WO2013013118A1 - Method to increase the infectivity of virus particles - Google Patents

Method to increase the infectivity of virus particles Download PDF

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WO2013013118A1
WO2013013118A1 PCT/US2012/047534 US2012047534W WO2013013118A1 WO 2013013118 A1 WO2013013118 A1 WO 2013013118A1 US 2012047534 W US2012047534 W US 2012047534W WO 2013013118 A1 WO2013013118 A1 WO 2013013118A1
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virus
compound
cell
cholesterol
lrpl
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Thomas Shenk
Nicole GUDLESKI
Todd GRECO
Ileana CRISTEA
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Princeton University
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Princeton University
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    • C12Q1/70Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
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    • C12Q1/705Specific hybridization probes for herpetoviridae, e.g. herpes simplex, varicella zoster
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/12Viral antigens
    • A61K39/245Herpetoviridae, e.g. herpes simplex virus
    • A61K39/25Varicella-zoster virus
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/16011Herpesviridae
    • C12N2710/16111Cytomegalovirus, e.g. human herpesvirus 5
    • C12N2710/16151Methods of production or purification of viral material

Definitions

  • a method for enhancing the infectivity of HCMV virus particles is described.
  • the method of the disclosure is useful to increase infectivity of HCMV particles in a "live" virus preparation, and in particular, a vaccine, providing a manufacturing advantage over methods known in the art.
  • a method for production of virus particles in a virus- infected host cell comprising the step of contacting the cell with a compound that induces the production of virus particles with increased infectivity, wherein the progeny virus particles produced in the cell in the presence of the compound display increased ability to successfully initiate infection of cells compared to virus particles produced in the cells in the absence of the compound.
  • Production of virus is measured, in various aspects, by (i) the number of infectious virus particles, (ii) the number of virus particles, infectious and non-infectious, (iii) an amount of a specific viral antigen, and/or (iv) combinations of (i)-(iii).
  • a method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that decreases activity of low density lipoprotein related receptor 1 (LRPl), wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound.
  • LRPl low density lipoprotein related receptor 1
  • the compound decreases LRPl binding activity
  • the compound binds LRPl and blocks LRPl binding activity
  • the compound is a blocking antibody
  • the compound is an extracellular fragment of LRPl.
  • the compound decreases transcription and/or translation of a polynucleotide encoding LRPl, the compound decreases surface expression of LRPl, the compound decreases mobilization of LRPl to a cell membrane, and/or the compound induces an inactive conformation of LRPl at a cell membrane.
  • LRPl is also known as alpha-2-macroglobulin receptor (A2MR), apolipoprotein E receptor (APOER) or cluster of differentiation 91 (CD91).
  • LRPl has been shown to interact with, at least, apolipoprotein E, lipoprotein lipase, urokinase receptor, MAPK8IP2, tissue plasminogen activator, thrombospondin 1, SYNJ2BP, DLG4, NOS1AP, calreticulin, APBB1, ITGB1BP1, MAPK8IP1, GIPCl and SHC1. Accordingly, LRPl binding activity includes interaction with one or more of these proteins and any other LRPl binding partner.
  • a method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that increases intracellular cholesterol, wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound.
  • the compound increases cholesterol import into a cell, decreases cholesterol export from a cell, or both.
  • the compound modulates LDL-cholesterol receptor (LDLR) activity, the compound modulates ABCA1 activity, the compound is cholesterol, a cholesterol derivative or a cholesterol ester at an amount effective to increase intracellular levels of cholesterol.
  • LDLR LDL-cholesterol receptor
  • the compound decreases LRPl activity, the compound decreases LRPl binding activity, the compound binds LRPl and blocks LRPl binding activity, the compound is a blocking antibody, the compound is an extracellular fragment of LRP1, the compound decreases transcription and/or translation of a polynucleotide encoding LRP1, and/or the compound decreases surface expression of LRP1.
  • the cholesterol, cholesterol derivative, or cholesterol ester is present at a concentration of at least 5 ⁇ , at least 10 ⁇ , at least 15 ⁇ , at least 20 ⁇ , at least 25 ⁇ , at least 30 ⁇ , at least 35 ⁇ , at least 40 ⁇ , at least 45 ⁇ , at least 50 ⁇ , at least 55 ⁇ , at least 60 ⁇ , at least 65 ⁇ , at least 70 ⁇ , at least 75 ⁇ , at least 80 ⁇ , at least 85 ⁇ , at least 90 ⁇ , at least 95 ⁇ , at least 100 ⁇ , at least 110 ⁇ , at least 120 ⁇ , at least 130 ⁇ , at least 140 ⁇ , at least 150 ⁇ or more but at a concentration that is not toxic to the host cell.
