highly adaptable, and may be used to generate a wide range of product forms.
- the flow system also permits the generation of sizeable quantities of product, and may be used to scale up the production of desirable product forms as they are identified.
- the integration of a flow chemistry system together with an analytical system and a control system in a self-contained discovery set up is believed to provide a useful technical contribution over the art.
- a process for the generation of a product having one or more characteristics that meet or exceed a user specification comprising the steps of:
- (B) a flow chemistry system wherein the system comprises a series of chemical inputs in fluid communication with a reaction space, and the system optionally comprises one or more physical inputs, wherein the physical inputs are deliverable to one or more of the chemical inputs and/or are deliverable to the reaction space;
- control system is provided with a genetic algorithm for selecting combinations of chemical and physical inputs
- the first combination is a subset of all the available physical and chemical inputs.
- the first combination may be regarded as the initial input population.
- the second and subsequent combinations are subsets of all the available physical and chemical inputs, and each combination is unique.
- the flow chemistry system operates continuously to provide the first, second and further products.
- the selection of the second combination in step (v), and further combinations in step (viii), is a selection made by the control system in response to the characteristics of earlier products, and their fitness against the user specification.
- the control system over a series of product preparations, will explore the product space through the addition, replacement or removal of chemical and physical inputs, either randomly or by design. Random changes may be useful in exploring alternative product space. Designed changes are those changes that are made where the control system identifies a correlation between an input or a combination of inputs and a desirable product characteristic. Changes may be made to bring together inputs that are recognised as resulting in useful products. Step (v) therefore permits the genetic algorithm to select a second combination of chemical inputs.
- Step (v) may only be undertaken once the preceding steps (iii) and (iv) are complete.
- step of selecting a second combination of chemical inputs, optionally together with physical inputs is directly responsive to the product prepared in step (ii).
- step (viii) may only be undertaken once the preceding steps (vi) and (vii) are complete.
- step of selecting a subsequent, such as third or fourth, combination of chemical inputs, optionally together with physical inputs is directly responsive to the product prepared in step (v).
- the flow system operates continuously.
- the first combination of chemical and physical inputs may be a random selection from the series of chemical and physical inputs.
- the user allows the system to select a starting point from which to explore the available product space.
- the user does not bias the process by applying his prejudices to the system.
- the product of the first combination of chemical and physical inputs is assessed against the user specification, if the first product meets or exceeds a minimum threshold, the system may select, using the genetic algorithm, a second combination of chemical and physical inputs. However, where the first product does not meet a minimum threshold, the system may select, such as randomly select, a further combination that is randomly removed from the first combination of chemical and physical inputs.
- the second and subsequent products may differ from the first product and from each other in one or more of the measured characteristics. These differences may be substantial or they may be marginal.
- composition or structure of the products may be different. It is preferred that the process permits the production of products having large differences in structure or composition. The process should also permit the preparation of products having subtle differences in structure or composition. By allowing the formation of subtly and widely different products in one process, the process attempts to maximise the chances of finding a product that will meet the user specification.
- the process may further comprise the step of (ix) producing further quantities of a product meeting or exceeding the user specification.
- step (ix) the user thereby provides a scale up synthesis of the desirable product.
- the process of the invention may be used to identify and provide meaningful quantities of material, for use or for further confirmatory analysis.
- the present invention also provides the products obtained or obtainable from the processes of the invention.
- a process for the generation of a method for producing a product the method having one or more parameters that meet or exceed a user specification, the process comprising the steps of:
- (B) a flow chemistry system wherein the system comprises a series of chemical inputs in fluid communication with a reaction space, and the system optionally comprises one or more physical inputs, wherein the physical inputs are deliverable to one or more of the chemical inputs and/or are deliverable to the reaction space;
- control system is provided with a genetic algorithm for selecting combinations of chemical and physical inputs
- the invention also provides apparatus for use in the methods of the invention.
- the apparatus comprises a flow chemistry system, an analytical system and a control system, as described in detail herein.
- a control system which is suitably programmed to control the steps of the process of the invention.
- FIG. 1 is a schematic of a flow chemistry system for use in the process of the invention.
- the system illustrated is for use in the preparation of crystalline polyoxomolybdate compounds.
- the system is shown with a series of chemical inputs in fluid communication and under the control of a computer control system (left).
- the products from individual combinations of chemical inputs are collected separately in a 5 ⁇ 10 grid of test tubes (middle).
- a sample crystal product is shown for one of the nanoscale polyoxomoiybdates obtained (middle).
- the polyoxomoiybdates structures identified include ⁇ o36 ⁇ , ⁇ Mo154 ⁇ , ⁇ Mo 132 ⁇ , ⁇ Mo102 ⁇ and ⁇ Mo368 ⁇ (right).
- the clusters are shown roughly to scale.
- Figure 2 is a table depicting relative flow rates for the reagents used in the preparation of nanoscale polyoxomoiybdates in the system shown schematically in Figure 1 . Moving down rows a-e the concentration of reagent increases as the flow rate of the wafer input is decreased relative to the other reagents. The increased concentration of reagent is shown as an increase in shading down the columns. Moving across columns A-J the ratio of the acid to the molybdate reagent increases.
- the increased concentration of acid is shown as a colour gradient across the columns, it can be seen that changes in the flow rates of a few reagents provide as many as 50 reaction products, where each product is prepared from a reaction mixture having a distinct combination of reagent concentration and pH.
- Figure 3 shows the variation in the pH of the reaction mixture in a reaction sequence for the intended production of (a) ⁇ Mo36 ⁇ and (b) ⁇ Mo154 ⁇ ,
- the pH varies periodically in all cases as the ratios of the flow rates for the acid and molybdate increase for each dilution factor. With each periodic repeat in the pH variation, the acidity of the reaction mixture is changed. Data points for reactions resulting in successful crystallization are highlighted.
- the reaction numbers correspond to the fractions collected from the first to fifth rows from the table of Figure 2 (i.e. fractions 1 -10 correspond to combinations aA-aJ, 1 1 -20 to bA-bJ, 21 -30 to cA-cJ, 31 -40 to dA-dJ, and 41 -50 to eA-eJ).
- Figure 4 shows the variation in the absorbance across a range of wavelengths for products collected in a flow synthesis of ⁇ Mo154 ⁇ products. Samples were diluted in a ratio of 1 :16 with distilled water and filtered before absorbance measurements. The reaction numbers correspond to the fractions collected from the first to fifth rows from the table of Figure 2.
- FIG. 5 is a schematic of a flow chemistry system for use in the process of the invention.
- the system illustrated is for use in the preparation of Mn clusters.
- the system is shown with a series of chemical inputs in fluid communication and under the control of a computer control system (left).
- the products from individual combinations of chemical inputs are collected separately in a 5 ⁇ 10 grid of test tubes (middle).
- the Mn clusters identified are shown as bail and stick representations where Mn, magenta; CI, green; N, light blue; O, red; C, grey; and hydrogen atoms are omitted for clarity.
- the analytical system is not shown.
- Figure 6 is a contour plot of percentage yield of Mn30(Et-sao)3(MeOH)3(CI04) (6) as a function of Mn concentration ([Mn]) and iigand concentration ([L]). The trend shows that optimum yields are obtained where the ratio of [Mn] to [L] is 1 :1 and each is present at a concentration greater than 0.25 mol L "1 .
- Mn 3 0(Et-sao)3(MeOH)3(CI04) is prepared in the flow chemistry system of Figure 5.
- Figure 7 shows the structures corresponding to the po!yoxometalate structures synthesized in one example of the invention. Left: ⁇ Mo154 ⁇ wheel. Right: ⁇ Mo132 ⁇ keplerate. See also MOIier et al. Acc. Chem. Res. 1999, 33, 2-10 and MGIier et ai. Angew. Chem. Int. Ed. 1995, 34, 2122-2124.
- Figure 8 (a) shows the variation in J1 values for 18 products obtained in the synthesis of a ⁇ Mo154 ⁇ wheel using a flow chemistry system of the invention with a UV-Vis detection system (a).
- An example of a complete UV-Vis spectrum of the ⁇ Mol 54 ⁇ wheel (1 ) prepared under optimized conditions is also shown in Figure 8 (b).
- Figure 9 shows the DLS results for two solutions obtained during the preparation of ⁇ Mo154 ⁇ and ⁇ Mo 132 ⁇ . The results show the presence of nanoparticles with a hydrodynamic diameter of 3.6 nm (corresponding to ⁇ Mo 154 ⁇ ) and 2.8 nm (corresponding to the ⁇ Mo132 ⁇ ).
- Figure 10 shows the concentration profiles across 90 different reaction mixtures for four chemical inputs used in the preparation of the ⁇ Mo154 ⁇ wheel.
- Figure 1 1 shows the combined fitness landscape obtained for the synthesis of ⁇ Mo 54 ⁇ and ⁇ Mo132 ⁇ as a function of the pH and the ratio of reducing agent (hydrazine) to Mo source. The results indicate the space regions where the J functions were maximized.
- Figure 12 shows two Raman spectra for the ⁇ Mo154 ⁇ wheel.
- the upper spectral line corresponds to the experimental compound synthesised in this work.
- the lower spectral line corresponds to a crystalline sample of ⁇ Mo154 ⁇ which was used as a reference.
- Figure 13 shows the change in pH for the reactions across a 5 ⁇ 10 discovery array experiment for the preparation of ⁇ Mo102 ⁇ / ⁇ Mo368 ⁇ .
- the reaction number corresponds to fractions being collected sequentially as 5 rows of 10 in the 50 reaction array (i.e. 1 -10 is aA-aJ, 1 1 -20 is bA-bJ, 21 -30 is cA-cJ, 31 -40 is dA-dJ, 41 -50 is eA-eJ).
