WO2013036465A2 - A conditional replicating cytomegalovirus as a vaccine for cmv - Google Patents
A conditional replicating cytomegalovirus as a vaccine for cmv Download PDFInfo
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- WO2013036465A2 WO2013036465A2 PCT/US2012/053599 US2012053599W WO2013036465A2 WO 2013036465 A2 WO2013036465 A2 WO 2013036465A2 US 2012053599 W US2012053599 W US 2012053599W WO 2013036465 A2 WO2013036465 A2 WO 2013036465A2
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- cmv
- replication defective
- conditional replication
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- A61K2039/555—Medicinal preparations containing antigens or antibodies characterised by a specific combination antigen/adjuvant
- A61K2039/55511—Organic adjuvants
- A61K2039/55577—Saponins; Quil A; QS21; ISCOMS
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2710/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
- C12N2710/00011—Details
- C12N2710/16011—Herpesviridae
- C12N2710/16111—Cytomegalovirus, e.g. human herpesvirus 5
- C12N2710/16134—Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
Definitions
- the present invention relates to methods of inducing an immune response to cytomegalovirus (CMV) using a genetically modified CMV that is conditionally replication defective.
- CMV cytomegalovirus
- the present invention also relates to a CMV which has been recombinantly altered to allow for external control of viral replication. Compositions comprising the replication defective CMV are also encompassed by the present invention.
- Cytomegalovirus also known as human herpesvirus 5 (HHV-5)
- HHV-5 human herpesvirus 5
- CMV infection is found fairly ubiquitously in the human population, with an estimated 40-80% of the United States adult population having been infected. The virus is spread primarily through bodily fluids and is frequently passed from pregnant mothers to the fetus or newborn. In most individuals, CMV infection is latent, although virus activation can result in high fever, chills, fatigue, headaches, nausea, and splenomegaly.
- CMV infection in immunocompromised individuals can cause severe morbidity, including pneumonia, hepatitis, encephalitis, colitis, uveitis, retinitis, blindness, and neuropathy, among other deleterious conditions.
- CMV infection during pregnancy is a leading cause of birth defects (Adler, 2008 J.
- CMV infects various cells in vivo, including monocytes, macrophages, dendritic cells, neutrophils, endothelial cells, epithelial cells, fibroblasts, neurons, smooth muscle cells, hepatocytes, and stromal cells (Plachter et al. 1996, Adv. Virus Res. 46:195).
- laboratory strains AD 169 Elek & Stern, 1974, Lancet 1:1
- Towne Plotkin et al., 1975, Infect. Immun.
- the present invention is directed to conditional replication defective CMV (rdCMV) and the use of rdCMV in compositions and methods of treating and/or decreasing the likelihood of an infection by CMV or pathology associated with such an infection in a patient.
- the rdCMV described herein comprises a nucleic acid encoding one or more fusion proteins that comprise an essential protein fused to a destabilizing protein. In the absence of a stabilizing agent, the fusion protein is degraded.
- the rdCMV can be grown in tissue culture under conditions that allow for replication (i.e., in the presence of the stabilizing agent) but replication is reduced, and preferably prevented, when administered to a patient (in the absence of the stabilizing agent).
- the rdCMV comprises a nucleic acid encoding one or more fusion proteins that comprise an essential protein fused to a destabilizing protein.
- the nucleic acids encoding the wild type essential protein are no longer present in the rdCMV and thus the fusion protein is required for viral replication.
- the essential proteins are selected from the group consisting of IE1/2, UL51, UL52, UL79 and UL84 and the destabilizing protein is FKBP or a derivative thereof.
- compositions comprising an isolated rdCMV and a pharmaceutically acceptable carrier.
- the composition can further comprise an adjuvant including, but no limited to ISCOMATRTX® adjuvant and aluminium phosphate adjuvant.
- Another embodiment of the present invention is use of the rdCMV composition to induce an immune response against CMV in a patient.
- Patients can be treated prophylactically or therapeutically by administration of the rdCMV of the present invention.
- Prophylactic treatment provides sufficient protective immunity to reduce the likelihood or severity of a CMV infection, including primary infections, recurrent infections (i.e., those resulting from reactivation of latent CMV) and super-infections (i.e., those resulting from an infection with a different stain of CMV than previously experienced by the patient).
- females of childbearing age are vaccinated to decrease the likelihood of CMV infection (either primary, recurrent or super) during pregnancy and thus decrease the likelihood of transmission of CMV to the fetus.
- Therapeutic treatment can be performed to reduce the length/severity of a current CMV infection.
- Another embodiment of the present invention is methods of making the rdCMV of the invention comprising propagating the rdCMV on epithelial cells, such as ARPE-19 cells (ATCC Accession No. CRL-2302), in the presence of Shield- 1.
- the rdCMV is propagated on epithelial cells on microcarriers or other high density cell culture systems.
- FIGS. 1A-1B shows a schematic diagram of the construction of a strain of CMV with restored expression of the pentameric gH complex.
- A Strategy for generation of self-excisable Bacterial Artificial Chromosome (BAC) to manipulate AD 169 viral genome.
- B Repair of the frame shift mutation in UL131 to restore its expression.
- C Replacement of GFP with a ere recombinase gene to create a self excisable CMV BAC.
- FIGS. 2A-2D show the effect of conventional inactivation methods on gH complex immunogenicity.
- ⁇ -irradiation (A, B) and B-propiolactonE (BPL) (C, D) were used to inactivate gH complex expressing CMV.
- Inactivation kinetics were determined by plaque assay (A, C) while immunogenicity was determined by evaluating sera from mice administered the CMV for neutralizing activity against viral epithelial cell entry (B, D).
- FIG. 3 shows the Shield 1 concentration dependent progeny virus production of gH complex expressing CMV with various essential proteins fused to a FKBP derivative.
- ARPE-19 cells were infected with the rdCMV viruses at a multiplicity of 0.01 PFU/cell for 1 h, washed twice with fresh medium, and incubated in the growth medium containing 0, 0.05, 0.1 0.5 or 2 ⁇ of Shield- 1. Seven days post infection, the cell free virus was collected, and virus titers were determined by TCID50 assay on ARPE-19 cells in the presence of 2 ⁇ of Shield 1.
- FIGS. 4A-4D show growth kinetics of rdCMV in ARPE-19 cells.
- Cells were infected with viruses containing (A) IEl/2, (B) UL51, (C) IE1/2-UL51 fusion proteins or the (D) parental beMAD virus at multiplicity of 0.01 PFU/cell. After one hour, the cells were washed twice with fresh medium, and incubated in the absence (open circle) or presence (closed circle) of 2 ⁇ of Shield- 1. Cell-free virus was collected at the indicated time points after infection, and infectious virus was quantified by TCID50 assay on ARPE-19 cells in the medium containing 2 ⁇ of Shield- 1.
- FIGS. 6A-6C Immunogenicity analysis of the IE1/2-UL51 rdCMV in mice, rabbits and rhesus macaques.
- A Mice were immunized at weeks 0 and 4 with beMAD (open circle) or the IE 1/2- UL51 rdCMV(closed circle).
- B Rabbits were immunized at weeks 0, 3 and 8 with 10 ⁇ g beMAD or the indicated rdCMV.
- Rhesus macaques were immunized at weeks 0 and 8 with 100 ⁇ g beMAD or the IEl/2-UL51rdCMV. In each case, serum samples were collected and analyzed by CMV micro-neutralization assay on ARPE-19 cells. Lines indicate the geometric mean titers of the neutralization (NT50) in each group.
- FIG. 7 shows longitudinal neutralizing titers in rhesus macaques vaccinated with the double fusion virus IE1/2-UL51.
- the immune sera were collected at indicated time points and evaluated in a viral neutralization assay.
- the GMT of NT50 titers is plotted longitudinally with the standard error for the group.
- AAHS amorphous aluminum hydroxylphosphate sulfate
- IMX ISCOMATRTX
- HNS base buffer.
- FIGS. 8A-8D show IFN- ⁇ ELISPOT in rhesus macaques with the double fusion virus IE1/2- UL51 vaccination with either a 100 ⁇ g (A) or 10 ⁇ g (B-D) per dose. Either no adjuvant (A-B), AAHS (C) or ISCOMATRTX (D) were used. PBMC were stimulated with peptide pools representing HCMV
- PBMC were collected from monkeys given either a 100 ⁇ g or 10 ⁇ g dose of vaccine with ISCOMATRTX® as adjuvant. PBMCs were stimulated with peptide pools representing HCMV antigens, followed by staining for IFN- ⁇ and CD4+/CD8+ surface T-cell markers. The data are presented as number of CD4+/CD8+ positive, IFN- ⁇ positive cells per million PBMC.
- CMV purified virus
- SEB mitogen used as positive control agent
- IMX ISCOMATRTX.
- FIG. 10 shows Merck aluminum phosphate adjuvant (MAP A) can enhance neutralizing antibody titers in monkeys.