  • the method utilizes cholesterol that is present at a concentration of no more than 5 ⁇ , no more than 10 ⁇ , no more than 15 ⁇ , no more than 20 ⁇ , no more than 25 ⁇ , no more than 30 ⁇ , no more than 35 ⁇ , no more than 40 ⁇ , no more than 45 ⁇ , no more than 50 ⁇ , no more than 55 ⁇ , no more than 60 ⁇ , no more than 65 ⁇ , no more than 70 ⁇ , no more than 75 ⁇ , no more than 80 ⁇ , no more than 85 ⁇ , no more than 90 ⁇ , no more than 95 ⁇ , no more than 100 ⁇ , no more than 110 ⁇ , no more than 120 ⁇ , no more than 130 ⁇ , no more than 140 ⁇ , or no more than 150 ⁇ .
  • the cell is contacted with the compound prior to virus infection, the cell is contacted with the compound after virus infection or the cell is contacted with the compound concurrently with virus infection.
  • the virus is an enveloped virus
  • the virus is an enveloped DNA virus or an enveloped RNA virus
  • the virus is a herpes virus
  • the virus is an alpha family herpes virus
  • the virus is a beta family herpes virus
  • the virus is an gamma family herpes virus
  • the virus is CMV
  • the virus is a pox virus, a non-envelope picorna virus, an RNA virus influenza virus, herpes simplex virus, Epstein Barr virus, hepatitis C virus, Dengue virus, HIV, mumps virus, measles virus, and/or parainfluenza virus.
  • the cell is a eukaryotic cell, the cell is a mammalian cell or the cell is a human cell.
  • the method optionally further comprises the step of isolating the virus from medium of cell growth. In various aspects, the method further comprises the step of isolating the virus from the host cell.
  • the method optionally, comprises the step of infecting the host cells with the virus.
  • the host cell is infected at a multiplicity of infection (MOI), including e.g. and without limitation, 0.0001, 0.001, 0.01, 0.1, 1.0, 3, 5, 10 or more infectious units per cell.
  • MOI multiplicity of infection
  • the method optionally further comprises the step of growing the host cells to confluence, to about 90% , about 80% confluence, about 70% confluence, about 60% confluence, about 50% confluence, or less than 50% confluence prior to infecting the host cells with the virus.
  • the method optionally further comprises the step of culturing the host cells after infecting the host cells with the virus.
  • the method optionally further comprises the step of adding or changing medium of growth for the host cells prior to isolating the virus.
  • the method optionally further comprises the step of incubating the host cells with an infecting virus for an adsorption period.
  • Fig. Strategy to identify PM protein alterations in HCMV-infected cells.
  • Fig. 2 LRP1 levels are induced after infection, and LRP1 modulates the production of HCMV progeny.
  • Fig. 5 Cholesterol content in virus particles regulates virus infectivity.
  • MRC5 fibroblasts were mock infected or infected with HCMV strain AD 169 at a multiplicity of 5 pfu/cell. After 6, 24, or 72 hours, cell surface proteins were biotinylated, lysed in detergents and sonicated. Biotinylated proteins were bound to an avidin matrix, and samples were eluted with DTT. Filter-aided sample preparation (FASP) was used to concentrate the sample, remove detergents, and unfold the proteins. Isolated proteins were digested with trypsin, and peptides were analyzed by mass spectrometry (MS).
  • FASP Filter-aided sample preparation
  • results from mass spectrometry analysis identified multiple PM proteins whose levels changed after infection.
  • One of proteins was the low density lipoprotein related receptor 1 - LRP1, for recent reviews of LRP1 function see (Lillis, Van Duyn et al. 2008; Boucher and Herz 2010; Gaultier, Simon et al. 2010).
  • Fibroblasts were mock infected or infected at a multiplicity of 5 pfu/cell with HCMV strain AD 169, and the level of LRP1 in whole cell extracts (WCL) and plasma membrane (PM) were determined by western blot at 6, 12, 24, 48 and 72 hours later, ⁇ -actin and insulin receptor (IR) levels were assayed as controls.
  • WCL whole cell extracts
  • PM plasma membrane
  • Results from the western blot analysis confirmed that total cellular and PM- associated LRP1 was elevated at 6, 24 and 48 hours after infection (Fig. 2A). [0030] Since protein level changed, the possibility that LRPl performs an important function during HCMV infection was tested using siRNA knockdown to reduce protein level or a blocking/neutralizing antibody to decrease protein activity.
  • fibroblasts were infected at a multiplicity of 0.1 PFU/cell with HCMV strain AD 169. 96 hours later, virus in culture medium was quantified by TCID 50 assay.
  • IE2-specific siRNA served as a positive control; scrambled (Scr) and GFP-specific siRNAs served as negative controls; tubulin- specific antibody served as a negative control. ** P ⁇ 0.001 (t-test, compared to scrambled siRNA or tubulin antibody).
  • Particle to PFU ratios were calculated for partially purified virions by dividing the amount of DNA in virus particles (quantified by qPCR with UL123-specific primers) by the virus titer (quantified by TCID 50 ). Error bars represent the standard errors of the means from two independent experiments, each performed in triplicate. ** P ⁇ 0.001 (t-test). [0037] The particle/PFU ratio decreased by a factor of about 10 (Fig. 3B), demonstrating that viral particles are more infectious when made in cells with reduced LRPl activity.