- Figure 14 is a combination of DLS plots for four reaction products in the ⁇ Mo36 ⁇ discovery array (reaction numbers 6 (aF), 7 (aG), 16 (bF) and 17 (bG)).
- the measured particle diameters of 1 .7-2 nm are a close match to the crysta!lographical!y determined cluster dimensions of ⁇ Mo36 ⁇ .
- Figure 15 gives the mass yields for ⁇ Mo36 ⁇ for multiple repeated batches generated using conditions from reaction numbers 36 (left columns) and 46 (right columns).
- the average yield for the 10 reactions produced using conditions from reaction number 36 (dF) 924 ⁇ 62 mg (0.137 mmol, 78.7%).
- the average yield for the 10 reactions produced using conditions from reaction number 46 (eF) 1254 ⁇ 43 mg (0.185 mmol, 85.3%) .
- Figure 1 6 gives the mass yields for ⁇ Mo154 ⁇ for multiple repeated batches generated using conditions from reaction numbers 25 (left columns), 35 (middle columns) and 45 (right columns).
- Figure 1 8 is a flow diagram setting out the sequence of steps for a method according to an embodiment of the invention, inset to the flow diagram is a graph showing the increase in the fitness function J at higher cycles of the chemistry loop (bottom loop with run chemistry step).
- the flow diagram shows the computational and physical flow of the system from the starting point where the fitness objectives are set, a random starting point for the processing followed by the chemistry, analytical measurements and analysis, J evaluation, collection, iteration in a loop until the fitness objectives are achieved.
- Figure 1 9 is a schematic of the experimental set-up for the evolutionary synthesis of the self-assembled nanoclusters, the Molybdenum wheel ⁇ Moi 54 ⁇ and the Kepierate ball ⁇ Moi 32 ⁇ of Figure 7.
- Figure 20 shows the structures of a sample of the vast library of metal oxide ROMs including the Molybdenum wheel ⁇ 54 ⁇ and the Kepierate ball ⁇ , 32 ⁇ of Figure 7, which are prepared from the experimental set-up of Figure 1 9.
- the clusters are ail made of Mo-oxide with different building block types shown by the variously coloured polyhedra.
- the inventor has developed a process for preparing compounds, materials, and
- compositions that have a desired collection of chemical and/or physical properties.
- This desired collection of properties may be regarded as a specification which is set by a user prior to the initiation of a discovery process.
- the process of the invention involves a series of trial product preparations from which an automated analytical and control system may gather information for the preparation of further, ideally improved products.
- the preparation of trial products having properties that fulfil some portion of the specification may be used to inform the preparation of later compounds.
- the exploration of the product structural and compositional space is guided by automated evolutionary processing which is physically implemented and, in some respects, ultimately guided by the chemistry of the system as the algorithm.
- the processes described herein use chemical genetic algorithms that are directly informed, or guided, by the products produced. Such guidance is based on the reality of the products actually produced and is not completely embodied in the computer software package employed.
- the process of the invention allows a user to provide a chemically-encoded fitness function to an autonomous chemical evolutionary system, such as an inorganics system, which utilises a physical phase space
- the process of the invention may be referred to as evolutionary for the way that a product is developed through changes to the preparation methods, which includes changes to the chemical and physical inputs, and the resultant changes to the products produced.
- evolution also indicates that the synthesis is driven to produce a product having altered or improved properties.
- evolution may also be used to refer to the development of the preparation techniques themselves, which may provide a particular product in a more efficient way.
- the evolution of a process may also refer to adaptations that lead to new materials.
- the process of the present invention permits a user to access these new materials without the need for direct user control or intervention. Instead, the process is controlled by a control system which independently explores the product space for a product that meets the user specification.
- the process of the invention is intended to be driven by the specification desired by the user.
- the process may be blind to the structural groups and components that are present in the products and formulations.
- the process may be run without any user
- the present invention provides the user with the opportunity to explore a broad product space.
- flow chemistry techniques as described herein, allows a user to quickly change one, two, three or more flow inputs simultaneously, sequentially and randomly, thereby providing the possibility of making small and large changes to the product produced.
- the effect of making such changes is to allow the system to jump to areas of the product map that are separate from the area previously explored. New areas of the map are therefore opened up for exploration, and the chances of identifying other maxima on the map are increased.
- Suitably controlled flow methods allow the products produced to be analysed and distributed and separated into collection vessels (e.g. for later use or further analysis). Thus, product collection is not hindered, and large collections of products may be prepared.
- a flow chemistry system allows a user to provide multiple inputs to a reaction space, thereby allowing a large number of different reaction procedures to be explored.
- the information gathered in the analysis is also used as feedback, for example via a genetic selection algorithm, to influence the changes made to the chemical or physical inputs into the system.
- a screening method must identify conditions suitable for product formation and, for inorganic compounds in particular, it must also identify conditions suitable for product crystallization as well.
- Large reaction arrays are therefore an inevitable and required aspect of the discovery process.
- the preparation and analysis of such arrays is an extremely laborious and time consuming task when working solely under batch conditions, especially when exploring delicate multiparameter self-assembly reactions aiming to produce complex nanomolecuiar architectures.
- the provision of a flow chemistry system in combination with analytical and control systems, as described herein, is believed to address the issues that have previously hindered discovery processes.
- ROMs are a class of materials based on mixed metal oxides with applications in catalysis, electrochemistry, biomedicine and materials science (see, for example, Toma et al. Nat. Chem. 2010, 2, 826-831 ; Boldini et al. Advanced Synthesis & Catalysis 2010, 352, 2365- 2370; Hasenknopf Front. Biosci. 2005, 10, 275-287; Rodriguez-Aibeio et al, J. Am. Chem. Soc. 2009, 131, 16078-16087).
- the development of novel self-assembled systems is an arduous and labour intensive process, which requires a very delicate refinement of the reaction parameters. This represents an important limitation for practical implementation and scale-up of these materials to a preparative or industrial scale.
- the implementation of flow enabling techniques, as described herein, is an important development in addressing these limitations.
- the microfluidic device is not used to generate the individual combinations of chemical inputs. Rather, Kreutz et al. construct a population of combinations and each individual combination is delivered into the microfluidic device where its catalytic activity is tested. Thus, the microfluidic device has nothing to do with the generation of the population itself. Kreutz et ai. explore the product catalyst space in a series of stages, where each stage is presented as a distinct generation of a product population. Thus an initial batch of catalysts is prepared and tested, and further batches of material are prepared in subsequent and separate steps. The discovery process is therefore a batch synthesis operation that requires user intervention at each preparation step.
- the possibility of using evolutionary algorithms to direct chemical systems, leading to different products depending on the requirements of the fitness function, is believed to be a new approach to discovery chemistry.
- the present inventor has also identified as advantageous the use of the direct product output as a direct determinant of the subsequent chemical and physical inputs for a particular preparation. In this way, the process is engineered around, and directly responsive to, the actual products produced. The evolutionary calculations are therefore based on the physical parameter space of the system.
- Described herein is a process for preparing self-assembled nanociusters with minimum human input.
- the use of computer-controlled evolutionary algorithms is an enabling technology for the development of self-assembled nanostructures in an evolutionary fashion.
- the set-up comprises a fully automated system under the control of a simplex or genetic algorithm.
- the system developed by the inventor is capable of synthesizing two different and complex ROMs with minimum user interaction, in-situ analytical techniques are used to monitor the reaction and provide feedback to the control system providing the decision making inputs for the process.
- the chemical fitness landscape corresponding to the reaction conditions necessary to self-assemble each compound has been determined. This is believed to be the first example of a synthesis of a self-assembled nanomaterial directed by an evolutionary algorithm.
- the process of the invention includes the step of providing a series of chemical inputs to a reaction space of a flow chemistry system.
- the series of chemical input flows is a selection from a broader series of available chemical inputs.
- the process includes the step of supplying one or more physical inputs which may be selected from a broader range of available physical inputs.
- the physical inputs are deliverable to the reaction space, or they may be applied to one or more of the chemical inputs prior to the delivery of that input to the reaction space.
- the chemical and physical inputs may be regarded as the genetic encoding of a product phenotype.
- each available input may be referred to as a gene, and the combination of inputs may be referred to as a genotype. Different genotypes, which are different
- genes may lead to the same expressed product.
- genetic redundancies may be present.
- Flow chemistry techniques are particularly suitable for use in the evolutionary development of a product, importantly, the flow chemistry procedures may be used to prepare larger quantities of desirable product as soon as a product meeting the user specification is identified. Thus, where a product is identified from a particular combination of input flows, those inputs may be maintained in order to provide greater quantities of material.
- the ability of the flow techniques described here to provide larger quantities of materia! may be referred to as scale up.
- a flow chemistry system also permits the steps in the process to be run continuously and automatically, without the need for stoppages.
- batch discovery processes include pauses in the product preparation whilst analytical and decision steps are made.
- the production of future products is only resumed once the analysis and decision steps are complete.
- the present system avoids delaying the analytical and decision making steps by integrating the analytical system and the control system with the inputs and the outputs of the flow chemistry system.
- This scale up feature provides an advantage over other syntheses which rely on methods providing only a limited quantity of product. Once a product of interest is identified, the materials necessary for the synthesis must be manually identified and brought together, typically using traditional synthetic techniques. This batch approach to scale up from product identification to larger batch production is inherently inefficient due to the laboratory time that is required.
- Each of the chemical inputs represents a reagent, catalyst, solvent, or component for use in the preparation of product.
- a series of chemical inputs is intended to be a collection of reagents, catalysts, solvents, and/or components that could lead or will likely lead to the formation of a product having a desired characteristic or a desired series of characteristics.
- the physical inputs are intended to be used, in combination with the chemical inputs, to prepare a product having a desired characteristic or a desired series of characteristics.
- the physical and/or chemical properties of a product are analysed and compared against the user specification.
- Each product may be assigned a fitness value which is a measure of the product's ability to meet the requirements set out in the specification.