- Rhesus monkeys were immunized with a 30 ⁇ g dose of the double fusion virus vaccine formulated in HNS (base buffer), AAHS or MAPA at week 0 and 8.
- the serum samples were collected at week 12 and evaluated for neutralizing titers.
- the lines represent geometric means for the group.
- FIGS. 11A-11B show gH expressing CMV stability in Hank's balanced salt solution (HBSS) at different temperatures.
- HBSS Hank's balanced salt solution
- FIGS. 12A-12B show the effect of pH on the stability of gH expressing CMV at room temperature.
- A CMV samples in buffers with different pH were stored at room temperature for 4 days before CMV virus stability was measured using a viral entry assay.
- B EC50 values were calculated for the samples using the viral entry assay results.
- FIGS. 13A-13B show the effect of urea alone or in combination with sodium chloride on gH expressing CMV virus stability.
- A 2% urea alone or in combination with 150mM NaCl was added to CMV in 25 mM histidine buffer, pH 6 at room temperature for 4 days before CMV virus stability was measured using a viral entry assay.
- B EC50 values were calculated for the samples using the viral entry assay results.
- FIGS. 14A-14B show the effect of ionic strength on gH expressing CMV virus stability.
- A Increasing concentrations of NaCl (0 mM, 75 mM, 150 mM and 320 mM NaCl) was added to CMV in 25 mM histidine buffer, pH 6 at room temperature for 4 days before CMV virus stability was measured using a viral entry assay.
- B EC50 values were calculated for the samples using the viral entry assay results.
- FIG. 15 shows the effect of cryoprotectants on gH expressing CMV stability against freezing- thawing cycles.
- the indicated cryoprotectants were added to CMV in 25 mM histidine buffer, pH 6 and subjected to three freeze-thaw cycles before CMV virus stability was measured using a viral entry assay. EC50 values were calculated for the samples using the viral entry assay results.
- FIGS. 16A-16B show the effect of storage temperature on inducing CMV neutralizing antibodies in a mouse immunogenicity study.
- Mice were immunized on day 0 and boosted on day 21 followed by bleeding on day 28.
- the mouse serum was tested for neutralizing antibodies against a gH expressing CMV using ARPE-19 cells.
- NT50 titers were obtained by non-linear curve fitting.
- A The CMV samples were stored at different temperatures for 3 months prior to the immunogenicity study.
- B The CMV samples were stored at different temperatures for 8 hours following thawing and prior to the immunogenicity study.
- the present invention is directed to conditional replication defective CMV
- rdCMV rdCMV
- the rdCMV described herein encodes one or more fusion proteins that comprise an essential protein fused to a destabilizing protein instead of the wild type essential protein. In the absence of a stabilizing agent, the fusion protein is degraded by host cell machinery. In the presence of a stabilizing agent, the fusion protein is stabilized and not degraded.
- Suitable fusion proteins for use in the present invention retain sufficient essential protein activity to facilitate viral replication in a host cell in the presence of a stabilizing agent and cause a decrease (preferably greater than 50%, 75%, 90%. 95%, or 99% reduction) in CMV replication in the absence of a stabilizing agent.
- the essential protein for use in the fusion protein encodes non-structural proteins and are thus not packaged into the rdCMV virions.
- Suitable essential proteins identified herein include the CMV proteins encoded by the essential genes IEl/2, UL51, UL52, UL79 and UL84.
- Patent Publication 2009/0215169 which discloses compositions, systems and methods for modulating the stability of proteins using a small-molecule. Briefly, a protein is fused to a stability-affecting protein, FKBP or a derivative thereof. An exogenously added, cell permeable small-molecule, Shield- 1 (Shld-1), interacts with the FKBP or derivative thereof and stabilizes the fusion protein. In the absence of Shield- 1, the FKBP or derivative thereof directs the fusion protein to be degraded by host cell machinery.
- Shield- 1 Shield- 1
- an essential CMV protein is fused to a FKBP or derivative thereof. In the presence of Shield- 1, the fusion protein is stabilized.
- the FKBP or derivative thereof directs the fusion protein to be degraded by host cell machinery.
- replication of rdCMV is reduced (preferably by greater than 50%, 75%, 90%. 95%, or 99% as compared to CMV not containing a destabilized essential protein) or prevented.
- the recombinant virus to be used in the method of the invention also displays an immunogenic pentameric gH complex on its virion.
- Embodiments also include the recombinant CMV or compositions thereof, described herein, or a vaccine comprising or consisting of said CMV or compositions (i) for use in, (ii) for use as a medicament for, or (iii) for use in the preparation of a medicament for: (a) therapy (e.g., of the human body); (b) medicine; (c) inhibition of CMV replication; (d) treatment or prophylaxis of infection by CMV or, (e) treatment, prophylaxis of, or delay in the onset or progression of CMV-associated disease(s).
- therapy e.g., of the human body
- medicine e.g., of the human body
- inhibition of CMV replication e.g., inhibition of CMV replication
- treatment or prophylaxis of infection by CMV or e. treatment, prophylaxis of, or delay in the onset or progression of CMV-associated disease(s).
- the recombinant CMV, compositions thereof, and/or vaccines comprising or consisting of said CMV or compositions can optionally be employed in combination with one or more anti-viral agents (e.g., anti-viral compounds or antiviral immunoglobulins; combination vaccines, described infra).
- anti-viral agents e.g., anti-viral compounds or antiviral immunoglobulins; combination vaccines, described infra.
- the term "induce an immune response” refers to the ability of a conditional replication defective CMV to produce an immune response in a patient, preferably a mammal, more preferably a human, to which it is administered, wherein the response includes, but is not limited to, the production of elements (such as antibodies) which specifically bind, and preferably neutralize, CMV and/or cause T cell activation.
- a "protective immune response” is an immune response that reduces the likelihood that a patient will contract a CMV infection (including primary, recurrent and/or super-infection) and/or ameliorates at least one pathology associated with CMV infection and/or reduces the severity/length of CMV infection.
- an immunologically effective amount refers to the amount of an immunogen that can induce an immune response against CMV when administered to a patient that can protect the patient from a CMV infection (including primary, recurrent and/or super-infections) and/or ameliorate at least one pathology associated with CMV infection and/or reduce the severity/length of CMV infection in the patient.
- the amount should be sufficient to significantly reduce the likelihood or severity of a CMV infection.
- Animal models known in the art can be used to assess the protective effect of administration of immunogen. For example, immune sera or immune T cells from individuals administered the immunogen can be assayed for neutralizing capacity by antibodies or cytotoxic T cells or cytokine producing capacity by immune T cells.
- the assays commonly used for such evaluations include but not limited to viral neutralization assay, anti- viral antigen ELISA, interferon-gamma cytokine ELISA, interferon-gamma ELISPOT, intracellular multi-cytokine staining (ICS), and
- conditional replication defective virus refers to virus particles that can replicate in a certain environments but not others.
- a virus is made a conditional replication defective virus by destabilization of one or more proteins essential for viral replication.
- the nucleic acids encoding the wild type, non-destabilized essential proteins are no longer present in the conditional replication defective virus.
- viral replication is decreased by preferably greater than 50%, 75%, 90%. 95%, 99%, or 100% as compared to a virus with no destabilized essential proteins.
- viral replication can occur at preferably at least 75%, 80%, 90%, 95%, 99% or 100% of the amount of replication of a CMV that does not contain a destabilized essential protein.
- one or more essential proteins are destabilized by fusion with a destabilizing protein such as FKBP or a derivative thereof. Such fusion proteins can be stabilized by the presence of a stabilizing agent such as Shield- 1.
- rdCMV refers to a conditional replication defective cytomegalovirus.
- the immune response induced by a replication defective virus as compared to its live virus counterpart is the same or substantially similar in degree and/or breadth.
- the morphology of a replication defective virus by electron microscopy analysis is indistinguishable or substantially similar to its live virus counterpart.
- FKBP refers to a destabilizing protein of SEQ ID NO: 11. Fusion proteins containing FKBP are degraded by host cell machinery.
- FKBP derivative refers to a FKBP protein or portion thereof that has been altered by one or more amino acid substitutions, deletions and/or additions. The FKBP derivatives retain substantially all of the destabilizing properties of FKBP when fused to a protein and also retain substantially all of the ability of FKBP to be stabilized by Shield- 1.
- Preferred FKBP derivatives have one or more of the following substitutions at the denoted amino acid positions F15S, V24A, H25R, F36V, E60G, M66T, R71G, D100G, D100N, E102G, K105I and L106P.
- the FKBP derivative having the F36V and L106P substitutions (SEQ ID NO: 12) is particularly preferred.
- the nucleic acid that encodes the FKBP or FKBP derivative contains at least some codons that are not commonly used in humans for endogenous FKBP. This decreases the likelihood that the FKBP or FKBP derivative of the fusion protein will rearrange or recombine with its counterpart in human genome.
- the nucleic acid sequence of SEQ ID NO: 13 encodes SEID NO: 12 using such codons.
