WO2012058116A1 - Inhibitors of the renal outer medullary potassium channel - Google Patents
Inhibitors of the renal outer medullary potassium channel Download PDFInfo
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- WO2012058116A1 WO2012058116A1 PCT/US2011/057346 US2011057346W WO2012058116A1 WO 2012058116 A1 WO2012058116 A1 WO 2012058116A1 US 2011057346 W US2011057346 W US 2011057346W WO 2012058116 A1 WO2012058116 A1 WO 2012058116A1
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- benzofuran
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- 0 CC1=CC(*)=C(*)C2C=CC=CC12 Chemical compound CC1=CC(*)=C(*)C2C=CC=CC12 0.000 description 7
- HXFNCVGEEUQVOE-UHFFFAOYSA-N COc(cc(CCN1CC(C(F)(F)F)N(CCc(cc2CO3)ccc2C3=O)CC1)cc1)c1C#N Chemical compound COc(cc(CCN1CC(C(F)(F)F)N(CCc(cc2CO3)ccc2C3=O)CC1)cc1)c1C#N HXFNCVGEEUQVOE-UHFFFAOYSA-N 0.000 description 1
- WAIUZUYUUVFKFO-UHFFFAOYSA-N COc1cc(CCN2CCN(CCc(cc3)ccc3[N+]([O-])=O)CC2)ccc1C#N Chemical compound COc1cc(CCN2CCN(CCc(cc3)ccc3[N+]([O-])=O)CC2)ccc1C#N WAIUZUYUUVFKFO-UHFFFAOYSA-N 0.000 description 1
- JKCOMOXVYVPGLI-UHFFFAOYSA-N Cc1c(CCN2CCN(CCc(ccc(C#N)c3OC)c3F)CC2)ccc2c1COC2=O Chemical compound Cc1c(CCN2CCN(CCc(ccc(C#N)c3OC)c3F)CC2)ccc2c1COC2=O JKCOMOXVYVPGLI-UHFFFAOYSA-N 0.000 description 1
- ALUVPDFMBIYGDN-DENHBWNVSA-N Cc1c(COC2=O)c2ccc1CCN(CC1)CCN1N(C)/C(/[n]1nnnc1)=C\C=C Chemical compound Cc1c(COC2=O)c2ccc1CCN(CC1)CCN1N(C)/C(/[n]1nnnc1)=C\C=C ALUVPDFMBIYGDN-DENHBWNVSA-N 0.000 description 1
- RRZFDFYIDRCBCQ-UHFFFAOYSA-N Cc1cc2n[o]nc2cc1 Chemical compound Cc1cc2n[o]nc2cc1 RRZFDFYIDRCBCQ-UHFFFAOYSA-N 0.000 description 1
- IIWBLHFCFKBMTM-UHFFFAOYSA-N N#Cc1ccc(C(CCC2)C=O)c2c1 Chemical compound N#Cc1ccc(C(CCC2)C=O)c2c1 IIWBLHFCFKBMTM-UHFFFAOYSA-N 0.000 description 1
- ILBOKWNLAXHFBK-UHFFFAOYSA-N O=CCc(cc1)cc(CO2)c1C2=O Chemical compound O=CCc(cc1)cc(CO2)c1C2=O ILBOKWNLAXHFBK-UHFFFAOYSA-N 0.000 description 1
- ZNPZERUYWSMFQK-UHFFFAOYSA-N [O-][N+](c1ccc(CCN2C3CN(CCc(cc4)ccc4[N+]([O-])=O)CC2CC3)cc1)=O Chemical compound [O-][N+](c1ccc(CCN2C3CN(CCc(cc4)ccc4[N+]([O-])=O)CC2CC3)cc1)=O ZNPZERUYWSMFQK-UHFFFAOYSA-N 0.000 description 1
- LDHDLZVIOVDTCH-UHFFFAOYSA-N [O-][N+](c1ccc(CCN2CCNCC2)cc1)=O Chemical compound [O-][N+](c1ccc(CCN2CCNCC2)cc1)=O LDHDLZVIOVDTCH-UHFFFAOYSA-N 0.000 description 1
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- C07D295/04—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms
- C07D295/12—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly or doubly bound nitrogen atoms
- C07D295/135—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly or doubly bound nitrogen atoms with the ring nitrogen atoms and the substituent nitrogen atoms separated by carbocyclic rings or by carbon chains interrupted by carbocyclic rings
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- C07D213/02—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
- C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D213/60—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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- C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D213/60—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D213/72—Nitrogen atoms
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- C07D241/04—Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
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- C07D271/02—Heterocyclic compounds containing five-membered rings having two nitrogen atoms and one oxygen atom as the only ring hetero atoms not condensed with other rings
- C07D271/04—1,2,3-Oxadiazoles; Hydrogenated 1,2,3-oxadiazoles
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- C07D295/04—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms
- C07D295/06—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by halogen atoms or nitro radicals
- C07D295/073—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by halogen atoms or nitro radicals with the ring nitrogen atoms and the substituents separated by carbocyclic rings or by carbon chains interrupted by carbocyclic rings
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- C07D295/14—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
- C07D295/145—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals with the ring nitrogen atoms and the carbon atoms with three bonds to hetero atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings
- C07D295/15—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals with the ring nitrogen atoms and the carbon atoms with three bonds to hetero atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings to an acyclic saturated chain
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- C07D295/04—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms
- C07D295/14—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
- C07D295/155—Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals with the ring nitrogen atoms and the carbon atoms with three bonds to hetero atoms separated by carbocyclic rings or by carbon chains interrupted by carbocyclic rings
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- C07D307/77—Heterocyclic compounds containing five-membered rings having one oxygen atom as the only ring hetero atom ortho- or peri-condensed with carbocyclic rings or ring systems
- C07D307/87—Benzo [c] furans; Hydrogenated benzo [c] furans
- C07D307/88—Benzo [c] furans; Hydrogenated benzo [c] furans with one oxygen atom directly attached in position 1 or 3
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- C07D309/28—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D309/30—Oxygen atoms, e.g. delta-lactones
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- C07D405/02—Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings
- C07D405/12—Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings linked by a chain containing hetero atoms as chain links
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- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/08—Bridged systems
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- C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
- C07D487/08—Bridged systems
Definitions
- ROMK Renal Outer Medullary Potassium
- TALH thick ascending loop of Henle
- CCD cortical collecting duct
- inhibitors are predicted to represent novel diuretics for the treatment of hypertension and other conditions where treatment with a diuretic would be beneficial with potentially reduced liabilities (i.e., hypo- or hyperkalemia, new onset of diabetes, dyslipidemia) over the currently used clinical agents (see Lifton, R.P., A.G. Gharavi, and D.S. Geller, Molecular mechanisms of human hypertension, Cell, 2001, 104(4): p. 545-56).
- Human genetics Ji, W., et al, Rare independent
- the compounds of Formula I are inhibitors of the ROMK (Kir 1.1 ) channel and can thus act as diuretics and natriuretics and are valuable pharmaceutically active compounds for the therapy and prophylaxis of diseases, including, but not limited to, cardiovascular diseases such as hypertension and conditions resulting from excessive salt and water retention.
- Methods of treatment comprising administering a
- compositions of Formula I can be used in combination with other therapeutically effective agents, including other drugs useful for the treatment of hypertension and conditions resulting from excessive salt and water retention.
- the invention furthermore relates to processes for preparing compounds of Formula I, and
- compositions which comprise compounds of Formula I. s
- the present invention is directed to compounds having structural Formula I:
- Zl is selected from the group consisting of: MRL-ACV-00045
- Z? is selected from the group consisting of:
- one of Wl and W2 is N and the other is CH;
- Rl and 2 are each independently selected from the group consisting of -H, -F, -CI, -Br, -C3-C 6 cycloalkyl, -O 8, -SR 8 , -SOR 8 , -S0 2 R 8 , -(CH 2 )nOR8 and -Ci- 6 alkyl optionally substituted with 1-3 of -F;
- R ⁇ a and R3b is selected from the group consisting of -CN -N0 2 and tetrazoly, and the other is R3c wherein R3c selected from the group consistmg of -H, -F, -CI, -Br, -CH3, -S-CH3,
- R4a and R4b are selected from the group consistmg of CN, -N0 2 and tetrazolyl, and the other is R4c wherein R4c is selected from the group consisting of -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl and -OQ-aalkyl optionally substituted with 1-3 of -F; R , R , R and R are each independently selected from the group consisting of -H, -F, -CI,
- R and R are each independently selected from the group consisting of-H, -F, -CI, -C 1 -6 alkyl optionally substituted with 1 to 3 of -F, -C3_ 6 cycloalkyl and -OC 1-6 alkyl optionally substituted with 1 to 3 of-F;
- R are each independently selected from the group consisting of -H and -CH3;
- X and X 1 are each independently selected from -H and -Ci- 6 alkyl, MRL-ACV-00045 or X is joined together with Z and the carbon to which both are attached to form a fused ring
- R6 is joined together with Z2 and the intervening carbons to which each is attached fused ring system selected from:
- R is selected from the group consisting of -C 1 - 6 alkyl and-C3- 6 cycloalkyl.
- X and X are each independently selected from -H and -C ⁇ - 6 alkyl
- Y and Y are each independently selected from -H and -Ci -6alkyl, RL-ACV-00045 or Y 1 is joined together with Z 2 and the carbon to which both are attached to form a fused ring system
- R is selected from -H, -CH 3 , -C r6 alkyl and -C(0)OCi -3alkyl;
- R 6 is selected from -H, -CH 3 , -Ci- 6 alkyl and -0(0)00! -3alkyl,
- R6 is joined together with Z2 and the intervening carbons to which each is attached to form a fused ring system selected from:
- Embodiment B are corapounds selected from those wherein (1) Z2 is selected from 5 the group consisting of:
- R3a and R3b are -CN and the other is selected from
- Embodiment D are compounds of Formula I or II and the pharmaceutically acceptable salts thereof wherein l is ⁇ J J In a class of Embodiment D are compounds wherein (1) Z2 is
- R is joined with Z to form the fused ring system
- R 3a is selected from -N0 2 and -CN and R 3 is R 3c , or R " is -C and R is R ,
- R3a and R 4a are independently 15 selected from the group consisting of -CN and -NO2
- R3b and R4b is are independently selected from the group consisting of -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl
- R 3a and -OCi-salkyl optionally substituted with 1-3 of -F.
- R 3b and R a are both -H.
- R is selected from -CI, -F, -OCH3 and -OCH2CH3 ; and when R is -CN then R is selected from
- R 3a is selected from -F and
- R is -CN then R is selected from -F and -OCH3.
- R and R are each independently selected from the group consisting of -H, -F, -CI, -CH 3 optionally substituted with 1 to 3 of-F, and -OCH3 optionally substituted with 1 to 3 of -F; and more particularly -H, -F, and -CH3.
- R AA and R BB are each independently
- R 5 and R 6 are selected from -H and -CH3.
- alkyl is intended to include both branched- and straight-chain saturated aliphatic hydrocarbon groups having the specified number of carbon atoms. Commonly used abbreviations for alkyl groups are used throughout the 5 specification.
- Cycloalkyl is a cyclized alkyl ring having the indicated number of carbon 10 atoms.
- Examples of cycloalkyl include cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
- the cycloalkyl ring may be substituted on any available carbon which results in the creation of a stable structure, including the ring carbon which serves as the point of attachment to the rest of the molecule.
- an alkyl group that can be optionally substituted with 1-3 of -F includes, but is not limited to, -CH 3 , -CH 2 F, -CHF2, -CF3, -CH2CH3, -CH2-CH2F -CH2-CHF2, -CHF-CH 2 F, -CH2CF3, -CHF- CHF 2 , -(CH 2 ) 2 CH 3) -CH(CF 3 )-CH 3 , -(CH 2 ) 3 -CF 3) -(CH 2 )2CH(CF 3 )CH 3 , and -(CH 2 )5-CF 3 , as appropriate for the defined number of carbon atoms for the given alkyl group.
- Halo or halogen refers to -F (fluoro), -CI (chloro), -Br (bromo) and -I (iodo).
- Preferred halogens are -F and -CI.
- the present invention encompasses all stereoisomeric forms of the compounds of Formula I. Centers of asymmetry that are present in the compounds of Formula I can all independently of one another have (R) configuration or (S) configuration. When bonds to the chiral carbon are depicted as straight lines in the structural Formulas of the invention, it is
- the invention includes all possible enantiomers and diastereomers and mixtures 5 of two or more stereoisomers, for example mixtures of enantiomers and/or diastereomers, in all ratios.
- enantiomers are a subject of the invention in enantiomerically pure form, both as levorotatory and as dextrorotatory antipodes, in the form of racemates and in the form of mixtures of the two enantiomers in all ratios.
- the invention includes both the cis form and the trans form as well as mixtures of these forms in all ratios.
- preparation of individual stereoisomers can be carried out, if desired, by separation of a mixture by customary methods, for example by chromatography or crystallization, by the use of stereochemical ⁇ uniform starting materials for the synthesis or by stereoselective synthesis.
- a derivatization can be carried out before a separation of stereoisomers.
- the separation of a mixture of stereoisomers can be carried out at an intermediate step during the
- the 20 present invention includes all such isomers, as well as salts, solvates (including hydrates) and solvated salts of such racemates, enantiomers, diastereomers and tautomers and mixtures thereof.
- the atoms may exhibit their natural isotopic abundances, or one or more of the atoms may be artificially enriched in a particular isotope
- H isotopic forms of hydrogen
- different isotopic forms of hydrogen (H) include protium (lH) and deuterium (2H).
- Protium is the predominant hydrogen isotope found in nature. Enriching for deuterium may afford certain therapeutically useful conditions.
- Isotopically- enriched compounds within Formula I can be prepared without undue experimentation by conventional techniques well known to those skilled in the art or by processes analogous to those RL-ACV-00045 described in the Schemes and Examples herein using appropriate isotopically-enriched reagents and/or intermediates.
- the invention also includes the corresponding physiologically or toxicologically acceptable salts, in 5 particular the pharmaceutically utilizable salts.
- the compounds of Formula I which contain acidic groups can be used according to the invention, for example, as alkali metal salts, alkaline earth metal salts or as ammonium salts.
- such salts include but are not limited to sodium salts, potassium salts, calcium salts, magnesium salts or salts with ammonia or organic amines such as, for example, ethylamine, ethanolamine, triethanolamine or amino acids.
- Salts can be obtained from the compounds of Formula I by customary methods which are known to the person skilled in the art, for example by combination with an organic or inorganic acid or base in a solvent or dispersant, or by anion exchange or cation exchange from other salts.
- the present invention also includes all salts of the compounds of Formula I which, owing to low physiological compatibility, are not directly
- compounds of the present invention may exist in amorphous form and/or one or more crystalline forms, and as such all amorphous and crystalline forms and mixtures
- esters can optionally be made by esterification MM ⁇ -ACV-00045 of an available carboxylic acid group or by formation of an ester on an available hydroxy group in a compound.
- labile amides can be made.
- Pharmaceutically acceptable esters or amides of the compounds of this invention may be prepared to act as pro-drugs which can be hydrolyzed back to an acid (or -COO- depending on the pH of the fluid or tissue where 5 conversion takes place) or hydroxy form particularly in vivo and as such are encompassed within the scope of this invention.
- examples of pharmaceutically acceptable pro-drug modifications include, but are not limited to, -C 1-6 alkyl esters and -Ci-6alkyl substituted with phenyl esters.
- the compounds of Formula I according to the invention are inhibitors of ROMK, and are therefore useful as diuretic and/or natriuretic agents. ROMK inhibitors help to increase urination
- an object of the instant invention is to provide a method for inhibiting ROMK comprising administering a compound of Formula I in a ROMK-inhibitory
- Another object is to provide a method for causing diuresis, natriuresis or both, comprising administering a compound of Formula I in a therapeutically effective amount to a patient in need thereof.
- this invention Due to their activity as diuretics and natriuretic agents, this invention further provides the
- PAH pulmonary arterial hypertension
- cardiovascular disease diabetes, endothelial dysfunction, diastolic dysfunction, stable and unstable angina pectoris, thromboses, restenosis, myocardial infarction, stroke, cardiac insufficiency, pulmonary hypertonia, atherosclerosis, hepatic cirrhosis, ascitis, pre-eclampsia, cerebral edema, nephropathy, nephrotic syndrome, acute
- diabetes pulmonary arterial hypertension
- diastolic dysfunction diastolic dysfunction
- stable and unstable angina pectoris thromboses
- restenosis myocardial infarction
- stroke cardiac insufficiency
- pulmonary hypertonia atherosclerosis
- hepatic cirrhosis ascitis
- pre-eclampsia cerebral edema
- nephropathy nephrotic syndrome
- the compounds of the invention can be administered to a patient having, or at risk of having, one MRL-ACV-00045 or more conditions for which a diuretic would have therapeutic or prophylactic benefit such as those described herein.
- compounds that are ROMK inhibitors can be identified as those compounds which, when tested, have an IC50 of 5 ⁇ or less, preferably 1 ⁇ or less, and
- the dosage amount of the compound to be administered depends on the individual case and is, as is customary, to be adapted to the individual circumstances to achieve an optimum effect. Thus, it depends on the nature and the severity of the disorder to be treated,
- prophylactically effective dosage amount needed to prevent, counter, or arrest the progress of the condition It is expected that the compound will be administered chronically on a daily basis for a length of time appropriate to treat or prevent the medical condition relevant to the patient, including a course of therapy lasting days, months, years or the life of the patient.
- a daily dose of approximately 0.001 to 100 mg/kg, preferably 0.001 to 30
- the daily dose is preferably administered in a single dose or, in particular when larger amounts are administered, can be divided into several, for example two, three or four individual doses, and may be, for example but not limited to, 0.1 mg, 0.25 mg, 0.5 mg, 0.75 mg, 1 mg, 1.25 mg,
- the compound may be formulated for immediate or modified release such as extended or controlled release.
- patient includes animals, preferably mammals and especially humans, who
- Administering of the drug to the patient includes both self-administration and administration to the patient by another person.
- the patient may be in need of treatment for an existing disease or medical condition, or may desire prophylactic treatment to prevent or reduce the risk for developing said disease or medical condition or developing long-term complications from a
- therapeutically effective amount is intended to mean that amount of a drug or pharmaceutical agent that will elicit the biological or medical response of a tissue, a system, animal or human that is being sought by a researcher, veterinarian, medical doctor or other MRL-ACV-00045 clinician.
- a prophylactically effective amount is intended to mean that amount of a pharmaceutical drug that will prevent or reduce the risk of occurrence of the biological or medical event that is sought to be prevented in a tissue, a system, animal or human by a researcher, veterinarian, medical doctor or other clinician.
- a specific daily 5 dosage amount can simultaneously be both a therapeutically effective amount, e.g., for treatment of hypertension, and a prophylactically effective amount, e.g., for prevention or reduction of risk of myocardial infarction or prevention and reduction of risk for complications related to hypertension.
- the ROMK inhibitors may be administered
- parenteral as used herein includes subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques. Oral formulations are preferred, particularly solid oral dosage units such as pills, tablets or capsules.
- this invention also provides pharmaceutical compositions comprised of a compound of Formula I and a pharmaceutically acceptable carrier.
- the pharmaceutical compositions of this invention containing the active ingredient may be in forms such as pills, tablets, troches, lozenges, aqueous or oily suspensions, dispersible powders or granules, emulsions, hard or soft capsules, or syrups or elixirs.
- compositions and such compositions may contain one or more agents selected from the group consisting of sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide pharmaceutically elegant and palatable preparations.
- Tablets contain the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients, which
- excipients 25 are suitable for the manufacture of tablets.
- excipients may be for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, mannitol, calcium phosphate or sodium phosphate; granulating and disintegrating agents, for example, corn starch, or alginic acid; binding agents, for example starch, gelatin or acacia, and lubricating agents, for example, magnesium stearate, stearic acid or talc.
- inert diluents such as calcium carbonate, sodium carbonate, lactose, mannitol, calcium phosphate or sodium phosphate
- granulating and disintegrating agents for example, corn starch, or alginic acid
- binding agents for example starch, gelatin or acacia
- lubricating agents for example, magnesium stearate, stearic acid or talc.
- compositions may also contain other customary additives, for example, wetting agents, stabilizers, emulsifiers, dispersants, preservatives, sweeteners, colorants, flavorings, aromatizers, thickeners, diluents, buffer substances, solvents, solubilizers, agents for achieving a depot effect, salts for altering the osmotic pressure, coating agents or antioxidants.
- customary additives for example, wetting agents, stabilizers, emulsifiers, dispersants, preservatives, sweeteners, colorants, flavorings, aromatizers, thickeners, diluents, buffer substances, solvents, solubilizers, agents for achieving a depot effect, salts for altering the osmotic pressure, coating agents or antioxidants.
- Oral immediate-release and time-controlled release dosage forms may be employed, as
- Tablets may be uncoated or they may be coated by known techniques for aesthetic purposes, to mask taste or for other reasons. Coatings can also be used to delay disintegration and absorption in the gastrointestinal tract and thereby provide a MRL-ACV-00045 sustained action over a longer period.
- a time delay material such as glyceryl monostearate or glyceryl distearate may be employed.
- Formulations for oral use may also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium 5 phosphate or kaolin, or as soft gelatin capsules wherein the active ingredients is mixed with water or miscible solvents such as propylene glycol, PEGs and ethanol, or an oil medium, for example peanut oil, liquid paraffin, or olive oil.
- an inert solid diluent for example, calcium carbonate, calcium 5 phosphate or kaolin
- water or miscible solvents such as propylene glycol, PEGs and ethanol
- an oil medium for example peanut oil, liquid paraffin, or olive oil.
- Aqueous suspensions contain the active material in admixture with excipients suitable for the manufacture of aqueous suspensions.
- Oily suspensions may be formulated by suspending the active material
- a vegetable oil for example arachis oil, olive oil, sesame oil or coconut oil, or in mineral oil such as liquid paraffin.
- the oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents and flavoring agents may be added to provide a palatable oral preparation. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid. Syrups and elixirs may be formulated with
- sweetening agents for example glycerol, propylene glycol, sorbitol or sucrose.
- the instant invention also encompasses a process for preparing a pharmaceutical composition comprising combining a compound of Formula I with a pharmaceutically acceptable carrier. Also encompassed is the pharmaceutical composition which is made by combining a compound of Formula I with a pharmaceutically acceptable carrier.
- the carrier is comprised of
- a therapeutically effective amount of a compound of this invention can be used for the preparation of a medicament useful for inhibiting ROMK, for causing diuresis and/or natriuresis, and/or for treating, preventing or reducing the risk for any of the medical conditions described herein, in dosage amounts described herein.
- the amount of active compound of Formula I and/or its pharmaceutically acceptable salts in the pharmaceutical composition may be, for example but not limited to, from 0.1 to 200 mg, preferably from 0.1 to 50 mg, per dose on a free acid/free base weight basis, but depending on the type of the pharmaceutical composition and potency of the active ingredient it could also be lower or higher.
- Pharmaceutical compositions usually comprise 0.5 to 90 percent by weight of
- the compounds of Formula I inhibit ROMK.
- ROMK ROMK-like compounds
- they can also be employed as a scientific tool or as aid for biochemical investigations in which such an effect on ROMK is intended, and also for diagnostic purposes, for example in the in vitro diagnosis of
- One or more additional pharmacologically active agents may be administered in combination with a compound of Formula I.