  • LRPl has been shown to prevent intracellular accumulation of free cholesterol and cholesterol esters by stimulating a Wnt5a signaling pathway (Terrand, Bruban et al. 2009). In order to determine whether the change in LRPl activity seen with virus infection alters cellular cholesterol, the following experiment was carried out.
  • MRC5 fibroblasts were left untreated, transfected with siRNAs (LRPl or scrambled control), or treated with antibodies (LRPl or tubulin), then left uninfected or infected with HCMV strain AD169 at a multiplicity of 0.1 or 5 pfu/cell.
  • the cholesterol content of MRC5 cells was quantified using the amplex red (Invitrogen) specrofluorometric assay. Total cholesterol corresponds to free + esterified cholesterol per 100,000 MRC5 cells.
  • Results demonstrated that cellular cholesterol levels were increased by treatment of infected cells with LRPl-specific siRNA or LRPl antibody (Fig. 4A and B).
  • MRC5 cells were left untreated, treated with Mevastatin or mock treated. At 90 minutes post Mevastatin treatment, cells were treated with antibody to LRPl or tubulin or left untreated. Ihour post Mevastatin treatment, cells were infected at a multiplicity of 0.1 PFU/cell. At 96 hpi, released virus was used to infect new cells.
  • Results showed that intracellular cholesterol levels influenced the production of HCMV infectivity in two ways.
  • Mevastatin reversed the increased infectivity caused by inhibition of LRP1 activity to a limited extent and cholesterol supplementation demonstrated that LRP1 had little effect in the absence of extracellular cholesterol.
  • cholesterol import is at least partly responsible for increased infectivity produced when LRP1 function is antagonized.
  • MCpD methyl- ⁇ - cyclodextrin
  • Results showed that incubation of virus particles with MCpD resulted in a dose-dependent inhibition of HCMV infectivity (Fig. 5 A, left).
  • Results showed that incubation with cholesterol partially restored HCMV infectivity (Fig. 5B, left) and envelope cholesterol (Fig. 5B, right) content in a dose-dependent manner.
  • Results show that incubation with cholesterol increased virus infectivity (Fig. 5C, left) and overall cholesterol content (Fig. 5C, right) in a dose dependent manner
  • HCMV particles either treated with MCpD or left untreated, were bound to cells at 4°C, then incubated in a low pH buffer (pH 4.7) to artificially induce the fusion event, thus allowing fusion-deficient viruses to enter the cell and replicate.
  • a neutral pH buffer was used as a control.
  • Virus replication after acid bypass was visualized by IE1 expression at 24 hpi (Fig. 6).
  • Results showed that acid bypass of the fusion event caused a dramatic difference in the ability of MCpD-treated viruses to enter the cell and express IE1 protein. These data demonstrate that the level of envelope cholesterol is important for HCMV fusion with host cells.
  • LDL Receptor-Related Protein 1 Regulates the Abundance of Diverse Cell-Signaling Proteins in the Plasma Membrane Proteome.
  • LDL receptor-related protein 1 unique tissue-specific functions revealed by selective gene knockout studies. Physiol Rev. 88(3): 887-918.
  • Vaccinia virus uses macropinocytosis and apoptotic mimicry to enter host cells.” Science. 320(5875): 531-535.
  • Low density lipoprotein receptor-related protein is a calreticulin coreceptor that signals focal adhesion disassembly. J Cell Biol 161(6): 1179-1189.
  • LRP1 regulates architecture of the vascular wall by controlling PDGFRbeta-dependent phosphatidylinositol 3-kinase activation.

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Abstract

A method for enhancing infectivity of HCMV virus particles is provided.

Description

METHOD TO INCREASE THE INFECTIVITY OF VIRUS PARTICLES
CROSS-REFERENCE TO RELATED APPLICATION
[0001] This application claims priority of U.S. Provisional Patent Application No.
61/510,298, filed July 23, 2011, the disclosure of which is incorporated herein by reference in its entirety.
[0002] This invention was made with government support under grant numbers CA82396 and DP1DA026192 awarded by the National Institutes of Health. The government has certain rights in the invention.
BACKGROUND
[0003] Since the ability to obtain adequate yields of infectious virus can limit vaccine manufacturing, improved methods of virus production are always needed to meet an important industrial and medical need. Previous work (Munger et al., PLoS Pathog 2:el32, 2006; Munger et al., Nat Biotech 26: 1179-86, 2008)) has demonstrated that human cytomegalovirus (HCMV) induces the synthesis of fatty acids, and, importantly, that the virus requires the de novo synthesis of fatty acids to generate an optimal yield of infectious progeny. Despite this understanding, US Patent No. 5,360,736 discloses that the addition of lipids during growth of certain viruses, and in particular after initiation of infection of the cultured cells, inhibits virus production.
[0004] Preparation of stock virus is necessary for development of therapeutic methods and materials. Accordingly, improved methods for virus production are useful for improving the yield of infectious virus, and more specifically for vaccine production.