- Shield- 1 or “Shldl” refer to a synthetic small molecule that binds to wild-type FKBP and derivatives thereof and acts as a stabilizing agent. Binding is about 1,000-fold tighter to the F36V derivative compared to wild-type FKBP
- Shield-1 can be synthesized (essentially as described in Holt et al., 1993, J. Am. Chem. Soc. 115:9925-38 and Yang et al., 2000, J. Med. Chem. 43:1135-42 and Grimley et al., 2008, Bioorganic & Medicinal Chemistry Letters 18:759) or is commercially available from Cheminpharma LLC (Farmington, CT) or Clontech
- Shield-1 has the following structure:
- fused or "fusion protein” refer to two polypeptides arranged in-frame as part of the same contiguous sequence of amino acids. Fusion can be direct such there are no additional amino acid residues between the polypeptides or indirect such that there is a small amino acid linker to improve performance or add functionality. In preferred embodiments, the fusion is direct.
- the terms "pentameric gH complex” or "gH complex” refer to a complex of five viral proteins on the surface of the CMV virion.
- the complex is made up of proteins encoded by UL128, UL130, and UL131 assembled onto a gH/gL scaffold (Wang and Shenk, 2005 Proc Natl Acad Sci USA. 102:1815; Ryckman et al, 2008 J. Virol. 82:60).
- the sequences of the complex proteins from CMV strain AD 169 are shown at GenBank Accession Nos.
- NP_783797.1 (UL128), NP_040067 (UL130), CAA35294.1 (UL131), NP_040009 (gH, also known as UL75) and NP 783793 (gL, also known as UL115).
- Some attenuated CMV strains have one or more mutations in UL131 such that the protein is not expressed and therefore the gH complex is not formed. In such cases, UL131 should be repaired (using methods such as those in Wang and Shenk, 2005 J. Virol. 79:10330) such that the gH complex is expressed in the rdCMV of the invention.
- the viruses of the present invention express the five viral proteins that make up the pentameric gH complex and assemble the pentameric gH complex on the viral envelope.
- essential protein refers to a viral protein that is needed for viral replication in vivo and in tissue culture.
- essential proteins in CMV include, but are not limited to, IE1/2, UL37xl, UL44, UL51, UL52, UL53, UL56, UL77, UL79, UL84, UL87 and UL105.
- the term "destabilized essential protein” refers to an essential protein that is expressed and performs its function in viral replication and is degraded in the absence of a stabilizing agent.
- the essential protein is fused to a destabilizing protein such as FKBP or a derivative thereof.
- a destabilizing protein such as FKBP or a derivative thereof.
- FKBP FKBP
- the fusion protein is expressed but degraded by host cell machinery. The degradation does not allow the essential protein to function in viral replication thus the essential protein is functionally knocked out.
- the fusion protein is stabilized and can perform its function at a level that can sustain viral replication that is preferably at least 75%, 80%, 90%, 95%, 99% or 100% of the amount of replication of a CMV that does not contain a destabilized essential protein.
- the methods of the present invention use a replication defective CMV (rdCMV) that expresses the pentameric gH complex.
- rdCMV replication defective CMV
- Any attenuated CMV virus that expresses the pentameric gH complex can be made replication defective according to the methods of the invention.
- the attenuated CMV is AD 169 that has restored gH complex expression due to a repair of a mutation in the UL131 gene (see Example 1).
- Conditionally replication defective viruses are mutants in which one or more essential viral proteins have been replaced by a destabilized counterpart of the essential proteins.
- the destabilized counterpart is encoded by a nucleic acid that encodes a fusion protein between the essential protein and a destabilizing protein.
- the destabilized essential protein can only function to support viral replication when a stabilizing agent is present.
- methods described in US Patent Publication 2009/0215169 are used to confer a conditionally replication defective phenotype to a pentameric gH complex expressing CMV.
- a destabilizing protein a FKBP or FKBP derivative.
- the nucleic acids encoding the wild type essential protein are no longer present in the rdCMV.
- Shield-1 Shield-1 (Shld-1)
- the fusion protein is stabilized and the essential protein can function to support viral replication.
- Replication of the rdCMV in the presence of the stabilizing agent is preferably at least 75%, 80%, 90%, 95%, 99% or 100% of the amount of replication of a CMV that does not contain a destabilizing fusion protein (e.g, the parental attenuated CMV used to construct the rdCMV).
- the destabilizing protein of the fusion protein directs the fusion protein to be substantially degraded by host cell machinery. With no or minimal amounts of essential protein present, the CMV cannot replicate at an amount to produce or maintain a CMV infection in a patient.
- Replication of the rdCMV in the absence of the stabilizing agent does not take place or is reduced by preferably greater than 50%, 75%, 90%. 95%, or 99% as compared to a CMV that does not contain a destabilizing fusion protein (e.g, the parental attenuated CMV used to construct the rdCMV).
- the nucleic acid encoding an essential protein for CMV replication and/or establishment/maintenance of CMV infection is attached to a nucleic acid that encodes FKBP or a derivative thereof.
- the encoded fusion protein comprises the FKBP or FKBP derivative fused in-frame to the essential protein.
- the encoded fusion protein is stable in the presence of Shield- 1. However, the encoded fusion protein is destabilized in the absence of Shield- 1 and is targeted for destruction.
- the FKBP is SEQ ID NO : 11.
- the FKBP derivative is FKBP comprising one or more amino acid substitutions selected from the group consisting of: F15S, V24A, H25R, F36V, E60G, M66T, R71G, D100G, D100N, E102G, K105I and L106P.
- the FKBP derivative comprises the F36V and/or the L106P substitutions (SEQ ID NO:12).
- the FKBP derivative is encoded by SEQ ID NO: 13.
- the essential proteins targeted for destabilization by fusion with FKBP or a derivative thereof 1) are essential for viral replication; 2) can accommodate the fusion of the destabilizing protein without substantially disrupting function of the essential protein; and 3) can accommodate the insertion of a nucleic acid encoding the FKBP or derivative thereof at the 5' or 3' end of the viral ORF encoding the essential protein without substantially disrupting the ORFs of other surrounding viral genes.
- the essential proteins targeted for destabilization by fusion with FBBP or derivative thereof encode non-structural proteins and, as such, have a decreased likelihood of being packaged into recombinant CMV virions. Table 1 shows CMV genes that meet the aforementioned criteria. Table 1: Viral enes selected for construction of FKBP fusion
- the present invention encompasses rdCMV that comprise fusion proteins with an essential protein or derivative thereof fused to the destabilizing protein.
- Essential protein derivatives contain one or more amino acid substitutions, additions and/or deletions relative to the wild type essential protein yet can still provide the activity of the essential protein at least well enough to support viral replication in the presence of Shield- 1. Examples of measuring virus activity are provided in the Examples infra. Methods known in the art can be used to determine the degree of difference between the CMV essential protein of interest and a derivative. In one embodiment, sequence identity is used to determine relatedness.
- Derivatives of the invention will be preferably at least 85% identical, at least 90% identical, at least 95% identical, at least 97% identical, at least 99% identical to the base sequence.
- the percent identity is defined as the number of identical residues divided by the total number of residues and multiplied by 100. If sequences in the alignment are of different lengths (due to gaps or extensions), the length of the longest sequence will be used in the calculation, representing the value for total length.
- the one or more viral proteins essential for viral replication targeted for destabilization are selected from the group consisting of IEl/2, UL51 , UL52, UL84, UL79, UL87, UL37x 1, UL77 and UL53 or derivatives thereof.
- the one or more viral proteins essential for viral replication targeted for destabilization are selected from the group consisting of IE1/2, UL51, UL52, UL84, UL79, UL87.
- the one or more viral proteins essential for viral replication targeted for destabilization are selected from the group consisting of IE1/2, UL51, UL52, UL84, UL79, UL87.
- destabilization are selected from the group consisting of IE 1/2, UL51, UL52, UL79 and UL84.
- More than one essential protein can be destabilized by fusion to FKBP or derivative thereof.
- the essential proteins function at different stages of CMV replication and/or infection (including but not limited to, immediate early, early or late stages).
- the combination of viral proteins essential for viral replication targeted for destabilization are selected from the group consisting of IE1/2 and UL51, IE1/2 and UL52, IE1/2 and UL79, IEl/2 and UL84, UL84 and UL51 and UL84 and UL52.
- IE 1/2 and UL51 are targeted for destabilization in the same recombinant CMV.
- the fusion protein comprising IE 1/2 is SEQ ID NO:l and the fusion protein comprising UL51 is SEQ ID NO:3.
- SEQ ID NOS:l and 3 can be encoded by SEQ ID Nos:2 and 4, respectively.
- the genome of the rdCMV with the destabilized IEl/2 and UL51 is shown in SEQ ID NO:14.
- the FKBP or derivative thereof can be fused to the essential protein either directly or indirectly. In preferred embodiments, the FKBP or derivative thereof is fused to the essential protein directly.