- An additional active agent (or agents) is intended to MRL-ACV-000 5 mean a pharmaceutically active agent (or agents) different from the compound of Formula I.
- any suitable additional active agent or agents including but not limited to antihypertensive agents, anti-atherosclerotic agents such as a lipid modifying compound, antidiabetic agents and/or anti-obesity agents may be used in any combination with the compound of 5 Formula I in a single dosage formulation (a fixed dose drug combination), or may be
- angiotensin converting enzyme inhibitors e.g., alacepril, benazepril, captopril,
- angiotensin II receptor antagonists also known as angiotensis receptor blockers or ARBs (e.g., losartan i.e., COZAAR®, valsartan, candesartan, olmesartan, telmesartan and any of these drugs used in combination with hydrochlorothiazide such as HYZAAR®), neutral endopeptidase inhibitors (e.g., thiorphan and
- renin inhibitors e.g. urea derivatives of di- and tri- peptides (See U.S. Pat. No. 5,116,835), amino acids and derivatives (U.S. Patents 5,095,119 and 5,104,869), amino acid chains linked by non-peptidic bonds (U.S. Patent 5,114,937), di- and tri- peptide derivatives (U.S. Patent 5,106,835), peptidyl amino diols (U.S. Patents 5,063,208 and 4,845,079) and peptidyl beta-aminoacyl aminodiol carbamates (U.S. Patent 5,089,471); also, a urea derivatives of di- and tri- peptides (See U.S. Pat. No. 5,116,835), amino acids and derivatives (U.S. Patents 5,095,119 and 5,104,869), amino acid chains linked by non-peptidic bonds (U.S. Patent 5,114,937), di- and tri- peptid
- adrenergic agonists peripheral vasodilators (e.g. hydralazine), lipid lowering agents (e.g., HMG- CoA reductase inhibitors such as simvastatin, lovastatin, pravastatin, atorvastatin, pitavastatin and rosuvastatin, and cholesterol absorption inhibitors such as ezetimibe); niacin in immediate- release or controlled release forms, and particularly niacin in combination with a DP antagonist MRL-ACV-00045 such as laropiprant (TREDAPTIVE®) and/or with an HMG-CoA reductase inhibitor; niacin receptor agonists such as acipimox and acifran, as well as niacin receptor partial agonists; metabolic altering agents including insulin sensitizing agents and related compounds for the treatment of diabetes such as biguanides (e.g., metformin), meglitinides (e.g., metform
- synthesis of the covered compounds starts with alkylation of electrophile 1-1 (such as bromide, iodide, mesylatem or tosylate) with N-Boc protected piperazine (1-2) under 20 basic conditions.
- the Boc protecting group Greene, T.; Wuts, P. G. M. protective Groups in Organic Synthesis, John Wiley and Sons, Inc., New York, NY 1991
- the resulting piperazine 1-4 was alkylated for a second time with the corresponding electrophile (E) 1-5 to yield the product 1-6.
- the alkylation can be achieved under reductive amination conditions with the corresponding aldehyde or ketone using NaCNCH3 or Na(OAc)3BH (Scheme 2).
- Some MRL-ACV-00045 compounds were made via a combination of the two alkylation methods, depending on whether the electrophile or aldehyde (ketone) is more easily accessible.
- the final product may be prepared in one single step via a double alkylation or reductive amination with piperazine 3-1 (Scheme 3).
- intermediate 1-3 can also be prepared via a one pot ozonolysis - reductive amination method, when amine 4-1 is more easily accessible (Scheme 4).
- Scheme 4 tert- butyl diallylcarbamate 4-2 was first treated under ozonolysis conditions, which was followed by 10 addition of amine 4-1 , triethylamine, and Na(OAc) 3 BH. Further stirring of the reaction gave rise to intermediate 1-3. Removal of the Boc group gave rise to 1-4, which was further alkylated to furnish the final compound.
- the column was usually a Water Xterra MS C 18, 3.0 ⁇ 50 mm, 5 ⁇ .
- the flow rate was 1 mL/min, and the injection volume was l0 ⁇ L.
- UV detection was in the range 210-400 nm.
- the mobile phase consisted of solvent A (water plus 0.06% TFA) and solvent B (acetonitrile plus 0.05% TFA) with a gradient of 100% solvent A for 0.7 min changing to 100% solvent B over
- Preparative HPLC purifications were usually performed using a mass spectrometry directed system. Usually they were performed on a Waters Chromatography Workstation configured with LC-MS System Consisting of: Waters ZQ single quad MS system with Electrospray Ionization, Waters 2525 Gradient Pump, Waters 2767 Injector / Collector, Waters 996 PDA Detetor, the MS
- Tetramethylsilane was used as internal reference in 5 CD3CI solutions, and residual CH3OH peak or TMS was used as internal reference in CD3OD solutions. Coupling constants (J) were reported in hertz (Hz). Chiral analytical chromatography was performed on one of Chiralpak AS, Chiralpak AD, Chiralcel OD, Chiralcel IA, or Chiralcel OJ columns (250x4.6 mm) (Daicel Chemical Industries, Ltd.) with noted percentage of either ethanol in hexane (%Et/Hex) or isopropanol in heptane (%IP A/Hep) as isocratic solvent systems.
- Abbreviations used herein include: -C(0)C3 ⁇ 4 (Ac); acetic acid (AcOH; HOAc);
- min minute(s) (min); methyl t-butylether (MTBE); medium pressure liquid chromatography (MPLC); N-methylmorpholine-N-oxide ( MO); phenyl (Ph);
- tetrakis(triphenylphosphine)palladium Pd(PPh 3 )4); /rii(dibenzylidineacetone)dipalladium 25 (Pd 2 (dba) 3 ); (benzotriazol-l-yloxy)tripyrrolidino-phosphonium hexafluorophosphate (PyBOP); retention time (Rj); room temperature (rt or RT); saturated aq sodium chloride solution (brine); triethylamine (TEA); trifluoroacetic acid (TFA); tetrahydrofuran (THF); flash chromatography (FC); liquid chromatography (LC); liquid chromatography-mass spectrometry (LCMS or LC- MS); supercritical fluid chromatography (SFC); f-butyloxycarbonyl (Boc or BOC);
- DAST Diethylaminosulfur trifluoride
- DCM dichloromethane
- DMA dimethylacetamide
- DMAC dimethylsulfoxide
- DPPP 1,3-Bis(diphenylphosphino)propane
- HOAc acetic acid
- m-CPBA 3-chloroperoxybenzoic acid
- Me methyl
- MeOH methyl
- NBS N- bromosuccinamide
- TLC thin layer chromatography
- the 5-bromo-2 tetralone (2.0 g, 8.9 mmol), tetrakis(triphenylphosphine)palladium (0.62 g, 0.53 mmol) and zinc cyanide (0.73 g, 6.2 mmol) were added to 4 ml DMF in a 20 ml microwave tube.
- the mixture was degassed and microwaved at 80°C for 30 mins. TLC showed no starting material left and the mixture was diluted with ethyl acetate and washed with ammonium
- StepB tert -Butyl 4-(6-cvano- 1.2.3 ⁇ 4-tetrahvdronaphthalen-2-yl ' )pipeTazine- 1 -carboxylate
- Titanium (TV) isopropoxide (0.21 ml, 0.73 mmol), 6-oxo-5, 6, 7, 8-tetrahydronaphthalene-2- carbonitrile (lOOmg, 0.58 mmol), and teri-butyl piperazine-l-carboxylate(l 10 mg, 0.58 mmol) were stirred at room temperature. After 1 hour, ethanol (10 ml) and sodium cyanoborohydride
- Step C 6-Piperazin-l-vI-5.6.7.8-tetrahvdronaphthalene-2-carbonitrile
- Step A 5-( " l,3-Dioxolan-2-ylmethyl)-2-benzofuran-l(3/iA-one
- Step C S-Q-BromoethvD ⁇ -benzofuran-USJjVone
- Step A l.l-Dimethyleroyl-4-[2-n-oxo-13-dihydro-2-benzofura ⁇
- Step B 5-(2-Piperazin- 1 -ylethylV2-benzofuran- 1 (3H)-one hydrochloride
- Step B S-Bromo-4-methyl-2-benzofuran-l( " 3ff)-one
- Step C 4-Memyl-5-prop-2-en-l-yl-2-benzofuran-l(3 /)-one
- Step D (4-Methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl)acetaldehvde
- Step F 4-Methyl-5-(2-piperazin-l-yleA ⁇ hydrochloride
- Step A 4-Memyl-5-prop-2-en-l-yl-2-beri2ofuran-U3J3 ⁇ 4 )-one
- Step B ⁇ -Methyl-l-oxo-l.S-dihvdro ⁇ -benzofuran-S-vnacetic acid
- Step C 1.1-Dimethylethyl (4-methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl ' )acetate
- Step D 1.1 -Dimethylethyl-2-f 4-methyl-l -oxo-1.3-dihvdro-2-benzofuran-5-yl)propanoate
- Step F S-f2-Hvdroxy-l-methylemyl -memyl-2-benzofuran-l(3/ )-one
- Step G 2-(4-Methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl)propanal
- Step A fer ⁇ Bulyl-4-[2-f4-methyl-l-oxo-13-dih ⁇
- Step B 4-MethvI-5-( 1 -methyl-2-piperazin-l -ylethyl)-2-benzofuran-l f 3HVone
- Ste B 6-il.3-Dioxolan-2-ylmethylV3-methyl-3.4-dihvdro-lJ3 ⁇ 4 r -isochromen-l-one
- a sealed tube was charged with aryl bromide, palladium(II) acetate (0.028 g, 0.12 mmol) and tri- t-butylphosphine-BF 4 complex (0.072 g, 0.249 mmol) and sealed.
- the tube was evacuated and refilled with nitrogen before DMF (12 ml) and 6-bromo-3-methyl-3,4-dihydro-l -isochromen-l- one (0.75 g, 3.1 mmol) were added followed by bromo(l,3-dioxolan-2-ylmethyl)zinc (6.2 ml, 3.1
- Step C fe -Butyl 4-[2-(3-me1hyl-l-oxo-3.4-dihyc3 ⁇ 4o-lH-isoclrromen-6-yl)ethyl1piperazine-l- carboxylate
- Step A (3S -6-Bromo-3-methyl-3.4-dihvdro-lfl ' -isochromen-l-one
- Ste B GS ' t ⁇ -fl -Dioxolan ⁇ -ylmethylVS-methyl-S ⁇ -dihydro-liy-isochromen-l-one
- Step C rerf-ButvI 4-i2-rr35 ⁇ -3-methyl-l-oxo-3.4-dihvdro-ljy-isochromen-6- yl ethyllpiperazine-l-carboxylate
- terf-Butyl 4- ⁇ 2-[(35)-3-memyl-l-oxo-3,4-(Jihydro-lii-isochromen-6-yl]ethyl ⁇ piperazine-l- carboxylate was obtained using the procedure described for the synthesis of ieri-butyl 4- ⁇ 2-[3- 25 memyl-l-oxo-S ⁇ dmydro-lii-isochromeii-e-yllethylJpiperazine-l-carboxylate utilizing the chiral S-enantiomer as the starting material in the reaction.
- Step B 5-f2-Piperazin-l-ylethylV2.1.3-benzoxadiazole
- Step A ferf-Butyl 4-( " 5-bromo-2.3-dihvdro-lH-inden-2-yl)piperazine-l-carboxylate
- reri-butyl di(prop-2-en-l-yl)carbamate (0.74 mL, 3.4 mmol) was dissolved in dichloromethane (10 mL). The solution was cooled to -78 °C. To above solution was bubbled ozone for 15 min. The solution turned into light blue and the color stayed. To above solution was bubbled nitrogen to remove excess ozone until the solution turned into
- Step B fe -Butyl 4-f5-cvano-2.3-dihvdro-lH-inden-2-vDpiperazine-l-carboxylate
- Step C 4-f5-Cvano-2.3-dihydro-lg-inden-2-yl ' )piperazin-l-ium chloride
- Step A fS-Cl -Dioxo-LS-dihvdro ⁇ H-isoindol ⁇ -vnphenyllacetic acid
- Step B 2-r7-Oxc-5.6.7.8 etrahvdroraphthalen-2-ylVlH-isoindole-1.3 ⁇ " 2HVdione
- Step E 2 3-Nitro-7-14-ftrifluoroa ⁇ tyl>pip ⁇ - isoindole- 1,3(2H Vdione
- Step F fe -Butyl 4-(7-amino-6-mtro-1.23.4-tetrahydronaphthalen-2-vl " )pipera2ine-l-carboxylate
- 2- ⁇ 3-Nitro-7-[4-(trifluoroacetyl)piperazin-l-yl]-5,6,7,8-tetrahydronaphthalen-2- yl ⁇ -lH -isoindole-l,3(2H )-dione 150 mg, 0.30 mmol
- Ethanol 5 mL
- Step G ferf-Butyl 4-(l-oxido-5.6.7.8-tetrahydronaphthol2.3-ciri.2.51oxadiazol-6-vnpiperazine- 1-carboxylate
- hypochlorite (1.3 mL, 1.3 mmol) was dropped into the reaction. LC showed quite slow reaction. Another 1.3 mL of sodium hypochlorite was added to complete the reaction. The desired product was separated by reverse phase HPLC (water: Acetonitrile with 0.1% TFA). LC-MS (IE, m/z): 375 [M + 1] +
- Step I 6-Piperazin-l-yl-S.6.7.8-tetrahvdronaphtho[2.3-c1f 1.2.51oxadiazole hydrochloride
- Step B l-[2-(6-Nitropyridin-3-vDemyl]piperazine hydrochloride
- Lithium chloride (0.64 g, 15.1 mmol) was added to a mixture of 5-bromo-2,l,3-benzoxadiazole (1.0 g, 5.0 mmol), tetrakis(triphenylphosphine)palladium (0.29 g, 0.25 mmol) and allyl tri-n- butyltin (1.87 ml, 6.0 mmol) in 30 ml toluene then refluxed for 3 hours. The reaction was filtered, concentrated, and loaded into an ISCO 120 gm Redi-Sep then eluted with a gradient of
- Step A l-Oxo-2,3-dihvdro-lH-indene-4-carbonitrile
- Step B ( 1 EV 1 -[( Methyloxytaiethylidene] -2.3 -dihydro- 1 H-indene-4-carbonitrile
- Step C l-Formyl-2.3-dihvdro-lH-indene-4-carbonitrile
- Step D fert-Butyl 4- i4-cvano-2.3-dihydro-lH-inden-l-yl)methyl]piperazine-l-carboxylate MRl-ACV-00045 l-Formyl-2,3-dihydro-lH-indene-4-carbonitrile (0.22 g, 1.3 mmol) was dissolved in MeOH (8 mL) and treated with ierf-butyl piperazine-l-carboxylate (0.35 g, 1.9 mmol) followed by treatment of sodium cyanoborohydride (0.40 g, 6.43 mmol) and few drops of Acetic acid. The resulting mixture was then stirred at room temperature overnight. LC indicated completion of the 5 reaction.
- Step A (4By4-(MemoxymemylideneV3.4-dihvdro-2ff-cto ⁇
- Step B 4-Formyl-3.4-dihvdro-2g-chromene-7-carbonitrile
- Step A (5EV5-(Methoxymethylidene)-5.6.7-8-tetrahvdronaphthalene-2-carbonitrile
- Step B 5-Formyl-5,6,7,8-tetrahvdronaphthalene-2-carbonitrile
- Step B Methyl f3-fluoro-4- ⁇
- Step A Di-ferf-butyl i4-cvano-2.5-difluorophenyPpropanedioate MRL-ACV-00045
- Step B (4-Cyano-2.5-difluorophenyl)acetic acid
- Step D 2.5-Difluoro-4-(2-hvdroxyethyl)benzonitrile:
- Step E 2.5-Difluoro-4-(2-oxoethvDbenzonitrile: MRL-ACV-00045
- Step A Di-terf-butyl(3-bromo-4-cyanophenyl)malonate
- Step B (3-Bromo-4-cvanophenyl) acetic acid
- Step A Ethyl (3-methoxy-4-([(trifluoromethyl)sulfonyl1oxy)phenyl)acetate
- Step B Ethyl (4-cvano-3-methoxyphenvD acetate: MRL-ACV-00045
- Step D 4-(l-Hydroxypropan-2-yl)-2-methoxybenzonitrile
- Step E 2-Methoxy-4-(l-oxopropan-2-yl)benzonitrile MRL-ACV-00045
- Step B 4-n-Hvdroxy-2-methylpropan-2-yl ' )-2-methoxybenzonitrile
- Step C 2- ⁇ 6 ⁇ 3 ⁇ 4 ⁇ ⁇ -4-(2 ⁇ 6 ⁇ 1-1- ⁇ ⁇ 3 ⁇ -2- ⁇ 1 ⁇ 6 ⁇ 6 MRL-ACV-00045
- Step A 2 ⁇ [6-(lH-tettazol-l-vDpyridin-3-yl1emanol
- Step B [6-(lH-tetrazol-l-vl)pvridin-3-yl1acetaldehvde
- Step A 4-(2-Hvdroxypropyl)-2-methoxybenzonitTile MRL-ACV-00045
- Step A 6-Fluoro-7-hvdroxy-2.3-dihvdro-4//-chromen-4-one
- Step B 6-Fluoro-4-oxo-3.4-dihvdro-2ff-chromen-7-yl trifluoromethanesulfonate L-ACV-00045
- Trifluoromethylsulfonyl anhydride (0.26 mL, 1.6 mmol) was added to above solution dropwise. The reaction was warmed to RT and stirred at that temperature for 2 hours. The mixture was diluted with EtOAc, washed with saturated CuS0 4 , brine and water. The organic phase was dried over MgS0 4 , filtered and concentrated. Above crude was purified on flash column chromatography to give the product. LC-MS (IE, m/z): 315.2 [M + 1] .
- Step C 6-Fluoro-4-oxo-3.4-dihvdro-2ii -chromene-7-carbonitrile
- Step D (4E)-6-fluoro-4-(memyoxymethylideneV3.4-dihydro-2g-chromene-7-carbonitrile
- (methoxymethyl) (triphenyl)phosphonium chloride 1.3 g, 3.8 mmol
- THF 20 mL
- the solution was cooled to -78 °C.
- Step E 6-Fluoro-4-formyl-3.4-dihydro-2g-chromene-7-carbonitrile
- Step B 5-Fluoro-2-methoxy-4-i2-oxoethyPbenzomtrile
- Step A ferf-butyl (2SV6-cvano-l,2,3.4-tetrahvdronaphthalen-2-yl]carbamate
- the enantiomers were separated using the AD column with 5% EtOH/heptane.
- the first peak was assumed as the tert-butyl [(2S)-6-cyano-l,2,3,4-tetrahydronaphthalen-2-yl]carbamate, and 30 the second peak was assumed as the /er/-butyl [(2R)-6-cyano-l ,2,3,4-tetrahydronaphthalen-2- yljcarbamate.
- Step B r6SV6-Amino-5,6,7.8-tetrahvdronaphthalene-2-carbonitrile
- Step C (6SV6-Piperazin- 1 -yl-S ⁇ .S-tetrahydronaphthalene ⁇ -carbonitrile MRL-ACV-00045
- (6R)-6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile was prepared following the same procedure as INTERMEDIATE 3 la from tert-butyl (e-cyano-l ⁇ -tetrahydronaphthalen- 15 2-yl)carbamate ieri-butyl [(2R)-6-cyano-l,2 I 3,4-tetrahydronaphthalen-2-yl]carbamate.
- Step C 4-(2-HvdroxethylV2-(trifluoromethoxy " )benzonitrile
- Step D 4-(2-Oxoethyl)-2-( ' trifiuoromethoxy ' >benzonitrile
- Step A 4-(2-hydroxyemvDnaphthalene-l -carbonitrile
- Step B 4-(2-OxoethvDnaphthalene-l -carbonitrile
- Step B 2-(3 ⁇ 4moxy)4-(2-oxoemviy benzonitrile
- Step B 4-(2-Oxoethyl)-2.3.5-trifluorobenzonitrile
- Step A ferf-Butyl methyl g-cMoro ⁇ -cvano-S-fluorophenvDmalonate
- Step D (3-Chloro-2-fluoro-4-(2-oxoethyr)benzonitrile MRL-ACV-00045
- Step C 3-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile RL-ACV-00045
- Step A f2-ChJoro-4-cyano-5-methoxyphenyl)acetic acid
- Step A t-Butyl methyl (4-cyano-3-fluoro-2-methylphenyl)malonate
- Step B Methyl f4-cvano-3-fluoro-2-memylphenyr)acetate
- Step C 2- ⁇ 1 ⁇ - ⁇ 6 ⁇ 1-4- 2 ⁇ 6 ⁇ 1 ⁇ 6 ⁇ 6
- Step B 4-(2- ⁇ 0 ⁇ 6 ⁇ -2-methoxy-3-methylbenzonitrile
- Step C 2-Methoxy-3-methyl-4-C2-oxoethyl benzonitrile
- Step D 4-Fluoro-2-memoxy-S-(2-oxoemvDbenzonitrile
- 6-f4-f2-(4-Nitrophenyl)ethyll piperazin-lyl>-5.6.7.8-tetrahYdronaphthalene-2-carbonitrile A mixture of 6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile (generated from treateding ieri-Butyl 4-(6-cyano-l, 2, 3, 4-tetrahydronaphthalen-2-yl) piperazine-l-carboxylate (110 mg, 0.32 mmol) with trifluoroacetic acid (2 ml, 26 mmol) at RT), l-(2-bromoethyl)-4-
- Step A l- 2-f4-bromophenylte1liyll ⁇ -[2-(4-niliophenyl)ethyllDiperazine
- Step B 4-(2-(4-[2-(4-rntxophenyl)ethyl]pipera2in-l-yl ⁇ ethyl)ben2onitrile
- Step A 1.4-Bis[2-(4-bromophenvDethvnpiperazine
- Step B 4 ⁇ '-(Tiperazine-1.4-diyldiethane-2.1-diyl ' )dibenzonitriIe:
- Tetrakis(triphenylphosphine)palladium 15 mg, 0.013 mmol
- zinc cyanide 52 mg, 0.44 mmol
- l,4-bis[2-(4-bromophenyl)ethyl]piperazine 100 mg, 0.22 mmol
- Added more Zn(CN) 2 52 mg, 0.44 mmol
- microwaved for another lhour The reaction mixture was cooled and filtered.
- Step B Methyl (2S ⁇ )-3-(4-nitrophenv -2-(4-[2-r4-nitrophenyl)ethyl1piperazin-l-vnpropanoate
- Step B ⁇ 1.4-Bis[2-(4-nitrophenyl)ethyllpiperazin-2-yl ⁇ methanol MRL-ACV-00045
- Step A l-[2-(4-Nitrophenyl)e1hyl]-4-[2-(4-nitrophenvl)propanoyl]piperazine
- Step A l-Allyl-4-mtro-2-flrifluoromemvl)benzene
- Titanium(IV) isopropoxide (1.8 ml, 6.0 mmol) was added to a mixture of l-[2-(4- nitrophenyl)ethyl]piperazine hydrochloride (0.82 g, 3.0 mmol) and 2,l,3-benzodiazole-5-yl acetaldehyde (0.49 g, 3mmol) in ethanol (5 ml) then added sodium cyanoborohydride (0.75 g, 5 12.0 mmol) and 2 drops of acetic acid. The reaction was stirred at room temperature for 16 hours.