- the properties of that product may then be used to inform the synthesis of later products. Those products that are seen as having a greater fitness function may provide a greater influence on the preparation of later products compared to those products having a lesser fitness function.
- the preparation of a later product may differ from an earlier product in that the series of chemical and/or physical inputs flows into the reaction space is altered.
- Altered may mean that a chemical or physical input is removed from a previous series of inputs.
- Altered may mean that a chemical or physical input is replaced with an alternative chemical or physical input.
- Altered may also mean that an additional chemical or physical input is provided.
- Over the course of the product generation process a large number of different combinations of chemical and/or physical inputs may be used. The variety and number of different combinations will increase the chances of producing a product that meets or exceeds the user specification.
- the present invention also finds use in the identification of alternative products having comparable characteristics to a reference product.
- the present invention also finds use in the identification of alternative methods for the preparation of a particular product.
- the process of the invention allows a user to identify products having a series of desirable physical and/or chemical characteristics.
- the process of the invention also allows a user to identify improved processes for the preparation of target products.
- the specification set by the user is ultimately translated into a physical product that has a fitness function that meets or exceeds the characteristics that are deemed desirable by the user,
- a specification represents a collection of one, or typically two or more, characteristics that is desirable for a product to have. What constitutes a desirable characteristic will be dictated by the intended use of the product. The characteristics may be those chemical or physical characteristics that are known to produce a particular effect, or the characteristics that are thought or suspected by the user to produce a particular effect.
- a product produced in the process of fhe invention may be regarded as having met the requirement of the specification if it has all of fhe physical and/or chemical characteristics that are set out in the specification.
- the method may be useful for identifying products having characteristics that exceed the specification.
- the specification may also set certain limits or ranges for a particular characteristic.
- a characteristic may be a desirable physical characteristic of the product.
- the nature of the physical characteristic and the magnitude (or parameters) will be dictated by the intended use of the product. Examples of physical characteristics which may be explored by the methods of the present invention are set out below.
- a physical property of the product may be a characteristic selected from the group consisting of:
- Reduction/oxidation potential pH for example of an aqueous product mixture
- Size for example diameter of particles, or pore or cavity size
- Boiling point Solubility for example in a set solvent or series of solvents
- a particular physical property of the product may be a requirement for a product in the context of how that product is to be used.
- it may be necessary for a product to have a melting temperature above a certain value, or a particular rheological property (e.g. certain storage or loss module values).
- Such parameters may be associated with the physical integrity of the product in its intended use.
- a parameter may be a chemical characteristic of the product.
- the chemical characteristic may be a functional group that is suitable for use in a particular reaction.
- the presence of that functional group may be determined by spectroscopy, for example, or may be surmised by the use of the product itself, where the successful use indicates the presence of the functionality.
- the chemical characteristic may also be a biological characteristic, such as a biological activity.
- the chemical property of the product may be a characteristic selected from the group consisting of:
- the process of the invention may also be used to explore possible preparation procedures with the aim of identifying those procedures that yield a product under optimal conditions. Thus, a user may look to identify improved methods for making a particular product.
- the present invention allows new procedures to be identified by exploring the effects that particular chemical and physical inputs have on a reaction outcome.
- the specification represents a user's desired characteristics for a particular reaction.
- the characteristics of the reaction may relate to characteristics associated with the product produced. Examples of such characteristics include one or more characteristics selected from the group consisting of product yield, by-product yield, yield based on recovered starting material, product purity, product enantiomeric,
- the specification may also include characteristics that relate to the purity of the product, or the ease with which the product may be separated from other components of the reaction mixture.
- the discovery process may look to identify products that have desirable physical or chemical properties, and if may look to simultaneously identify the inputs that allow the product to be most easily purified. This is a unique advantage of the present process.
- the characteristics of a reaction may relate to the process conditions that are used or are necessary to yield product, for example a set yield of product. These conditions may be related to the chemical engineering aspects of the case, such as amount of starting material, catalyst or solvent required to produce a maximum or a set yield. The characteristic may also relate to the heat gain or loss during the preparation, or the rate or reaction.
- the specification may look to minimise or maximise each characteristic, as appropriate and as desired.
- the worked examples provided herein provide examples of user specifications. Also exemplified is the way in which a user may determine a fitness value based on the recorded characteristics for a particular product. Whilst the user may set various desired
- the individual characteristics may have different weightings in view of their contribution to a single aggregate fitness function.
- the use of such preference based methods in multi-objective optimization problems has been previously described (see Yu et ai. introduction to Evolutionary Algorithms 2010, Springer- Verlag, London).
- Such preference-based approaches are favoured where a particular analytical technique cannot readily distinguish between different products, in these situations it may be appropriate to include additional analytical techniques to permit a product to be distinguished.
- the present invention relates to the preparation of a desirable product.
- the desired product is a product that a user wishes to prepare that will have physical and/or chemical characteristics that meet with the user's needs.
- the processes of the invention are not limited to any particular type of desirable product.
- the product may refer to a particular chemical structure, or the product may be a collection of different structures, such as a polydisperse polymer.
- the product may be a particle or a quantum dot.
- the product may be a composition of matter, such as a pharmaceutical composition or a consumer homecare or personal product, such as a detergent mixture, a deodorant, or the like.
- the method of the invention allows the production of a plurality of products, where each product has a different chemical structure or a different composition.
- the characteristics of these products may vary, and some of the products produced will have similar or identical physical and chemical characteristics.
- the term product is used broadly to refer to any result from the combination of the inputs.
- the term product may therefore refer to a mixture containing a product formed from the chemical reaction of components provided by the chemical inputs.
- the term product may also refer to a product composition that is formed by the admixture of components provided by the chemical inputs.
- the product is an organic molecule.
- the organic molecule may be a biologically active agent.
- the organic molecule may be an organic compound having a molecular weight of 1 ,000 or less, 800 or less, or 500 or less. in one embodiment, the product is an inorganic molecule.
- the product is a compound comprising a plurality of metal atoms, in one embodiment, the compound comprises 3 or more, 4 or more, 5 or more, 6 or more, 12 or more, 24 or more, 36 or more, 102 or more, 1 32 or more, 154 or more metal atoms.
- the product may be a polyoxometallate, such as a polyoxomolybdate.
- the product may be a coordination cluster.
- the product may be a single molecule magnet.
- the product may be a particle, such as a metallic nanoparticie or an organic nanoparticle.
- the product may be a quantum dot.
- the product may be a nanostructured material, for example a metallic or polymeric material or a combination of both.
- the product may be a dye, which includes organic, inorganic and hybrid organic-inorganic dyes.
- the product may be a biologically active agent, which includes those agents having organic, inorganic and/or biological components.
- the product may be an electronic material. Such a material is one that is capable of acting as a conductor, magnet, photovoltaic material, or the like.
- the product may be a polymer, including but not limited to homopolymers and copolymers formed via polymerisation methodologies known to those skilled in the art.
- the product may be an organic molecule.
- the product may be a composition.
- the composition may be a pharmaceutical composition.
- the composition may be a personal healthcare product.
- the compositions may be a cosmetic formulation, a detergent formulation, a paint formulation, or a food stuff.
- a composition may comprise any one of the products referred to above.
- a product produced in the reaction space is not limited to the direct product of a reaction of one or more of the chemical inputs.
- the processes described herein encompass the preparation of intermediate materials, which are then reacted further in the reaction space, upon application of appropriate chemical and physical inputs to generate a product material.
- Such complexes may be formed from a common building block starting material, which is generated in a reaction space from a combination of chemical and physical inputs.
- the building block optionally together with other components, is capable of forming larger supramolecular structures.
- the exact form of these structures may be influenced by other chemical and physical inputs into the reaction space.
- a range of supramolecular forms may be accessed, and each form may be analysed and reviewed against the user specification.
- the system may be used to alter the nature of the building block itself, but may nevertheless be used to prepare supramolecular structures of similar size and shape, regardless of the nature of the building block itself.
- the references to a product are references to the desirable product meeting the
- the analytical system is capable of recording the characteristics of each mixture that results from the combination of chemical and physical inputs. Where a particular selection of inputs does not produce a desirable result, this will be detected.
- the control system will place a low fitness function against the combination that has resulted in poor product. Such a function, which is placed against the relevant chemical and physical inputs, will influence the selection of later combinations of inputs.
- the present invention relates to the use of flow techniques to prepare products of potential use.
- the product may be a solution or suspension, which may be produced directly in the preparation step.
- the product may be contained within the fluid that is used in the flow technique.
- the product may be dissolved or suspended in that fluid.
- the analytical techniques described for use in the invention include those that are suitable for analysis of product in solution or suspension.
- a product may be separated from a solvent or carrier fluid (dispersed phase) using techniques familiar to those of skill in the art. Simple filtration techniques may be used to separate a product material where it is insoluble in the fluid. Crystallisation and precipitation techniques may also be used to isolate the product material from the solvent.
- Part of the user specification may relate to the purity of the isolated product, the form of the product after it is isolated, and the effort required to reach a certain specified level of purity.
- the steps mentioned above may form part of the analysis of the product itself.
- the present invention also relates to the identification of a desirable preparation method.
- the desired method is a method that a user wishes to use that will have process
- the flow chemistry system for use in the invention may be based on standard laboratory flow systems, including microfiuidic systems. Such systems may be adapted as described herein.
- the flow system comprises a series of chemical inputs in fluid communication with a reaction space.
- the chemical input may be a reservoir holding a material for use in the preparation of a product.
- the reservoir may be connected via a fluid channel to the reaction space.
- Each chemical input is independently deliverable to the reaction space.
- the rate of delivery is controllable by the control system.
- the amount of material delivered is also controllable by the control system.
- the reservoir is a syringe, where the plunger is under the control of the control system.