- the FKBP or derivative thereof can be fused to the essential protein either at either the N- or C-terminus of the essential protein.
- the FKBP is fused to the N-terminus of the essential protein.
- More than one FKBP or derivative thereof can be fused to the essential protein.
- each of the individual FKBP or derivatives there of can be the same or different.
- the rdCMV described supra is inactivated further using a chemical or physical inactivation.
- a chemical or physical inactivation examples include heat treatment, incubation with formaldehyde, ⁇ -Propiolactone (BPL), or binary ethyleneimine (BEI), or gamma irradiation.
- Preferred methods do not disrupt or substantially disrupt the immunogenicity, including, but not limited to, the immunogenicity induced by the pentameric gH complex.
- the immune response elicited by the CMV that has been further inactivated is preserved or substantially preserved as compared to rdCMV with no additional inactivation treatment.
- the ability of the further inactivated CMV to induce neutralizing antibodies is comparable to those induced by rdCMV with no additional inactivation treatment.
- Inactivation regimen by any one or combination of the chemical or physical methods is determined empirically to ensure immunogenicity of CMV, including the pentameric gH complex.
- Replication of the rdCMV is substantially altered from the parental CMV in the absence of Shield- 1 (reduced by preferably greater than 50%, 75%, 90%. 95%, 99% or 100% as compared to a CMV that does not contain a destabilizing fusion protein).
- the rdCMV in the presence of at least 2 ⁇ Shield- 1 replicates preferably at least 90%, more preferably at least 95%, most preferably at least 99%, of the amount that a non-rdCMV replicates.
- a composition comprising the rdCMV of the invention has a viral titer of at least 10 5 pfu ml, more preferably at least 10 7 pfu/ml, in the presence of at least 2 ⁇ Shield- 1.
- rdCMV should not replicate substantially in the absence of Shield- 1.
- the quality of a replication defective mechanism is judged by how stringent the control is under the conditions not permissive for viral replication, i.e., the infectious titers of progeny virions under these conditions.
- the rdCMV of the present invention cannot replicate substantially (either in cell culture or within a patient) without Shield- 1 present. Its replication in ARPE-19 cells and other types of human primary cells is conditional, and a molar concentration of Shield- 1 greater than 0.1 ⁇ , preferable at least 2 uM, in the culture medium is required to sustain viral replication.
- a composition comprising the rdCMV of the invention has a viral titer of less than 2 pfu/ml, more preferably less than 1 pfu/ml, in the absence of Shield- 1.
- Methods to assess CMV replication can be used to assess rdCMV replication either in the absence or presence of Shield- 1.
- the TCID50 is used.
- rdCMV titers are determined by a 50% Tissue Culture Infective Dose (TCID50) assay. Briefly, this dilution assay quantifies the amount of virus required to kill 50% of infected hosts. Host cells (e.g., ARPE-19 cells) are plated and serial dilutions of the virus are added. After incubation, the percentage of cell death (i.e. infected cells) is observed and recorded for each virus dilution. Results are used to mathematically calculate the TCID50.
- TCID50 Tissue Culture Infective Dose
- the rdCMV titers are determined using a plaque assay.
- Viral plaque assays determine the number of plaque forming units (pfu) in a virus sample.
- a confluent monolayer of host cells e.g., ARPE-19 cells
- a confluent monolayer of host cells e.g., ARPE-19 cells
- a semi-solid medium such as agar or carboxymethyl cellulose
- a viral plaque is formed when a virus infects a cell within the fixed cell monolayer.
- the virus infected cell will lyse and spread the infection to adjacent cells where the infection-to-lysis cycle is repeated.
- the infected cell area will create a plaque (an area of infection surrounded by uninfected cells) which can be seen visually or with an optical microscope.
- Plaques are counted and the results, in combination with the dilution factor used to prepare the plate, are used to calculate the number of plaque forming units per sample unit volume (pfu/mL).
- the pfu/mL result represents the number of infective particles within the sample and is based on the assumption that each plaque formed is representative of one infective virus particle.
- a hu-SCID mouse model is used to evaluate the ability of an rdCMV to replicate in vivo. Briefly, pieces of human fetal tissues (such as thymus and liver) are surgically implanted in kidney capsules of SCID mice. The rdCMV is inoculated 2-3 months later when the human tissues are vascularized. Viral titers are assessed 3-4 weeks after inoculation in plaque assays. The animal experiments can be performed in the absence or presence of Shield- 1. Evaluation of Immune Response
- rdCMV of the invention to a patient elicits an immune response to CMV, preferably a protective immune response, that can treat and/or decrease the likelihood of an infection by CMV or pathology associated with such an infection in a patient.
- the immune response is, at least in part, to the pentameric gH complex.
- the immune response elicited by the rdCMV can be assessed using methods known in the art.
- Animal models known in the art can be used to assess the protective effect of adrrrinistration of the rdCMV.
- immune sera from individuals administered the rdCMV can be assayed for neutralizing capacity, including but not limited to, blockage of viral attachment or entry to a host cell.
- T cells from individuals administered the rdCMV can be assayed for cytokine producing capacity including, but not limited to, interferon gamma, in the presence of an antigen of interest.
- Animal challenge models can also be used to determine an immunologically effective amount of immunogen.
- Viral neutralization refers to viral specific antibodies capable of interrupting viral entry and/or replication in cultures.
- the common assay for measuring neutralizing activities is viral plaque reduction assay.
- the neutralization assays in this invention refer to serum titrations that can block virus entering cells.
- NT50 titers are defined as reciprocal serum dilutions to block 50% of input virus in viral neutralization assays.
- NT50 titers are obtained from nonlinear logistic four-parameter curve fitting.
- the present invention encompasses methods of making the rdCMV.
- the rdCMV of the invention are propagated in the presence of a stabilizing agent such as Shield- 1 on epithelial cells, preferably human epithelial cells, and more preferably human retinal pigmented epithelial cells.
- the human retinal pigmented epithelial cells are ARPE-19 cells deposited with the American Type Culture Collection (ATCC) as Accession No. CRL-2302.
- ATCC American Type Culture Collection
- Shield- 1 is present at a concentration of at least 0.5 ⁇ in the tissue culture media.
- Shield- 1 is present at a concentration of at least 2.0 ⁇ in the tissue culture media.
- the cells used to propagate the rdCMV are grown on microcarriers.
- a microcarrier is a support matrix allowing for the growth of adherent cells in spinner flasks or bioreactors (such as rotating wall microgravity bioreactors and fluidized bed bioreactors).
- Microcarriers are typically 125 - 250 ⁇ spheres with a density that allows them to be maintained in suspension with gentle stirring.
- Microcarriers can be made from a number of different materials including, but not limited to, DEAE-dextran, glass, polystyrene plastic, acrylamide, and collagen.
- the microcarriers can have different surface chemistries including, but not limited to, extracellular matrix proteins, recombinant proteins, peptides and charged molecules.
- Other high density cell culture systems such as Corning HyperFlask® and
- HyperStack® systems can also be used.
- the cell-free tissue culture media can be collected and rdCMV can be purified from it.
- CMV viral particles are about 200 nm in diameter and can be separated from other proteins present in the harvested media using techniques known in the art including, but not limited to ultracentrifugation through a density gradient or a 20% Sorbitol cushion.
- the protein mass of the vaccines can be determined by Bradford assay.
- Shield- 1 can be used to control replication of the rdCMV in conjunction with FKBP. After the desired amount of viral propagation in tissue culture cells is completed, the ability to replicate is no longer desirable. Shield- 1 is withdrawn from the rdCMV to make the virus replication deficient (e.g., in order to be administered to a patient). In one embodiment, the rdCMV is purified from Shield- 1 by washing one or more times. In another embodiment, the rdCMV is purified from Shield- 1 through ultracentrifugation. In another embodiment, the rdCMV is purified from Shield- 1 through diafiltrations. Diafiltrations is commonly used to purify viral particles. In one embodiment, filters are used with pore size of approximately 750 kilodalton which would only allow Shield- 1 to pass through the pores.
- the level of Shld-1 in the CMV composition after purification is at least 100-fold below the level needed to sustain replication in tissue culture.
- the level of Shield- 1 in the rdCMV composition after purification is 0.1 ⁇ or less. In another embodiment, the level of Shield- 1 in the rdCMV composition after purification is undetectable.
- Determination of Shield- 1 levels in a composition can be detected using a LC/MS (liquid chromatography-mass spectroscopy) or HPLC/MS (high performance liquid
- Adjuvants are substances that can assist an immunogen in producing an immune response. Adjuvants can function by different mechanisms such as one or more of the following: increasing the antigen biologic or immunologic half-life; improving antigen delivery to antigen- presenting cells; improving antigen processing and presentation by antigen-presenting cells; achieving dose-sparing, and, inducing production of immunomodulatory cytokines (Vogel, 2000, Clin Infect Dis 30:S266).