- Step B Ethyl 3-(4-cvano-3-methoxyphenyl)oxirane-2-carboxylate
- Step D 2-Memoxy-4-(2-?4-[2-f4-nitrophenyl)ethyl1piperazin-l-ylkmyl)benzonitrile
- Step B Ethyl 3-(4-cvano-2-methylphenyl)oxirane-2-carboxylate
- Step D 3-Methyl-4-((3 ⁇ 4>-2- 4- 2-(4-ni1rophenvnethyl1piperazin-l-vUvinyl ' )benzonitrile
- Step B Ethyl 3-(4-cyano-3-memylphenyDoxirane-2-carboxylate
- Step D 2-Methyl-4-(2- ⁇ 4- [2-(4-mtrophenvfiethyl1piperazm- 1 -yl ) elhvDbenzonitrile
- Step D 2,6-Difluoro-4-f 2- ⁇ 4- [2-(4-nitrophenvl)ethyllpiperazin-l -yl ⁇ ethvDbenzonitrile
- Step B 4-(2.3-DihvdroxypropyD-3-methoxybenzonitrile
- Step D 3-Methoxy-4-f2- ⁇ 4-f2-(4-mtrophenv ethyllpiperazm-l-yl ⁇ ethyl)benzonitrile
- Step B 4- 2.3-Dihvdroxypropy -2-fluorobenzonitrile
- Step D 2-Fluoro-4-(2- 4-f2-f4-mtrophenvnethyl1piperazin-l-yl ⁇ ethvDben2»nitrile:
- Example 38 was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2,5-difluoro-4-(2- 25 oxoethyl)benzonitrile.
- LC-MS (IE, m/z): 412.1 [M + 1] + . (0.23 uM)
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Abstract
This invention relates to compounds having structural Formula I: and pharmaceutically acceptable salts thereof which are inhibitors of the Renal Outer Medullary Potassium (ROMK) channel (Kirl.1). The compounds of Formula I are useful as diuretics and natriuretics and therefore are useful for the therapy and prophylaxis of disorders resulting from excessive salt and water retention, including cardiovascular diseases such as hypertension and chronic and acute heart failure.
Description
MRL-ACV-00045
TITLE OF THE INVENTION
INHIBITORS OF THE RENAL OUTER MEDULLARY POTASSIUM CHANNEL
BACKGROUND OF THE INVENTION
5 The Renal Outer Medullary Potassium (ROMK) channel (Kirl.l) (see e.g., Ho, K., et al.,
Cloning and expression of an inwardly rectifying ATP -regulated potassium channel, Nature, 1993, 362(6415): p. 31-8.1, 2; and Shuck, M.E., et al., Cloning and characterization of multiple forms of the human kidney ROM-K potassium channel, J Biol Chem, 1994, 269(39): p. 24261- 70) is a member of the inward rectifier family of potassium channels expressed in two regions of
10 the kidney: thick ascending loop of Henle (TALH) and cortical collecting duct (CCD) (see Hebert, S.C., et al., Molecular diversity and regulation of renal potassium channels, Physiol Rev, 2005, 85(1): p. 319-713). At the TALH, ROMK participates in potassium recycling across the luminal membrane which is critical for the function of the Na+/K+/2C1" co-transporter, the rate-determining step for salt reuptake in this part of the nephron. At the CCD, ROMK provides
15 a pathway for potassium secretion that is tightly coupled to sodium uptake through the amiloride- sensitive sodium channel (see Reinalter, S.C., et al, Pharmacotyping ofhypokalaemic salt-losing tubular disorders, Acta Physiol Scand, 2004, 181(4): p. 513-21 ; and Wang, W., Renal potassium channels: recent developments, Curr Opin Nephrol Hypertens, 2004, 13(5): p. 549-55). Selective inhibitors of the ROMK channel (also referred to herein as inhibitors of ROMK or ROMK
20 inhibitors) are predicted to represent novel diuretics for the treatment of hypertension and other conditions where treatment with a diuretic would be beneficial with potentially reduced liabilities (i.e., hypo- or hyperkalemia, new onset of diabetes, dyslipidemia) over the currently used clinical agents (see Lifton, R.P., A.G. Gharavi, and D.S. Geller, Molecular mechanisms of human hypertension, Cell, 2001, 104(4): p. 545-56). Human genetics (Ji, W., et al, Rare independent
25 mutations in renal salt handling genes contribute to blood pressure variation, Nat Genet, 2008,
40(5): p. 592-9; and Tobin, M.D., et al., Common variants in genes underlying monogenic hypertension and hypotension and blood pressure in the general population, Hypertension, 2008, 51(6): p. 1658-64) and genetic ablation of ROMK in rodents (see Lorenz, J.N., et al., Impaired renal NaCl absorption in mice lacking the ROMK potassium channel, a model for type II
30 Banter's syndrome, J Biol Chem, 2002, 277(40): p. 37871-80 and Lu, M., et al., Absence of small conductance K+ channel (SK) activity in apical membranes of thick ascending limb and cortical collecting duct in ROMK (Bartter's) knockout mice, J Biol Chem, 2002, 277(40): p. 37881-7) support these expectations. To our knowledge, the first small molecule selective inhibitors of ROMK were reported from work done at Vanderbilt University as described in
35 Lewis, L.M., et al., High-Throughput Screening Reveals a Small-Molecule Inhibitor of the Renal Outer Medullary Potassium Channel and Kir7.1, Mol Pharmacol, 2009, 76(5): p. 1094-1103. However, continuing discovery of selective small molecule inhibitors of ROMK is still needed for the development of new treatments for hypertension and related disorders.
MRL-ACV-00045
5 and the pharmaceutically acceptable salts thereof. The compounds of Formula I are inhibitors of the ROMK (Kir 1.1 ) channel and can thus act as diuretics and natriuretics and are valuable pharmaceutically active compounds for the therapy and prophylaxis of diseases, including, but not limited to, cardiovascular diseases such as hypertension and conditions resulting from excessive salt and water retention. Methods of treatment comprising administering a
10 therapeutically or prophylactically effective amount of a compound of Formula I to a patient in need of a diuretic and/or natriuretic agent are also provided. Compounds of Formula I can be used in combination with other therapeutically effective agents, including other drugs useful for the treatment of hypertension and conditions resulting from excessive salt and water retention. The invention furthermore relates to processes for preparing compounds of Formula I, and
15 pharmaceutical compositions which comprise compounds of Formula I. s
DETAILED DESCRIPTION OF THE INVENTION
The present invention is directed to compounds having structural Formula I:
wherein R? is selected from the group consisting of -EL, -F, -CH3, -CF3, -CHF2, -CH2F, - CH2OH, cyclopropyl and -CH2C(=0)0-CH3, or R? represents di-substitution on a single carbon with two of -F or two of -CH3;
Zl is selected from the group consisting of:
MRL-ACV-00045
Z? is selected from the group consisting of:
one of Wl and W2 is N and the other is CH;
5 Rl and 2 are each independently selected from the group consisting of -H, -F, -CI, -Br, -C3-C6cycloalkyl, -O 8, -SR8, -SOR8, -S02R8, -(CH2)nOR8 and -Ci-6alkyl optionally substituted with 1-3 of -F;
one of R^a and R3b is selected from the group consisting of -CN -N02 and tetrazoly, and the other is R3c wherein R3c selected from the group consistmg of -H, -F, -CI, -Br, -CH3, -S-CH3,
10 -NH-CH3, -O-cyclopropyl and -OC j-3alkyl optionally substituted with 1-3 of -F;
one of R4a and R4b is selected from the group consistmg of CN, -N02 and tetrazolyl, and the other is R4c wherein R4c is selected from the group consisting of -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl and -OQ-aalkyl optionally substituted with 1-3 of -F; R , R , R and R are each independently selected from the group consisting of -H, -F, -CI,
15 -CH3 optionally substituted with 1 to 3 of -F, and -OCH3 optionally substituted with 1 to 3 of
-F;
c d
R and R are each independently selected from the group consisting of-H, -F, -CI, -C1 -6alkyl optionally substituted with 1 to 3 of -F, -C3_6cycloalkyl and -OC1-6alkyl optionally substituted with 1 to 3 of-F;
e t
20 and R are each independently selected from the group consisting of -H and -CH3;
X and X1 are each independently selected from -H and -Ci-6alkyl,
MRL-ACV-00045 or X is joined together with Z and the carbon to which both are attached to form a fused ring
-Ci-6alkyl.
or R is joined together with Z and the intervening carbons to which each is attached to form a
or R6 is joined together with Z2 and the intervening carbons to which each is attached fused ring system selected from:
MRL-ACV-00045
provided that only one of R.5 and Zl or R.6 and Z2 is joined to form the fused ring system; and R is selected from the group consisting of -C1-6alkyl and-C3-6cycloalkyl.
and the pharmaceutically acceptable salts thereof wherein:
X and X are each independently selected from -H and -C \ -6alkyl;
Y and Y are each independently selected from -H and -Ci -6alkyl,
RL-ACV-00045 or Y 1 is joined together with Z 2 and the carbon to which both are attached to form a fused ring system
R is selected from -H, -CH3, -Cr6 alkyl and -C(0)OCi -3alkyl; and
R6 is selected from -H, -CH3, -Ci-6 alkyl and -0(0)00! -3alkyl,
or R6 is joined together with Z2 and the intervening carbons to which each is attached to form a fused ring system selected from:
and all other variables are as defined in Formula I.
In Embodiment A are compounds of Formula I or II and the pharmaceutically acceptable salts thereof wherein Zl is selected from:
15 or -CH3; and Rd is -H.
MRL-ACV-00045
In a class of Embodiment B are corapounds selected from those wherein (1) Z2 is selected from 5 the group consisting of:
system
wherein one of R3a and R3b is -CN and the other is selected from
-F, -CI, -OCH3, and -OCH2CH3.
15 In Embodiment D are compounds of Formula I or II and the pharmaceutically acceptable salts thereof wherein l is ^ J J In a class of Embodiment D are compounds wherein (1) Z2 is
or (2) R is joined with Z to form the fused ring system
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
7
D and the pharmaceutically acceptable salts thereof wherein R is -H.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or D and the pharmaceutically acceptable salts thereof wherein Z1 is selected from the group 5 consisting
10 In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
1 2
D and the pharmaceutically acceptable salts thereof wherein R and R are independently selected from -H and -CH3.
In another embodiment are compounds of Formulas I or II, and Embodiments A, B, C or D and the pharmaceutically acceptable salts thereof wherein R3a and R4a are independently 15 selected from the group consisting of -CN and -NO2, and R3b and R4b is are independently selected from the group consisting of -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl
3a and -OCi-salkyl optionally substituted with 1-3 of -F. In a further embodiment, when R is -NO2 then R3b and Ra are both -H.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
20 D and the pharmaceutically acceptable salts thereof wherein when R3a is -CN then R3b is
4a 4b
selected from -CI, -F, -OCH3 and -OCH2CH3 ; and when R is -CN then R is selected from
-CI, -F, -OCH3 and -OCH2CH3. Preferably, when R3b is -CN then R3a is selected from -F and
4b 4a
-OCH3 ; and when R is -CN then R is selected from -F and -OCH3.
In another embodiment are compounds of Formulas I or II, and Embodiments A, B, C or
4a
25 D and the pharmaceutically acceptable salts thereof wherein R is tetrazolyl.
MRL-ACV-00045
In another embodiment are compounds of Formulas I or II, and Embodiments A, B, C or
a b
D and the pharmaceutically acceptable salts thereof wherein R and R are each independently selected from the group consisting of -H, -F, -CI, -CH3 optionally substituted with 1 to 3 of-F, and -OCH3 optionally substituted with 1 to 3 of -F; and more particularly -H, -F, and -CH3.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
D and the pharmaceutically acceptable salts thereof wherein RAA and RBB are each independently
-H or -F; and more particularly both are -H.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or c d
D and the pharmaceutically acceptable salts thereof wherein R and R are each independently
10 selected from the group consisting of -H, -F, -CI, -CH3 optionally substituted with 1 to 3 of -F, and -OCH3 optionally substituted with 1 to 3 of -F; and more particularly -H, -F, and -CH3,
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or D and the pharmaceutically acceptable salts thereof wherein X, X1, Y and Y1 are each -H.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
15 D and the pharmaceutically acceptable salts thereof wherein R5 and R6 are selected from -H and -CH3.
In another embodiment are compounds of Formula I and the pharmaceutically acceptable salts thereof wherein X1 is joined together with Z1 and the carbon to which both are attached to form a fused ring system.
20 In another embodiment are compounds of Formula I and the pharmaceutically acceptable salts thereof wherein RS is joined together with Ί and the intervening carbons to which each is attached to form a fused ring system.
In another embodiment are compounds of Formulas I or Π, and Embodiments A, B, C or
1 . 2 D and the pharmaceutically acceptable salts thereof wherein Y is joined together with Z and
25 the carbon to which both are attached to form a fused ring system. In a class of this embodiment, the fus
In another embodiment are compounds of Formulas I or II, and Embodiments A, B, C or D and the pharmaceutically acceptable salts thereof wherein R6 is joined together with Z? and the intervening carbons to which each is attached to form a fused ring system. In a class of this embodiment, the fused ring system is:
MRL-ACV-00045
As used herein except if noted otherwise, "alkyl" is intended to include both branched- and straight-chain saturated aliphatic hydrocarbon groups having the specified number of carbon atoms. Commonly used abbreviations for alkyl groups are used throughout the 5 specification. For example the term "C1-6 alkyl" (or "Ci-Ce alkyl"), means linear or branched chain alkyl groups, including all isomers, having the specified number of carbon atoms and includes all of the hexyl and pentyl isomers as well as «-, iso-, sec- and ferf-butyl (butyl, i-butyl, !-buryl, /-butyl; Bu = butyl), n- and ί-propyl (Pr = propyl), ethyl (Et) and methyl (Me).
"Cycloalkyl" is a cyclized alkyl ring having the indicated number of carbon 10 atoms. Examples of cycloalkyl include cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
The cycloalkyl ring may be substituted on any available carbon which results in the creation of a stable structure, including the ring carbon which serves as the point of attachment to the rest of the molecule.
In some instances the number of substituents which may be optionally present on
15 a moiety is specified, for example but not limited to, 1 to 3 of -F (fluoro). For example, an alkyl group that can be optionally substituted with 1-3 of -F includes, but is not limited to, -CH3, -CH2F, -CHF2, -CF3, -CH2CH3, -CH2-CH2F -CH2-CHF2, -CHF-CH2F, -CH2CF3, -CHF- CHF2, -(CH2)2CH3) -CH(CF3)-CH3, -(CH2)3-CF3) -(CH2)2CH(CF3)CH3, and -(CH2)5-CF3, as appropriate for the defined number of carbon atoms for the given alkyl group.
20 Halo or halogen refers to -F (fluoro), -CI (chloro), -Br (bromo) and -I (iodo).
Preferred halogens are -F and -CI.
Unless expressly depicted or described otherwise, variables depicted in a structural formula with a "floating" bond, such as each of substituents Ra Rb, Re, d; Re and Rf in structural Formulas I and II, are permitted on any available carbon atom in the ring to which
25 each is attached.
The present invention encompasses all stereoisomeric forms of the compounds of Formula I. Centers of asymmetry that are present in the compounds of Formula I can all independently of one another have (R) configuration or (S) configuration. When bonds to the chiral carbon are depicted as straight lines in the structural Formulas of the invention, it is
30 understood that both the (R) and (S) configurations of the chiral carbon, and hence both
enantiomers and mixtures thereof, are embraced within the Formula. Similarly, when a compound name is recited without a chiral designation for a chiral carbon, it is understood that both the (R) and (S) configurations of the chiral carbon, and hence individual enantiomers and mixtures thereof, are embraced by the name. The production of specific stereoisomers or
MRL-ACV-000 5 mixtures thereof may be identified in the Examples where such stereoisomers or mixtures were obtained, but this in no way limits the inclusion of all stereoisomers and mixtures thereof from being within the scope of this invention.
The invention includes all possible enantiomers and diastereomers and mixtures 5 of two or more stereoisomers, for example mixtures of enantiomers and/or diastereomers, in all ratios. Thus, enantiomers are a subject of the invention in enantiomerically pure form, both as levorotatory and as dextrorotatory antipodes, in the form of racemates and in the form of mixtures of the two enantiomers in all ratios. In the case of a cis/trans isomerism the invention includes both the cis form and the trans form as well as mixtures of these forms in all ratios. The
10 preparation of individual stereoisomers can be carried out, if desired, by separation of a mixture by customary methods, for example by chromatography or crystallization, by the use of stereochemical^ uniform starting materials for the synthesis or by stereoselective synthesis. Optionally a derivatization can be carried out before a separation of stereoisomers. The separation of a mixture of stereoisomers can be carried out at an intermediate step during the
15 synthesis of a compound of Formula I or it can be done on a final racemic product. Absolute stereochemistry may be determined by X-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing a stereogenic center of known configuration. Where compounds of this invention are capable of tautomerization, all individual tautomers as well as mixtures thereof are included in the scope of this invention. The
20 present invention includes all such isomers, as well as salts, solvates (including hydrates) and solvated salts of such racemates, enantiomers, diastereomers and tautomers and mixtures thereof.
Reference to the compounds of this invention as those of a specific formula or embodiment, e.g., Formula I and II and embodiments thereof, or any other generic structural formula or specific compound described or claimed herein, is intended to encompass the specific
25 compound or compounds falling within the scope of the formula or embodiment, including salts thereof, particularly pharmaceutically acceptable salts, solvates of such compounds and solvated salt forms thereof, where such forms are possible unless specified otherwise.
In the compounds of Formula I, the atoms may exhibit their natural isotopic abundances, or one or more of the atoms may be artificially enriched in a particular isotope
30 having the same atomic number, but an atomic mass or mass number different from the atomic mass or mass number predominantly found in nature. The present invention is meant to include all suitable isotopic variations of the compounds of Formula I. For example, different isotopic forms of hydrogen (H) include protium (lH) and deuterium (2H). Protium is the predominant hydrogen isotope found in nature. Enriching for deuterium may afford certain therapeutic
35 advantages, such as increasing in vivo half-life or reducing dosage requirements, or may provide a compound useful as a standard for characterization of biological samples. Isotopically- enriched compounds within Formula I can be prepared without undue experimentation by conventional techniques well known to those skilled in the art or by processes analogous to those
RL-ACV-00045 described in the Schemes and Examples herein using appropriate isotopically-enriched reagents and/or intermediates.
When the compounds of Formula I contain one or more acidic or basic groups the invention also includes the corresponding physiologically or toxicologically acceptable salts, in 5 particular the pharmaceutically utilizable salts. Thus, the compounds of Formula I which contain acidic groups can be used according to the invention, for example, as alkali metal salts, alkaline earth metal salts or as ammonium salts. Examples of such salts include but are not limited to sodium salts, potassium salts, calcium salts, magnesium salts or salts with ammonia or organic amines such as, for example, ethylamine, ethanolamine, triethanolamine or amino acids.
10 Compounds of Formula I which contain one or more basic groups, i.e. groups which can be protonated, can be used according to the invention in the form of their acid addition salts with inorganic or organic acids as, for example but not limited to, salts with hydrogen chloride, hydrogen bromide, phosphoric acid, sulfuric acid, nitric acid, benzenesulfonic acid, methanesulfonic acid, p-toluenesulfonic acid, naphthalenedisulfonic acids, oxalic acid, acetic
15 acid, trifluoroacetic acid, tartaric acid, lactic acid, salicylic acid, benzoic acid, formic acid, propionic acid, pivalic acid, diethylacetic acid, malonic acid, succinic acid, pimelic acid, fumaric acid, maleic acid, malic acid, sulfaminic acid, phenylpropionic acid, gluconic acid, ascorbic acid, isonicotinic acid, citric acid, adipic acid, etc. If the compounds of Formula I simultaneously contain acidic and basic groups in the molecule the invention also includes, in addition to the salt
20 forms mentioned, inner salts or betaines (zwitterions). Salts can be obtained from the compounds of Formula I by customary methods which are known to the person skilled in the art, for example by combination with an organic or inorganic acid or base in a solvent or dispersant, or by anion exchange or cation exchange from other salts. The present invention also includes all salts of the compounds of Formula I which, owing to low physiological compatibility, are not directly
25 suitable for use in pharmaceuticals but which can be used, for example, as intermediates for chemical reactions or for the preparation of physiologically (i.e., pharmaceutically) acceptable salts.
Furthermore, compounds of the present invention may exist in amorphous form and/or one or more crystalline forms, and as such all amorphous and crystalline forms and mixtures
30 thereof of the compounds of Formula I are intended to be included within the scope of the present invention. In addition, some of the compounds of the instant invention may form solvates with water (i.e., a hydrate) or common organic solvents. Such solvates and hydrates, particularly the pharmaceutically acceptable solvates and hydrates, of the instant compounds are likewise encompassed within the scope of this invention, along with un-solvated and anhydrous
35 forms.
Any pharmaceutically acceptable pro-drug modification of a compound of this invention which results in conversion in vivo to a compound within the scope of this invention is also within the scope of this invention. For example, esters can optionally be made by esterification
MM<-ACV-00045 of an available carboxylic acid group or by formation of an ester on an available hydroxy group in a compound. Similarly, labile amides can be made. Pharmaceutically acceptable esters or amides of the compounds of this invention may be prepared to act as pro-drugs which can be hydrolyzed back to an acid (or -COO- depending on the pH of the fluid or tissue where 5 conversion takes place) or hydroxy form particularly in vivo and as such are encompassed within the scope of this invention. Examples of pharmaceutically acceptable pro-drug modifications include, but are not limited to, -C1-6alkyl esters and -Ci-6alkyl substituted with phenyl esters.
Accordingly, the compounds within the generic structural formulas, embodiments and specific compounds described and claimed herein encompass salts, all possible stereoisomers
10 and tautomers, physical forms (e.g., amorphous and crystalline forms), solvate and hydrate forms thereof and any combination of these forms, as well as the salts thereof, pro-drug forms thereof, and salts of pro-drug forms thereof, where such forms are possible unless specified otherwise.
The compounds of Formula I according to the invention are inhibitors of ROMK, and are therefore useful as diuretic and/or natriuretic agents. ROMK inhibitors help to increase urination
15 and increase urine volume and also to prevent or reduce reabsorption of sodium in the kidneys leading to increased excretion of sodium and water. Therefore, the compounds are useful for treatment or prophylaxis of disorders that benefit from increased excretion of water and sodium from the body. Accordingly, an object of the instant invention is to provide a method for inhibiting ROMK comprising administering a compound of Formula I in a ROMK-inhibitory
20 effective amount to a patient in need thereof. The inhibition of ROMK by the compounds of Formula I can be examined, for example, in any of the activity assays described below. Another object is to provide a method for causing diuresis, natriuresis or both, comprising administering a compound of Formula I in a therapeutically effective amount to a patient in need thereof.