DESCRIPTION OF THE INVENTION
[0005] A method for enhancing the infectivity of HCMV virus particles is described. The method of the disclosure is useful to increase infectivity of HCMV particles in a "live" virus preparation, and in particular, a vaccine, providing a manufacturing advantage over methods known in the art. In general, a method is provided for production of virus particles in a virus- infected host cell comprising the step of contacting the cell with a compound that induces the production of virus particles with increased infectivity, wherein the progeny virus particles produced in the cell in the presence of the compound display increased ability to successfully initiate infection of cells compared to virus particles produced in the cells in the absence of the compound. It will be readily apparent that each aspect of each embodiment of the method described herein is embraced and attaches to this general method. Production of virus is measured, in various aspects, by (i) the number of infectious virus particles, (ii) the number of virus particles, infectious and non-infectious, (iii) an amount of a specific viral antigen, and/or (iv) combinations of (i)-(iii).
[0006] In one embodiment, a method is provided for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that decreases activity of low density lipoprotein related receptor 1 (LRPl), wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound. In various aspects, the compound decreases LRPl binding activity, the compound binds LRPl and blocks LRPl binding activity, the compound is a blocking antibody, and/or the compound is an extracellular fragment of LRPl. In various aspects, the compound decreases transcription and/or translation of a polynucleotide encoding LRPl, the compound decreases surface expression of LRPl, the compound decreases mobilization of LRPl to a cell membrane, and/or the compound induces an inactive conformation of LRPl at a cell membrane. LRPl is also known as alpha-2-macroglobulin receptor (A2MR), apolipoprotein E receptor (APOER) or cluster of differentiation 91 (CD91). LRPl has been shown to interact with, at least, apolipoprotein E, lipoprotein lipase, urokinase receptor, MAPK8IP2, tissue plasminogen activator, thrombospondin 1, SYNJ2BP, DLG4, NOS1AP, calreticulin, APBB1, ITGB1BP1, MAPK8IP1, GIPCl and SHC1. Accordingly, LRPl binding activity includes interaction with one or more of these proteins and any other LRPl binding partner.
[0007] Also provided is a method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that increases intracellular cholesterol, wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound. In various aspects, the compound increases cholesterol import into a cell, decreases cholesterol export from a cell, or both. In various aspects of the method, the compound modulates LDL-cholesterol receptor (LDLR) activity, the compound modulates ABCA1 activity, the compound is cholesterol, a cholesterol derivative or a cholesterol ester at an amount effective to increase intracellular levels of cholesterol. In various aspects, the compound decreases LRPl activity, the compound decreases LRPl binding activity, the compound binds LRPl and blocks LRPl binding activity, the compound is a blocking antibody, the compound is an extracellular fragment of LRP1, the compound decreases transcription and/or translation of a polynucleotide encoding LRP1, and/or the compound decreases surface expression of LRP1. In aspects utilizing cholesterol, a cholesterol derivative, or a cholesterol ester, the cholesterol, cholesterol derivative, or cholesterol ester is present at a concentration of at least 5 μΜ, at least 10 μΜ, at least 15 μΜ, at least 20 μΜ, at least 25μΜ, at least 30 μΜ, at least 35 μΜ, at least 40 μΜ, at least 45 μΜ, at least 50 μΜ, at least 55 μΜ, at least 60 μΜ, at least 65 μΜ, at least 70 μΜ, at least 75 μΜ, at least 80 μΜ, at least 85μΜ, at least 90 μΜ, at least 95 μΜ, at least 100 μΜ, at least 110 μΜ, at least 120 μΜ, at least 130 μΜ, at least 140 μΜ, at least 150 μΜ or more but at a concentration that is not toxic to the host cell. In various aspects, the method utilizes cholesterol that is present at a concentration of no more than 5 μΜ, no more than 10 μΜ, no more than 15 μΜ, no more than 20 μΜ, no more than 25μΜ, no more than 30 μΜ, no more than 35 μΜ, no more than 40 μΜ, no more than 45 μΜ, no more than 50 μΜ, no more than 55 μΜ, no more than 60 μΜ, no more than 65 μΜ, no more than 70 μΜ, no more than 75 μΜ, no more than 80 μΜ, no more than 85μΜ, no more than 90 μΜ, no more than 95 μΜ, no more than 100 μΜ, no more than 110 μΜ, no more than 120 μΜ, no more than 130 μΜ, no more than 140 μΜ, or no more than 150 μΜ.
[0008] In various aspects of each embodiment of the method provided, the cell is contacted with the compound prior to virus infection, the cell is contacted with the compound after virus infection or the cell is contacted with the compound concurrently with virus infection.
[0009] In various aspects of each embodiment of the method, the virus is an enveloped virus, the virus is an enveloped DNA virus or an enveloped RNA virus, the virus is a herpes virus, the virus is an alpha family herpes virus, the virus is a beta family herpes virus, the virus is an gamma family herpes virus, the virus is CMV, and/or the virus is a pox virus, a non-envelope picorna virus, an RNA virus influenza virus, herpes simplex virus, Epstein Barr virus, hepatitis C virus, Dengue virus, HIV, mumps virus, measles virus, and/or parainfluenza virus.
[0010] In various aspects of each embodiment of the method, the cell is a eukaryotic cell, the cell is a mammalian cell or the cell is a human cell.