- the compositions of the invention comprise a rdCMV and an adjuvant.
- adjuvants can be employed to assist in the production of an immune response.
- adjuvants include aluminum hydroxide; aluminum phosphate, aluminum hydroxyphosphate, amorphous aluminum
- hydroxyphosphate sulfate adjuvant or other salts of aluminum; calcium phosphate; DNA CpG motifs; monophosphoryl lipid A; cholera toxin; E. coli heat-labile toxin; pertussis toxin; muramyl dipeptide; Freund's incomplete adjuvant; MF59; SAF; immunostimulatory complexes; liposomes; biodegradable microspheres; saponins; nonionic block copolymers;
- oil-based adjuvants including, but not limited to, incomplete Freund's adjuvant and MF59, are not used in the compositions of the invention.
- particulate adjuvants including, but not limited to,
- ISCOMATRIX® adjuvant and/or aluminium phosphate adjuvant are used in the compositions of the invention.
- a further feature of the invention is the use of a recombinant CMV described herein in a composition, preferably an immunogenic composition or vaccine, for treating patients with a CMV infection and/or reducing the likelihood of a CMV infection.
- the composition comprises a pharmaceutically acceptable carrier.
- pharmaceutically-acceptable carrier is meant to mean a liquid filler, diluent or encapsulating substance that may be safely used in systemic administration. Depending upon the particular route of administration, a variety of pharmaceutically acceptable carriers, well known in the art may be used.
- These carriers may be selected from a group including sugars, starches, cellulose and its derivatives, malt, gelatine, talc, calcium sulfate, vegetable oils, synthetic oils, polyols, alginic acid, phosphate buffered solutions including phosphate buffered saline, emulsifiers, isotonic saline, and pyrogen-free water.
- pharmaceutically acceptable carriers may contain different components such as a buffer, sterile water for injection, normal saline or phosphate-buffered saline, sucrose, histidine, salts and polysorbate. Terms such as “physiologically acceptable”, “diluent” or “excipient” can be used interchangeably.
- the rdCMV of the invention is administered to a patient to elicit an immune response. It is desirable to minimize or avoid the loss of the rdCMV
- composition potency during storage of the immunogenic composition includes but not limited to (1) sustained stability in storage, (2) resistant to stressed freezing-thawing cycles, (3) stable at ambient temperatures for up to a week, (4) maintenance of immunogenicity, (5) compatible with adjuvanting strategy.
- Conditions that affect rdCMV stability include, but are not limited to, buffer pH, buffer ionic strength, presence/absence of particular excipients and temperature.
- the compositions comprise buffers to increase the stability of purified rdCMV viral particles suitable as vaccine composition.
- the preservation of the integrity of viral particles can be assessed by immunogenicity assays in mice and/or viral entry assays. Viral entry events dependent on the integrity and functions of viral glycoproteins, including the pentameric gH complex.
- the pentameric gH complex also provides the substantial immunogenicity of rdCMV, thus the two properties are linked.
- the rdCMV is stored in buffer comprising 15-35 mM Histidine andl 00-200 mM NaCl at a pH of between 5 and 7.
- the buffer comprises 25 mM Histidine and 150 mM NaCl at pH6.
- sugars can be added to provide further stability, such as polyols (including, but not limited to, mannitol and sorbitol); monosaccharides (including, but not limited to, glucose, mannose, galactose and fructose); disaccharides (including, but not limited to, lactose, maltose, maltose, sucrose, lactulose and trehalose) and trisaccharides
- polyols including, but not limited to, mannitol and sorbitol
- monosaccharides including, but not limited to, glucose, mannose, galactose and fructose
- disaccharides including, but not limited to, lactose, maltose, maltose, sucrose, lactulose and trehalose
- trisaccharides including, but not limited to, lactose, maltose, maltose, sucrose, lactulose and trehalose
- the sugar is sucrose. In an even more specific embodiment, the sucrose is between 5-15%.
- the rdCMV is stored in buffer comprising 25 mM
- a rdCMV described herein can be formulated and administered to a patient using the guidance provided herein along with techniques well known in the art.
- Guidelines for pharmaceutical administration in general are provided in, for example, Vaccines Eds. Plotkin and Orenstein, W.B. Sanders Company, 1999; Remington's Pharmaceutical Sciences 2(f h Edition, Ed. Gennaro, Mack Publishing, 2000; and Modern Pharmaceutics 2 nd Edition, Eds. Banker and Rhodes, Marcel Dekker, Inc., 1990.
- Vaccines can be administered by different routes such as subcutaneous, intramuscular, intravenous, mucosal, parenteral, transdermal or intradermal.
- Subcutaneous and intramuscular administration can be performed using, for example, needles or jet-injectors.
- the vaccine of the invention is administered intramuscularly.
- Transdermal or intradermal delivery can be accomplished through intradermal syringe needle injecton, or enabling devices such as micron-needles or micron array patches.
- compositions described herein may be administered in a manner compatible with the dosage formulation, and in such amount as is immunogenically-effective to treat and/or reduce the likelihood of CMV infection (including primary, recurrent and/or super).
- the dose administered to a patient should be sufficient to effect a beneficial response in a patient over time such as a reduction in the level of CMV infection, ameliorating the symptoms of disease associated with CMV infection and/or shortening the length and/or severity of CMV infection, or to reduce the likelihood of infection by CMV (including primary, recurrent and/or super).
- Suitable dosing regimens may be readily determined by those of skill in the art and are preferably determined taking into account factors well known in the art including age, weight, sex and medical condition of the patient; the route of administration; the desired effect; and the particular composition employed.
- the physician may evaluate circulating plasma levels of virus, progression of disease, and/or the production of anti-CMV antibodies.
- the dose for a vaccine composition consists of the range of 10 3 to 10 12 plaque forming units (pfu).
- the dosage range is from 10 4 to 10 10 pfu, 10 s to 10 9 pfu, 10 6 to 10 8 pfu, or any dose within these stated ranges.
- the amount of each vaccine agent is within their described ranges.
- the vaccine composition can be administered in a single dose or a multi-dose format.
- Vaccines can be prepared with adjuvant hours or days prior to administrations, subject to identification of stabilizing buffer(s) and suitable adjuvant composition.
- Vaccines can be administrated in volumes commonly practiced, ranging from 0.1 mL to 0.5 mL.
- the timing of doses depends upon factors well known in the art. After the initial administration one or more additional doses may be administered to maintain and/or boost antibody titers and T cell immunity. Additional boosts may be required to sustain the protective levels of immune responses, reflected in antibody titers and T cell immunity such as ELISPOT. The levels of such immune responses are subject of clinical investigations.
- each of the immunogens can be administered together in one composition or separately in different compositions.
- a rdCMV described herein is administered concurrently with one or more desired immunogens.
- the term “concurrently” is not limited to the administration of the therapeutic agents at exactly the same time, but rather it is meant that the rdCMV described herein and the other desired immunogen(s) are administered to a subject in a sequence and within a time interval such that the they can act together to provide an increased benefit than if they were administered otherwise.
- each therapeutic agent may be administered at the same time or sequentially in any order at different points in time; however, if not administered at the same time, they should be administered sufficiently close in time so as to provide the desired therapeutic effect.
- Each therapeutic agent can be administered separately, in any appropriate form and by any suitable route.
- a “patient” refers to a mammal capable of being infected with CMV.
- the patient is a human.
- a patient can be treated prophylactically or therapeutically.
- Prophylactic treatment provides sufficient protective immunity to reduce the likelihood or severity of a CMV infection, including primary infections, recurrent infections (i.e., those resulting from reactivation of latent CMV) and super-infections (i.e., those resulting from an infection with a different stain of CMV than previously experienced by the patient).
- Therapeutic treatment can be performed to reduce the severity of a CMV infection or decrease the likelihood/severity of a recurrent or super- infection.
- Treatment can be performed using a pharmaceutical composition comprising a rdCMV as described herein.
- Pharmaceutical compositions can be administered to the general population, especially to those persons at an increased risk of CMV infection (either primary, recurrent or super) or for whom CMV infection would be particularly problematic (such as immunocompromised individuals, transplant patients or pregnant women).
- CMV infection either primary, recurrent or super
- females of childbearing age, especially early adolescent females are vaccinated to decrease the likelihood of CMV infection (either primary, recurrent or super) during pregnancy.
- Those in need of treatment include those already with an infection, as well as those prone to have an infection or in which a reduction in the likelihood of infection is desired. Treatment can ameliorate the symptoms of disease associated with CMV infection and/or shorten the length and/or severity of CMV infection, including infection due to reactivation of latent CMV.
- Persons with an increased risk of CMV infection include patients with weakened immunity or patients facing therapy leading to a weakened immunity (e.g., undergoing chemotherapy or radiation therapy for cancer or taking
- weakened immunity refers to an immune system that is less capable of battling infections because of an immune response that is not properly functioning or is not functioning at the level of a normal healthy adult.