Due to their activity as diuretics and natriuretic agents, this invention further provides the
25 use of compounds of Formula I in methods for treatment of, prevention of or reduction of risk for developing medical conditions that benefit from increased excretion of water and sodium, such as but not limited to one or more of hypertension, heart failure (both acute and chronic, also known as congestive heart failure) and/or other conditions resulting from excessive salt and water retention. It further includes the use of the compounds of Formula I in methods for
30 treatment of, prevention of or reduction of risk for developing one or more disorders such as pulmonary arterial hypertension (PAH), cardiovascular disease, diabetes, endothelial dysfunction, diastolic dysfunction, stable and unstable angina pectoris, thromboses, restenosis, myocardial infarction, stroke, cardiac insufficiency, pulmonary hypertonia, atherosclerosis, hepatic cirrhosis, ascitis, pre-eclampsia, cerebral edema, nephropathy, nephrotic syndrome, acute
35 and chronic kidney insufficiency, hypercalcemia, Dent's disease, Meniere's disease, edetamous states, and other conditions for which a diuretic would have therapeutic or prophylactic benefit. The compounds of the invention can be administered to a patient having, or at risk of having, one
MRL-ACV-00045 or more conditions for which a diuretic would have therapeutic or prophylactic benefit such as those described herein.
In general, compounds that are ROMK inhibitors can be identified as those compounds which, when tested, have an IC50 of 5 μΜ or less, preferably 1 μΜ or less, and
5 more preferably 0.25 μΜ or less, in at least one of the following assays: 1) the 86Rb+ Efflux Assay and 2) the Thallium Flux Assay. These assays are described in more detail further below.
The dosage amount of the compound to be administered depends on the individual case and is, as is customary, to be adapted to the individual circumstances to achieve an optimum effect. Thus, it depends on the nature and the severity of the disorder to be treated,
10 and also on the sex, age, weight and individual responsiveness of the human or animal to be treated, on the efficacy and duration of action of the compounds used, on whether the therapy is acute or chronic or prophylactic, or on whether other active compounds are administered in addition to compounds of Formula I. A consideration of these factors is well within the purview of the ordinarily skilled clinician for the purpose of determining the therapeutically effective or
15 prophylactically effective dosage amount needed to prevent, counter, or arrest the progress of the condition. It is expected that the compound will be administered chronically on a daily basis for a length of time appropriate to treat or prevent the medical condition relevant to the patient, including a course of therapy lasting days, months, years or the life of the patient.
In general, a daily dose of approximately 0.001 to 100 mg/kg, preferably 0.001 to 30
20 mg kg, in particular 0.001 to 10 mg/kg (in each case mg per kg of bodyweight) is appropriate for administration to an adult weighing approximately 75 kg in order to obtain the desired results. The daily dose is preferably administered in a single dose or, in particular when larger amounts are administered, can be divided into several, for example two, three or four individual doses, and may be, for example but not limited to, 0.1 mg, 0.25 mg, 0.5 mg, 0.75 mg, 1 mg, 1.25 mg,
25 2.5 mg, 5 mg, 10 mg, 20 mg, 40 mg, 50 mg, 75 mg, 100 mg, etc., on a daily basis. In some cases, depending on the individual response, it may be necessary to deviate upwards or downwards from the given daily dose. Furthermore, the compound may be formulated for immediate or modified release such as extended or controlled release.
The term "patient" includes animals, preferably mammals and especially humans, who
30 use the instant active agents for the prohhylaxis or treatment of a medical condition.
Administering of the drug to the patient includes both self-administration and administration to the patient by another person. The patient may be in need of treatment for an existing disease or medical condition, or may desire prophylactic treatment to prevent or reduce the risk for developing said disease or medical condition or developing long-term complications from a
35 disease or medical condition.
The term therapeutically effective amount is intended to mean that amount of a drug or pharmaceutical agent that will elicit the biological or medical response of a tissue, a system, animal or human that is being sought by a researcher, veterinarian, medical doctor or other
MRL-ACV-00045 clinician. A prophylactically effective amount is intended to mean that amount of a pharmaceutical drug that will prevent or reduce the risk of occurrence of the biological or medical event that is sought to be prevented in a tissue, a system, animal or human by a researcher, veterinarian, medical doctor or other clinician. It is understood that a specific daily 5 dosage amount can simultaneously be both a therapeutically effective amount, e.g., for treatment of hypertension, and a prophylactically effective amount, e.g., for prevention or reduction of risk of myocardial infarction or prevention and reduction of risk for complications related to hypertension.
In the methods of treatment of this invention, the ROMK inhibitors may be administered
10 via any suitable route of administration such as, for example, orally, parenterally, or rectally in dosage unit formulations containing conventional non-toxic pharmaceutically acceptable carriers, adjuvants and vehicles. The term parenteral as used herein includes subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques. Oral formulations are preferred, particularly solid oral dosage units such as pills, tablets or capsules.
15 Accordingly, this invention also provides pharmaceutical compositions comprised of a compound of Formula I and a pharmaceutically acceptable carrier. For oral use, the pharmaceutical compositions of this invention containing the active ingredient may be in forms such as pills, tablets, troches, lozenges, aqueous or oily suspensions, dispersible powders or granules, emulsions, hard or soft capsules, or syrups or elixirs. Compositions intended for oral
20 use may be prepared according to any method known to the art for the manufacture of
pharmaceutical compositions and such compositions may contain one or more agents selected from the group consisting of sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide pharmaceutically elegant and palatable preparations. Tablets contain the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients, which
25 are suitable for the manufacture of tablets. These excipients may be for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, mannitol, calcium phosphate or sodium phosphate; granulating and disintegrating agents, for example, corn starch, or alginic acid; binding agents, for example starch, gelatin or acacia, and lubricating agents, for example, magnesium stearate, stearic acid or talc.
30 Pharmaceutical compositions may also contain other customary additives, for example, wetting agents, stabilizers, emulsifiers, dispersants, preservatives, sweeteners, colorants, flavorings, aromatizers, thickeners, diluents, buffer substances, solvents, solubilizers, agents for achieving a depot effect, salts for altering the osmotic pressure, coating agents or antioxidants.
Oral immediate-release and time-controlled release dosage forms may be employed, as
35 well as enterically coated oral dosage forms. Tablets may be uncoated or they may be coated by known techniques for aesthetic purposes, to mask taste or for other reasons. Coatings can also be used to delay disintegration and absorption in the gastrointestinal tract and thereby provide a
MRL-ACV-00045 sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate may be employed.
Formulations for oral use may also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium 5 phosphate or kaolin, or as soft gelatin capsules wherein the active ingredients is mixed with water or miscible solvents such as propylene glycol, PEGs and ethanol, or an oil medium, for example peanut oil, liquid paraffin, or olive oil.
Aqueous suspensions contain the active material in admixture with excipients suitable for the manufacture of aqueous suspensions. Oily suspensions may be formulated by suspending the
10 active ingredient in a vegetable oil, for example arachis oil, olive oil, sesame oil or coconut oil, or in mineral oil such as liquid paraffin. The oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents and flavoring agents may be added to provide a palatable oral preparation. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid. Syrups and elixirs may be formulated with
15 sweetening agents, for example glycerol, propylene glycol, sorbitol or sucrose.
The instant invention also encompasses a process for preparing a pharmaceutical composition comprising combining a compound of Formula I with a pharmaceutically acceptable carrier. Also encompassed is the pharmaceutical composition which is made by combining a compound of Formula I with a pharmaceutically acceptable carrier. The carrier is comprised of
20 one or more pharmaceutically acceptable excipients. Furthermore, a therapeutically effective amount of a compound of this invention can be used for the preparation of a medicament useful for inhibiting ROMK, for causing diuresis and/or natriuresis, and/or for treating, preventing or reducing the risk for any of the medical conditions described herein, in dosage amounts described herein.
25 The amount of active compound of Formula I and/or its pharmaceutically acceptable salts in the pharmaceutical composition may be, for example but not limited to, from 0.1 to 200 mg, preferably from 0.1 to 50 mg, per dose on a free acid/free base weight basis, but depending on the type of the pharmaceutical composition and potency of the active ingredient it could also be lower or higher. Pharmaceutical compositions usually comprise 0.5 to 90 percent by weight of
30 the active compound on a free acid/free base weight basis.
The compounds of Formula I inhibit ROMK. On account of this property, apart from use as pharmaceutically active compounds in human medicine and veterinary medicine, they can also be employed as a scientific tool or as aid for biochemical investigations in which such an effect on ROMK is intended, and also for diagnostic purposes, for example in the in vitro diagnosis of
35 cell samples or tissue samples. The compounds of Formula I can also be employed as
intermediates for the preparation of other pharmaceutically active compounds.
One or more additional pharmacologically active agents may be administered in combination with a compound of Formula I. An additional active agent (or agents) is intended to
MRL-ACV-000 5 mean a pharmaceutically active agent (or agents) different from the compound of Formula I. Generally, any suitable additional active agent or agents, including but not limited to antihypertensive agents, anti-atherosclerotic agents such as a lipid modifying compound, antidiabetic agents and/or anti-obesity agents may be used in any combination with the compound of 5 Formula I in a single dosage formulation (a fixed dose drug combination), or may be
administered to the patient in one or more separate dosage formulations which allows for concurrent or sequential administration of the active agents (co-administration of the separate active agents). Examples of additional active agents which may be employed include but are not limited to angiotensin converting enzyme inhibitors (e.g, alacepril, benazepril, captopril,
10 ceronapril, cilazapril, delapril, enalapril, enalaprilat, fosinopril, imidapril, lisinopril, moveltipril, perindopril, quinapril, ramipril, spirapril, temocapril, or trandolapril), angiotensin II receptor antagonists also known as angiotensis receptor blockers or ARBs (e.g., losartan i.e., COZAAR®, valsartan, candesartan, olmesartan, telmesartan and any of these drugs used in combination with hydrochlorothiazide such as HYZAAR®), neutral endopeptidase inhibitors (e.g., thiorphan and
15 phosphoramidon), aldosterone antagonists, renin inhibitors (e.g. urea derivatives of di- and tri- peptides (See U.S. Pat. No. 5,116,835), amino acids and derivatives (U.S. Patents 5,095,119 and 5,104,869), amino acid chains linked by non-peptidic bonds (U.S. Patent 5,114,937), di- and tri- peptide derivatives (U.S. Patent 5,106,835), peptidyl amino diols (U.S. Patents 5,063,208 and 4,845,079) and peptidyl beta-aminoacyl aminodiol carbamates (U.S. Patent 5,089,471); also, a
20 variety ofother peptide analogs as disclosed in the following U.S. Patents 5,071,837; 5,064,965;
5,063,207; 5,036,054; 5,036,053; 5,034,512 and 4,894,437, and small molecule renin inhibitors (including diol sulfonamides and sulfinyls (U.S. Patent 5,098,924), N-morpholino derivatives (U.S. Patent 5,055,466), N-heterocyclic alcohols (U.S. Patent 4,885,292) and pyrolimidazolones (U.S. Patent 5,075,451); also, pepstatin derivatives (U.S. Patent 4,980,283) and fluoro- and
25 chloro-derivatives of statone-containing peptides (U.S. Patent 5,066,643), enalkrein, RO 42- 5892, A 65317, CP 80794, ES 1005, ES 8891, SQ 34017, aliskiren (2(S),4(S),5(S),7(S)-N-(2- carbamoyl-2-methylpropyl 5-amino-4-hydroxy-2,7-diisopropyl-8-[4-methoxy-3-(3- methoxypropoxy)-phenyl]-octanamid hemifumarate) SPP600, SPP630 and SPP635), endothelin receptor antagonists, vasodilators (e.g. nitroprusside), calcium channel blockers (e.g.,
30 amlodipine, nifedipine, veraparmil, diltiazem, gallopamil, niludipine, nimodipins, nicardipine), potassium channel activators (e.g., nicorandil, pinacidil, cromakalim, minoxidil, aprilkalim, loprazolam), diuretics (e.g., hydrochlorothiazide), sympatholitics, beta-adrenergic blocking drugs (e.g., propranolol, atenolol, bisoprolol, carvedilol, metoprolol, or metoprolol tartate), alpha adrenergic blocking drugs (e.g., doxazocin, prazocin or alpha methyldopa) central alpha
35 adrenergic agonists, peripheral vasodilators (e.g. hydralazine), lipid lowering agents (e.g., HMG- CoA reductase inhibitors such as simvastatin, lovastatin, pravastatin, atorvastatin, pitavastatin and rosuvastatin, and cholesterol absorption inhibitors such as ezetimibe); niacin in immediate- release or controlled release forms, and particularly niacin in combination with a DP antagonist
MRL-ACV-00045 such as laropiprant (TREDAPTIVE®) and/or with an HMG-CoA reductase inhibitor; niacin receptor agonists such as acipimox and acifran, as well as niacin receptor partial agonists; metabolic altering agents including insulin sensitizing agents and related compounds for the treatment of diabetes such as biguanides (e.g., metformin), meglitinides (e.g., repaglinide, 5 nateglinide), sulfonylureas (e.g., chlorpropamide, glimepiride, glipizide, glyburide, tolazamide, tolbutamide), thiazolidinediones also referred to as glitazones (e.g., pioglitazone, rosiglitazone), alpha glucosidase inhibitors (e.g., acarbose, miglitol), dipeptidyl peptidase inhibitors, e.g., (sitagliptin (JANUVIA®) and saxagliptin), ergot alkaloids (e.g., bromocriptine), combination medications such as JANUMET® (sitagliptin with metformin), and injectable diabetes 10 medications such as exenatide and pramlintide acetate; or with other drugs beneficial for the prevention or the treatment of the above-mentioned diseases including but not limited to diazoxide.
Several methods for preparing the compounds of this invention are described in the following Schemes and Examples. Starting materials and intermediates are purchased, made 15 from known procedures, or as otherwise illustrated. The Ar group shown in the below schemes can represent any of the substituted aromatic or substituted heterocyclic groups found in Z1 or Z' as defined previously.
In general, synthesis of the covered compounds starts with alkylation of electrophile 1-1 (such as bromide, iodide, mesylatem or tosylate) with N-Boc protected piperazine (1-2) under 20 basic conditions. The Boc protecting group (Greene, T.; Wuts, P. G. M. protective Groups in Organic Synthesis, John Wiley and Sons, Inc., New York, NY 1991 ) of 1-3 can be removed under acidic conditions, such as with TFA or HCI. The resulting piperazine 1-4 was alkylated for a second time with the corresponding electrophile (E) 1-5 to yield the product 1-6.
Scheme 1
1-4 1-5 1-6
25 Alternatively, the alkylation can be achieved under reductive amination conditions with the corresponding aldehyde or ketone using NaCNCH3 or Na(OAc)3BH (Scheme 2). Some
MRL-ACV-00045 compounds were made via a combination of the two alkylation methods, depending on whether the electrophile or aldehyde (ketone) is more easily accessible.
Scheme 2
1-4 2-2 1-6
In instances where the compounds are symmetrical, the final product may be prepared in one single step via a double alkylation or reductive amination with piperazine 3-1 (Scheme 3).
2-1 3-1 1-6
Finally, intermediate 1-3 can also be prepared via a one pot ozonolysis - reductive amination method, when amine 4-1 is more easily accessible (Scheme 4). In this operation, tert- butyl diallylcarbamate 4-2 was first treated under ozonolysis conditions, which was followed by 10 addition of amine 4-1 , triethylamine, and Na(OAc)3BH. Further stirring of the reaction gave rise to intermediate 1-3. Removal of the Boc group gave rise to 1-4, which was further alkylated to furnish the final compound.
MRL-ACV-00045
Scheme 4
■ 1-5 1-6
Procedures for making compounds having bridged piperazines are described
Examples.
General Procedures:
5 Reactions sensitive to moisture or air were performed under nitrogen or argon using anhydrous solvents and reagents. The progress of reactions was determined by either analytical thin layer chromatography (TLC) usually performed with E. Merck precoated TLC plates, silica gel 60F-254, layer thickness 0.25 mm or liquid chromatography-mass spectrometry (LC-MS). Typically the analytical LC-MS system used consisted of a Waters ZQ platform with electrospray
10 ionization in positive ion detection mode with an Agilent 1100 series HPLC with autosampler.
The column was usually a Water Xterra MS C 18, 3.0 χ 50 mm, 5 μια. The flow rate was 1 mL/min, and the injection volume was l0μL. UV detection was in the range 210-400 nm. The mobile phase consisted of solvent A (water plus 0.06% TFA) and solvent B (acetonitrile plus 0.05% TFA) with a gradient of 100% solvent A for 0.7 min changing to 100% solvent B over
15 3.75 min, maintained for 1.1 min, then reverting to 100% solvent A over 0.2 min.
Preparative HPLC purifications were usually performed using a mass spectrometry directed system. Usually they were performed on a Waters Chromatography Workstation configured with LC-MS System Consisting of: Waters ZQ single quad MS system with Electrospray Ionization, Waters 2525 Gradient Pump, Waters 2767 Injector / Collector, Waters 996 PDA Detetor, the MS
20 Conditions of: 150-750 amu, Positive Electrospray, Collection Triggered by MS, and a Waters Sunfire C-18 5 micron, 30 mm (id) x 100 mm column. The mobile phases consisted of mixtures of acetonitrile (10-100%) in water containing 0.1%TFA. Flow rates were maintained at 50 mL/min, the injection volume was 1800 L, and the UV detection range was 210-400 nm. Mobile phase gradients were optimized for the individual compounds. Reactions perfomed using
25 microwave iradiation were normally carried out using an Emrys Optimizer manufactured by Personal Chemistry, or an Initiator manufactured by Biotage. Concentration of solutions was carried out on a rotary evaporator under reduced pressure. Flash chromatography was usually
MRL-ACV-00045 performed using a Biotage Flash Chromatography apparatus (Dyax Corp.) on silica gel (32-63 mM, 60 A pore size) in pre-packed cartridges of the size noted. H NM spectra were acquired at 500 MHz spectrometers in CDC13 solutions unless otherwise noted. Chemical shifts were reported in parts per million (ppm). Tetramethylsilane (TMS) was used as internal reference in 5 CD3CI solutions, and residual CH3OH peak or TMS was used as internal reference in CD3OD solutions. Coupling constants (J) were reported in hertz (Hz). Chiral analytical chromatography was performed on one of Chiralpak AS, Chiralpak AD, Chiralcel OD, Chiralcel IA, or Chiralcel OJ columns (250x4.6 mm) (Daicel Chemical Industries, Ltd.) with noted percentage of either ethanol in hexane (%Et/Hex) or isopropanol in heptane (%IP A/Hep) as isocratic solvent systems.
10 Chiral preparative chromatography was conducted on one of Chiralpak AS, Chiralpak AD,
Chiralcel OD, Ciralcel IA, or Chiralcel OJ columns (20x250 mm) (Daicel Chemical Industries, Ltd.) wit desired isocratic solvent systems identified on chiral analytical chromatography or by supercritical fluid (SFC) conditions.
Abbreviations used herein include: -C(0)C¾ (Ac); acetic acid (AcOH; HOAc);
15 -OC(0)CH3 (OAc); aqueous (aq); benzyloxycarbonyl (Cbz); (dba) dibenzylideneacetone; iTO(dibenzylidineacetone)dipalladium (Pd2(dba)3); AyV-diisopropylethylamine (DIPEA); N;N- dimethylformamide (DMF); dimethylsulfide (DMS); l,l'-&w(diphenylphosphino)ferrocene (dppf , DPPF); ethyl acetate (EtOAc); diethyl ether (ether or Et20); petroleum ether (PE); gram(s) (g); hexane (Hex); hour(s) (h or hr); hexamethylphosphoramide (HMPA); high pressure liquid
20 chromatography (HPLC); 2-propanol (IP A); lithium diisopropylamide (LDA); mass spectrum (ms or MS); microliter(s) (μί); milligram(s) (mg); milliliters) (mL); millimole (mmol);
minute(s) (min); methyl t-butylether (MTBE); medium pressure liquid chromatography (MPLC); N-methylmorpholine-N-oxide ( MO); phenyl (Ph);
tetrakis(triphenylphosphine)palladium (Pd(PPh3)4); /rii(dibenzylidineacetone)dipalladium 25 (Pd2(dba)3); (benzotriazol-l-yloxy)tripyrrolidino-phosphonium hexafluorophosphate (PyBOP); retention time (Rj); room temperature (rt or RT); saturated aq sodium chloride solution (brine); triethylamine (TEA); trifluoroacetic acid (TFA); tetrahydrofuran (THF); flash chromatography (FC); liquid chromatography (LC); liquid chromatography-mass spectrometry (LCMS or LC- MS); supercritical fluid chromatography (SFC); f-butyloxycarbonyl (Boc or BOC);
30 Diethylaminosulfur trifluoride (DAST); dichloromethane (DCM); dimethylacetamide (DMA;
DMAC); dimethylsulfoxide (DMSO); 1,3-Bis(diphenylphosphino)propane (DPPP); acetic acid (HOAc); 3-chloroperoxybenzoic acid (m-CPBA); methyl (Me); methanol (MeOH); N- bromosuccinamide (NBS); thin layer chromatography (TLC).
The following are representative procedures for the preparation of the compounds used in 35 the following Examples, or which can be substituted for the compounds used in the following Examples which may not be commercially available.
INTERMEDIATE 1
MRL-ACV-00045
1 - [2-(4-NitrophenvDethyl1piperazine hydrochloride :
To a solution of N-Boc piperazine (2.8 g, 15 mmol) and l-(2-bromoethyl)-4-nitrobenzene (3.5 g, 15 mmol) in DMF (75 mL) was added TEA (4.7 mL, 34 mmol) at RT. The mixture was heated 5 to 60 °C for 16 hours. The crude mixture was diluted with EtOAc, washed with 0.1 N HCI and brine, dried over sodium sulfate, and concentrated. The product was precipitated by addition of hexane into a EtOAc solution. This solid was used in the bromination step without further purification. LC-MS (IE, m/z) 336 [M + 1]+.
The material obtained above was dissolved in dioxane, and treated with 4N HCI. LC showed 10 complete conversion within 2 hours. The solvent was removed under reduced pressure, and the resulting solid was used without further purification. LC-MS (IE, m/z): 236 [M + 1] .
6-Piperazin-l-yl-5.6.7.8-tetrahvdronaphthalene-2-carbonitrile
15 Step A: 6-0x0-5. 6. 7. 8-tetrahvdronaphthalene-2-carbonitrile
The 5-bromo-2 tetralone (2.0 g, 8.9 mmol), tetrakis(triphenylphosphine)palladium (0.62 g, 0.53 mmol) and zinc cyanide (0.73 g, 6.2 mmol) were added to 4 ml DMF in a 20 ml microwave tube. The mixture was degassed and microwaved at 80°C for 30 mins. TLC showed no starting material left and the mixture was diluted with ethyl acetate and washed with ammonium
20 hydroxide (2M, x 4 ml ). The organic layer was separated and dried over NaiS04 then filtered.
The solvent was evaporated under reduced pressure. The residue was chromatographed through 40 gm Isco Redi-sep column and eluted with 0-30% ethyl acetate- hexane to yield 6-oxo-5, 6, 7, 8-tetrahydronaphthalene-2-carbonitrile.
½-NMR (500 MHz, CDC13) δ ppm 7.57 (s,lH), 7.54 (d, J= 8.Hz, 1H), 7.26( d, J= 8.Hz, 1H),
25 3.67(s, 2H) , 3.14 (t, J= 6.7.Hz, 2H), 2.63( t, /= 6.7.Hz, 2H).