- the fluid channel which may be tubing, connects the syringe to the reaction space.
- individual channels may lead directly to the reaction space. Two or more of the fluid channels may combine prior to the reaction space, for example to allow pre-mixing of components.
- Standard flow chemistry architectures may be used in the present invention.
- the fluid flows may pass through a standard microfluidics substrate that has been appropriately patterned with fluid channels and spaces.
- the flow system may use standard laboratory tubing that is appropriately linked, for example using valves, connectors and manifolds. The use of a tubing system may be preferred over the microfluidics system where larger scale product preparations are desired.
- the flow chemistry system is a reaction network that is prepared by a 3D printing method.
- Such architectures are particularly useful as the precise arrangement and size of flow channels, including reaction spaces, mixing spaces, and input and output channels may be set by the user, allowing precise control of component mixing.
- the combined flow rate in the flow chemistry system is at least 1 , at least 5, at least 10, at least 15 or at least 20 mL min. Using flow rates at these values allows the production of useful quantities of material, for example sufficient quantities for analysis and future use, in relatively quick time. The use of flow rates with these lower limits also allows a user to scale up a particular synthesis thereby to provide meaningful quantities of material directly from the system.
- the combined flow rate refers to the total flow rate of the combined chemical inputs into, in or out of the reaction space. The total flow rate may be calculated from the individual flow rates of the chemical inputs.
- the flow rate through the system may be kept constant with changes in chemical and/or physical inputs. Alternatively, changes in flow rate may be made, and each flow rate may represent a physical input into the reaction space.
- the reaction volume in the flow chemistry system is at least 1 mL, at least 5 mL, at least 10 mL, at least 15 mL, at least 20 mL.
- the reaction volume is a function of the combined flow rate over time.
- the reaction volume refers to the combined volume of the chemical inputs for a particular product preparation.
- the reaction volume is the volume used when the process is in discovery mode. Thus, the emphasis at this stage is to produce a large variety of different product mixtures, where there is sufficient product for analysis by the analytical system.
- Flow chemistry techniques may include the step of passing fluid through channels, for example to permit the mixing of components within. Such may be useful in ensuring that materials are well dispersed. Such may ensure quicker and complete reaction or distribution.
- the reaction space is not particularly limited and refers to the portion of the system where the product is formed.
- the reaction space may comprise one or more chambers and/or channels in fluid communication.
- the reaction space may comprise one or more fluid channels in fluid communication.
- the shape and size of the chambers is not particularly limited, and may be selected based on the scale at which the user wishes to operate.
- the reaction space is in fluid communication with the chemical inputs. It is not necessary that each of the chemical inputs be deliverable directly to the reaction space. Two or more of the chemical inputs may be combined prior to delivery to the reaction space. Such may be useful for premixing or pre-reacting certain chemical inputs prior to their delivery to the reaction space.
- the process of the invention operates continuously to provide first, second and further products.
- the use of, for example, in line analytical systems permits products to be assessed against the specification in real time, and the preparation of further products may be determined in real time also, without the need to pause the operation of the flow chemistry system.
- the discovery process of the invention is not a batch process.
- the flow chemistry system is adapted to permit the fiow of a fluid through the system in between each of the different combinations of chemical and physical inputs. Such a fluid is provided to separate the product mixtures in the flow system, thereby preventing cross contamination between product samples.
- the use of such spacing fluid in flow chemistry techniques is well known to those of skill in the art.
- reaction space may be used to refer to that portion of the flow chemistry system where a product is formed, in certain embodiment of the invention, the product is a molecule that is formed by a chemical reaction in the reaction space, in other embodiments, the product is a composition of components. Such a composition may not be formed by chemical reaction. Rather a composition may be formed by admixture of the various components which are delivered as chemical inputs.
- the reaction space has a fluid output which is in communication with an analytical system.
- the analytical system is therefore in line with the fiow chemistry system and may be integral to it.
- the reaction space may be in fluid communication, optionally via the analytical system, with a product collection system.
- the product collection system may include spatially arranged receptacles for receiving individual outputs from the reaction space, in practice, the system may include a series of test tubes or vials, or a well plate, such as a 96 well plate.
- the product mixture may be dispensed into the receptacles automatically or manually. In either case, the distribution of product mixture may be based on the analysis of the mixture, for example using the analytical system. Additionally or alternatively, the distribution of product mixtures may be based on the expected fiow rates of material through the system.
- product exiting the reaction space may be analysed then collected, either for later further analysis or for use.
- the product may be collected, and the analysis may be performed on the collected products.
- the product is collected, it is preferable to individually collect the products that results from each series of chemical and/or physical inputs.
- the products may be individually distributed into well plates, vials, test tubes and the like, as well known to the skilled person, in a flow system the separation of products may be undertaken using an appropriate computer control system that monitors flow rates through the flow system, individual outputs may be collected based on the expected flow of material through the system.
- the collection of outputs may also be coordinated with the analysis of the product material exiting the reaction space. Changes in the product output may be detected and the products may be distributed accordingly.
- the reference to a chemical input is a broad reference to any material, which may be a reagent, catalyst, solvent, or a component, that may allow the preparation of a product.
- the chemical input is provided as or in a fluid for transfer to the reaction space. Where the material is a fluid, it may be supplied in this form to the reaction space.
- the material may be diluted, dissolved or suspended in a fluid for delivery to the reaction space.
- the material may be in solution or suspension.
- the fluid that dissolves or suspends the material is not particularly limited, and may be water or an organic solvent, for example.
- the fluid may be independently deliverable to the reaction space.
- the fluid is also used to provide separation between individual combinations of chemical inputs that are supplied to the reaction space thereby preventing contamination between different combinations.
- the identity of the chemical inputs will be dependent upon the reaction and formulation steps that are to be employed, and will also be dependent upon the user's intended exploration space. Whilst the present invention allows a user to explore a product map, the user must provide the boundaries to that map by way of choosing a set of reagents, catalysts, solvents, and components, and by selecting possible reaction and formulation pathways. Within those confines, the present invention nevertheless allows the user the possibility of exploring a broad range of product space.
- the examples in the present case demonstrate the breadth of structural complexity that is available in an inorganic synthesis employing a small range of chemical inputs. in some embodiments, one or more, such as two or three, chemical inputs may be regarded as essential. Thus, these inputs are always provided into the reaction space.
- the alteration of other chemical and/or physical inputs provides the variety in the combination that permits an exploration of the product space.
- the number of essential inputs is less than the total number of available inputs, and is preferably considerably 5 less than the total number of available inputs.
- An input may be essential if it is necessary for providing a necessary component of the product, such as a structural component, or a necessary activity of the product.
- a necessary component of the product such as a structural component, or a necessary activity of the product.
- the process of the invention relates to the identification of an improved method of synthesising a particular product, it may be that case that a number of the inputs are essential in order to provide the particular product.
- Other inputs are available and are variable in order to investigate other conditions for preparing the particular product.
- a chemical input may be a reagent.
- a range of reagents may be provided that differ in their structure and functionality.
- a chemical input may be a catalyst.
- a range of catalysts may be provided that differ in their activity, selectivity, or morphology.
- a chemical input may be an acid or a base.
- a range of different acids and bases may be provided, where the acidity differs.
- Organic and inorganic acids and bases may be selected. Weak and strong acids and bases may be provided,
- a chemical input may be a solvent.
- Organic solvents and water may be used.
- a range of non-polar, protic and aprotic solvents may be provided, in one embodiment, water is provided as a chemical input.
- a chemical input may be a salt.
- a range of different salt forms of a particular component may be used.
- a range of organic and inorganic salts may be provided
- a chemical input may be an active pharmaceutical agent.
- Other chemical inputs may be pharmaceutical excipients.
- a chemical input may be a cosmetic agent for a cosmetic product.
- Other chemical inputs may be carriers and the like for cosmetic products.
- a chemical input may also be a gas.
- a chemical input may be an inert gas, such as nitrogen or argon, to supply to the reaction space.
- the chemical input is a reaction gas, such as hydrogen, oxygen or carbon dioxide.
- a chemical input may be an input that is for useful in the work up of a reaction product, or is useful for quenching a reaction. Such inputs may be provided to the reaction space at some time period after the other inputs have been combined, thereby to quench a reaction or to permit the work up and possible isolation of product material.
- the concentration of a material within a solution or in a suspension will be selected appropriately by the user.
- the effective concentration of the material in the reaction space will depend on the concentration of that material within its individual chemical flow and the volume of other chemical inputs with which it is combined in the reaction space. These volumes are dictated by the flow rates of each of the inputs, which may be varied as appropriate, to alter the effective concentration of a material in the reaction space. Such techniques will be familiar to those with an understanding of flow chemistry techniques.
- the material that is present as a chemical input is stable.
- the flow chemistry techniques may require that a chemical input is stored for a time before it is used.
- a chemical output may be stored under an inert atmosphere, may be stored under anhydrous conditions or may be stored at reduced temperature, as required.
- the flow chemistry system may comprise a number of controllable syringes equal to the number of specified chemical inputs. From time to time it may be necessary to replenish a chemical input, for example to refill a syringe with a particular component. The process of the invention need not be halted to allow such replenishment, and the chemical input may be replenished at such a time as it is not required as an input into the reaction space.
- the control system may be suitably programmed to predict the time at which a chemical input will become depleted. A user may be warned accordingly.
- the control system may also be suitably programmed to factor in to the decision making and control process the unavailability of an input owing to
- the control system can continue to produce products using inputs other than the input that is being replenished.
- the number of chemical inputs may be one, though in this embodiment the number of physical inputs, which may bring about a change in the chemical input, will be large, in one embodiment, there is provided two or more, three or more, four or more, five or more, six or more, ten or more, twenty or more chemical inputs.
- the method also includes the provision of one or more physical inputs which are made available for delivery to the reaction space or for delivery to a chemical input prior to that chemical input entering the reaction space.