- patients with weakened immunity are patients that are infants, young children, elderly, pregnant or a patient with a disease that affects the function of the immune system such as HIV infection or AIDS.
- An infectious CMV bacterial artificial chromosome clone was constructed so that the encoded virion that expressed the pentameric gH complex consisting of UL128, UL130 and UL131 assembled onto a gH/gL scaffold.
- CMV strain AD 169 strain was originally isolated from the adenoids of a 7-year- old girl (Elek and Stern, 1974, Lancet, 1:1). The virus was passed 58 times in several types of human fibroblasts to attenuate the virus (Neff et al, 1979, Proc Soc Exp Biol Med, 160:32, with the last 5 passages in WI-38 human fibroblasts.
- This passaged variant of AD 169 virus referred in this study as Merck AD 169 (MAD 169), was used as the parental virus to construct the infectious BAC clone. Neither the parental virus AD 169 nor the passaged variant virus
- MAD 169 expressed UL131 or the pentameric gH complex.
- the MAD 169 was used as the parental virus to construct an infectious bacterial artificial chromosome (BAC) clone.
- a BAC vector is a molecular tool that allows the genetic manipulation of a large size DNA fragment, such as the CMV genome ( ⁇ 230Kb), in E. coli.
- a BAC element along with a GFP marker gene was inserted immediately after the stop codon of US28 open reading frame (between US28 and US29 ORFs in the viral genome) with a LoxP site created at the both ends of the fragment (FIG. 1 A). Briefly, a DNA fragment containing a GFP expression cassette flanked by two loxP sites and CMV US28-US29 sequences were synthesized and cloned into pBeloBACl 1 vector.
- the BAC vector was linearized with restriction enzyme Pme I, and cotransfected into MRC-5 cells with MAD 169 DNA extracted from purified virions.
- the recombinant variants identified by green fluorescence expression, were plaque purified.
- the circular form of viral genome was extracted from the infected cells, and electroporated into E. coli DH10 cells.
- the bacterial colonies were screened by PCR for the presence of US28 and US29 regions.
- Candidate clones were further examined by EcoR I, EcoR V, Hind III, Spe I and Bam HI restriction analyses. After screening, one clone, bMAD-GFP, showed identical restriction pattern with the parental MAD 169 virus.
- the frame-shift mutation in the first exon of UL131 underlying the epithelial tropism deficiency in MAD 169 was repaired genetically in E. coli (FIG. IB). Specifically, one adenine nucleotide (nt) from the 7 nt A-stretch in the UL131 gene was deleted (FIG. IB). Deletion of 1 nt was sufficient to rescue the epithelial and endothelial cell tropism due to UL131, and thus the pentameric gH complex, now being expressed. Expression was confirmed by ELISA and western blot (data not shown). This clone was further modified by removing the BAC segment by LoxP/Cre recombination.
- the BAC DNA was transfected in ARPE-19 cells, human retinal pigmented epithelial cells (ATCC Accession No. CRL-2302), to recover the infectious virus (FIG. 1C).
- the resultant infectious virus termed BAC-derived epithelial-tropic MAD169 virus (beMAD)
- beMAD BAC-derived epithelial-tropic MAD169 virus
- MAD169 virus differs from MAD169 only in two loci, (1) UL131 ORF where a single adenine nucleotide was deleted and (2) a 34bp LoxP site inserted between US28 and US29 ORFs (see Table 2).
- the genome of the BAC clone beMAD was completely sequenced.
- the overall genome structure of beMAD is identical to that reported in the ATCC AD 169 variant (GenBank Accession No. XI 7403), which is comprised of two unique regions, unique long (UL) and unique short (US). Each unique regions are bracketed by two repeat sequences, terminal repeat long (TRL)-internal repeat long (IRL), terminal repeat short (TRS)-internal repeat short (IRS).
- TRL terminal repeat long
- TRS terminal repeat short
- the growth kinetics of the passaged variant MAD 169 and the beMAD derived virus were indistinguishable in MRC-5 cells, a human fibroblast cell line (ATCC Accession No. CCL-171) (data not shown). Because the gH complex is not needed for growth on fibroblast cells, the differences in gH complex expression between the MAD 169 and beMAD are not relevant.
- the ⁇ -irradiation was performed on lyophilized virions.
- Recombinant CMV vaccine at a concentration of 0.15 mg/mL in HNS (25 mM Histidine, 150 mM NaCl, 9% w/v Sucrose, pH 6.0) formulation was lyophilized using a conservative lyophilization cycle (-50 °C freezing and primary drying at -35 °C for -30 hrs followed by secondary drying at 25 °C for 6 hrs) to obtain dry powder.
- the vaccine was lyophilized in a 3 mL glass vial with 0.5ml filled in each vial.
- the vials were stoppered in a nitrogen environment and the samples were removed, labelled, crimped and stored at -70°C until gamma irradiation.
- the vials were irradiated under a Co irradiator for the desired dosage of irradiation.
- BPL treatment For BPL treatment, a BPL stock solution was added to the crude viral culture supernatant from growth on ARPE-19 cells to reach the final concentrations of 0.01% or 0.1% (v/v). The reaction was terminated with sodium thiosulfate at various time points. The BPL- treated gH expressing CMV were then purified by ultracentrifugation.
- the inactivation kinetics for both methods were determined by plaque assay in ARPE-19 cells. Briefly, serial dilutions of viral samples in PBS were made and 0.1 mL was used to inoculate each well of a 6-well plate that had been seeded with ARPE-19 cells. The plates are incubated at 37°C for 1 hr before addition of a 6 mL per well overlay medium containing 0.5% agarose. The plates are incubated for 18 days at 37°C. To visualize the plaques, about 0.5 mL MTT solution at 5 mg/mL (Thiazolyl blue tetrazolium bromide, Sigma M5655) was added to each well. The plates were incubated at 37°C for 2-4 hr and the plaques were counted under lightbox. (FIGS. 2A and 2C).
- a CMV was constructed using the attenuated AD 169 strain backbone that regains its epithelial tropism while being conditionally replication defective. Methods described in Example 1 were used to restore epithelial tropism.
- the viral proteins to be fused to the FKBP derivative were selected based on two criteria. First, the proteins of interest were not detected in CMV virions by proteomics analysis (Varnum et al., 2004, J. Virol. 78:10960), thus, decreasing the likelihood that the FKBP fusion protein will be incorporated into virus. Second, the proteins of interest are essential for viral replication in tissue culture.
- the FKBP derivative (SEQ ID NO: 12) was fused to 12 essential viral proteins individually, including IE 1/2 (SEQ ID NO:l), pUL37xl, pUL44, pUL51 (SEQ ID NO:3), pUL52 (SEQ ID NO:5), pUL53, pUL56, pUL77, pUL79 (SEQ ID NO:7), pUL84 (SEQ ID NO:9), pUL87 and pUL105.
- IE 1/2 SEQ ID NO:l
- pUL37xl pUL44
- pUL51 SEQ ID NO:3
- pUL52 SEQ ID NO:5
- pUL53 pUL56
- pUL77 pUL77
- pUL79 SEQ ID NO:7
- pUL84 SEQ ID NO:9
- a virus with two different essential proteins fused to FKBP was also constructed that fused each of IE 1/2 and UL51 the FKBP derivative (the genome of the rdCMV with the destabilized IE 1/2 and UL51 is shown in SEQ ID NO: 14). After construction, all recombinant BAC DNAs were transfected into ARPE-19 cells, and cultured in the medium containing Shld-1.
- Varying concentrations of Shld-1 were used in additional experiments to further assess viral replication in the presence or absence of Shld-1.
- ARPE-19 cells were infected by the gH expressing CMV that also contained a FKBP derivative fused to an essential protein at MOI of 0.01 pfu ml. After infection for 1 hour, the cells were washed twice with fresh medium to remove the Shld-1 from the inoculums. The inoculums were then added to ARPE-19 cells cultured in medium containing 0.05, 0.1, 0.5 or 2 ⁇ of Shield-1. Seven days post infection, the cell-free progeny virus in the supernatant was collected and titrated on ARPE-19 cells supplemented with 2 mM of Shield-1.
- Virus titers were determined by a 50% Tissue Culture Infective Dose (TCID50) assay. Briefly, this dilution assay quantifies the amount of virus required to kill 50% of infected hosts. ARPE-19 cells were plated and serial dilutions of the virus were added. After incubation, the percentage of cell death (i.e. infected cells) was manually observed and recorded for each virus dilution. Results were used to mathematically calculate the TCID50.
- TCID50 Tissue Culture Infective Dose
- the growth kinetics of viruses with IE1/2, UL51, IE1/2-UL51 fusions were compared to the parental beMAD virus in the presence or absence of 2 ⁇ of Shld-1. As shown in FIG. 4, in the presence of Shld-1, the single or double fusions had growth kinetics comparable to the parental beMAD. However, in the absence of Shld-1, only the IEl/2 could replicate, albeit at a lower and slower rate than the parental beMAD.