StepB : tert -Butyl 4-(6-cvano- 1.2.3■4-tetrahvdronaphthalen-2-yl')pipeTazine- 1 -carboxylate
Titanium (TV) isopropoxide (0.21 ml, 0.73 mmol), 6-oxo-5, 6, 7, 8-tetrahydronaphthalene-2- carbonitrile (lOOmg, 0.58 mmol), and teri-butyl piperazine-l-carboxylate(l 10 mg, 0.58 mmol) were stirred at room temperature. After 1 hour, ethanol (10 ml) and sodium cyanoborohydride
30 (25.7 mg, 0.409 mmol) were added to the mixture and stirred for 16 hrs. LC-MS showed
incomplete formation of product. More sodium cyanoborohydride (77 mg, 1.23 mmol) and 2 drops of HO Ac were added and stirred overnight. The reaction was poured into sat'd NaHC03 and extracted with ethyl acetate. The ethyl acetate layer was washed with brine then dried over
MRJL-ACV-00045
MgS04, filtered and evaporated to dryness. The residue was purified by prep-TLC plate using 50:50 EtOAc.Hexane solvent system.. Tert-butyl 4-(6-cyano-l, 2, 3, -tetrahydronaphthalen-2-yl) piperazine-l-carboxylate was isolated. LC-MS (IE, m/z): 342 [M + 1]+, ½-NMR (500 MHz, DMSO) 5 ppm 7.54 (s,lH), 7.51 (d, J= 8.Hz, 1H), 7.21( d, /= 8.Hz, 1H), 3.31-3.28(m, 4H) ,
5 2.67-2.93(m, 5H), 2.46-2.62( m, 4H), 1.97 (b, 1H), 1.5-1.60 (m, 1H), 1.38 (s, 9H).
Step C: 6-Piperazin-l-vI-5.6.7.8-tetrahvdronaphthalene-2-carbonitrile
Tert-butyl 4-(6-cyano-l, 2, 3, 4-tetrahydronaphthalen-2-yl) piperazine-l-carboxylate (1 lOmg, 0.32 mmol) was stirred in trifluoroacetic acid (2 ml, 26.0 mmol) at RT overnight. The excess trifluoroacetic acid was then evaporated off under high vacuum. The resulting solid was used
10 without further purification. LC-MS (ΓΕ, m/z): 242 [M + 1]+.
Π -Oxo-1.3-dihvdro-2-benzofuran-5-yl)acetaldehvde
Step A: 5-("l,3-Dioxolan-2-ylmethyl)-2-benzofuran-l(3/iA-one
15 A three-neck 5L round bottomed flask equipped with a stir bar, firestone valve, thermocouple, condenser and heating mantle was charged with tri-t-butyl phosphonium tetrafluoroborate (500 mg, 1.72 mmol), palladium (II) acetate (250 mg, 1.1 mmol) and 5-bromo-2-benzofuran-l(3H)- one (100 g, 470 mmol). DMF (1.88 L) was added to the flask, and the mixture was degassed three times by alternating vacuum and nitrogen purge. Commercially available bromo(l,3-
20 dioxolan-2-ylmethyl)zinc solution (1.03 L, 516 mmol) was added via canula and the mixture was again degassed three times. The mixture was then heated at 85 °C for 5 h. Analysis by HPLC- MS indicated the reaction was not complete. The mixture was stirred at 85 °C for 5 more h. The mixture was then allowed to return to room temperature for overnight. 2-methylTHF (2L) and brine were added, and the mixture was stirred for 5 min. The layers were separated and the
25 aqueous layer was extracted again with 2-methylTHF. The organic layers were combined, washed three times with brine (4L each), dried over MgS04, filtered, and concentrated. The crude product was purified by flash chromatography (1.5 kg silica cartridge), eluting with 0-20% ethyl acetate in dichlromethane to afford 5-(l,3-dioxolan-2-ylmethyl)-2-benzofuran-l(3/ )-one. LC-MS (IE, m/z): 221 [M+l]+.
30 Step B: (l-Oxo-1.3-dihvdro-2-benzofuran-5-yl')acetaldehvde
5-(l,3-Dioxolan-2-ylmemyl)-2-benzofuran-l(3iT)-one (61 g, 280 mmol) was combined with water (2.2 L) in a 5 L round bottomed flask equipped with a Claisen adapter, thermocouple, stir bar and nitrogen bubbler. Aqueous HC1 solution (2M, 1.14 L, 2.29 mol) was added and the resulting mixture was heated at 40 C for 8 h. Then the mixture was stirred overnight at room
35 temperature. The mixture was extracted three times with 2 L of ethyl acetate. The combined organic layers were concentrated to give (l-oxo-l,3-dihydro-2-renzofuran-5-yl)acetaldehyde.
MRL-ACV-00045
LC-MS (IE, m/z): 177 (M+l)+.
5-(2-BromoemylV2-benzoruran- 1 ( HD-one
5 Step A: 5-Allyl-2-beirzofuran-li3 )-one
A 4-neck, 22-L, round bottom flask equipped with a mechanical stirrer, thermocouple, nitrogen bubbler, and condenser was charged with 5-bromophthalide (650 g, 3.0 mol), allyltri-n-butyltin (1200 g, 3.6 mol), tetrakis(triphenylphosphine)palladium (100 g, 0.089 mol), lithium chloride (250 g, 5.9 mol) and toluene (8.8 L). The mixture was evacuated and flushed with nitrogen 3
10 times and then was stirred at 100 °C for 4 hours. After slowly cooling to ambient temperature, the mixture was filtered and concentrated. The resulting solid was purified by silica gel column chromatography (heptaneiethyl acetate, 0->40%) to provide 5-allyl-2-benzoforan-l(3 )-one. ½ NMR (500 MHz, CD3OD) δ 7.83 (d, J= 8.0 Hz, IH), 7.38 (d, J= 8.0 Hz, IH), 7.33 (s, IH), 5.98 (m, IH), 5.29 (s, 2H), 5.11-5.18 (m, 2H), 3.52 (d, = 8.2 Hz, 2H).
15 Step B: 5-(2-HvdroxyethvD-2-benzofuran-ir3HV-one
5-allyl-2-benzofuran-l(3/7)-one (1-53 g, 8.78 mmol) was dissolved in methanol (30 mL). THF was added to solubilize the starting material. The resulting mixture was cooled in a dry ice acetone bath (-78 °C) and ozone was bubbled into the reaction until the color of the mixture changed to orange. Nitrogen was bubbled into the reaction for one minute to remove the excess
20 ozone. Sodium borohydride (0.65 g, 2.9 mmol) was added at -78 °C, and the reaction mixture was allowed to warm to ambient temperature. The reaction mixture was concentrated part way and then taken up in ethyl acetate and water. The layers were separated and the organic layer was washed with brine, dried over magnesium sulfate, filtered, and concentrated to provide 5-(2- hydroxye l)-2-benzofuran-l(3J¾)-one. NMR (500 MHz, CD3OD) δ 7.77 (m, 1H), 7.37-
25 7.41 (m, 2H), 5.23 (s, 2H), 3.92 (m, 2H), 2.99 (m, 2H).
Step C: S-Q-BromoethvD^-benzofuran-USJjVone
To a solution of 5-(2-hydroxyethyl)-2-benzofuran-l(3i/)-one (1.2 g, 6.8 mmol) in DCM at 0 °C was added carbon tetrabromide (2.3 g, 6.8 mmol), triphenylphosphine (1.8 g, 6.8 mmol), and imidazole (0.46 g, 6.8 mmol). The mixture was allowed to stir at 0 °C for 5 minutes, and then 30 allowed to warm to RT and stir for 1.5 hours. The crude was concentrated and purified by silica gel chromatography (43% EtOAc with Hexanes). About 1.3 grams of 5-(2-Bromoethyl)-2- benzofuran-l(3H)-one was collected as a white solid. LC-MS (IE, m/z): 241/243 (M+l)+.
MRL-ACV-00045
5-(2-Piperazin- 1 -ylemylV2-ben¾>furan- 1 (3H)- ne hydrochloride
Step A: l.l-Dimethyleroyl-4-[2-n-oxo-13-dihydro-2-benzofura^
5 carboxylate
A three neck 5 L round bottomed flask equipped with a nitrogen bubbler, thermocouple, and stirbar was charged with (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (46.1 g, 262 mmol) and dichloromethane (1L). 1-Boc-piperazine (48.7 g, 262 mmol) in 1 L of dichloromethane was added and the mixture was stirred for 5 min. Sodium triacetoxyborohydride (111 g, 523 mmol)
10 was added in portions at room temperature and the resulting mixture was stirred for 1 h. Water (1 L) was added and the mixture was stirred for 10 min. After gas evolution subsided the organic layer was separated and the aqueous layer was extracted with methylene chloride (1 L). The organic layers were combined, washed with brine, and concentrated. The crude product was purified by silica gel MPLC eluting with a 0-100% gradient of 5% methanol/DCM solution
15 (Solvent A) to pure DCM (Solvent B) to afford l,l-dimethylethyl-4-[2-(l-oxo-l,3-dihydro-2- tenzofuran-5-yl)ethyl]piperazine-l-carboxylate.
Step B : 5-(2-Piperazin- 1 -ylethylV2-benzofuran- 1 (3H)-one hydrochloride
To 1 , 1 -dimethylethyl-4-[2-( 1 -oxo- 1 ,3 -dihydro-2-benzofuran-5-yl)ethyl]piperazine- 1 -carboxylate (120 g, 347 mmol) in dioxane (800 mL) was added 4 N HC1 in dioxane (87.0 mL, 347 mmol) 20 and the resulting mixture was stirred at room temperature over night. The reaction mixture was concentrated and stored under vacuum overnight to afford 5-(2-piperazin-l-ylethyl)-2- benzofuran-l(3/Z)-one hydrochloride. This can be used as is or converted to the free base by partitioning between an organic solvent and saturated NaHC03 solution. LC-MS (IE, m/z): 247 (M+l)+.
4-Methyl -5-(2-piperazin- 1 -vIethyn-2-benzofuran- 1 (3ff)-one hydrochloride
Step A: C3-Bromo-2-methylphenyl)methanol
To a solution of 3-bromo-2-methyl benzoic acid (35 g, 163 mmol) in THF (200 mL) was added 30 Borane THF Complex (1.0 M, 212 mL, 212 mmol). The mixture was allowed to stir for 24 h.
TLC showed one single product spot. The reaction was quenched with water. The solvent THF was removed under reduced pressure. The resulting solid was dissolved in ethyl acetate (500
MRL-ACV-00045 mL), washed with IN HC1, sodium carbonate, and brine. The organic layer was dried over sodium sulfate and concentrated to afford (3-bromo-2-methylphenyl)methanol.
Step B: S-Bromo-4-methyl-2-benzofuran-l("3ff)-one
To a flask charged with (3-bromo-2-methylphenyl)methanol (6.0 g, 30 mmol) was added a 1M 5 TFA solution of Thallium Trifluoroacetate (16.2 g, 29.8 mmol). The mixture was stirred at RT overnight. Analysis by TLC showed no starting material remaining. The solvent was removed under vacuum, and the residue was pumped under high vacuum for 30 min to ensure complete removal of TFA. To the residue was then added Palladium(II) Chloride (529 mg, 2.98 mmol), Lithium Chloride (2.53 g, 59.7 mmol), Magnesium Oxide (2.41 g, 59.7 mmol), and MeOH (150
10 mL). The reaction was flushed with CO twice, and kept under CO at room temperature.
Analysis by LC showed a big product spot within 2 hours. To this solution was added ethyl acetate to precipitate the salts. The black solution was filtered through a celite pad, washed with EtOAc, adsorbed onto silica and purified by silica gel chromatography to afford 5-bromo-4- methyl-2-benzofuran-l(3 /)-one. ½-NMR (500 MHz, CDC13) δ ppm 7.71 (d, /= 8.0 Hz, 1H),
15 7.58 (d, J = 8.0 Hz, 1H), 5.25 (s, 2H), 2.37 (s, 3H).
Step C: 4-Memyl-5-prop-2-en-l-yl-2-benzofuran-l(3 /)-one
To a flask charged with 5-bromo^-methyl-2-benzofuran-l(3i?)-one (320 mg, 1.409 mmol) and a stir bar was added allyl tri-n-butyltin (0.655 ml, 2.11 mmol), Pd(PPh3)4 (244 mg, 0.211 mmol), lithium chloride (179 mg, 4.23 mmol), and toluene (15 mL). The reaction was purged with
20 nitrogen 2 times then was heated at reflux for 4 hours. The product was separated by silica gel chromatography to give 4-methyl-5-prop-2-en-l-yl-2-benzofuran-l(3i -one.
Step D: (4-Methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl)acetaldehvde
A solution of the above olefin (220 mg, 1.2 mmol) in MeOH (20 mL) was cooled to -78 °C. To this solution was bubbled ozone until the reaction turned blue. Nitrogen was bubbled through
25 the reaction to drive off excess ozone, followed by addition of DMS (0.870 mL, 11.7 mmol).
The reaction was allowed to warm up to RT. The crude product was purified by flash chromatography to afford (4-memyl-l-oxo-l,3-dihydro-2-ben2»furan-5-yl)acetaldehyde. 'H-NMR (500 MHz, CDCI3) δ ppm 9.78 (s, 1H), 7.75 (d, J= 7.5 Hz, 1H), 7.34 (d, J= 7.5 Hz, 1H), 5.27 (s, 2H), 3.90 (s, 2H), 2.23 (s, 3H).
30 Ste E: lJ-Dimemylemyl-4-[2-f4-methyl-l-oxo-1.3-dihvdro-2-benzofuran-5- yl ethyr)piperazine- 1 -carboxylate
To a solution of (4-mediyl-l^xo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (160 mg, 0.84 mmol) and 1-Boc Piperazine (234 mg, 1.26 mmol) in MeOH (5 mL) was added NaCNBH3 (149 mg, 2.52 mmol) and a few drops of acetic acid. The reaction was allowed to stir at RT for 16 35 hours. TLC at that point showed good and complete reaction. The reaction was diluted with EtOAc (100 mL), washed with aq. NaHC03 solution and brine, dried over a2S04, adsorbed onto silica gel, and purified by MPLC. l,l-Dimethylethyl-4-[2-(4-methyl-l-oxo-l,3-dihydro-2- benzofuran-5-yl)ethyl]piperazine-l-carboxylate was collected after removal of solvents.
M L-ACV-00045
LC-MS: m/z 361 (M+l)+.
Step F: 4-Methyl-5-(2-piperazin-l-yleA^ hydrochloride
l,l-Dimemylemyl-4-[2-(4-meftyl-l-oxo-l,3-dihycto^
carboxylate (245 mg) was treated with 4N HC1 in dioxane solution and the reaction was 5 monitored until completion. The mixture was concentrated to afford 4-methyl-5-(2-piperazin-l- ylethyl)-2-benzofuran-l(3/f)-one hydrochloride. The hydrochloride can be converted to free base as needed by partitioning between organic solvent (EtOAc, DCM, or 30%IPA/CHCl3) and saturated Na2C03 solution. ½-NMR (500 MHz, DMSO) δ ppm 12.4 (broad, 1H), 9.80 (broad, 2H), 7.71 (d, /= 7.5 Hz, 1H), 5.53 (d, J= 7.5 Hz, 1H), 5.44 (s, 2H), 3.81 (m, 2H), 3.64-3.27 (m,
10 10H).
2-(4-Methyl-l-oxo-13-dihvdro-2-benzofuran-5-vDpropanal
Step A: 4-Memyl-5-prop-2-en-l-yl-2-beri2ofuran-U3J¾ )-one
15 A mixture of 5-bromo-4-memyl-2-benzofuran-l(3.H)-one (980 mg, 4.3 mmol), allyl-tributyl- stannane (1.7 g, 5.2 mmol), LiCl (550 mg, 12.9 mmol) and Pd(PPh3)4 (0.1 g) in anhydrous toluene was stirred at reflux under N2 overnight The solvent was removed under reduced pressure, and the residue was purified with silica gel column chromatography to give the product 4-methyl-5-prop-2-en-l -yl-2-benzofuran- 1 (3if)-one.
20 Step B: ^-Methyl-l-oxo-l.S-dihvdro^-benzofuran-S-vnacetic acid
To a stirred solution of 4-methyl-5-prop-2-en-l-yl-2-benzofuran-l(3ii)-one (2.10 g, 11.2 mmol) in CCI4 (50 mL), acetonitrile (50 mL) and water (75 mL) was added sodium periodate (12 g, 55.8 mmol) and ruthenium oxide hydrate (210 mg) and the resulting mixture was stirred at ambient temperature overnight. The mixture was diluted with 100 mL DCM and 100 mL of water. The
25 organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with silica gel column chromatography to afford (4-methyl-l-oxo-l,3-dihydro-2- benzofuran-5-yl)acetic acid.
Step C: 1.1-Dimethylethyl (4-methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl')acetate
To a solution of (4-memyl-l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetic acid (100 mg, 0.48 30 mmol) in anhydrous DCM (10 mL) was added l,l-dimethylethyl-N,N-bis(l- methylethyl)imidocarbamate (485 mg, 2.50 mmol) dropwise at 0 °C under N2. Then the mixture was stirred at r.t. over night. The mixture was filtered and the filtrate was washed with 2N HC1 and brine, dried over anhydrous sodium sulfate and concentrated. The residue was purified by preparative TLC to give 1,1-dimethylethyl (4-methyl-l-oxo-l,3-dihydro-2-benzofuran-5-
MRL-ACV-00045 yl)acetate. -NMR (400 MHz, CDC13) δ ppm 7.70(d, ,7=7.8 Hz, 1H), 7.38 (d, J=7.0 Hz, 1H), 5.25 (s, 2H), 3.67 (s, 3H), 2.27 (s, 3H), 1.44 (s, 9H).
Step D: 1.1 -Dimethylethyl-2-f 4-methyl-l -oxo-1.3-dihvdro-2-benzofuran-5-yl)propanoate A solution of 1,1-dimethylethyl (4-methyl-l -oxo-1, 3-dihydro-2-benzofuran-5-yl)acetate (770 mg, 5 3.1 mmol) in 30 mL of anhydrous THF was cooled to -78 C. NaHMDS (4.0 mmol) was added to the reaction dropwise at -78 °C. After the addition, the mixture was stirred at -78 °C for 1 h and then CH3I (462 mg, 3.20 mmol) was added dropwise at -78 °C. The reaction was warmed to room temperature slowly and stirred at ambient temperature over night. The reaction was quenched with NH4CI solution, and extracted with EtOAc. The organic layer was washed with
10 brine, dried over anhydrous sodium sulfate and concentrated. The residue was purified via preparative TLC to afford l,l-dimemylemyl-2-(4-me1hyl-l-oxo-l,3-dihydro-2-berizofuran-5- yl)propanoate. 'H-NMR (400 MHz, CDCI3) δ ppm 7.67(d, .7=7.8 Hz, 1H), 7.37 (d, 7=7.8 Hz, 1H), 5.19 (s, 2H), 3.80(dd, .7=7.0 Hz, 1H), 2.24 (s, 3H), 1.40 (d, .7=7.0 Hz, 1H), 1.32 (s, 9H). Step E: 2-(4-Methyl-l-oxo-1.3-dihydro-2-benzofuran-5-yl)propanoic acid
15 To a solution of l,l-dimemylemyl-2-(4-methyl-l-oxo-l,3-dmydro-2-benzofuran-5-yl)propanoate (400 mg, 1.4 mmol) in 10 mL of anhydrous DCM was added TFA (2.5 mL) dropwise at r.t. Then the mixture was stirred for 1 hour. The solvent was removed under vacuum to give the crude 2-(4-methyl-l -oxo-1 ,3-dihydro-2-terizofuran-5-yl)propanoic acid, which was used for next step without purification.
20 Step F: S-f2-Hvdroxy-l-methylemyl -memyl-2-benzofuran-l(3/ )-one
To a solution of 2-(4-memyl-l-oxo-l,3-d hydro-2-benzofuran-5-yl)propanoic acid
(300 mg, 1.4 mmol) in 18 mL of anhydrous THF was added BH3.THF (2 mL, 2 mmol) dropwise at 0 °C. Then the mixture was warmed to room temperature slowly and then stirred for 3 hours. Then the mixture was quenched with MeOH and the solvent was removed under vacuum. The
25 residue was the purified via prep-TLC to give 5-(2-hydroxy-l-methylethyl)-4-methyl-2- benzofuran-l(3i¾)-one. ½-NMR (400 MHz, CDCI3) δ ppm 7.73(d, .7=7.8 Hz, 1H), 7.40 (d, .7=7.8 Hz, 1H), 5.23 (s, 2H), 3.77(d, .7=7.0 Hz, 2H), 3.36-3.42 (m, 1H), 2.30 (s, 3H), 1.27 (d, .7=7.0 Hz, 3H).
Step G: 2-(4-Methyl-l-oxo-1.3-dihvdro-2-benzofuran-5-yl)propanal
30 5-(2-Hydroxy-l-me lethyl)-4-methyl-2-berizofuran-l(377)-one (161 mg, 0.781 mmol, 1.0 eq) was dissolved in DCM (6 ml). To above solution was added Dess-MartinPeriodinane (397 mg, 0.937 mmol, 1.2 eq). The reaction was stirred at rt for 2 hr. To the reaction was added DCM (10 Ml), a2S203 (6 mL) and H20 (6 mL). The mixture was stirred at r.t. for 30 minutes and formed two layers. The bottom layer was separated and washed with aqueous NaHC03, brine
35 and water, dried over Na2SC> , filtered, and concentrated to dryness. The crude product was used to next step without purification. ½ NMR (500 MHz, CDCI3, δ in ppm): 9.70 (1H, s, CHO), 7.79 (1H, d, J= 7.8 Hz), 7.28 (1H, d, J= 7.8 Hz), 5.28 (2H, s), 3.27 (1H, m), 2.32 (3H, s), 1.50 (3H, d, J= 7.2 Hz).
MRL-ACV-00045
4-Me yl-5-(l-methyl-2-piperazin-l-ylethvD^^
Step A: fer^Bulyl-4-[2-f4-methyl-l-oxo-13-dih^^
5 carboxylate
In a 100 mL round bottom flask, 2-(4-methyl-l-oxo-l,3-dihydro-2-benzofuran-5-yl)propanal (100 mg, 0.49 mmol, 1.0 eq) and N-Boc Piperazine (91 mg, 0.49 mmol, 1.0 eq) was dissolved in DCM (10 mL). To above solution was added sodium triacetoxyborohydride (208 mg, 0.98 mmol, 2.0 eq). The reaction was stirred at RT for 16 hr. The reaction was then diluted with
10 DCM (10 mL), washed with aqueous bicarbonate, water and brine. The organic phase was dried over MgS04, filtered and concentrated. The product was obtained after purification by flash column chromatography (5% MeOH/DCM). LC-MS (IE, m/z): 375.4 [M + 1]+.
Step B : 4-MethvI-5-( 1 -methyl-2-piperazin-l -ylethyl)-2-benzofuran-l f 3HVone
tert-Butyl-4-[2-(4-memyl-l-oxo-l,3-dihydro-2-benzote^
15 (160 mg, 0.43 mmol) was stirred in TFA (3 mL) at r.t for 3 hr. The reaction was concentrated and pump over high vacuum pump overnight to give the desired product, which could be converted to its freebase by partitioning between an organic solvent and saturated NaHCC>3 solution. LC-MS (IE, m/z): 275 [M + 1]+.
3-Methyl-6- \ 2-(piperazin- 1 -yPethyl] -3.4-dihvdro- 1 -isochromen- 1 -one hydrochloride Step A: 6-Bromo-3-methyl-3.4-dihvdro-lf -isochromen-l-one
A solution of diisopropylamine (13 ml, 93 mmol)) in THF (155 ml) at -78 °C was treated with n- BuLi (1.6M in Hexanes; 58 ml, 93 mmol) over a period of 15 minutes using a syringe pump.