[0011] In each embodiment of the method provided, in various aspects, the method optionally further comprises the step of isolating the virus from medium of cell growth. In various aspects, the method further comprises the step of isolating the virus from the host cell.
[0012] In each embodiment of the method provided, in various aspects, the method optionally, comprises the step of infecting the host cells with the virus. In various aspects, the host cell is infected at a multiplicity of infection (MOI), including e.g. and without limitation, 0.0001, 0.001, 0.01, 0.1, 1.0, 3, 5, 10 or more infectious units per cell.
[0013] In each embodiment of the method provided, in various aspects, the method optionally further comprises the step of growing the host cells to confluence, to about 90% , about 80% confluence, about 70% confluence, about 60% confluence, about 50% confluence, or less than 50% confluence prior to infecting the host cells with the virus.
[0014] In each embodiment of the method provided, in various aspects, the method optionally further comprises the step of culturing the host cells after infecting the host cells with the virus.
[0015] In each embodiment of the method provided, in various aspects, the method optionally further comprises the step of adding or changing medium of growth for the host cells prior to isolating the virus.
[0016] In each embodiment of the method provided, in various aspects, the method optionally further comprises the step of incubating the host cells with an infecting virus for an adsorption period.
DESCRIPTION OF THE DRAWINGS
[0017] Fig. 1. Strategy to identify PM protein alterations in HCMV-infected cells.
[0018] Fig. 2. LRP1 levels are induced after infection, and LRP1 modulates the production of HCMV progeny.
[0019] Fig. 3. LRP1 knockdown has little effect on the accumulation viral proteins and DNA, but causes a dramatic increase in virion infectivity.
[0020] Fig. 4. Cholesterol content is increased in LRP1 knockdown cells via increased cholesterol import, not de novo synthesis.
[0021] Fig. 5. Cholesterol content in virus particles regulates virus infectivity.
[0022] Fig. 6. Infectivity of cholesterol-depleted virus can be restored by circumventing the fusion step. EXAMPLES
[0023] The invention is further described in the following examples. The examples serve only to illustrate the invention and are not intended to limit the scope of the invention in any way.
Example 1
[0024] The majority of disease biomarkers and drug targets are membrane proteins, and previous studies have demonstrated changes occur at the surface of virus-infected cells.
[0025] Consequently, an experiment was performed to identify changes in cellular plasma membrane (PM) protein expression following virus infection. The PM proteome of uninfected fibroblasts was compared to that of HCMV-infected fibroblasts using mass spectrometry (MS) analysis of affinity purified PM proteins. The experimental design is outlined in Figure 1.
[0026] In short, MRC5 fibroblasts were mock infected or infected with HCMV strain AD 169 at a multiplicity of 5 pfu/cell. After 6, 24, or 72 hours, cell surface proteins were biotinylated, lysed in detergents and sonicated. Biotinylated proteins were bound to an avidin matrix, and samples were eluted with DTT. Filter-aided sample preparation (FASP) was used to concentrate the sample, remove detergents, and unfold the proteins. Isolated proteins were digested with trypsin, and peptides were analyzed by mass spectrometry (MS).
[0027] Results from mass spectrometry analysis identified multiple PM proteins whose levels changed after infection. One of proteins was the low density lipoprotein related receptor 1 - LRP1, for recent reviews of LRP1 function see (Lillis, Van Duyn et al. 2008; Boucher and Herz 2010; Gaultier, Simon et al. 2010).
Example 2
[0028] Western blot analysis was then carried out to confirm these initial results.
Fibroblasts were mock infected or infected at a multiplicity of 5 pfu/cell with HCMV strain AD 169, and the level of LRP1 in whole cell extracts (WCL) and plasma membrane (PM) were determined by western blot at 6, 12, 24, 48 and 72 hours later, β-actin and insulin receptor (IR) levels were assayed as controls.
[0029] Results from the western blot analysis confirmed that total cellular and PM- associated LRP1 was elevated at 6, 24 and 48 hours after infection (Fig. 2A). [0030] Since protein level changed, the possibility that LRPl performs an important function during HCMV infection was tested using siRNA knockdown to reduce protein level or a blocking/neutralizing antibody to decrease protein activity.
[0031] At 24 hours after siRNA transfection or 1 hour after antibody treatment, fibroblasts were infected at a multiplicity of 0.1 PFU/cell with HCMV strain AD 169. 96 hours later, virus in culture medium was quantified by TCID50 assay. IE2-specific siRNA served as a positive control; scrambled (Scr) and GFP-specific siRNAs served as negative controls; tubulin- specific antibody served as a negative control. ** P<0.001 (t-test, compared to scrambled siRNA or tubulin antibody).
[0032] Knockdown of LRPl protein levels with siRNA increased the production of HCMV by more than a factor of 10 (Fig. 2B), and a similar increase was observed when LRPl antibody (Orr, Pedraza et al. 2003) was used to neutralize LRPl activity (Fig. 2C). Error bars represent the standard errors of the means from three independent experiments, each performed in triplicate. These experiments demonstrate that LRPl restricts or inhibits the production of HCMV infectivity, and infectivity can be increased if the level of LRPl protein or its activity is reduced.