- a physical input is intended to refer to an input that is not a material such as a reagent, catalyst, solvent, or a component.
- a physical input may refer to, for example, an input that modulates temperature, such as the temperature of a particular chemical input, or the temperature of the fluids in the reaction space.
- a modulation in temperature may refer to a physical input than can raise and/or lower temperature.
- a series of temperature inputs may be provided that is a gradient of temperature increase and/or decreases. The range of temperature inputs may be limited by the boiling and freezing points of the fluid chemical inputs supplied to the reaction space, and the fluid product output. It is noted, however, that the reaction space may be suitably pressurised thereby to effectively alter the boiling and freezing points of the fluid chemical inputs, in this way a greater range of temperature inputs may be supplied to the system.
- Temperature inputs may be used to initiate reagents or favour certain reaction pathways. Temperature inputs may also be used to investigate the stabilities of the chemical input and product output.
- the physical input may be light. A series of light inputs may be provided that differ in one or more of intensity, wavelength, exposure time and spectrum. Light inputs may be used to initiate reagents or may be used to favour or alter certain reaction pathways. Light inputs may include UV-vis inputs.
- the physical input may be microwave radiation.
- the physical input may be ultrasound. Such may be useful for the generation of reagents or products. Ultrasound may also aid the dissolution of material.
- the physical input may be pressure. Pressure changes may be used to alter, for example, solvent boiling points.
- the physical input to the system may be a process related input for the reaction mixture.
- the input may be a time limited feature for reaction or admixture. After a set time, the reaction mixture may be analysed and the product quantified. Thus, reaction time may be an input.
- other process features such as concentration and ratio of chemicai inputs, such as the reagent and catalyst chemicai inputs, may be a physical input.
- the reaction mixture refers to the combination of chemical inputs that are brought together in the reaction space.
- the interaction of the components in the reaction mixture provides the product. This interaction may be a chemicai reaction and/or an admixture of components.
- reaction mixture which may be chemical or physical changes, in order to provide alternative products, which products may then be compared to the user specification.
- composition of the reaction mixture may be changed by alterations in the chemicai inputs.
- certain reagents, catalysts and solvents may be replaced, removed, or added to the reaction space through the replacement, removal or addition of chemical inputs.
- the effective concentration of components in the reaction space can be altered by changes in the flow rate of a particular chemical input. Changes in concentration may also be made by the use of a solvent input, increased flow of this input (in relation to other inputs) has the effect of reducing the effective concentration of those inputs in the reaction space.
- the reaction mixture may be subjected to physical inputs, as described above, which may bring about an alteration in the identity of the product produced, or may bring about a change in the process leading to a particular product.
- the reaction mixture produces a product, which may be present together with unreacted starting materials (reagents), catalysts, by-products, solvent and so on.
- the nature of the product mixture may be a part of the user's investigation, as the user may look to investigate not only desirable products, but the composition which the product is provided in.
- the nature of the product mixture may be important for processing reasons.
- the product may need to be separated from the other components in the product mixture in order for that product to be used.
- the ease of this process may be dictated by the product itself, but aiso the nature of the other components, such as the starting materials, catalyst, by-products, and solvent mentioned above. It may therefore be important to investigate the effects that the chemical and physical inputs have on the separation process, with a view to identifying those inputs that produce a desirable product, and aiso that the product can be efficiently purified.
- reaction mixture may be designed to yield one or more intermediate products, which are intended to react further to produce product material.
- intermediate products may be building blocks, such as monomers or metal complexes, which are capable of interacting with one another to form larger, more complex structures, such as polymers and supramolecular complexes.
- the building blocks generated during these processes have a profound impact on the final products formed.
- the exploration of different amounts and different types of intermediate products may also be factors for exploration and investigation.
- a particular set of chemical and physical inputs may be used to control the formation of a particular type of intermediate. Further sets of chemical and/or physical inputs may be supplied to the reaction space in order to influence the way in which the intermediate product goes on to react, for example the formation of product material through the interaction of the intermediates with one another and/or the interaction with other species.
- the inventor has shown the use of a flow system to generate an intermediate metal source as a building block, which building block may then be used to assemble larger polyoxometal!ate structures, such as wheels and spherical clusters. it will be apparent to the skilled person that the interaction between building blocks may be influenced by additional chemical inputs that are provided. It will aiso be clear that physical inputs, such as temperature, pressure, light, pH, concentration and the like may also be important factors in determining the precise nature of the final product.
- the product mixture may aiso be important if the product is to be used directly in the form in which it is produced.
- the other components in the product mixture may influence the effect that the product has, and it may be important to investigate the effects that the chemical and physical inputs have on the use of the product, with a view to identifying those inputs that allow the product to be used effectively.
- the process looks to identify compositions for future use, such as pharmaceutical compositions, these considerations will be important aspects in the user specification.
- the inventor has recognised that the process of the invention may be used to identify desirable compounds and may be used to identify those reaction conditions, which are the sum of the chemical and physical inputs that allow the desirable product to be purified with most efficiency.
- the present inventor has shown that a range of inorganic compounds may be produced using a discovery process, and that same discovery process may be used to investigate the product mixtures that are most favourable for allowing the inorganic product to be crystallised from the product mixture.
- the analytical system is adapted for interaction with the flow chemistry system.
- the analytical system is provided for the purpose of analysing product produced in the reaction space.
- the analytical system is in communication with the control system.
- the analytical data is provided to the control system for comparison against the user
- the analytical system is automated.
- the system is adapted such that it is capable of receiving a product mixture, optionally performing any purification, work up or sample preparation steps, analysing the product mixture or any product extracted from it, and supplying the analytical data to the control system.
- the analytical system may also be used to monitor the chemical inputs into the reaction space, and the progress of the product formation within the reaction space.
- the analytical system may also be used to monitor the output of the reaction space.
- the collection of individual products exiting from the reaction space may be based on the results of such analysis.
- the analytical system may be integrated with the flow chemistry system.
- a fluid flow into or exiting from the reaction space may be directly analysed.
- certain product characteristics may not be determined by measurement of a product in a fluid flow.
- spectroscopic analyses may be performed directly on the fluid as it exits the reaction space. Such analyses include those based on IR, UV-vis, Raman and NMR spectroscopies, retention time (e.g. through an on line column), DLS and the like.
- the user specification may be drawn up with a knowledge of which analytical techniques may be usefully employed together with a flow chemistry system.
- the analytical technique is passive or non-destructive.
- the sample may be tested without requiring any physical or chemical degradation of the product.
- the analytical techniques may include those techniques that require some form of loss or irreversible depredation of the product produced. Such techniques may require some or ail of the product. Examples of techniques that require destruction of material, or may lead to the destruction of material include mass spectrometry, thermal studies (such as melting point analyses), bioactivity assays.
- Fluid exiting from the reaction space may be directed to analytical devices such as mass spectrometers and NMR spectrometers.
- the fluid may be taken directly from the flow exiting the reaction space. Alternatively, samples may be taken from individually collected products.
- the analytical system will test a particular reaction mixture after it exits the product space.
- the results from the analytical analysis may be supplied to the control system which will respond to the output by altering the inputs into the reaction space. Where the analysis is rapid, the control system will be able to respond rapidly and will be capable of formulating the next series of inputs in direct response to the output. However, in some embodiments, the analysis may require some time before results can be provided to the control system.
- control system may be required to formulate the next series of inputs without knowledge of the results of a previous output. This is not a problem.
- the control system is capable of formulating a series of inputs from earlier results, and may also generate other series of inputs either randomly or as considered variations of other series of inputs provided to the reaction space. Thus a time lag between product production and product analysis is not a problem and the control system is programmed accordingly to deal with this.
- the process does not look to produce a product then halt future product production whilst the results from the analysis are awaited. In essence this would be akin to a batch process, where there are separate production, analysis and decision making steps.
- the present invention looks to bring these steps together, and the system is permitted to run continuously and automatically until an end result is achieved.
- the analytical system has a UV-vis detector, in one embodiment, the analytical system has a pH detector. These detectors may be provided in line with the reaction space.
- the control system links the analytical system with the flow chemistry system.
- the control system controls the chemical and physical inputs into the reaction space.
- the control system receives the analytical data from the analytical system and assesses whether a product meets the user specification.
- the control system is provided with an evolutionary algorithm to change the chemical and physical inputs into the reaction space in response to the assessment of a product or series of products against the specification. As explained below, the control system may also make random changes to the inputs and such changes need not be responsive to the assessment of a product.
- the control system is suitably programmed to control the steps of the process automatically.
- the control system is provided with appropriate decision making elements that are capable of taking the analysis data from the analytical system and comparing that data to the user specification.
- the control system is capable of assigning fitness functions to a series of chemical and physical inputs that resulted in a product whose analysis data was recorded.
- the control system is programmed to formulate a future series of inputs into the reaction space based on the fitness functions that have been applied to an earlier series of inputs. Using evolutionary analysis, the control system will look to discard (i.e. not use in future series) those inputs or combinations of inputs that are associated with products having poor fitness functions. The control system will look to perpetuate (i.e.
- control system is suitably programmed to recognise the contribution made by a single input into the reaction mixture, and the contribution made by a combination of inputs into the reaction mixture.
- control system may look to identify combinations of inputs, such as two or three inputs, or more, that provide a synergistic effect. Such combinations may be perpetuated in later product preparations.
- the present invention may therefore make use of those decision making programmes that are described in the art.
- the skilled person may adapt these programmes, or prepare bespoke programmes for use, based on the evolutionary methods that are to be employed.
- Such custom made control elements may take into account the user speciation, the chemistry employed, the chemical and physical characteristics of the product and their contribution to the overall fitness function.
- the principles of evolving a product production process are therefore understood by the skilled person.
- the chemical and/or physical inputs may be altered to provide a different combination.