25 In a separate flask, a solution of 2-methyl-4-bromo benzoic acid (10 g, 46 mmol) and HMPA (8.3 ml, 46 mmol) in THF (155 ml) was cooled to -78 °C. Methyl Lithium (29 ml, 46 mmol) was added slowly via syringe to the cooled solution in order to make the lithio carboxylate. The resulting solution was stirred for 10 minutes and then transferred via cannula to the LDA solution at -78 °C. The resulting bright red solution was stirred at -78°C for an additional 1 hour before
30 being quenched with anhydrous acetaldehyde (7.9 ml, 140 mmol) (color changed from red to orange to clear yellow) and the reaction was then taken out of the dry ice acetone bath and
MRL-ACV-000 5 allowed to stir for an additional 1 hour. The flask containing the reaction mixture was then resubmerged in the dry ice acetone bath before it was quenched with 4M HCl in Dioxane (50mL) followed by 25mL of MeOH. The reaction was stirred at room temp for an additional 1 hour. The crude reaction was partitioned b/w 200mL EtOAc and 200mL water. The organic layer was 5 washed with waster, brine, dried with mag. sulfate, filtered and concentrated. Purification via MPLC (30-70% DCM/Hexanes) afforded 9.4g (84% yield) of 6-bromo-3-methyl-3,4-dihydro- l.ff-isochromen-1-one as an off white solid. ½ NMR (500 MHz; CDC13): 7.98 (d, J= 8.2 Hz, 1H), 7.56 (dd, = 1.5, 8.2 Hz, 1H), 7.45 (s, 1H), 4.71 (m, 1H), 2.94 (m, 2H), 1.55 (d, /= 6.3 Hz, 3H). LC-MS (IE, m/z): 241 [M+l]+.
10 Ste B: 6-il.3-Dioxolan-2-ylmethylV3-methyl-3.4-dihvdro-lJ¾r-isochromen-l-one
A sealed tube was charged with aryl bromide, palladium(II) acetate (0.028 g, 0.12 mmol) and tri- t-butylphosphine-BF4 complex (0.072 g, 0.249 mmol) and sealed. The tube was evacuated and refilled with nitrogen before DMF (12 ml) and 6-bromo-3-methyl-3,4-dihydro-l -isochromen-l- one (0.75 g, 3.1 mmol) were added followed by bromo(l,3-dioxolan-2-ylmethyl)zinc (6.2 ml, 3.1
15 mmol). The tube was heated to 110 °C in the microwave for 75 minutes, after which it was cooled, diluted with EtOAc, filtered, concentrated and purified via MPLC (20-50%
EtOAc/Hexanes) to afford 490mg (64% yield) of 6-(l,3-dioxolan-2-ylmethyl)-3-methyl-3,4- dihydro-lif-isochromen-l-one (Compound IB) as a clear oil which solidifies on standing. 1H NMR (500 MHz; CDCI3): 8.04 (d, 7.8 Hz, 1H), 7.32 (d, /= 8.0 Hz, 1H), 7.17 (s, 1H), 5.11
20 (t, 7=4.7 Hz, 1H), 4.68 (m, 1H), 3.96 (m, 2H), 3.88 (m, 2H), 3.03 (d, J= 4.9 Hz, 2H), 2.93 (m, 2H), 1.54 (d, J= 6.4 Hz, 3H). LC-MS (IE, m/z): 249 [M+l]+.
Step C: fe -Butyl 4-[2-(3-me1hyl-l-oxo-3.4-dihyc¾o-lH-isoclrromen-6-yl)ethyl1piperazine-l- carboxylate
A 1 :1 solution of dioxane : 3N HCl was added to a flask containing of 780 mg( 3.2 mmol) of 6- 25 (1 ,3-dioxolan-2-ylmethyl)-3-methyl-3,4-dihydro-lH-isochromen-l-one. The reaction was then stirred at room temp overnight. The crude reaction mixture was then partitioned between water and DCM. The organic layer was washed with saturated sodium bicarbonate solution, followed by brine. The organic layer was then dried with magesium sulfate, filtered and concentrated. The crude aldehyde was redissolved in DCM. To the solution was added boc-piperazine (671 30 mg, 3.6 mmol) followed by sodium triacetoxyborohydride (1.9 g, 9.0 mmol). the reaction mixture was allowed to stir overnight before being quenched with 1 OmL of MeOH. The excess solvent was removed and the residue was re-redissolved in DCM; washed with water and brine, dried with magnesium sulfate, filtered,concentrated and purified via MPLC (50-100%
EtOAc/Hex) to afford 850 mg of tert-butyl 4-[2-(3-methyl-l-oxo-3,4-dihydro-lii'-isochromen-6- 35 yl)ethyl]piperazine-l-carboxylate as a golden oil. Ή NMR (500 MHz; CDCI3): 8.02 (d, J= 7.8 Hz, 1H), 7.24 (d, J= 7.7 Hz, 1H), 7.09 (s, 1H), 4.68 (m, 1H), 3.49 (m, 4H), 2.94 (m, 4H), 2.88 (m, 2H), 2.51 (m, 4H), 1.54 (d, J= 6.8 Hz, 3H), 1.48 (s, 9Ά). LC-MS (IE, m/z): 375 [M+l]+. Step D: 3-Memyl-6-[2-(piperazin-l-vnethyl]-3.4-dihvdro-lg-isochromen-l-one hydrochloride
MRL-ACV-00045
A solution of tert-butyl 4-[2-(3-memyl-l-oxo-3,4-oihydro-l^-isochromen-6-yl)eftyl]piperazine- 1-carboxylate (850 mg, 2.3 mmol) was stirred in 4N HCl in Dioxane for 4 hours. The excess solvent was then removed to give the free amine as the HCl salt. LC-MS (IE, m/z): 275 [M+l] .
tert -butyl 4- (2- [T35V3 -methyl- 1 -oxo-3.4-dihvdro- 1 ff-isocbromen-6-yllethyl Ipiperazine- 1 - carboxylate
Step A: (3S -6-Bromo-3-methyl-3.4-dihvdro-lfl'-isochromen-l-one
Chiral separation of racemic 6-bromo-3-methyl-3,4-dihydro-lii-isochromen-l-one using 10 ChiralPak AS 4.6x250mm lOu column, eluting with 60% IPA Heptane. The faster eluting isomer was identified as the S-isomer. !H NM (500 MHz, CDC13): 7.98 (d, J= 8.2 Hz, 1H), 7.56 (dd, J= 1.5, 8.2 Hz, 1H), 7.45 (s, 1H), 4.71 (m, 1H), 2.94 (m, 2H), 1.55 (d, J= 6.3 Hz, 3H). LC-MS (IE, m/z): 241 [M+l]+.
Ste B: GS't^-fl -Dioxolan^-ylmethylVS-methyl-S^-dihydro-liy-isochromen-l-one
15 (3S)-6-(l,3-dioxolan-2-ylmethyl)-3-methyl-3,4-dihydro-lii-isochromen-l-one was obtained using the procedure described for the synthesis of 6-(l,3-dioxolan-2-ylmethyl)-3-methyl-3,4- dihydro-l i-isochromen-l-one utilizing the chiral S-enantiomer as the starting material. *H NMR (500 MHz, CDCI3): 8.04 (d, J= 7.8 Hz, 1H), 7.32 (d, ,/= 8.0 Hz, 1H), 7.17 (s, 1H), 5.11 (t, .7=4.7 Hz, 1H), 4.68 (m, 1H), 3.96 (m, 2H), 3.88 (m, 2H), 3.03 (d, J= 4.9 Hz, 2H), 2.93 (m, 20 2H), 1.54 (d, J= 6.4 Hz, 3H). LC-MS (IE, m z): 249 [M+l]+.
Step C: rerf-ButvI 4-i2-rr35^-3-methyl-l-oxo-3.4-dihvdro-ljy-isochromen-6- yl ethyllpiperazine-l-carboxylate
terf-Butyl 4-{2-[(35)-3-memyl-l-oxo-3,4-(Jihydro-lii-isochromen-6-yl]ethyl}piperazine-l- carboxylate was obtained using the procedure described for the synthesis of ieri-butyl 4-{2-[3- 25 memyl-l-oxo-S^dmydro-lii-isochromeii-e-yllethylJpiperazine-l-carboxylate utilizing the chiral S-enantiomer as the starting material in the reaction. ½ NMR (500 MHz, CDCI3): 8.02 (d, /= 7.8 Hz, 1H), 7.24 (d, J= 7.7 Hz, 1H), 7.09 (s, 1H), 4.68 (m, 1H), 3.49 (m, 4H), 2.94 (m, 4H), 2.88 (m, 2H), 2.51 (m, 4H), 1.54 (d, J= 6.8 Hz, 3H), 1.48 (s, 9H). LC-MS (IE, m/z): 375 [M+l]+.
30 Step D: (3^-3-Methyl-6-f2-(piperazin-l-vDethyl1-3.4-dihvdro-lg-isochromen-l-one
A solution of f erf-butyl 4-{2-[(35)-3-methyl-l-oxo-3,4-dihydro-l/i-isochromen-6- yl]ethyl}piperazine-l-carboxylate in 4N HCl indioxane was stirred at room temp for 4 hours and the excess solvent removed. The residue was partitioned between 10% IP A Chloroform and IN NaOH. The organic layer was dried over magnesium sulfate, filtered and concentrated. The free
S^-Piperazin-l-ylemvD^.l.S-benzoxadiazole
Step A: 5-Allyl-2.1,3-benzoxadiazole
5 5-Bromo-2,l,3-benzoxadiazole (10 g, 50.3 mmol) was dissolved in toluene (300 ml) and added Lithium chloride (6.4 g, 150 mmol), Pd(Ph3P)4 (2.90 g, 2.50 mmol), and allyl tributyltin (19 ml, 60 mmol). The reaction mixture was degassed and refluxed under N2 for 3 hrs. It was cooled and poured into water then extracted with ethyl acetate. The organic layer was washed with brine lx, dried and evaporated to dryness. The residue was chromatographed through 120g ISCO Redi- 10 Sep columns and eluted with 0- 10% ethyl acetate / hexane to yield 5-allyl-2, 1 ,3-benzoxadiazole.
½-NMR (500 MHz, DMSO): δ ppm 7.96 (d, J=9.1 Hz, 1H), 7.44(d, J= 9.1 Hz, 2H), 5.95-6.04 ( m, 1H), 5.17 (d, J=14.7Hz, 1H), 5.15 ( d, J=8.9Hz, 1H), 3.50 (d, J= 6.7Hz, 2H)
Step B: 5-f2-Piperazin-l-ylethylV2.1.3-benzoxadiazole
To a solution of 5-allyl-2,l,3-benzoxadiazole (480 mg, 3.0 mmol) in DCM was cooled to -78 °C.
15 Ozone was bubbled in until a bluish tint then bubbled in nitrogen to get rid of excess ozone. The Boc- piperazine (560 mg, 3.0 mmol) was then added followed by sodium triacetoxyborohydride (2500 mg, 12 mmol). The reaction mixture was warmed up to RT and stirred overnight. Poured the reaction into 1 N NaOH and extracted with ethyl acetate 2X. The ethyl acetate layer was dried over MgSO/t, filtered and evaporated to dryness. The residue was purified through a 40 g Redi-
20 sep column to yield /err-butyl 4-[2-(2,l,3-benzoxadiazol-5-yl)ethyl]piperazine-l-carboxylate. tert-Butyl 4-[2-(2,l,3-benzoxadiazol-5-yl)ethyl]piperazine-l-carboxylate (470 mg, 1.4 mmol) was then dissolved in dioxane (10 mL) and added 7 mL of 4M HCl in dioxane. The reaction was stirred at room temperature overnight. Evaporated off all solvent and the residue was taken up in ethyl acetate basified with IN NaOH. The ethyl acetate was separated and washed with brine
25 then dried over Na2S04 and evaporated to dryness. The residue was purified by chromatography using 5% (NH4OH:MeOH 1:10) in 95% DCM to yield 5-(2-piperazin-l-ylethyl)-2,l,3- benzoxadiazole. ^ NMR (600 MHz,CDCl3): δ 7.72(d, J= 9.2Hz, 1H), 7.28 (d, J= 9.2Hz, 1H), 2.92( t, J= 4.9 Hz, 2H), 2.88 ( t, J= 7.6Hz, 1H), 2.65 (t, J= 7.6Hz, 1H). LC-MS: M+l= 233.
1 -(5 -Nitro-2.3 -dihvdro- 1 H -inden-2-vDpiperazine
RL-ACV-00045
To a solution of 5-nitro-indene-2-one (1.0 g, 5.6 mmol) in methanol (40 mL) containing a stir bar was added sodium cyanoborohydride (1.7 g, 28 mmol) and N-Boc piperazine (1.6 g, 8.5 mmol) followed by addition of few drops of acetic acid; the resulting mixture was stirred for overnight. Analysis of the reaction mixture by LC indicated that reaction had gone to completion. The 5 solution was concentrated in vacuo and the resulting crude was dissolved in EtOAc and washed with saturated sodium bicarbonate solution, and brine, then dried (Na2SC>4), filtered and concentrated in vacuo. The crude residue was then subjected for purification by silica gel column chromatography (5% MeOH in DCM) to provide reri-butyl 4-(5-nitro-2, 3-dihydro-l -inden-2- yl) piperazine- 1-carboxylate. LC-MS (IE, m/z): 348 [M+l] . The material was further treated 10 with TFA to remove the Boc group. Removal of volatiles gave rise to l-(5-nitro-2,3-dihydro-lH -inden-2-yl)piperazine, which was used without further purification.
2-Piperazin- 1 -ylindane-5-carbonitrile hydrochloride
15 Step A: ferf-Butyl 4-("5-bromo-2.3-dihvdro-lH-inden-2-yl)piperazine-l-carboxylate
In a 100 mL round bottom flask, reri-butyl di(prop-2-en-l-yl)carbamate (0.74 mL, 3.4 mmol) was dissolved in dichloromethane (10 mL). The solution was cooled to -78 °C. To above solution was bubbled ozone for 15 min. The solution turned into light blue and the color stayed. To above solution was bubbled nitrogen to remove excess ozone until the solution turned into
20 colorless. To above solution was added (5-bromo-2,3-dihydro-l/f-inden-2-amine (1.0 g, 3.4 mmol), triethylamine (0.48 mL, 3.4 mmol) followed by sodium triacetoxyborohydride (4.3 g, 20 mmol). The reaction was allowed to warm up to room temperature and stirred at this temperature overnight. HPLC-MS showed product was formed as major peak. To above solution was added water (5 mL), extracted with dichloromethane (10 mL x 3). The organic phase was
25 dried over MgS04, filtered and concentrated. The product was obtained as white solid after purification by flash column chromatography. LC-MS (IE, m/z): 381.2 [M + 1]+. XH NMR (500 MHz, CDC13, δ in ppm): 7.30 (1H, s), 7.25 (d, J= 8.0 Hz, 1H), 7.03 (d, J= 8.0 Hz, 1H), 2.0 - 4.0 (01, 13H), 1.5 (s, 9H).
Step B: fe -Butyl 4-f5-cvano-2.3-dihvdro-lH-inden-2-vDpiperazine-l-carboxylate
30 To a 5 mL microwave vial was charged with ferf-butyl 4-(5-bromo-2,3-dihydro-lH-inden-2- yl)piperazine- 1-carboxylate (370 mg, 0.97 mmol), zinc cyanide (114 mg, 0.97 mmol) and palladium triphenylphosphane (1 :4) (56 mg, 0.049 mmol). Above mixture was dissolved in N- methyl-2-pyrrolidinone (1 mL). The reaction vial was degassed, filled with N2 and heated in microwave reactor at 85 °C for 2 hr, then at 100 °C for 20 min. To above reaction was added 35 dichloromethane (5 mL), washed with small amount of water. The organic phase was dried over MgS04, filtered and concentrated. The product was obtained as white solid after purification by
M L-ACV-000 5 flash column chromatography. LC-MS (IE, m/z): 328.3 [M + 1]+. ½ NMR (500 MHz, CDC13; 5 in ppm): 7.47 (s, 1H), 7.45 (d, 8.0 Hz, 1H), 7.28 (d, J= 8.0 Hz, lH), 2.4 - 3.6 (m, 13H), 1.5 (s, 9H).
Step C: 4-f5-Cvano-2.3-dihydro-lg-inden-2-yl')piperazin-l-ium chloride
5 In a 4 mL reaction vial, was added rert-butyl 4-(5-cyano-2,3-dihydro-lH-inden-2-yl)piperazine- 1-carboxylate. To above vial was added 4 N HC1 in dioxane (1 mL), let stirred at RT for 2 hr. reaction mixture was concentrated to give the desired product. LC-MS (IE, m/z): 228.3 [M +
6-Piperazin- 1 -yl-5.6.7.8-tefaahvdronaphthof23-c| [1.2.51oxadiazole hydrochloride:
Step A: fS-Cl -Dioxo-LS-dihvdro^H-isoindol^-vnphenyllacetic acid
A solution of phthalic anhydride (1.2 g, 8.3 mmol) and (3-aminophenyl)acetic acid (1.0 g, 6.9 mmol) in acetic acid (25 mL) was heated to reflux for 16 hours. The reaction was cooled, and 15 diluted with 25 mL of EtO Ac. A lot of solids crashed out from the solution. The solids were collected by filtration, and identified as the desired [3-(l,3-dioxo-l,3-dihydro-2H-isoindol-2- yl)phenyl]acetic acid. LC-MS (IE, m/z) 282 [M + 1]+.
Step B: 2-r7-Oxc-5.6.7.8 etrahvdroraphthalen-2-ylVlH-isoindole-1.3<"2HVdione
To a solution of [3-(l,3-dioxo-l,3-dihydro-2H-isoindol-2-yl)phenyl]acetic acid (0.75g, 2.7
20 mmol) in DCM (25 mL) was added oxalyl chloride (0.28 mL, 3.2 mmol) and a drop of DMF.
The mixture was allowed to stir at RT until all solids disappeared. At that point, the solution was cooled to to 0 °C with an ice bath, and aluminum chloride (l.lg, 8.0 mmol) was added into the reaction slowly. After stirring the mixture for another 10 minutes, ethylene was bubbled through the reaction via a long needle. TLC showed complete reaction within 30 minutes. The reaction
25 was poured into ice water, neutralized with sodium carbonate, extracted with DCM, dried, concentrated, and purified by MPLC (Hexane EtOAc). LC-MS (IE, m/z) 292 [M + 1]+. Ste C: te^Butyl4-f7-(13-dioxo-L3-dihvdro-2H-isoindol-2-ylV1.2.3.4-tetrahvdromphthd yllpiperazine- 1 -carboxylate
To a flask charged with 2-(7-oxo-5,6,7,8-tetrahydronaphthalen-2-yl)-lH-isoindole-l,3(2H)-dione 30 (0.25g, 0.86 mmol), N-Boc piperazine (0.24g, 1.3 mmol), and a stir bar was added titanium isopropoxide (2.5 mL), ethanol (10 mL), and sodium cyanoborohydride (0.27g, 4.3 mmol). The mixture was allowed to stir at RT for 2 hours. LC showed formation of the desired product at that point The reaction was diluted with EtOAc (50 mL), washed with water and brine, dried over sodium sulfate, filtered and concentrated, and purified by MPLC to afford the desired 35 product. LC-MS (IE, m/z): 462 [M + 1]+.
MRL-ACV-00045
Step D: 2-{7-r4-(Trifluoroacetyi)piperazin-^
isoindole- 1 ,3("2HVdione
To a flask charged with i.rf-butyl 4-[7-(l,3-dioxo-l,3-dihydro-2H-isoindol-2-yl)-l,2,3,4- tetrahydronaphthalen-2-yl]piperazine-l-carboxylate (300mg, 0.65 mmol) and a stir bar was 5 added TFA (2 mL). The mixture was allowed to stir at RT for 1 hour. LC showed complete removal of the Boc group. TFA was removed under reduced pressure, and the residue was dissolved in DCM (5 mL). To the solution was added pyridine and trifluoroacetic anhydride (0.27 mL, 2.0 mmol). LC showed formation of the desired product within 30 minutes. The product was purified by MPLC.
10 Step E: 2 3-Nitro-7-14-ftrifluoroa∞tyl>pip^^ - isoindole- 1,3(2H Vdione
To a solution of 2-{7-[4-(Trifluoroacetyl)piperazin-l-yl]-5,6,7,8-tetrahydronaphthalen-2-yl}-lH- isoindole-l,3(2H)-dione (3Smg, 0.77 mmol) in cone. H2SO4 (2 mL) was added potassium nitrate (15 mg, 0.15 mmol) at 0 °C. LC showed formation of the desired product within 10 minutes. 15 The reaction was poured into ice, and extracted with DCM twice. The product was purified by mass-directed HPLC. LC-MS (IE, m/z): 503 [M + 1]+.
Step F: fe -Butyl 4-(7-amino-6-mtro-1.23.4-tetrahydronaphthalen-2-vl")pipera2ine-l-carboxylate To a solution of 2-{3-Nitro-7-[4-(trifluoroacetyl)piperazin-l-yl]-5,6,7,8-tetrahydronaphthalen-2- yl}-lH -isoindole-l,3(2H )-dione (150 mg, 0.30 mmol) in Ethanol (5 mL) was added hydrazine
20 (0.094 mL, 3.0 mmol). The solution turned bright yellow right away. LC showed cleavage of the phthalic anhydride as well as the trifluoroacetate group. Boc anhydride (65 mg, 0.30 mmol) and aqueous sodium bicarbonate (5 mL) were added to the reaction. LC showed formation of the product within 15 minutes. The reaction was diluted with water (20 mL), extracted with DCM twice, dried over sodium sulfate, and purified by MPLC (hexane/EtOAc). LC-MS (IE, m/z): 377
25 [M + l]+.
Step G: ferf-Butyl 4-(l-oxido-5.6.7.8-tetrahydronaphthol2.3-ciri.2.51oxadiazol-6-vnpiperazine- 1-carboxylate
To a solution of feri-Butyl 4-(7-amino-6-nitro-l,2,3,4-tetrahydronaphthalen-2-yl)piperazine-l- carboxylate (160 mg, 0.42 mmol) in ethanol (3 mL) was added potassium hydroxide (36 mg, 30 0.64 mmol). The solution was stirred until all solids dissolved. At that point, sodium
hypochlorite (1.3 mL, 1.3 mmol) was dropped into the reaction. LC showed quite slow reaction. Another 1.3 mL of sodium hypochlorite was added to complete the reaction. The desired product was separated by reverse phase HPLC (water: Acetonitrile with 0.1% TFA). LC-MS (IE, m/z): 375 [M + 1]+
35 Step H: ferf-Butyl 4-(5.6.7.8-tetrahydronaphthor2.3-c1fl.2.S oxadiazol-6-yl')pipera2ine-l- carboxylate
A solution of ierf-Butyl 4-(l-oxido-5,6,7,8-tetrahydronaphtho[2,3-c][l,2,5]oxadiazol-6- yl)piperazine-l-carboxylate (100 mg, 0.27 mmol) and triphenyl phosphine (140 mg, 0.53 mmol)
MRL-ACV-00045 in THF (3mL) was heated to 140 °C in a microwave reactor for 30 minutes. LC showed formation of the desired product, which was separated by reverse phase HPLC (water:
Acetonitrile with 0.1% TFA). LC-MS (IE, m/z): 359 [M + 1]+.