Example 3
[0033] In order to determine whether the observed change in infectivity of the virus results from a change in actual virus particle number, the following experiment was carried out.
[0034] LRPl -specific siRNA-treated fibroblasts were infected with HCMV strain AD 169 at a multiplicity of 5 PFU/cell. Cells were harvested at the indicated times, and the accumulation of IE1 (HCMV immediate-early protein), pUL44 (HCMV early protein), pUL99 (HCMV late protein), β-actin (loading control), and LRPl were analyzed by Western blot. hpi=hours post infection.
[0035] Under conditions where the production of HCMV infectivity was enhanced by siRNA-mediated knockdown of LRPl, little difference was observed in the accumulation of a representative immediate-early (IE1), early (pUL44) or late (pUL99) viral protein (Fig. 3A).
[0036] Particle to PFU ratios were calculated for partially purified virions by dividing the amount of DNA in virus particles (quantified by qPCR with UL123-specific primers) by the virus titer (quantified by TCID50). Error bars represent the standard errors of the means from two independent experiments, each performed in triplicate. ** P<0.001 (t-test). [0037] The particle/PFU ratio decreased by a factor of about 10 (Fig. 3B), demonstrating that viral particles are more infectious when made in cells with reduced LRPl activity.
Example 4
[0038] LRPl has been shown to prevent intracellular accumulation of free cholesterol and cholesterol esters by stimulating a Wnt5a signaling pathway (Terrand, Bruban et al. 2009). In order to determine whether the change in LRPl activity seen with virus infection alters cellular cholesterol, the following experiment was carried out.
[0039] MRC5 fibroblasts were left untreated, transfected with siRNAs (LRPl or scrambled control), or treated with antibodies (LRPl or tubulin), then left uninfected or infected with HCMV strain AD169 at a multiplicity of 0.1 or 5 pfu/cell. At 24 (A) or 96 (B) hpi, the cholesterol content of MRC5 cells was quantified using the amplex red (Invitrogen) specrofluorometric assay. Total cholesterol corresponds to free + esterified cholesterol per 100,000 MRC5 cells.
[0040] Results demonstrated that cellular cholesterol levels were increased by treatment of infected cells with LRPl-specific siRNA or LRPl antibody (Fig. 4A and B).
[0041] In order to assess the mechanism by which cellular cholesterol changes, the following experiments were carried out.
[0042] In a first experiment, MRC5 cells were left untreated, treated with Mevastatin or mock treated. At 90 minutes post Mevastatin treatment, cells were treated with antibody to LRPl or tubulin or left untreated. Ihour post Mevastatin treatment, cells were infected at a multiplicity of 0.1 PFU/cell. At 96 hpi, released virus was used to infect new cells.
[0043] In a second experiment, cells were serum starved for 48 hours then treated with indicated antibodies. 1 hour post antibody treatment, serum- starved, confluent MRC5 cells were treated with various concentrations of cholesterol (+ fatty acid-free BSA carrier) for 1 hour then infected at a multiplicity of 0.1 PFU/cell. At 96 hpi, released virus was used to infect new cells. "N" indicates no added cholesterol. Cell-free virus was quantified by a TCID50 assay. Data represents the mean and standard deviation from three independent experiments with three replicates each.
[0044] Results showed that intracellular cholesterol levels influenced the production of HCMV infectivity in two ways. First, cells were treated with Mevastatin to inhibit HMG- CoA reductase and thereby block de novo cholesterol biosynthesis within infected cells; and, although the effect was modest, the drug inhibited the production of infectivity in a dose- dependent manner (Fig. 4C). Second, cultures were supplemented with cholesterol and the supplementation substantially enhanced the production of HCMV infectivity by cells that were also treated with LRP1- specific antibody (Fig. 4D). Mevastatin reversed the increased infectivity caused by inhibition of LRP1 activity to a limited extent and cholesterol supplementation demonstrated that LRP1 had little effect in the absence of extracellular cholesterol. Thus, cholesterol import is at least partly responsible for increased infectivity produced when LRP1 function is antagonized.
Example 5
[0045] Previous studies have shown that ABCA1 (a cellular cholesterol export receptor) expression is positively regulated by LRP1 (Zhou, Choi et al. 2009) and the low density lipoprotein receptor (LDLR) PM localization is negatively regulated by LRP1 (Zhou, Takayama et al. 2009). Accordingly, experiments were designed to test whether the increased cholesterol import and overall increase in intracellular cholesterol content in LRP1 knockdown cells was due to altered expression of these proteins.
[0046] Protein levels of LDLR were upregulated and ABCA1 were downregulated upon LRP1 knockdown (data not shown). Virus infection alone has the same effect as LRP1 knockdown, but to a lesser degree (data not shown). Further, it was observed that siRNA knockdown of LDLR partially reversed the increase in infectivity and intracellular cholesterol content resulting from LRP1 knockdown. Together, these results suggest that altered expression of LDLR and ABCA1 caused by LRP1 knockdown result in an overall increase in intracellular cholesterol levels with an increase in virion infectivity.