- MRC-5 fibroblasts MRC-5 fibroblasts
- AoMCs aortic smooth muscle cells
- SKMCs and CCF-STTGl astrocytoma cells.
- the cells were infected by the IE1/2-UL51 fusion virus at MOI of 0.01 pfu/cell (except for CCF-STTGl which was infected with a MOI of 5 pfu/cell), and then incubated in the medium in the presence or absence of Shield- 1. All cell types were able to support lytic viral replication in the presence of Shield- 1. No virus production was detected in the absence of Shield- 1.
- the immunogenicity of the IE1/2-UL51 double fusion virus was evaluated in mice, rabbits and rhesus monkeys. Dose dependent neutralizing response against the IE1/2-UL51 double fusion virus or the parental beMAD virus in mice was first compared (FIG. 6A). Six- week-old female BALB/c mice were immunized at weeks 0 and 4 with beMAD or the IE 1/2- UL51 double fusion virus at doses ranging from 0.12 ⁇ g to 10 ⁇ g.
- Serum samples from week 6 were collected and analyzed by CMV micro-neutralization assay on ARPE-19 cells as described previously (Tang et al, Vaccine, "A novel throughput neutralization assay for supporting clinical evaluations of human cytomegalovirus vaccines" e-published August 30, 2011 at
- Formulations of 10 ⁇ g/dose vaccine with amorphous aluminum hydroxylphosphate sulfate (AAHS) or ISCOMATRDC® adjuvant were also included.
- a control group received recombinant gB at 30 ⁇ g dose formulated with MF59 adjuvant at weeks 0, 4 and 24.
- Geometric means for reciprocal NT50 titers (GMT) for all groups are presented longitudinally (FIG. 7). Prior to vaccination, there was no detectable neutralizing antibody titer >40 for any of the monkeys.
- ISCOMATRDC® adjuvant but not AAHS, provided adjuvanting benefit when compared with the 10 ⁇ g/dose group.
- the GMT at week 28 for the ISCOMATRDC® group measured 15,800 whereas the AAHS group was 3,000 and the 10 ⁇ g/dose group was 4,660. Minimal neutralizing activity was detected for the control (gB/MF59) group, with the peak GMT never exceeding 200.
- the GMT for the 100 ⁇ g/dose group and the ISCOMATRDC® formulation group were maintained at 1400 and 3000, respectively. At this time, the GMT for the 10 ⁇ g/dose group and the AAHS group was around 200.
- PBMC Peripheral blood mononuclear cells
- Monkeys were vaccinated with either 100 ⁇ g/dose (FIG. 8 A) or 10 (FIGS. 8B-8D) of the double fusion virus IE1/2-UL51. Additionally, the 10 ng/dose was formulated either with no adjuvant (FIG. 8B) or with AAHS (FIG. 8C) or ISCOMATRTX® (FIG. 8D) adjuvant.
- the antigens of pooled overlapping peptides representing five HCMV antigens were used to stimulate IFN- ⁇ production ex-vivo.
- the HCMV antigens used were IE1 and ⁇ 2 (both viral regulatory proteins) and pp65, gB and ppl 50 (predominant viral structural antigens). Quality of the T-cell responses was assessed by the magnitude (geometric means) of ELISPOT responses as well as the responder rate to viral antigens. Prior to vaccination, there was no antigen-specific ELISPOT titer in any monkey (data not shown).
- the geometric means for ELISPOT responses to the five HCMV antigens were 186, 132, 253, 87, 257 spot-forming cells (SFCyiO 6 PBMC for the 100 ⁇ g/dose group versus 21, 24, 107, 111, 33 SFC/10 6 PBMC for the 10 ⁇ g/dose group, respectively (FIGS. 8 A and 8B).
- a responder in each group was scored based on cutoff criteria of more than 55 SFC/10 6 PBMC and more than 3 -fold rise in antigen- specific response over dimethyl sulfoxide (DMSO) response.
- DMSO dimethyl sulfoxide
- the number of responders to the five HCMV antigens were 4, 4, 5, 1, 3 for the 100 ⁇ g/dose group versus 1, 1, 5, 4, 0 for the 10 ⁇ g/dose group.
- FIG. 8D The effect of ISCOMATRIX® adjuvant on T- cell responses to a 10 ⁇ g/dose of the double fusion virus IE1/2-UL51 is shown in FIG. 8D.
- Geometric means of ELISPOT responses to the five HCMV antigens i.e., IE1, IE2, pp65, gB and ppl50
- ISCOMATRIX® adjuvant were similar to those in the 100 ⁇ g/dose group.
- double fusion virus IE1/2-UL51 (based on total protein mass) with ISCOMATRIX® were further analyzed in intracellular cytokine staining after being stimulated with HCMV antigens (pp65, ⁇ 1, ⁇ 2 or whole HCMV virion).
- the negative control was one naive monkey not vaccinated with double fusion virus IE1/2-UL51 while the positive control was staphalococcus enterotoxin B (SEB).
- SEB staphalococcus enterotoxin B
- FIG. 9 shows that the negative control showed minimal responses to all antigen stimulations but responded to the positive control agent staphalococcus enterotoxin B (SEB) as expected. All ten vaccinated monkeys from both groups responded to HCMV-specific antigens with similar magnitude and patterns.
- double fusion virus IE1/2-UL51 with aluminum salts were compared for theor ability to generate neutralizing antibodies in rhesus macaques (FIG. 10).
- 30 double fusion virus IE1/2-UL51 was formulated with either HNS (base buffer), amorphous aluminum hydroxylphosphate sulfate (AAHS) or Merck Aluminum
- MAP A Phosphate Adjuvant
- the CMV virus in HBSS (Hank's Balanced Salt Solution) and stored at -70 °C until used was diluted ⁇ 10x with appropriate buffer.
- the sample was stored at -70 °C for at least 1 hour and thawed at RT for 30 minutes for either one or three cycles.
- the stability of the samples was tested on day 4 using a viral entry assay. Briefly, the assay was performed using several different sample dilutions to obtain a response curve and EC50 ⁇ g/mL) values were obtained from the viral entry assay results by non-linear curve fitting. Lower EC50 values represent better stability. EC50 values of the stability samples were compared against -70 °C frozen control sample.
- Viral entry assay measures the ability of CMV to infect ARPE-19 cells and express IE1 (immediate early protein 1).
- the assay is performed in transparent 96-well plates.
- the IE1 specific primary antibodies and biotinylated secondary antibodies are used to detect target proteins in fixed cells and fluorescent signal from each well is quantified using an IR Dye 800CW Streptavidin together with Sapphire 700/DRAQ5 (for cell input normalization).
- the results were plotted as 800/700 Integrated Intensity Ratio (Integ. Ratio) vs. CMV concentration (total protein, ⁇ g/mL).
- EC50 values were also obtained from the infectivity assay results using non-linear curve fitting. Since viral infection of ARPE-19 cells relies on integrity of viral glycoprotein antigens, in particular the pentameric gH complex, the EC50 values reflect how well the viral particles are preserved under these conditions.
- the CMV loses infectivity when stored for four days in HBSS at RT. Moreover, 3 cycles of freezing-thawing in HBSS lead to complete loss of infectivity when assessed by viral entry assay. Thus, HBSS was not an optimal buffer for CMV storage.
- the samples were prepared by dilution of the viral bulk 10 times with the appropriate buffer.
- the samples were stored at RT (25 °C) for 4 days. On day 4, the stability of the samples was measured by utilizing the viral entry assay.
- the CMV in HBSS stored frozen at -70 °C was treated as a control.
- the UV-Vis spectra for each of the samples were obtained at time 0 and on day 4 to examine the structural changes and aggregation that occurred during storage.
- 25 mM Histidine buffer at pH 6 provided better stability for CMV by retaining higher infectivity at RT compared to other pH tested.
- the second derivative of the UV-spectra indicated similar structural profile of the virus at all pHs (data not shown). No significant aggregation was observed at any of the pH tested as measured by optical density at 350 nm (data not shown).
- excipients sucrose, sorbitol, glycerol, and proline were screened for their effect on gH expressing CMV stability at room temperature.
- Exipients to be tested were added to CMV in 25 mm Histidine buffer, pH 6 at room temperature for 4 days before CMV virus stability was measured using a viral entry assay. EC 50 values were calculated for the samples.
- 150 mM NaCl alone or in combination with 9% w/v sucrose provided better stability at pH 6 (data not shown). Therefore, the recommended buffer for CMV storage at RT is 25 mM Histidine (pH 6) with 150 mM NaCl with or without 9% w/v sucrose.
- cryoprotectants The effect of cryoprotectants on CMV stability during freezing-thawing was investigated. As indicated previously (FIG. 11), CMV in HBSS completely lost its infectivity when subjected to three freezing-thawing cycles. Several cryoprotectants (including sucrose, sorbitol, glycerol) were screened for the ability to diminish the freeze-thaw stress on CMV. For each freeze-thawing cycle, the samples were frozen at -70 °C for at least 1 hour and thawed at RT for 30 minutes. The addition of cryoprotectants led to increased stability of the virus.