Step I: 6-Piperazin-l-yl-S.6.7.8-tetrahvdronaphtho[2.3-c1f 1.2.51oxadiazole hydrochloride
5 To a flask charged with feri-Bu1yl-4-(5,6,7,8-tetrahydronaphtho[2,3-c][l,2,5]oxadiazol-6- yl)piperazine-l-carboxylate (50 mg, 0.14 mmol) was added 4N HCI in dioxane (lmL). The mixture was allowed to stir for 30 minutes at RT. LC showed complete reaction. The solvent was removed under reduced pressure, and the resulting 6-Piperazin-l-y 1-5,6,7,8- tetrahydronaphtho[2,3-c][l,2,5]oxadiazole hydrochloride was used without further purification.
10 LC-MS (IE, m/z): 259 [M + if.
1 -[2-(6-Nitropyridin-3-yl)ethyllpiperazine hydrochloride
Step A: 5-Nitro-2-vinylpyridine
15 To a 20 mL microwave tube was added 2-bromo-5-nitropyridine (0.20 g, 0.98 mmol), potassium vinyltrifluoroborate (145 mg, 1.1 mmol), PdCl2(dppf)-CH2Cl2 complex (40 mg, 0.049 mmol), and a stir bar. The tube was sealed, and ethanol (6 mL) and triethylamine (0.41 mL, 3.0 mmol) was added via syringe. The mixture was purged three times with nitrogen and then heated to 120 °C for 30 minutes. LC at that point showed mostly product. The reaction was diluted with
20 DCM, adsorbed onto silica gel, and purified by silica gel flash chromatography (Hexane:EtOAc).
LC-MS (IE, m/z): 151 [M + 1]+.
Step B: l-[2-(6-Nitropyridin-3-vDemyl]piperazine hydrochloride
To a flask charged with 5-nitro-2-vinylpyridine (55 mg, 0.37 mmol), N-Boc Piperazine (68 mg, 0.37 mmol), and a stir bar was added dioxane (0.6 mL). The flask was sealed and purged with
25 nitrogen. To the flask was injected a stock solution of 250 mg Ru(COD)(methyallyi)2 and 481 mg l,3-Bis(diphenylphosphino)propane in 3.2 mL dioxane (0.4 mL) and
trifluoromethanesulfonic acid (3.2 uL, 0.037 mmol). The mixture was heated to 100 °C for 16 hours. LC showed formation of the desired product, which was separated by silica gel flash chromatography (Hexane:EtOAc). LC-MS (IE, m/z): 337 [M + 1] . The material was further
30 treated with 4N HCI in dioxane, and the crude 1 -[2-(6-nitropyridin-3-yl)ethyl]piperazine
hydrochloride was carried on without further purification. LC-MS (IE, m/z): 237 [M + 1] .
MRL-ACV-00045
2-Methyl- 1 -f 2-(4-nitrophenyl ethyllpiperazine hydrochloride :
A solution of ieri-butyl 3-methylpiperazine-l-carboxylate (100 mg, 0.50 mmol), l-(2- bromoethyl)-4-nitrobenzene (170 mg, 0.75 mmol), tetrabutylammonium iodide (18 mg, 0.05 mmol), K2CO3 (138 mg, 1.0 mmol), and DMF (2 mL) was heated to 80 degrees for 16 hours. LC showed formation of the desired product. The reaction was diluted with EtOAc (50 mL), washed with aq. LiCl, dried over sodium sulfate, concentrated and purified by MPLC (Hexane: EtOAc). The product was further treated with 4N HCI in dioxane to furnish the piperazine as the HCI salt LC-MS (IE, m/z): 250 (M+l)+.
e-dH-Tetrazol-l-ylVS^-dihydronaphthalen^dHVone:
To a solution of [4-(lH-tetrazol-l-yl)phenyl] acetic acid (0.50g, 2.4 mmol) in DCM (10 mL) was added oxalyl chloride (0.37g, 2.9 mmol) and a drop of DMF. The mixture was allowed to stir at T for 2 hours. The solvent was removed under reduced pressure, and the residue was
15 redissolved in DCM. The solution was cooled to 0 °C with an ice bath. To this solution was added aluminum chloride (0.98g, 7.4 mmol) in small portions. Ethylene was then bubbled into the reaction via a long needle for 2 hours. LC showed formation of the desired product. The reaction was poured into ice and extracted with DCM. The extractions were combined, dried over sodium sulfate, adsorbed onto silica gel, and purified by MPLC (Hexane/EtOAc). The
20 desired 6-(lH-tetrazol-l-yl)-3,4-dihydronaphthalen-2(lH)-one was collected as a off-white solid.
LC-MS (IE, m/z): 215 [M + 1]+.
2.1.3-Benzoxadiazol-5-yl acetaldehvde:
25 Step A: 5-Allyl-2.1 -benzoxadiazole
Lithium chloride (0.64 g, 15.1 mmol) was added to a mixture of 5-bromo-2,l,3-benzoxadiazole (1.0 g, 5.0 mmol), tetrakis(triphenylphosphine)palladium (0.29 g, 0.25 mmol) and allyl tri-n- butyltin (1.87 ml, 6.0 mmol) in 30 ml toluene then refluxed for 3 hours. The reaction was filtered, concentrated, and loaded into an ISCO 120 gm Redi-Sep then eluted with a gradient of
30 0-50% ethyl acetate/hexane. ½-NMR (500 MHz, CDC13) δ ppm 7.76 (d, J=9 Hz, 1H), 7.59 (s,lH ), 7.28( d, J= 9Hz, 1H), 5.95-6.03( m, 1H), 5.24 ( d, J= 10 Hz, 1H) , 5.20 ( d, J= 15 Hz, 1H) , 3.49 ( d, J = 6.5Hz, 2H) .
Step B: 2.1.3-Benzoxadiazol-5-ylacetaldehvde
A solution of 5-a!lyl-2,l,3-benzoxadiazole (500 mg, 3.1 mmol) in DCM (10 ml) was cooled to - 78 °C then bubbled in ozone until a faint blue color occurred. The reaction was purged with
MRL-ACV-00045 nitrogen to get rid of excess ozone then added dimethyl sulfide (2.3 ml, 31 mmol) and stirred at room temperature for 2 hours. The reaction was concentrated and used without further purification.
1 -fPiperazin- 1 -ylmethyl)indane-4-carbonitrile
Step A: l-Oxo-2,3-dihvdro-lH-indene-4-carbonitrile
To a solution of 4-bromo-2,3-dihydro-lH-inden-l-one (1.00 g, 4.74 mmol) in 5 mL of DMF was added Zn(CN)2 (556 mg, 4.74 mmol) and Pd(PPh3)4 (77 mg, 0.14 mmol), and the reaction 10 mixture was stirred under microwave irradiation for 1 h at 165 °C. The solvent was removed in vacuum to afford the crude compound, which was purified via column chromatography to afford l-oxo-2,3-dihydro-lH-indene-4-carbonitrile.
Step B : ( 1 EV 1 -[( Methyloxytaiethylidene] -2.3 -dihydro- 1 H-indene-4-carbonitrile
Sodium bis(trimethylsilyl)amide (2 mL, 4 mmol, 2M in THF) was added to a stirred suspension
15 of (methoxy methyl)triphenylphosphonium chloride (1.47 g, 4.29 mmol) in dry THF (20 mL) at 0 °C for 35 min and a solution of l-oxo-2,3-dihydro-lH-indene-4-carbonitrile (450 mg, 2.86 mmol) in THF (10 mL) added over 10 min. The mixture was stirred at 0 °C for 2 h and at room temperature for 1 h. Water was added and the mixture was partitioned between EtOAc and brine. The organic layer was dried and concentrated. The crude product was purified via prep-
20 TLC (PE:EtOAc=10:l) to afford (lE)-l-[(methyloxy)methylidene]-2,3-dihydro-lH-indene-4- carbonitrile. 'H-NMR (400 MHz, CDC13) 5 ppm 8.00 (d, .7=8.3 Hz, 0.4H), 7.42 (d, .7=8.3 Hz, 0.6H), 7.30-7.40 (m, 1H), 7.18-7.22 (m, 1H), 6.70 (s, 0.6H), 6.22 (s, 0.4H), 3.72 (s, 3H), 3.15 (t, 7=5.7 Hz, 2H), 2.70-2.82 (m, 2H).
Step C: l-Formyl-2.3-dihvdro-lH-indene-4-carbonitrile
25 A solution of (lE)-l-[(methyloxy)methylidene]-2,3-dihydro-lH-indene-4-carbonitrile (250 mg, 1.05 mmol) in DCM (5 mL) was added BBr3 dropwise at -78 °C under N2. Then the mixture was stirred at this temperature for 3h. It was poured into ice-saturated NaHC03 solution, and extracted with DCM. The organic layer was washed with brine and dried over Na2S04. The solvent was removed in vacuo to give crude l-formyl-2,3-dihydro-lH-indene-4-carbonitrile
30 (150mg, crude), which is used for next step directly. 1H-NMR (400 MHz, CDC13) δ ppm 9.72 (s, 1H), 7.54 (d, .7=7.6 Hz, 2H), 7.34 (t, .7=7.6 Hz, 1H), 3.76 (s, 1H), 3.18-3.24 (m, 2H), 2.42- 2.58 (m, 2H).
Step D: fert-Butyl 4- i4-cvano-2.3-dihydro-lH-inden-l-yl)methyl]piperazine-l-carboxylate
MRl-ACV-00045 l-Formyl-2,3-dihydro-lH-indene-4-carbonitrile (0.22 g, 1.3 mmol) was dissolved in MeOH (8 mL) and treated with ierf-butyl piperazine-l-carboxylate (0.35 g, 1.9 mmol) followed by treatment of sodium cyanoborohydride (0.40 g, 6.43 mmol) and few drops of Acetic acid. The resulting mixture was then stirred at room temperature overnight. LC indicated completion of the 5 reaction. The reaction mixture was concentrated in vacuo, treated with EtO Ac and washed with saturated NaHC03, dried with Na2S04, filtered and loaded into MPLC for separation over silica gel. with 10% MeOH in DCM to afford fert-butyl 4-f(4-cyano-2,3-dihydro-lH-inden-l- yl)methyl]piperazine-l-carboxylate. This material was further treated with TFA to remove the Boc group. Removal of volatiles gave rise to l-(piperazin-l-ylmethyl)indane-4-carbonitrile, 10 which was used as the crude. LC-MS (IE, m/z): 242 (M+l)+.
2-(Methyloxy)-4-(2-oxoethyl benzonitrile
Step A: 2-(Methyloxy)-4-prop-2-en-l-ylbenzonitrile
15 To a 50 mL flask containing a stir bar were added 2-memoxy-4-bromoben_x>nitrile (0.30 g, 1.4 mmol), tetrakis(triphenylphosphine)palladium (82 mg, 0.071 mmol), allyltri-n-butyltin (0.88 mL, 2.8 mmol), and lithium chloride (0.120 g, 2.83 mmol). The resulting mixture was then dissolved in anhydrous toluene (16 mL); the flask was placed in an oil bath and heated at 130 °C. LC as well as TLC (hexanes/EtOAc =1/0.3) indicated that reaction had gone to completion. The flask
20 was taken out of the oil bath and cooled to room temperature. To the flask was poured EtOAc (40 mL) and the mixture was transferred into a separatory funnel and washed with aqueous NaCl. The organic phase was dried over Na2S04, filtered and concentrated to dryness. It was then dissolved in DCM and absorbed into silica gel. The slica gel was then loaded onto a silica column for separation with the solvent systems of hexanes EtOAc (1/0.3); this gave 2-
25 (methyloxy)-4-prop-2-en-l-ylbenzonitrile. LC-MS (IE, m/z): 174 [M + 1]+.
Step B: 2-(Methyloxy)-4-(2-oxoethvl)benzonitrile
To a 25 mL flask containing a stir bar was added compound 2-(methyloxy)-4-prop-2-en-l- ylbenzonitrile (0.15 g, 0.87 mmol) and MeOH (8 mL). The flask was placed in a cold bath of -78 °C. Ozone was bubbled through the flask for about 10 min. followed by addition of dimethyl 30 sulfide (1.5 mL, 24 mmol). The flask was taken out of the cold bath and stirred at room
temperature for 1 h; LC indicated completion of the reaction. The reaction mixture was concentrated to dryness to give 2-(methyloxy)-4-(2-oxoethyl)benzonitrile. LC-MS (IE, m/z): 176
4-Formyl-3^-dihydro-2Jf-chromene-7-carbonitrile
Step A: (4By4-(MemoxymemylideneV3.4-dihvdro-2ff-cto^
In a 250 mL round bottom flask, (methoxymethyl) (triphenyl)phosphonium chloride (4.0 g, 12 5 mmol) was dissolved in THF (20 mL). The solution was cooled to -78 °C. To above solution was added n-butyl lithium (3.5 mL, 2.50 M in hexane, 8.7 mmol) dropwise. The color of reaction changed to orange. The mixture was cooled to -78 °C and to it was added 4-oxo-3,4-dihydro- 2i7-chromeme-7-carbonitrile (1 g, 5.8 mmol). The reaction was let warm to RT and stirred for 18 hours. The reaction was then quenched with addition of saturated ammonium chloride (5 mL) 10 and extracted with dichloromethane. The organic phase was washed with brine (5 mL), dried over anhydrous Na2S04> filtered, concentrated and purified by flash column chromatography (hexane/EtOAc 0-50%). The desired product was obtained (270 mg, 1.34 mmol, 23%). LC-MS (IE, m/z) 202.3 [M + 1]+.
Step B: 4-Formyl-3.4-dihvdro-2g-chromene-7-carbonitrile
15 (4E)-4-(memoxymemylidene)-3,4-dmydro-2W-chromene-7-carbonitrile (230 mg, 1.1 mmol) was dissolved in dichloromethane (6 mL). The solution was cooled to -78 °C. To above solution was added tribromoborane (1.7 mL, 1 M, 1.7 mmol) dropwise over a course of 5 min and subsequently stirred for 30 min at -78 °C. To the reaction mixture was added saturated sodium bicarbonate, extracted with dichloromethane (2 x 20 mL). The organic phase was washed with
20 brine (5 mL), dried over anhydrous Na2S04, filtered, concentrated. The crude product was used without purification. ½ NMR (500 MHz, CDCI3, δ in ppm): 7.0 -7.4 (3H, aromatic), 6.58 (1H, s), 4.55 (2H, m), 2.98 (2H, m).
25 5-Formyl-5,6,7.8-tetrahydronaphthalene-2-carbonitrile
Step A: (5EV5-(Methoxymethylidene)-5.6.7-8-tetrahvdronaphthalene-2-carbonitrile
In a 250 mL round bottom flask, (methoxymethyl) (triphenyl)phosphonium chloride (4.0 g, 12 mmol) was dissolved in THF (20 mL). The solution was cooled to -78 °C. To above solution was added n-butyl lithium (3.50 mL, 2.50 M in Hexane, 8.8 mmol) dropwise. Reaction color
30 changed to orange. The mixture was cooled to -78 °C and to it was added 5-oxo-5,6,7,8- tetrahydronaphthalene-2-carbonitrile (1 g, 5.77 mmol). The reaction was let warm to RT and stirred at r.t for 18 hours. The reaction was then quenched with addition of saturated ammonium
MRL-ACV-00045 chloride (5 mL) and extracted with dichloromethane. The organic phase was washed with brine (5 mL), dried over anhydrous Na2S04, filtered, concentrated and purified by flash column chromatography (Hexane/BtOAc 0-50%). The desired product was obtained. *H NMR (500 MHz, CDCI3, δ in ppm): 7.0 -7.6 (3H, aromatic), 6.75 (IH, s), 3.88 (3H, s, Me), 3.0 (IH, t), 2.63 5 (2H, t), 2.23 (IH, t), 2.18 (IH, t), 1.65 (IH, t).
Step B: 5-Formyl-5,6,7,8-tetrahvdronaphthalene-2-carbonitrile
(5E)-5-(Memoxymemylidene)-5,6,7-84etrahydronaphthalene-2-carbonitrile (800 mg, 4.02 mniol) was dissolved in dichloromethane (6 mL). The solution was cooled to -78 °C. To above solution was added tribromoborane (6.0 mL, 1 M, 6.0 mmol) dropwise over a course of 5 min
10 and subsequently stirred for 30 min at -78 °C. To the reaction mixture was added saturated sodium bicarbonate, extracted with dichloromethane (2 x 20 mL). The organic phase was washed with brine (5 mL), dried over anhydrous Na2S04, filtered, concentrated and purified by flash column chromatography. *H NMR (500 MHz, CDCI3, δ in ppm): 9.6 (IH, s), 7.0 -7.6 (3H, aromatic), 1.8 -3.0 (6H, m).
2-Fluoro-4-(2-oxoethyl)benzonitrile:
Step A: Methyl O-fluoro-4-hydroxyphenvD acetate
(3-Fluoro-4-hydroxy-phenyl)-acetic acid (25 g, 150 mmol) was dissolved in methanol (100 mL),
20 and thionyl chloride (5 mL) was added dropwise to the solution. The solution was heated to 85 °C for 16 hours. The reaction mixture was allowed to cool and evaporated to dryness in vacuo. The residue was partitioned between ethyl acetate and saturated NaHC03. The organic layer was dried over MgS04, filtered, and the filtrate was evaporated to dryness under reduced pressure to yield the crude title compound as an off white solid (25.3 g). ½ NMR (500 MHz, CDCI3): δ
25 7.07 (d, J= 7.07 Hz, IH), 7.00-6.97 (m, 2H), 3.74 (s, 3H), 3.73 (s, 2H).
Step B: Methyl f3-fluoro-4-{|'('trifluoromethyl)sulfonyl1oxy)phenyl¼cetate
The crude phenol [methyl (3-fluoro-4-hydroxyphenyl)acetate, 25.3 g] was dissolved in anhydrous dichloromethane (200 mL). 4-Dimethylaminopyridine (1.68 g) was added, followed by triethylamine (23.0 mL, 165 mmol). The solution was then cooled to in a dry ice and acetone
30 bath while under nitrogen. Trifluoromethanesulfonic anhydride (27.9 mL, 165 mmol) was slowly added and the reaction mixture was allowed to warm to ambient temperature. The reaction mixture was then diluted with dichloromethane (200 mL) and washed with water (2 x 100 mL). The organic layer was dried over magnesium sulfate, filtered, and concentrated to dryness under reduced pressure and a cold water bath to yield the crude triflate. LC-MS (IE, m/z): 316 [M+l] .
35 Step C: Methyl (4-cvano-3-fluorophenyl') acetate
MRL-ACV-00045
The crude triflate (43.4 g) was subsequently dissolved in anhydrous dimethylformamide (100 mL). Zinc cyanide (7.2 g, 78 mmol) was added, and the solution was purged thoroughly with nitrogen. Tetrakis(triphenylphosphine) palladium (12 g, 14 mmol) was then added and the reaction mixture was heated to 80 °C for 4h. After allowing cooling to ambient temperature and 5 diluting with water (300 mL), ethyl acetate (500 mL) was added. The combined layers were filtered to remove any solids, the filtrate transferred to a separatory funnel, and the layers separated. The aqueous layer was re-extracted with ethyl acetate (1 x 100 mL), the organic portions were combined and dried over magnesium sulfate. The dry organics were then filtered and evaporated to dryness under reduced pressure and excess dimethylformamide was removed
10 by evaporation in vacuo at 65 °C for 1.5 h to yield the crude title compound (42 g). The crude product was purified through silica gel chromatography (ethyl acetate :hexanes = 2:3) to yield the title nitrile. ½ NMR (500 MHz, CDC13): δ 7.62 (t, J= 6.1 Hz, 1H), 7.23-7.21 (m, 2H), 3.76 (s, 3H), 3.73 (s, 2H). LC-MS (IE, mlz): 194 [M+l]+.
Step D: 2-Fluoro-4-("2-hvdroxyethvl)benzonitrile
15 L1BH4 (1.94 mL, 3.88 mmol, 2 M in THF) was added to a stirred solution of methyl(4-cyano-3- fluorophenyl)acetate (0.50 g, 2.59 mmol) in THF (25 ml) at 0 °C. The resulting solution was stirred for 12 h. Water (10 ml) was added, and the resulting solution was extracted with dichloromethane (2 χ 50 ml). The combined organic layers were dried over MgS04, filtered, and evaporated under reduced pressure. The residue was purified by column chromatography eluting
20 with EtOAc-Hexanes (7:3→ 1 : 1) to give the product as colorless oil. ½ NMR (500 MHz, CDC13) <S 7.60 (dd, J= 7.4, J= 7.1 Hz, lH ), 7.30 (s, 1H), 7.18 (dd, J= 7.3, J= 9.1 Hz, 1H), 3.95 (t, J= 6.2 Hz, 2H), 2.93 (t, /= 6.3 Hz, 2H).
Step E: 2-Fluoro-4-(2-oxoethyl)benzonitrile:
To a stirred solution of 2-fluoro-4-(2-hydroxyethyl)benzonitrile (0.40 g, 2.4 mmol) in dry 25 CH2C12 (20 mL) at 0 °C was added Dess-Martin periodinane (1.54 g, 3.6 mmol) in one portion.
The mixture was stirred for 12 h at rt and quenched with a 1 : 1 mixture of saturated Na2S2O3 (10 mL) and saturated NaHC<¾ (10 mL). The resulting mixture was diluted with CH2CI2 (70 mL) and the layers were separated. The aqueous phase was extracted with CH2C12 (2 χ 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to 30 give crude aldehyde as colorless oil. The residue was used in the next step without further purification. LC-MS (IE, mlz): 164.1 [M+l]+.
2.5-Difluoro-4-f2-oxoemvDbenzonitrile:
Step A: Di-ferf-butyl i4-cvano-2.5-difluorophenyPpropanedioate
MRL-ACV-00045
To a suspension of NaH (2.6 g, 64 mmol, and 60.0% dispersion in oil) in DMF (80 mL) was added a solution of di-teri-butyl malonate (3.57 g, 16.50 mmol) in DMF (20 mL) at 0 °C and this was stirred for 15 min. Subsequently, 2,4,5-trifluorobenzonitrile (3.0 g, 15.0 mmol) was added in one portion and the reaction mixture was stirred for 8 h at 80 C and three hours at room 5 temperature. Water (50 mL) was added and the aqueous layer was extracted with EtOAc (2 x 100 mL). The combined organic extracts were washed with water (50 mL) and brine (50 mL), dried over MgS04 and filtered. After evaporation in vacuo, the residue was purified by flash chromatography (20% EtOAc in hexane) to give 10.0 g of di-/erf-butyl (4-cyano-2,5~ difluorophenyl)propanedioate as a colorless oil. NMR (500 MHz, CDC13) δ 7.51 (dd, J= 10 5.5, J=> 5.4 Hz, 1H), 7.37 (dd, J= 5, /= 6 Hz, 1H), 4.84 (s, 1H), 1.50 (s, 18H). LC-MS (IE, m/z): 298.2 [(M+l)]+ - t-Bu].