Example 6
[0047] Due to the ability to sequester cholesterol in its hydrophobic pocket, methyl-β- cyclodextrin (MCpD) removes cholesterol from membranes (Christian, Haynes et al. 1997). Thus, in order to directly test the role of virion envelope cholesterol in HCMV infection, purified virions were treated with various concentrations of MCpD to deplete cholesterol.
[0048] Gradient purified HCMV strain AD 169 virions were either mock treated or treated with increasing concentrations of MCpD for 30 min at 37°C. MCpD (50mM) treated virus was incubated in varying concentrations of cholesterol for 30 min at 37°C. Virus (no MCpD treatment) was incubated in varying concentrations of cholesterol for 30min at 37°C. In all experiments, infectivity (Fig. 5, left panels) and cholesterol content (Fig. 5, right panels) were determined for the treated samples. Infectivity of untreated virus was set to 100%. Virus cholesterol content was determined using the amplexred (Invitrogen) specrofluorometric assay.
[0049] Results showed that incubation of virus particles with MCpD resulted in a dose- dependent inhibition of HCMV infectivity (Fig. 5 A, left).
[0050] To confirm that MCpD treatment depleted virus of envelope cholesterol, the cholesterol content of MCpD-depleted virus was determined (Fig. 5 A, right). Treatment achieved a dose-dependent decrease in cholesterol content, with -90% depletion obtained with 50 mM MCpD, thus confirming that MCpD treatment produces efficient depletion of virion envelope cholesterol which results in decreased virus infectivity.
[0051] To determine whether the effect of MCpD could be rescued (and is thus reversible), and moreover, to determine if the loss of infectivity was due to cholesterol depletion, exogenous cholesterol was used to replenish the envelopes of MCpD-treated virions by incubating the virus particles with various amounts of free cholesterol.
[0052] Results showed that incubation with cholesterol partially restored HCMV infectivity (Fig. 5B, left) and envelope cholesterol (Fig. 5B, right) content in a dose- dependent manner.
[0053] To determine if virus infectivity could be increased by increasing virion cholesterol content alone, gradient purified HCMV virions were incubated with increasing
concentrations of cholesterol then gradient purified for a second time.
[0054] Results show that incubation with cholesterol increased virus infectivity (Fig. 5C, left) and overall cholesterol content (Fig. 5C, right) in a dose dependent manner,
demonstrating that enhanced virion cholesterol content increases the infectivity of virions.
Example 7
[0055] It is known that infection of host cells by enveloped viruses relies on the fusion of the viral envelope with either an endosomal membrane or the plasma membrane of the cell. Therefore, experiments were designed to test whether infectivity of MCpD-treated virus can be restored by using an "acid bypass assay" (Mercer and Helenius 2008) to circumvent the normal membrane fusion process during virus entry.
[0056] Cells were infected with MCpD (50mM)-treated or mock-treated HCMV strain AD 169 at a multiplicity of 3 pfu/cell, allowed to sit at 4°C for 30 min to allow virus binding, then treated with buffer at a neutral (7.4) or acidic (4.7) pH for 3 min, washed with PBS, and examined for IE1 expression 24 hours later.
[0057] HCMV particles, either treated with MCpD or left untreated, were bound to cells at 4°C, then incubated in a low pH buffer (pH 4.7) to artificially induce the fusion event, thus allowing fusion-deficient viruses to enter the cell and replicate. A neutral pH buffer was used as a control. Virus replication after acid bypass was visualized by IE1 expression at 24 hpi (Fig. 6).
[0058] Results showed that acid bypass of the fusion event caused a dramatic difference in the ability of MCpD-treated viruses to enter the cell and express IE1 protein. These data demonstrate that the level of envelope cholesterol is important for HCMV fusion with host cells.
[0059] All publications, patents and patent applications cited in this specification are herein incorporated by reference as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference. Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be readily apparent to those of ordinary skill in the art in light of the teachings of this invention that certain changes and modifications may be made thereto without departing from the spirit or scope of the appended claims.
References:
Boucher, P. and J. Herz (2011). "Signaling through LRP1: Protection from atherosclerosis and beyond." Biochem.Pharmacol., in press.
Christian, A. E., M. P. Haynes, et al. (1997). "Use of cyclodextrins for manipulating cellular cholesterol content." J Lipid Res 38(11): 2264-2272.
Gaultier, A., G. Simon, et al. (2010). "LDL Receptor-Related Protein 1 Regulates the Abundance of Diverse Cell-Signaling Proteins in the Plasma Membrane Proteome."
J.Proteome.Res.
Lillis, A. P., L. B. Van Duyn, et al. (2008). "LDL receptor-related protein 1 : unique tissue-specific functions revealed by selective gene knockout studies." Physiol Rev. 88(3): 887-918.
Mercer, J. and A. Helenius (2008). "Vaccinia virus uses macropinocytosis and apoptotic mimicry to enter host cells." Science. 320(5875): 531-535.
Orr, A. W., C. E. Pedraza, et al. (2003). "Low density lipoprotein receptor-related protein is a calreticulin coreceptor that signals focal adhesion disassembly." J Cell Biol 161(6): 1179-1189.