- cryoprotectants including sucrose, sorbitol, glycerol
- the recommended buffer composition for CMV storage at -70 °C or up to 3 freezing- thawing cycles is 25 mM Histidine, 150 mM NaCl and 9% sucrose (HNS buffer).
- HNS buffer was compared with HBSS buffer for protection of CMV stability during three freeze-thaw cycles, refrigeration (2-8 °C) and RT (25 °C).
- the HNS buffer provided better stability for CMV live virus at all the storage conditions tested (data not shown).
- the double fusion IE1/2-UL51 CMV virus stock was supplied in HNS buffer and stored at -70 °C until used.
- the stability study was performed at a concentration of 100 ⁇ g/mL (based on total protein content measured by Bradford assay).
- the bulk virus was diluted with HNS buffer to obtain the final virus concentration.
- the samples were then stored at appropriate temperatures and tested as described for up to 3 months. For freezing-thawing, the samples were frozen at -70 °C for at least 1 hour and thawed at room temperature for 30 minutes. The samples were pulled at different time points and kept stored frozen at -70 °C until analyzed.
- Particle size of the CMV in the samples over time was monitored by measuring the hydrodynamic diameter of the sample using DLS method. This method monitored any aggregation or disruption of the virus particles over time and at different storage temperatures. No real trending was observed with sporadic changes in the particle size of certain samples (data not shown). The results indicated that the virus particles were intact and not aggregated at elevated temperatures.
- mice were immunized with 2.5 ⁇ g per dose vaccine i.m. on day 0 and boosted on day 21 followed by bleeding on day 28.
- the mouse serum was tested for neutralizing antibodies against a gH expressing CMV using ARPE 19 cells and NT50 titers were obtained by non-linear curve fitting.
- the effect of storage at different temperatures for 3 months on the IE1/2-UL51 double fusion CMV immunogenicity was evaluated.
- the NT50 titer for formulations stored at -20 °C was lower by less than 2-fold, but the viral entry assay titers for these samples were significantly affected compared to -70 °C frozen control.
- the trending of NT50 titers for -20 °C, 2-8 °C and 25 °C stability samples follows the CMV mass ELISA titers obtained for these samples.
- the effect of storage at different temperatures for 8 hours after thawing on the IE1/2-UL51 double fusion CMV immunogenicity was evaluated.
- the NT50 titers of the formulations were compared to a -70 °C frozen control.
- the effect of the double fusion IE1/2-UL51 CMV storage at 25 °C for different time points after thawing the samples was evaluated in a mouse immunogenicity study.
- the NT50 titers of these formulations were compared to a -70 °C frozen control.
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RS20170715A RS56261B1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
KR1020147008959A KR101668163B1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
MEP-2017-157A ME02831B (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
UAA201403638A UA114896C2 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
MX2014002815A MX353037B (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv. |
LTEP12830346.8T LT2753364T (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
PL17171651T PL3251700T3 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
RU2014113921A RU2611198C2 (en) | 2011-09-09 | 2012-09-04 | Conditionally replicating cytomegalovirus as vaccine against cmv |
CN201280053360.7A CN103889462B (en) | 2011-09-09 | 2012-09-04 | Conditionality replication form cytomegalovirus as CMV vaccine |
ES12830346.8T ES2633190T3 (en) | 2011-09-09 | 2012-09-04 | A conditional replication cytomegalovirus as a vaccine for CMV |
BR112014005404A BR112014005404A8 (en) | 2011-09-09 | 2012-09-04 | CYTOMEGALOVIRUS (CMV) CONDITIONAL REPLICATION DEFECTIVE, COMPOSITION, USE OF THE COMPOSITION, METHOD FOR PREPARING CONDITIONAL REPLICATION DEFECTIVE CMV, AND, USE OF CONDITIONAL REPLICATION DEFECTIVE CMV |
SG11201400419YA SG11201400419YA (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
CA2846870A CA2846870C (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
US14/343,637 US9546355B2 (en) | 2011-09-09 | 2012-09-04 | Conditional replicating cytomegalovirus as a vaccine for CMV |
EP19175776.4A EP3572096A1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
AU2012304783A AU2012304783B2 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for CMV |
JP2014529788A JP5926804B2 (en) | 2011-09-09 | 2012-09-04 | Conditional replication cytomegalovirus as a vaccine for CMV |
EP17171651.7A EP3251700B1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
EP12830346.8A EP2753364B1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
IN1809CHN2014 IN2014CN01809A (en) | 2011-09-09 | 2012-09-04 | |
DK12830346.8T DK2753364T3 (en) | 2011-09-09 | 2012-09-04 | CONDITIONING REPLYING CYTOMEGALOVIRUS AS VACCINE AGAINST CMV |
NZ622156A NZ622156A (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
SI201231003T SI2753364T1 (en) | 2011-09-09 | 2012-09-04 | A conditional replicating cytomegalovirus as a vaccine for cmv |
IL231272A IL231272B (en) | 2011-09-09 | 2014-03-02 | A conditional replicating cytomegalovirus as a vaccine for cmv |
ZA2014/01708A ZA201401708B (en) | 2011-09-09 | 2014-03-07 | A conditional replicating cytomegalovirus as a vaccine for cmv |
CY20171100780T CY1119107T1 (en) | 2011-09-09 | 2017-07-20 | POSSIBLE COPYRIGHT COPYRIGHT AS A VACCINE FOR CMV |
HRP20171120TT HRP20171120T1 (en) | 2011-09-09 | 2017-07-20 | A conditional replicating cytomegalovirus as a vaccine for cmv |
CY20191100836T CY1121863T1 (en) | 2011-09-09 | 2019-08-06 | POTENTIALLY REPLICATIVE CYTOMEGALOYA AS A VACCINE FOR CMV |
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WO2016011293A1 (en) | 2014-07-16 | 2016-01-21 | Oregon Health & Science University | Human cytomegalovirus comprising exogenous antigens |
EP3008087A4 (en) * | 2013-06-10 | 2017-03-01 | Merck Sharp & Dohme Corp. | Cmv neutralizing antigen binding proteins |
US10064935B2 (en) | 2015-10-22 | 2018-09-04 | Modernatx, Inc. | Human cytomegalovirus RNA vaccines |
US10611800B2 (en) | 2016-03-11 | 2020-04-07 | Pfizer Inc. | Human cytomegalovirus gB polypeptide |
US10695419B2 (en) | 2016-10-21 | 2020-06-30 | Modernatx, Inc. | Human cytomegalovirus vaccine |
US11406703B2 (en) | 2020-08-25 | 2022-08-09 | Modernatx, Inc. | Human cytomegalovirus vaccine |
US11629172B2 (en) | 2018-12-21 | 2023-04-18 | Pfizer Inc. | Human cytomegalovirus gB polypeptide |
RU2800361C2 (en) * | 2017-11-01 | 2023-07-20 | МЕРК ШАРП И ДОУМ ЭлЭлСи | Stable compositions of cytomegalovirus |
US11857622B2 (en) | 2020-06-21 | 2024-01-02 | Pfizer Inc. | Human cytomegalovirus GB polypeptide |
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EP3048114A1 (en) * | 2015-01-22 | 2016-07-27 | Novartis AG | Cytomegalovirus antigens and uses thereof |
EP3443001A4 (en) | 2016-04-11 | 2020-04-29 | Obsidian Therapeutics, Inc. | Regulated biocircuit systems |
JP7130744B2 (en) * | 2017-11-01 | 2022-09-05 | メルク・シャープ・アンド・ドーム・コーポレーション | Stable formulation of cytomegalovirus |
US12060583B2 (en) | 2018-04-24 | 2024-08-13 | Merck Sharp & Dohme Llc | Scalable chromatography process for purification of human cytomegalovirus |
EP3905880B1 (en) | 2019-01-03 | 2024-06-12 | Merck Sharp & Dohme LLC | Supplemented serum-containing culture medium for enhanced arpe-19 growth and human cytomegalovirus vaccine production |
WO2021008840A1 (en) * | 2019-07-12 | 2021-01-21 | Københavns Universitet | Fusion toxin proteins for treatment of diseases related to cmv infections |
CN112481222B (en) * | 2020-11-30 | 2024-01-02 | 中国医学科学院医学生物学研究所 | Conditionally replicating recombinant herpes simplex virus, vaccine and application thereof |
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US9868777B2 (en) | 2013-06-10 | 2018-01-16 | Merck Sharp & Dohme Corp. | CMV neutralizing antigen binding proteins |
WO2016011293A1 (en) | 2014-07-16 | 2016-01-21 | Oregon Health & Science University | Human cytomegalovirus comprising exogenous antigens |
US11692012B2 (en) | 2014-07-16 | 2023-07-04 | Oregon Health & Science University | Human cytomegalovirus comprising exogenous antigens |
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