- an input may evolve by the alteration, such as the change, addition or removal, of a single input at a time. This may be referred to as a mutation of an input. Such changes may be useful where incremental improvements in product characteristics are noted.
- the mutation may be a random mutation, which may be made to apply a pressure to the system with a view to finding out whether such a change is capable of providing a desirable product.
- Inputs may also evolve by the alteration of two or more inputs at a time. These alterations may be designed, or may be random. in one embodiment, an input may evolve by the alteration of multiple inputs at a time.
- crossover This may be referred to as a crossover.
- a crossover combines inputs from particular combinations that have been found to provide products having promising characteristics (i.e. having good fitness functions). The crossover therefore combines those parts of two or more combinations that are believed to be associated with a beneficial result, with the aim of production of a superior product.
- the combination of inputs may be referred to as the genotype, and the products that result may be referred to as the phenotype.
- the phenotype is the combination of physical and/or chemical characteristics of the product. Different genotypes may produce the same phenotype.
- the control system is therefore able to procreate information gained from early product preparations forward in time to inform the preparation of later product preparations.
- the application of these decision making algorithms to a flow system is believed to be a point of distinction for the present case.
- Nelder-Mead simplex search algorithm An example of an evolutionary algorithm for use in the present case is the Nelder-Mead simplex search algorithm.
- Nelder-Mead is a direction-based search method (Nelder J et ai. Comput. J. 1965, 7, 308-313) and has proven to be a popular optimization algorithm owing to its ability to explore large regions of the fitness landscape in relatively small time frames (Yu et al. introduction to Evolutionary Algorithms 2010, Springer- Verlag London Limited). Nevertheless, the Nelder-Mead algorithm is capable of directing searches into local optima 'traps' when working with complex problems and multiple fitness landscapes (Moore et ai. Chemical Science 2011 , 2, 417-424).
- the control system will be suitably programmed to recognise whether a particular discovery process is suitable for preparing a product meeting the user specification.
- the control system may halt the process if it has prepared ail possible combinations of chemical and physical inputs.
- the control system may halt the process if a set number of products has been prepared and none of these products meets the specification or comes close to doing so.
- the control system may also halt the discovery process if no useful or potentially useful products have been identified after a representative sample of the total product space has been explored.
- the representative sample is a collection of products that are well dispersed throughout the possible product space.
- control system may be suitably programmed to finish once a product meeting the specification has been identified. Alternatively once such a product is identified, the control system may instruct the system to produce further quantities of the product for further evaluation or for use. Although a useful product may be identified the system may be programmed to continue with the discovery process in an attempt to identify further products meeting the specification and specifically to find products having superior characteristics over the originally identified useful product.
- the requirements for the control system to halt the process may be dictated to the control system by the user prior to the initiation of the process.
- the control system may be provided with a suitable filter system for discarding those combinations of inputs that are associated with products having poor fitness functions.
- the filter system may apply a simple numerical filter in order to discount certain combinations.
- the filter may be applied to those combinations that give rise to a product having a characteristic that does not meet a threshold value (which value may be independent of the value of that characteristic that is specified in the user specification).
- a threshold value which value may be independent of the value of that characteristic that is specified in the user specification.
- the process of the invention will typically include the preparation of many reaction mixtures and consequently many products, which may be the same or different.
- This training set may provide an initial indication as to what inputs may be usefully procreated in later syntheses.
- the training set which is a plurality of combinations, may be based on products prepared using a series of randomly generated combinations. The combinations may be selected as a
- control system and the analytical system may be integrated.
- decision making elements of the control system and the analytical processing elements of the analytical system may be provided on a single computer, and the software that is provided to the computer may integrate the analytical processing elements with the decision making elements. Processing
- the starting point for the process is the provision of a specification by the user.
- the requirements of that specification expressed in terms of the physical and chemical characteristics that it is desirable for a product to possess, are provided to the control system.
- the control system is connected to an analytical system which is suitable for measuring the physical and chemical characteristics that are set out in the specification.
- the first preparation step in the process is the selection of a first combination of chemical and/or physical inputs and supplying these inputs to the reaction space, thereby to generate a first product.
- the first combination of inputs may be a known combination of inputs for providing a particular product. Subsequent changes in the inputs may then look to find alternative products having superior characteristics. Alternatively, the process may be designed to find alternative products that have comparable characteristics to the first product.
- the inputs may also be randomly selected.
- the random selection may be made by the user as an initiation step to the process.
- the control system may randomly select the chemical and/or physical inputs.
- the steps of the process relate to the generation of a first combination of inputs, then a second combination of inputs, optionally followed by the generation of further combinations of inputs, in practice, it is likely that a discovery process will use many different
- the chemical inputs are supplied to the reaction space to form a reaction mixture, A product is permitted to form from the reaction mixture.
- reagents optionally in the presence of a catalyst, may react to form a product structure.
- Reaction may refer to the generation of breaking one or more chemical bonds.
- a chemical bond is a covarria bond.
- other bond types may be referred to, such as hydrogen bonding, metal-metal and metal-ligand bonding.
- the product is a composition, and is formed by the admixture of the chemical inputs.
- the flow chemistry system is adapted to provide the flow conditions suitable for the formation of products.
- the flow channel dimensions, such as length, and flow rates are provided to allow suitable residency time to allow product formation.
- the flow architecture may also be suitable to permit appropriate mixing for the chemical inputs.
- the flow architecture may also be adapted to allow the application of physical inputs, such as heat and light, to the reaction mixture.
- the output from the reaction space may be collected.
- the products from each combination of chemical and/or physical inputs are individually collected, and optionally purified. These products may then be analysed. Additionally or alternatively, the products exiting from the reaction space may be analysed directly, prior to collection.
- the output from the reaction space may be analysed directly by in-line analytical devices that are integrated with the flow chemistry system.
- the system may then repeat these steps for different combinations of physical and chemical inputs.
- a combination may be referred to as an individual where it differs from other combinations in at least one chemical or physical input.
- each combination may be different.
- the process may also repeat a particular combination of inputs. Such may be useful as a corroboration of an earlier result.
- the process of the invention may be concluded when a product is identified as meeting or exceeding the specification.
- the process of the invention may be concluded when the control system has explored ail combinations of chemical and physical inputs.
- the process of the invention may be concluded if the control system recognises that the fitness functions of later products do not exceed the fitness functions of earlier prepared products.
- the system may recognise that the product characteristics have plateaued and it is unlikely that further, improved products may be prepared from the available chemical and physical inputs.
- the process may be concluded after a set period of time, regardless of the fitness functions awarded to the products produced.
- the process of the invention may be used to prepare a wide variety of polyoxometallate, including po!yoxomolybdaie, compounds.
- the process of the invention may also be used to prepare metal clusters, such as Mn clusters, as described herein.
- the systems described show the use of in-line UV-vis detection to provide an immediate analysis of the product mixtures produced, which may then be used to provide feedback to the synthesis of later products through appropriate changes to the chemical and physical inputs.
- the exemplified processes also demonstrate the effectiveness of using a flow chemistry system to explore the formation of new products within a reaction mixture, and also to explore the effects that the reaction mixture has on the purification of that product.
- the inventor is also able to explore the conditions under which a product may be favourably crystallised from the reaction mixture, thereby providing desirable product in isolated, or purified, form.
- the present invention provides a control system for taking the data from the analytical system and comparing it against the user specification.
- the control system is provided with a suitable evolutionary, or genetic, algorithm for selecting initial combinations of chemical and physical inputs, and for selecting subsequent chemical and physical inputs based on the fitness functions of the initial products against the user specification.
- the algorithm may be a Neider-Mead simplex algorithm.
- the control system is therefore a suitably programmed computer.
- the present invention provides a control system suitably programmed to control the process of the invention. Also provided is a computer implemented method for conducting the process of the invention.
- the computer implemented method may be provided on a suitable memory device, such as a hard disk or flash memory.
- the computer-implemented method may be made available via the internet.
- Ail chemicals were of analytical reagent grade purchased from Sigma Aidrich, Fisher Scientific and Alfa Aesar chemical companies and used as supplied, without further purification.
- the standard stock solutions of each reagent were prepared using standard practices and volumetric glassware. All solutions were prepared with deionised water and stored in plastic labware after preparation, except the reducing agent stocks which were freshly prepared ( ⁇ 1 hr) prior to each experiment run.
- the reagents sodium mo!ybdate, hydrazine and sodium dithionate were purchased from Sigma-Aldrich and used as received.
- Pump System The pump system set-up utilized in the POM and coordination preparations included between 3 and 8 programmable syringe pumps (C3000 model, Tricontinent Ltd, CA, USA) fitted with a 5 mL syringe and a 3-way solenoid valve; a LabVIEWTM-based PC interface was used for controlling the pumps.
- FEP plastic tubing of 1 /8 inch (approx. 3 mm) outer diameter was cut to the specified lengths and connected using standard HPLC low pressure PTFE connectors and a PEEK manifold (Thames Restek, UK).
- the different amounts of reagents were pumped into a 10 mL reaction vessel equipped with a magnetic stirrer (Thermo Scientific), a pH electrode (VWR international) and a UV-Vis reflection probe (TP-300). After a controlled reaction time, the UV-Vis spectrum was acquired employing an Avantes spectrometer
- Avaspec-2048 equipped with a DH-2000 halogen light source connected by fiber optics to a TP300 fiber probe.
- the pH was measured using a SevenMulti Mettler-Toiedo S80. All the equipment and data were controlled and recorded using LabviewTM. Afterwards, the reaction mixture was extracted from the reactor and collected for further analysis using an additional pump. The reactor was washed with 6 mL of distilled water 3 times.
- the method is capable of both the rapid construction of large number reaction arrays for molecular discovery and the continuous generation of batch reactions required during scale-up.