Terrand, J., V. Bruban, et al. (2009). "LRP1 controls intracellular cholesterol storage and fatty acid synthesis through modulation of Wnt signaling." J.Biol.Chem. 284(1): 381- 388.
Zhou, L., H. Y. Choi, et al. (2009). "LRP1 controls cPLA2 phosphorylation, ABCA1 expression and cellular cholesterol export." PLoS One 4(8): e6853.
Zhou, L., Y. Takayama, et al. (2009). "LRP1 regulates architecture of the vascular wall by controlling PDGFRbeta-dependent phosphatidylinositol 3-kinase activation."
PLoS.One. 4(9): e6922.

Claims

What is claimed is;
1. A method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that decreases activity of LRPl, wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound.
2. The method of claim 1 wherein the compound decreases LRPl binding activity.
3. The method of claim 1 or 2 wherein the compound binds LRPl and blocks LRPl binding activity.
4. The method of claim 3 wherein the compound is a blocking antibody.
5. The method of claim 3 wherein the compound is an extracellular fragment of
LRPl.
6. The method of any one of claims 1 and 2 wherein the compound decreases transcription and/or translation of a polynucleotide encoding LRPl.
7. The method of any one of claims 1 and 2 wherein the compound decreases surface expression of LRPl.
8. The method of any one of claims 1 and 2 wherein the compound decreases mobilization of LRPl to a cell membrane.
9. The method of any one of claims land 2 wherein the compound induces an inactive conformation of LRPl at a cell membrane.
10. A method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that increases intracellular cholesterol, wherein the virus particles produced in the cell in the presence of the compound display increased infectivity compared to virus particles produced in the cell in the absence of the compound.
11. The method of claim 10 wherein the compound increases cholesterol import into a cell, decreases cholesterol export from a cell, or both.
12. The method of claim 11 wherein the compound modulates LDL-cholesterol receptor (LDLR) activity.
13. The method of claim 11 wherein the compound modulates ABCA1 activity.
14. The method of claim 10 wherein the compound is cholesterol at an amount effective to increase intracellular levels of cholesterol.
15. The method of claim 14 wherein cholesterol is a cholesterol derivative.
16. The method of 14 wherein cholesterol is a cholesterol ester.
17. The method of any one of claims 14, 15 and 16 wherein cholesterol is present at a concentration of at least 5 μΜ, at least 10 μΜ, at least 15 μΜ, at least 20 μΜ, at least 25μΜ, at least 30 μΜ, at least 35 μΜ, at least 40 μΜ, at least 45 μΜ, at least 50 μΜ, at least 55 μΜ, at least 60 μΜ, at least 65 μΜ, at least 70 μΜ, at least 75 μΜ, at least 80 μΜ, at least 85μΜ, at least 90 μΜ, at least 95 μΜ, at least 100 μΜ, at least 110 μΜ, at least 120 μΜ, at least 130 μΜ, at least 140 μΜ, at least 150 μΜ or more but at a concentration that is not toxic to the host cell.
18. The method of claim 10 wherein the compound decreases LRP1 activity.
19. The method of claim 18 wherein the compound decrease LRP1 binding activity.
20. The method of claim 18 and 19 wherein the compound binds LRP1 and blocks LRP1 binding activity.
21. The method of claim 20 wherein the compound is a blocking antibody.
22. The method of claim 20 wherein the compound is an extracellular fragment of
LRP1.
23. The method of any one of claims 18 and 19 wherein the compound decreases transcription and/or translation of a polynucleotide encoding LRP1.
24. The method of any one of claims 18, 19 and 23 wherein the compound decreases surface expression of LRP1.
25. A method for production of virus particles in a virus-infected host cell comprising the step of contacting the cell with a compound that facilitates virus fusion with cells, wherein the virus particles produced in the cell in the presence of the compound display increased ability to fuse with cells compared to virus a[particles produced in the cells in the absence of the compound.
26. The method of any of the preceding claims wherein the cell is contacted with the compound prior to virus infection.
27. The method of any of the preceding claims wherein the cell is contacted with the compound after to virus infection.
28. The method of any of the preceding claims wherein the virus is an enveloped virus
29. The method of any of the preceding claims wherein the virus is an enveloped DNA virus or an enveloped RNA virus.
30. The method of any of the preceding claims wherein the virus is a herpes virus.
31. The method of any of the preceding claims wherein the virus is an alpha family herpes virus.
32. The method of any of the preceding claims wherein the virus is a beta family herpes virus.
33. The method of any of the preceding claims wherein the virus is an gamma family herpes virus.
34. The method of any of the preceding claims wherein the virus is CMV.
35. The method of any of the preceding claims wherein the virus is a pox virus, a non-envelope picorna virus, an RNA virus influenza virus, herpes simplex virus, Epstein Barr virus, hepatitis C virus, Dengue virus, HIV, mumps virus, measles virus, and/or parainfluenza virus.
36. The method of any of the preceding claims wherein the cell is a eukaryotic cell.
37. The method of any of the preceding claims wherein the cell is a mammalian cell.
38. The method of any of the preceding claims wherein the cell is a human cell.
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