- the setup utilized eight programmable syringe pumps (C3000 model, Tricontinent Ltd, CA, USA), although this is readily extendable to fifteen, and a LabVIEWTM-based PC interface for controlling the pumps ( Figure 1 .).
- the pumps are independently controllable are suitable for delivering chemical inputs to a reaction space.
- the reagent set chosen for POM synthesis consisted of distilled deionized water for dilution, 2,5 M Na2Mo04 ⁇ 2 H20 as the molybdenum source, three acid sources (5.0 M HCI, 1 .0 M H2S04, and 50% AcOH), 4.0 M AcO(NH4), and two sources of reducing agent, 0.25 M
- ⁇ Mo102 ⁇ , and 5 ⁇ Mo368 ⁇ up to five pumps were required to supply the additional reducing agent and buffer stocks.
- the reagent set represents the chemical inputs into the reaction space.
- the initial focus of the work was therefore to prepare a flow chemistry system that could repeat this screening process, and with minimal human input.
- the ⁇ Mo36 ⁇ structure was selected as a test compound for the "discovery array”.
- the pumps were programmed to run at a range of flow rates, incrementally increasing both the relative ratio of acid to molybdate, and the overall reagent concentrations (two key parameters of POM formation and crystallization) throughout an experimental scan of production conditions.
- concentrations represent physical inputs into the reaction space.
- the combined flow rate for ail pumps running at any specific point was set to 12.5 mL min "1 in order to maintain a consistent output flow velocity and reaction volume.
- the variation of the output flow composition was controlled by varying the flow rates of the individual chemical inputs relative to one another.
- a length of tubing (6.22 m) of relatively wide bore (1 ,6 mm internal diameter) was placed after a mixing manifold to allow dissolution before collection of transient precipitates that are typically observed upon acidification of molybdate salts.
- the diameter was chosen to be sufficiently wide to avoid blockage of the system upon formation of such precipitates and the tubing length was chosen to coincide with the reaction volumes collected.
- the relative flow rates were changed every 30 s thus giving a reaction volume of 6.25 mL (i.e. 1 ⁇ 2 min ⁇
- the next target structure for the discovery array setup was the reduced "molybdenum blue wheel", 2 ⁇ Mo 154 ⁇ , first characterized by MGIIer et, al, (see (a) Miiller et ai. Angew. Chem. int. Ed. 1995, 34, 2122-2124; (b) Muiler et ai. Angew. Chem. int. Ed. 1996, 35, 1206- 208).
- the reduced wheel is typically produced in batch via the partial reduction of an acidified molybdate solution with a reducing agent (such as sodium dithionite).
- a reducing agent such as sodium dithionite.
- the flow chemistry system used above was provided with an additional pump ⁇ additional chemical input) containing a solution of 0.25 M Na 2 S 2 0 4 .
- the pump was programmed to provide 1 0 mol % reducing agent with respect to the Mo source during the scan of the reaction parameters.
- the relative reagent ratios and levels of dilutions were also incrementally altered over the experimental run (as before, these are physical inputs to the reaction space).
- the dithionite pump flow rate was set to scale directly with the molybdate pump flow rate to give a constant reduction environment for ail fifty reactions.
- the reducing agent pump flow rate could have been set as a new physical input (i.e. variable parameter), however it is well known that increasing the reduing agent beyond 10 mol % results in increased levels of amorphous polymeric molybdenum oxide species (see MQiler et al. Z Anorg, A!lg. Chem. 1999, 625, 1 187-1 192). Providing this additional input would have increased the array dimensions without increasing the potential to isolate high quality crystalline products suitable for structure determination.
- the discovery array experiment was run as before, altering the ratio of reduced molybdenum to buffer reagents in addition to the overall level of dilution.
- the amount of reducing agent was set at 20 mol % in accordance with the approximate ratio of MoV : MoVI in the ⁇ Mo132 ⁇ target.
- the pH of the reactions within the array again varied periodically (see Figure 13). In this reaction scan, the pH was generally kept within the narrower pH range of ca. 4-5 due to the use of the acetate buffer stocks in place of a concentrated HCI solution, inspection of the reactions after a 4 day resting period revealed crystals of the pure ⁇ Mo132 ⁇ target had formed for reaction numbers 29 (cH) and 39 (dH).
- Figure 17 gives the mass yields for ⁇ Mo132 ⁇ for multiple repeated batches generated using conditions from reaction numbers 29 (left columns), 39 (right columns).
- the average yield for the 1 0 reactions produced using conditions from reaction number 29 (cl) 67 ⁇ 6 mg
- reaction number 36 was made up of H20 (1 .25 mL), 2.5 M Na2 o04 (2.5 mL) and 5.0 M HCl (2.5 mL) and produced large colourless columnar single crystals and branched aggregates of ⁇ Mo36 ⁇ (unit cell match) after resting for 2 days (995 mg,
- reaction number 46 was made up of 2.5 M Na2Mo04 (3.125 mL) and 5.0 M HCl
- reaction number 25 was made up of H20 (2.5 mL), 2.5 M Na2Mo04 (1 .125 mL),
- reaction number 35 (dE) was made up of H20 (1 .25 mL), 2.5 M Na2Mo04 (1 .5 mL),
- reaction number 45 was made up of 2.5 M Na2Mo04 (1 .875 mL), 0.25 M Na2S204 (1 .875 mL) and 5.0 M HCl (2.5 mL) and produced large black-blue square single crystals (plus a small amount of powdery precipitate) of ⁇ Mo 154 ⁇ (unit cell match) after resting for 2 days (368 mg, 1 .1 9 x 1 0-2 mmol, 38.9%).
- reaction number 29 was made up of H20 (2.5 mL), 2.5 M Na2Mo04 (0.25 mL), 0.23 M N2H4 ⁇ HS04 (0.5 mL) 50% AcOH (1 .5 mL) and 4.0 M AcO(NH4) (1 .5 mL) and produced small brown cubic single crystals of ⁇ Mo132 ⁇ (unit ceil match) after resting for 4 days (61 mg, 2.1 3 x 1 0-3 mmol, 45.0%) .
- reaction number 39 (dl) was made up of H20 (1 .25 mL), 2.5 M Na2Mo04 (0.333 mL),
- reaction number 28 was made up of H20 (2.5 mL), 2.5 M Na2Mo04 (0.562 mL),
- X-ray diffraction structure analysis and crystailographic data Suitable single crystals were selected and mounted onto the end of a thin glass fibre using Fombiin oil.
- thermogravimetric analysis and crystallography Due to the large solvent content of the structure the reflection data is weak which give rises to several checkcif alerts. The data has been collected several times on multiple batches, and the structure is very well defined and reproducible. in the ⁇ Mn5 ⁇ , all atoms on the clusters were very well defined with disorder only in solvent part, and the main structure is very well defined. The overall compound formula was determined majoriy by crystallography and CHN analysis. Bond valence calculations were performed to determine the oxidation states of Mn centers.
- the preparation of crystals of compounds 1 to 5 provided a direct link to the flow rates used to generate the solutions from which the target compounds crystallized.
- the pumps could then be programmed to run at these rates in a repetitive fashion, collecting multiple batches of each of the desired solution compositions, thereby directly scaling-up the production of each of the target products. Over the multiple batches of crystallizations collected for compounds 1 -3 the yields of crystalline material obtained remained consistently high throughout each set of batches.
- the reagent set chosen for the SMM syntheses consisted of reagent grade MeOH for dilution; 0.5 M Mn(CI04)2-6 H20 in MeOH as the Mn source; 0.5 M triethyiamine (TEA) in MeOH as the base; and 0.25 M ethyl salicyloxime (Et-saoH2) in MeOH, 1 .5 M 4-ferf-butylpyridine (tBuPy) in MeOH, 0.125 M pivalic acid (Piv) in MeOH, and 0.125 M 2-hydroxymethylpyridine (HMP) in MeOH as ligands. Similar to the POM-based processes, the family of coordination clusters was obtained in a straight forward and rapid fashion. Mn30(Et-sao)3(MeOH)3(CI04)
- the second row (row b) in the array began with the dilution ratio set to 6:4 and the Et-saoH2 content reset to 0%.
- the ratio of Et-saoH2 with respect to TEA and Mn then increased across each row of the array as the dilution factor decreased down the columns.
- almost half of the fifty reactions in the array resulted in the formation of dark square/rectangular block crystals after resting for 4 to 5 days (characterized as compound 6 via crystallographic unit cell checks and CHN elemental analysis). Due to the large number of successful crystallizations from the array, a yield map for the product was calculated based on the theoretical Mn content for each reaction (see Figure 6). Inspection of the yield map graphic shows a general trend of product yield increasing with
- the starting point (reaction number 1 , aA) was set at an initial dilution ratio of 8:2 (i.e. 80% MeOH and 20% reagent solutions by volume), the ratio of Et-saoH2 to Mn to TEA was set at a constant 2:1 :1 by volume, and the amount of ligand with respect to Mn was initially 0%. Variation of the tBuPy amount (by volume, with respect to Mn) and the dilution ratio subsequently led to the successful crystallization of compound 7 for a number of reactions in the array output.
- Compounds 8 and 9 were similarly obtained by variation of the other ligand sources with respect to Et-saoH2, Mn and TEA inputs.
- Described below is a process for the preparation of self-assembled nanoclusters with minimum human input.
- the use of a computer-controlled evolutionary algorithm is a key enabling technology for the development of self-assembled nanostructures in an
- the fitness function for the wheel is optimal at pH 1 and the colour is blue, and the fitness function for the ball is optimal at pH 4 and the colour is brown. Both parameters were normalized and aggregated to confirm a single objective optimization problem. Additional characterization by DLS and Raman spectroscopy validated the experimental results.
- the schematic of the flow system set up is shown in Figure 19.
- the chromosome in the system is composed of four parameters, or genes. These parameters include the four chemical inputs required to synthesize the different products, namely molybdenum, acid, reducing agent and buffer.
- An aqueous solution of Na2MoG4- 2H20 was employed as a source of molybdenum; Na2S204 and hydrazine were employed as reducing agents.
- the pH was regulated by means of HCI and a buffer solution formed by mixing AcOH and NH40Ac.
- the target polyoxometa!lates were 10 Na15[MoVI126MoV28O462H14(H2O)70]0.5[MoVI124MoV28O457H14(H2O)68]0.5 ⁇ ca. 400 H20, referred to as ⁇ Mo 154 ⁇ , and 11
- each compound was synthesized varying three parameters only as shown in Table 1 above for set-ups A and B.
- Three chemical inputs (three pumps) were employed using, initially, relatively dilute conditions.
- the reaction mixture for set-up A consisted of a combination of aqueous solutions of the molybdenum source, HCI and sodium dithionate (as the reducing agent).
- Set-up B was very similar, changing the acid solution with the buffer, which was obtained by mixing a solution of AcOH (50%) and NH40Ac (4M) (1 :1 v.v).
- UV-Vis spectroscopy was selected as the analytical system to characterise the reaction and to calculate the fitness function, denoted by J1. Relatively diluted conditions were needed to obtain suitable spectra.
- the fitness function was based on a single measurement. Indeed, it was defined as
- Amax and Amin correspond to the absorbance at the wavelengths where the compounds are expected to absorb.
- the simplex algorithm is designed to minimize functions. Nevertheless, in this system the aim was to maximize the amount of compounds 10 and 11. Therefore, the algorithm was modified to maximize the fitness function.
- the pH of the different reaction mixtures was studied for two reasons. In the first place, it gives information about the pH range in which each compound is formed. This information was employed later when a higher number of parameters were simultaneously optimized. Moreover, as the compound preparations have been well described in the literature, the pH was monitored to validate the results of the optimization.
- FIG. 9 shows the DLS results for two solutions obtained during the preparation of ⁇ Mo 154 ⁇ and ⁇ Mo132 ⁇ . The results show the presence of nanoparticles with a hydrodynamic diameter of 3.6 nm (corresponding to ⁇ Mo154 ⁇ ) and 2.8 nm (corresponding to the ⁇ Mo132 ⁇ ). ⁇ Mo154 ⁇ and ⁇ Mo132 ⁇
- Multi-objective optimization problems can be solved employing preference based methods (Yu et al. Introduction to Evolutionary Algorithms 2010, Springer- Verlag, London). In this way, the results corresponding to the UV- is and the pH readings were normalized and added in a single aggregate fitness function [2], using a weight factor X to control the importance of each parameter to the overall J2 value:
- X is a weight factor
- Amax and Amin correspond to the absorbance at the maximum and minimum wavelengths studied
- Arange is the maximum difference expected between the maximum and the minimum absorbance
- pHexp is the experimental value of the pH observed
- pHobj is the desired pH
- pHrange is the expected range of variation.
- the system provided here is designed to maximise the amount of product in solution in the early stages of the reaction. Therefore, it is logical that a high amount of reducing agent should favour the formation of both products, since it favours the reduction of molybdenum centres. Nevertheless, it is interesting to note that the excess of reducing agent could lead to an over-reduction of molybdenum.
- the formation of both compounds indicates that the self-assembly is fast and efficient.
- the combination of the J2 values obtained in the synthesis of both compounds under set-up C shows a chemical fitness landscape with two well-defined areas where each product has been synthesized. ⁇ Mo154 ⁇ may be formed under a wider range of pH values and reagent compositions.
- Figure 1 1 shows the combined fitness landscape obtained for the synthesis of ⁇ Mo 154 ⁇ and ⁇ Mo132 ⁇ as a function of the pH and the ratio of reducing agent (hydrazine) to Mo source. The results indicate the space regions where the J functions were maximized.
- UV-Vis spectroscopy is shown to provide efficient monitoring of the process and the spectra were employed to calculate the fitness function, and thereby control the preparation of further products.
- the formation of both ⁇ Mo154 ⁇ and ⁇ Mo132 ⁇ was confirmed by DLS.
- These experiments provide additional information about the pH range in which each compound is formed. in a more challenging scenario, it has proven possible to synthesize and discriminate between the big ⁇ Mo132 ⁇ kepierate and the ⁇ Mo 154 ⁇ wheel under reaction conditions which could potentially form both.
- the employment of a multi-objective optimization approach based on a simultaneous optimization of the UV-Vis spectra and the pH of the solution has been very effective to form the materials.
- Raman spectroscopy confirmed the presence of both clusters. E vo!ved- Chemical-Entity
- the processes of the invention are also suitable for use in the evolution of methods for the preparation of organic compounds, particularly in sequential organic reactions.
- the organic chemistry may be guided using a fitness function which can be either property or target based (or a combination thereof).
- the fitness function using a random seed, mutations, and sensor-based input is to guide the synthetic path on a pathway through a combinatorial array of reactions without requiring that the whole array is synthesised and tested. This combines a series of reactions in sequence in a flow system.
- An example system may use a core skeleton with 'n' orthogonal functional groups and 'm' different reagents per functional group.
- the system may also allow ⁇ ' different residence times within the flow reactor and 'p' Other conditions' e.g. temperature, concentration. In one situation, there may be three different residence times, o, which could lead to three different outcomes (for each combination of m, n and p).
- the core has 3 functional groups, and each group may react with one of 9 reagents, at 3 different residence times and at 3 different temperatures, there is the potential for 243 different products. Where there are further options, the number of possible products increases significantly.
- IR spectroscopy allows for quick analysis of both products and reagents in a flow system, and allows the system to feedback from product to reagents in a very fast way. IR spectroscopy is well known to be useful in allowing a chemist to determine the presence and absence of certain key covalent bonds (e.g. carbonyl bonds).
- the reaction system provided the core cyclopentadiene (B) for reaction in a flow system with an aldehyde compound (1-3).
- the resulting cycloadduct (B1-3) was reacted with by an amine (4-6) to provide nine possible imine products (B1 -3,4-6).
- that imine may be reduced and the resulting amine reacting to provide a tertiary amine product.
- the initial experiments looked at the first two reaction steps.
- the cyclopentadiene and one of the aldehyde compounds was supplied to a first reactor (R1 ).
- the product material was taken to a second reactor (R2) which was supplied with oneof the amine compounds.
- R1 the core molecule B was combined with an equimolar volume of dienophile 1-3 and catalyst.
- the mixture from reactor R1 was added resulting in a 1.5 solution in dry THF, in which one of the 3 M solutions in THF was flowed at half of the flow rate of the cycloadducts B1-3 to keep the aldehyde : amine ratio as 1 : 1 (mmol : mmol) of amines 4-6.
- the IR spectra relative to the first generation were acquired in a separated experiment where R1 was directly connected to the ATR-IR flow cell to keep the same residence time than in the two step reactions.
- the flow conditions relative to the automated synthesis of the two generations used to carry out these experiments are reported. '
- t R is the reidnce time in R1 and t R2 is the residence time in R2.
- the ATR-iR data collected from each experiment were differently processed in a semi-automated way in order to find a universal mathematical parameter to correlate to the outcome of a generic reaction.
- the initial new flow setup was programmed to compare the acquired IR spectrum with a simulated one and it should be automatically stopped to mix reactants once a spectrum with a (80%) similarity to the selected one is found.
- the experimental spectra was compared with the sum of the spectra from the starting materials point by point, allowing a calculation of the minimum square error (MSE), which is indicative of how different is one spectrum to the other.
- MSE minimum square error
- Con. is the percentage conversion to B1 , B2 and B3.
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| EP13726818.1A EP2855008A1 (en) | 2012-05-25 | 2013-05-24 | Methods of evolutionary synthesis including embodied chemical syntheses |
| US14/402,943 US9757706B2 (en) | 2012-05-25 | 2013-05-24 | Methods of evolutionary synthesis including embodied chemical syntheses |
| JP2015513279A JP6276256B2 (en) | 2012-05-25 | 2013-05-24 | Evolutionary synthesis methods including embodied chemical synthesis |
| CA2874698A CA2874698A1 (en) | 2012-05-25 | 2013-05-24 | Methods of evolutionary synthesis including embodied chemical syntheses |
| CN201380039456.2A CN104507564B (en) | 2012-05-25 | 2013-05-24 | Evolution synthetic method including concrete chemosynthesis |
| BR112014029371A BR112014029371A2 (en) | 2012-05-25 | 2013-05-24 | evolutionary synthesis methods including incorporated chemical syntheses |
| US15/669,080 US9962677B2 (en) | 2012-05-25 | 2017-08-04 | Methods of evolutionary synthesis including embodied chemical syntheses |
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| US11697102B2 (en) | 2019-09-13 | 2023-07-11 | Basf Se | Method and apparatus for assistance of the production of a functional material |
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| WO2023131726A1 (en) | 2022-01-10 | 2023-07-13 | The University Court Of The University Of Glasgow | Autonomous exploration for the synthesis of chemical libraries |
| WO2025078643A1 (en) | 2023-10-13 | 2025-04-17 | The University Court Of The University Of Glasgow | Chemical synthesis optimiser |
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| JP2015520674A (en) | 2015-07-23 |
| EP2855008A1 (en) | 2015-04-08 |
| US9757706B2 (en) | 2017-09-12 |
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| GB201209239D0 (en) | 2012-07-04 |
| BR112014029371A2 (en) | 2017-06-27 |
| US9962677B2 (en) | 2018-05-08 |
| CN104507564B (en) | 2017-03-08 |
| CN104507564A (en) | 2015-04-08 |
| US20150133306A1 (en) | 2015-05-14 |
| US20170354946A1 (en) | 2017-12-14 |
| CA2874698A1 (en) | 2013-11-28 |
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