Step B: (4-Cyano-2.5-difluorophenyl)acetic acid
To the di-ieri-butyl (4-cyano-2,5-difluorophenyl)propanedioate (10.0 g, 28.3 mmol) in dichloromethane (30 mL) was added triflouroacetic acid (10 mL) and the mixture stirred for 12 h
15 at room temperature. The solution was concentrated under reduced pressure and chased with toluene (2 x) to give the crude product as a yellowish oil (5g, 90%, 85% purity as indicated by NMR). The residue was used in the next step without further purification. *H NMR (500 MHz,
20 Step C: Methyl (4-cyano-2.5-difluorophenyl)acetate:
(4-Cyano-2,5-difluorophenyl)acetic acid (0.5 g, 2.5 mmol) was dissolved in methanol (20 mL), and thionyl chloride (0.5 mL) was added drop wise to the solution. The reaction was heated to 85" C for 4 hours. Then it was cooled and evaporated to dryness in vacuo. The residue was partitioned between ethyl acetate and saturated NaHC03. The organic layer was dried over
25 MgS0 , filtered, and the filtrate was evaporated to dryness under reduced pressure to yield the title compound after purification on silica gel (eluted with 5-20% ethyl acetate-hexanes) as an off white solid. *Η NMR (500 MHz, CDCI3): δ 7.31 (dd, J = 5.2, J= 5.2 Hz, 1H), 7.19 (dd, J= 5.7, J= 5.8 Hz, 1H), 3.73 (s, 3H), 3.71 (s, 2H). LC-MS (IE, m/z): 212 [M+l .
Step D: 2.5-Difluoro-4-(2-hvdroxyethyl)benzonitrile:
30 LiBH (1.45 mL, 2.9 mmol, 2 M in THF) was added to a stirred solution of methyl (4-cyano-2,5- difluorophenyl)acetate (0.47 g, 2.2 mmol) in THF (25 ml) at 0 °C. The resulting solution was stirred for 12 h. Water (15 ml) was added, and the resulting solution was extracted with dichloromethane (2 x 50 ml). The combined organic layers were dried over MgS04, filtered, and evaporated under reduced pressure to yield the product after purification on silica gel (eluted
35 with 5-30% ethyl acetate-hexanes) as a clear oil. ½ NMR (500 MHz, CDCI3) <5 7.32 (dd, J = 5.3, J= 5.0 Hz, lH), 7.23 (dd, J= 5.8, J= 5.7 Hz, 1H), 3.95 (t, ./= 6.2, J= 6.4 Hz, 2H), 2.98 (t, J = 6.4, J= 6.2 Hz, 2H). LC-MS (IE, m/z): 184 [M+l]+.
Step E: 2.5-Difluoro-4-(2-oxoethvDbenzonitrile:
MRL-ACV-00045
To a stirred solution of 2,5-diiluoro-4-(2-hydroxyethyl)benzonitrile (0.36 g, 2.0 mmol) in dry 0¾(¾ (30 mL) at 0 °C was added Dess-Martin periodinane (0.83 g, 2.0 mmol) in one portion. The mixture was stirred for 12 hours at RT and quenched with a 1 : 1 mixture of saturated Na2S203 (10 mL) and saturated NaHC03 (10 mL). The resulting mixture was diluted with 5 CH2CI2 (70 mL) and the layers were separated. The aqueous phase was extracted with CH2C12 (2 x 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to give crude aldehyde as light yellow oil. The residue was used in the next step without further purification and analysis.
2-Bromo-4-(2-oxoethyl)benzonitrile
Step A: Di-terf-butyl(3-bromo-4-cyanophenyl)malonate
To a suspension of NaH (0.37 g, 15.4 mmol, 60.0% dispersion in oil) in DMF (40 mL) was added a solution of di-t-butyl malonate (3.6 g, 16 mmol) in DMF (10 mL) at 0 °C and this was
15 stirred for 15 minutes. Subsequently, 2-bromo-4-fluorobenzonitrile (3.0 g, 15.0 mmol) was added in one portion and the reaction mixture was stirred for 8 hours at 80 °C and three hours at room temperature. Water (50 mL) was added and the aqueous layer was extracted with EtOAc (2 x 100 mL). The combined organic extracts were washed with water (50 mL) and brine (50 mL), dried over MgS04 and filtered. After evaporation in vacuo, the residue was purified by flash
20 chromatography (20% EtOAc in hexane) to give di-iert-Butyl (3-bromo-4-cyanophenyl)malonate as a light brown solid. *H NMR (500 MHz, DMSO-dg) δ 7.97 (d, J= 8 Hz, 1H), 7.88 (s, 1H), 7.60 (d, J= 8 Hz, 1H), 4.95 (s, 1H), 1.42 (s, 18H). LC- S (IE, mlz) 398 [M+l]+.
Step B: (3-Bromo-4-cvanophenyl) acetic acid
To the di-iert-buryl (3-bromo-4-cyanophenyl)malonate (2.2 g, 5.4 mmol) in dichloromethane (30 25 mL) was added triflouroacetic acid (10 mL) and the reaction mixture stirred for 12 h at room temperature. The solution was concentrated under reduced pressure and chased with toluene (2x) to give the crude product as a yellowish oil (lg, 77%, and 85% purity as indicated by NMR). The residue was used in the next step without further purification. ½ NMR (500 MHz, DMSO-dg) δ 12.80 (br s, 1H), 7.87 (d, J= 8 Ηζ,ΙΗ), 7.80 (s, 1H), 7.48 (d, J= 8 Ηζ,ΙΗ), 3.73 (s, 2H). LC-MS 30 (IE, »j/z): 240 [M+l]+.
Step C: Methyl (3-bromo-4-cvanophenyl)acetate
(3-Bromo-4-cyanophenyl)acetic acid (1.0 g, 4.2 mmol) was dissolved in methanol (20 mL), and thionyl chloride (0.5 mL) was added drop wise to the solution. The reaction was heated to 85 °C for 4 h. Then it was cooled to room temperature and evaporated to dryness in vacuo. The residue 35 was partitioned between ethyl acetate and sat. NaHC03. The organic layer was dried over
MgS04, filtered, and the filtrate was evaporated to dryness under reduced pressure to yield the
M L-ACV-00045 crude title compound as an off white solid. ½ NMR (500 MHz, CDCI3): δ 7.07 (d, /= 7.07 Hz, 1H), 7.00-6.97 (m, 2H), 3.74 (s, 3H), 3.73 (s, 2H). LC-MS (IE, mlz): 195.2 [(M+l) - C02CH3]+.
Step D: 2-Bromo-4-(2-hvdroxyethyflberizonitrile
5 LiBH4 (1.48 mL, 2.95 mmol, 2 M in THF) was added to a stirred solution of methyl (3-bromo-4- cyanophenyl)acetate (0.50 g, 2.0 mmol) in THF (25 ml) at 0 °C. The resulting solution was stirred for 12 h. Water (15 ml) was added, and the resulting solution was extracted with dichloromethane (2 x 50 ml). The combined organic layers were dried over MgS04, filtered, and evaporated under reduced pressure to yield the crude product as a cloudy oil. ½ NMR (500 10 MHz, CDCI3) δ 7.63 (s, 1H), 7.61 (d, J= 5.7, 1H), 7.33 (d, /= 7.8 Hz, 1H ), 3.93 (t, J= 1.6, /= 4.8 Hz, 2H), 2.92 (t, ./= 6.6, J= 5.1 Hz, 2H). LC-MS (IE, mlz): 210.1 [(M+l)]+ - OH].
Step E: 2-Bromo-4-f2-oxoethyl)benzonitrile:
To a stirred solution of 2-bromo-4-(2-hydroxyethyl)benzonitrile (0.51 g, 2.3 mmol) in dry C¾C12 (30 mL) at 0 °C was added Dess-Martin periodinane (1.45 g, 3.4 mmol) in one portion.
15 The mixture was stirred for 12 h at RT and quenched with a 1 : 1 mixture of saturated Na2S2C>3 (40 mL) and saturated NaHCC>3 (40 mL). The resulting mixture was diluted with CH2C12 (70 mL) and the layers were separated. The aqueous phase was extracted with CH2C12 (2 χ 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to give crude aldehyde as colorless oil. The residue was used in the next step without
20 further purification and analysis.
2-Methoxy~4-( 1 -oxopropan-2-vDbenzonitrile
Step A: Ethyl (3-methoxy-4-([(trifluoromethyl)sulfonyl1oxy)phenyl)acetate
25 The crude phenol [ethyl (4-hydroxy-3-methoxyphenyl) acetate, 12.0 g, 57 mmol] was dissolved in anhydrous dichloromethane (200 mL). 4-Dimethylaminopyridine (0.70 g, 0.10 equiv) was added, followed by triethylamine (9.6 mL, 68 mmol). The solution was then cooled to in a dry ice and acetone bath while under nitrogen. Trifluoromethanesulfonic anhydride (9.6 mL, 57 mmol) was slowly added and the reaction mixture was allowed to warm to ambient temperature. 30 The reaction mixture was then diluted with dichloromethane (200 mL) and washed with water (2 x 100 mL). The organic layer was dried over magnesium sulfate, filtered, and concentrated to dryness under reduced pressure to yield the crude triflate. LC-MS (IE, m/z): 269.0 [(M+l)- C02Ef]+.
Step B: Ethyl (4-cvano-3-methoxyphenvD acetate:
MRL-ACV-00045
The crude inflate (16.6 g) was subsequently dissolved in anhydrous dimethylformamide (100 mL). Zinc cyanide (3.4 g, 29 rnrnol) was added, and the solution was purged thoroughly with nitrogen. Tetrakis(triphenylphosphine) palladium (5.6 g, 4.8 mmol) was then added and the reaction mixture was heated to 80 °C for 4h. After allowing to cool to ambient temperature and 5 diluting with water (200 mL), ethyl acetate (400 mL) was added. The combined layers were filtered to remove any solids, the filtrate transferred to a separatory funnel, and the layers separated. The aqueous layer was re-extracted with ethyl acetate (2 x 100 mL), the organic portions were combined and dried over magnesium sulfate. The dry organics were then filtered and evaporated to dryness under reduced pressure and excess dimethylformamide was removed
10 by evaporation in vacuo at 65 °C for 1.5 h to yield the crude title compound (20 g). The crude product was purified through silica gel chromatography (ethyl acetate/hexanes, 2:3) to yield the title nitrile. ½ NMR (500 MHz, DMSO-£¾), δ 7.67 (d, /= 8.0 Hz, 1H), 7.18 (s, IH), 7.0 (d, J= 8.0 Hz, 1H), 4.10 (q, J= 7.1 Hz, 2H), 3.89 (s, 3H), 3.78 (s, 2H), 1.19 (t, ./= 7.1 Hz, 3H); LC- MS (IE, m/z): 220 [M + 1]+.
15 Step C: Ethyl 2-(4-cvano-3-methoxyphenyl'ipropanoate:
To a suspension solution of NaH (0.18 g, 4.6 mmol, 60% dispersion in mineral oil) in THF (50 mL) at °C under N2 arm was added a solution of ethyl (4-cyano-3-methoxyphenyl) acetate (1.0 g, 4.6 mmol) in THF (10 mL) dropwise and the mixture was stirred for 30 min at the same temperature. The mixture was then allowed to warm to ambient temperature. The mixture was
20 then allowed to cool back to 0 °C. Methyl iodide (0.284 mL, 4.56 mmol) was added and the reaction mixture was stirred for 1 h. The reaction mixture was acidified by 1 M hydrochloric acid and extracted with EtOAc. The organic layer was washed with brine, dried over anhydrous sodium sulfate, and concentrated in vacuo. The residue was purified by silica gel column chromatography (hexane/EtOAc 15/1) to give ethyl 2-(4-cyano-3-methoxyphenyl) propanoate as
25 a colorless oil. ½ NMR (500 MHz , CDC13) δ 7.53 (d, 1H, = 8 Hz ), 6.98 (d, 1H, /= 8 Hz ), 6.95 (s, 1H), 4.17 (q, 2H, J= 3.4 Hz), 3.97 (s, 3H), 3.76 (q, 1H, J= 9.1 Hz ), 1.53 (d, 3H, J= 7.1 Hz), 1.25 (t, 3H, J= 7.1 Hz); LC-MS (IE, m/z): 234 [M + 1]+.
Step D: 4-(l-Hydroxypropan-2-yl)-2-methoxybenzonitrile
L1BH4 (0.55 mL, 1.09 mmol, 2 M in THF) was added to a stirred solution of ethyl 2-(4-cyano-3- 30 methoxyphenyl) propanoate (0.17 g, 0.73 mmol) in THF (25 ml) at 0 °C. The resulting solution was stirred for 12 h. Water (15 ml) was added, and the resulting solution was extracted with dichloromethane (2 x 50 ml). The combined organic layers were dried over MgS04, filtered, and evaporated under reduced pressure. The residue was purified by column chromatography eluting with EtOAc-Hexanes (7:3→ 1 :1) to give an inseparable mixture of 4-(l-hydroxypropan-2-yl)-2 35 methoxybenzonitrile as a colorless oil. ½ NMR (500 MHz, CDCI3) S 7.49 (d, 1H, J= 7.9 Hz ), 6.88 (dd, 1H, /= 1.4 Hz ), 6.83 (s, 1H), 3.92 (s, 3H), 3.72 (d, 2H, J= 6.8 Hz), 2.97 (q, 1H, J= 6.8 Hz), 1.28 (d, 3H, /= 6.9 Hz); LC-MS (IE, m/z): 192.3 [M + 1]+.
Step E: 2-Methoxy-4-(l-oxopropan-2-yl)benzonitrile
MRL-ACV-00045
To a stirred solution of 4-(l-hydroxypropan-2-yl)-2-methoxybenzonitrile (0.12 g, 0.63 mmol) in dry CH2CI2 (30 mL) at 0 °C was added Dess-Martin periodinane (0.35 g, 0.82 mmol) in one portion. The mixture was stirred for 12 h at room temperature and quenched with a 1:1 mixture of saturated Na2S2C>3 (20 mL) and saturated NaHCC>3 (20 mL). The resulting mixture was 5 diluted with CH2C¾ (50 mL) and the layers were separated. The aqueous phase was extracted with CH2Cl2 (2 x 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to give crude aldehyde as colorless oil. The crude residue was used in the next step without further purification. LC-MS (IE, m/z): 190.3 [M + 1] .
2-Methoxy-4-(2-methyl-l-oxopropan-2-yl)benzonitrile:
Step A: Ethyl 2-(4-cvano-3-methoxyphenylV2-methyl propanoate
To a suspension solution of NaH (0.36 g, 9.1 mmol, 60% dispersion in mineral oil) in THF (50 mL) at °C under N2 was added a solution of ethyl (4-cyano-3-methoxyphenyl) acetate (1.0 g, 4.6
15 mmol) in THF (10 mL) dropwise and the mixture was stirred for 30 min at the same temperature.
The mixture was then allowed to warm to ambient temperature. The mixture was then allowed to cool back to °C. Methyl iodide (0.57 mL, 9.1 mmol) was added and the reaction mixture was stirred for 1 h. The reaction mixture was acidified by 1 M hydrochloric acid and extracted with EtOAc. The organic layer was washed with brine, dried over anhydrous sodium sulfate, and
20 concentrated in vacuo. The residue was purified by silica gel column chromatography
(hexane/EtOAc 15/1) to give ethyl 2-(4-cyano-3-methoxyphenyl)-2-methylpropanoate as a colorless oil. ½ NMR (500 MHz , CDCI3) 3 7.54 (d, 1H, = 8.0 Hz ), 7.02 (dd, 1H, J= 1.6 Hz), 6.95 (d, 1H, J= 1.4 Hz), 4.17 (q, 2H, J= 7.2 Hz), 3.96 (s, 3H), 1.61 (s, 6H), 1.23 (t, 3H, J= 7.1 Hz); LC-MS (IE, m/z): 248.3 [M + 1]+.
25 Step B: 4-n-Hvdroxy-2-methylpropan-2-yl')-2-methoxybenzonitrile
LiBH4 (0.48 mL, 0.97 mmol, 2 M in THF) was added to a stirred solution of ethyl 2-(4-cyano-3- methoxyphenyl)-2-methylpropanoate (0.16 g, 0.65 mmol) in THF (25 ml) at 0 °C. The resulting solution was stirred for 12 h. Water (15 ml) was added, and the resulting solution was extracted with dichloromethane (2 x 50 ml). The combined organic layers were dried over MgS04,
30 filtered, and evaporated under reduced pressure. The residue was purified by column
chromatography eluting with EtOAc-Hexanes (7:3→ 1 :1) to give an inseparable mixture of 4- (l-hydiOxy-2-methylpropan-2-yl)-2-methoxybenzonitrile as a colorless oil. H NMR (500 MHz, CDCI3) δ 7.55 (d, 1H, J= 8.0 Hz), 6.88 (d, 1H, 7= 8.0 Hz ), 7.02 (s, 1H), 3.98 (s, 3H), 3.69 (s, 2H), 1.38 (s, 6H); LC-MS (IE, m/z): 206.3 [M + 1]+.
35 Step C: 2-Μ6ΐ¾ο ν-4-(2^6Φν1-1-ο ορΓο 3η-2-ν1^6ηζοηίΡΊΐ6
MRL-ACV-00045
To a stirred solution of 4^1-hydroxy-2-memylpropan-2-yl)-2-methoxybenzonitrile (0.12 g, 0.58 mmol) in dry ΟΗ2(¾ (30 mL) at 0 °C was added Dess-Martin periodinane (0.32 g, 0.76 mmol) in one portion. The mixture was stirred for 12 h at RT and quenched with a 1 : 1 mixture of saturated Na2S203 (20 mL) and saturated NaHC03 (20 mL). The resulting mixture was diluted 5 with CH2C12 (50 mL) and the layers were separated. The aqueous phase was extracted with CH2C12 (2 x 50 mL). The combined organic phases were washed with brine, dried (Na2SC>4), and concentrated in vacuo to give crude aldehyde as colorless oil. The crude residue was used in the next step without further purification. LC-MS (IE, m/z): 204.4 [M + 1]+.
Γ6-( 1 H-tetrazol- 1 -vl)pyridin-3-vl1acetaldehvde :
Step A: 2~[6-(lH-tettazol-l-vDpyridin-3-yl1emanol
L1BH4 (0.48 mL, 0.96 mmol, 2 M in THF) was added to a stirred solution of ethyl [6-(lH- tetrazol-l-yl)pyridin-3-yl]acetate (0.150 g, 0.64 mmol) in THF (20 ml) at 0 °C. The resulting
15 solution was stirred for 12 h. Water (5 ml) was added, and the resulting solution was extracted with dichloromethane (2 x 50 ml). The combined organic layers were dried over MgS04, filtered, and evaporated under reduced pressure to yield the product after flash chromatography (eluted with 10-50% ethyl acetate in hexanes) as a colorless oil. lB NMR (500 MHz, CDCI3) d 9.51 (s, 1H), 8.43 (br s, 1H), 8.01 (dd, /= 2.7, = 2.7 Hz, 1H ), 7.91 (dd, J= 2.1, = 2.0 Hz,
20 1H), 3.99 (br s, 2H), 3.00 (t, J= 6.1, = 6.2 Hz, 2H). LC-MS (IE, mlz): 164.1 [(M+l)+ - 28].
Step B: [6-(lH-tetrazol-l-vl)pvridin-3-yl1acetaldehvde
To a stirred solution of 2-[6-(lH-tetrazol-l-yl)pyridin-3-yl]ethanol (0.035 g, 0.18 mmol) in dry CH2C¾ (20 mL) at 0 °C was added Dess-Martin periodinane (0.12 g, 0.28 mmol) in one portion. The mixture was stirred for 12 h at rt and quenched with a 1 : 1 mixture of saturated Na2S203 (5
25 mL) and saturated NaHC03 (5 mL). The resulting mixture was diluted with CH2CI2 (50 mL) and the layers were separated. The aqueous phase was extracted with CH2C12 (2 x 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to give crude aldehyde as a light yellow solid. The residue was used in the next step without further purification. LC-MS (IE, mlz): 162.1 [(M+l)+ - 28].
2-Methoxy-4-(2-oxopropyl)benzonitrile
Step A: 4-(2-Hvdroxypropyl)-2-methoxybenzonitTile
MRL-ACV-00045
To a stirred solution of 1.48 g (8.47 mmol) of 2-methoxy-4-(2-oxoethyl)benzonitrile in dichloromethane (30 mL) at 0 °C was added 2.82 mL (8.47 mmol) of a 3.0 M solution of methylmagnesium bromide in THF. The reaction mixture was allowed to warm up to RT and stirred for 12 h. The reaction was then quenched by the addition of 10 mL of 1 N hydrochloric 5 acid and extracted with dichloromethane (2 χ 30 mL). The combined organic extracts were dried with magnesium sulfate, filtered, and concentrated in vacuo. The crude residue was purified on silica (30% EtOAc/hexanes as eluent) to afford 4-(2-hydroxypropyl)-2-methoxybenzonitrile as a clear liquid. ½ NMR (500 MHz, CDC13) δ 7.47 (d, 1H, = 7.8 Hz ), 6.85 (dd, 1H, J= 3.4 Hz ), 6.82 (s, 1H), 4.05 (m, 1H), 3.93 (d, 2H), 3.91 (s, 3H), 1.25 (d, 2H, J= 6.1 Hz). LC-MS (IE, 10 mlz): 192.3 [M+l)+.
Step B: 2-Methoxy-4-(2-oxopropyl)benzonitrile
To a stirred solution of 4-(2-hydroxypropyl)-2-methoxybenzonitrile (1.45 g, 7.6 mmol) in dry CI¾C12 (30 mL) at 0 °C was added Dess-Martin periodinane (4.2 g, 9.8 mmol) in one portion. The mixture was stirred for 12 h at RT and quenched with a 1 : 1 mixture of saturated a2S2C>3
15 (20 mL) and saturated NaHC03 (20 mL). The resulting mixture was diluted with CH2<¾ (50 mL) and the layers were separated. The aqueous phase was extracted with CH2CI2 (2 * 50 mL). The combined organic phases were washed with brine, dried (Na2S04), and concentrated in vacuo to give 2-methoxy-4-(2-oxopropyl)benzonitrile as an oil. The crude residue was used in the next step without further purification. ½ NMR (500 MHz, CDCI3) δ 7.55 (dd, 1H, J= 1.6
20 Hz ), 6.87 (d, 1H, J= 7.8 Hz ), 6.83 (s, 1H), 3.96 (s, 3H), 3.79 (s, 2H), 2.25 (s, 3H).
6-Fluoro-4-formyl-3^-dihva^o-2ff-chromene-7-carbonitrile
Step A: 6-Fluoro-7-hvdroxy-2.3-dihvdro-4//-chromen-4-one
25 In a 15 mL vial was added 4-fluorobenzene-l,3-diol (500 mg, 3.9 mmol) and 3-chloropropanoic acid (424 mg, 3.9 mmol) and trifluoromethanesulfonic acid (2 mL). The mixture was heated to 80 °C and stirred at that temperature for 4 hour. The reaction was cooled and poured into water (10 mL). The product was extracted with ethyl acetate, dried over anhydrous a2S0 , filtered, concentrated. To the dark red solid obtained was added sodium hydroxide (2 N, 5 mL) and the
30 solution was let stirred at RT for 18 hours. The mixture was neutralized with 2 N HCl, extracted with EtOAc. The organic phase was dried over anhydrous Na2SC>4, filtered, concentrated. The crude was used to next step without purification. *H NMR (500 MHz, CDCI3, δ in ppm): 7.61 (1H, d, J= 10.3 Hz), 6.56(1H, d, ,/= 3.1 Hz), 4.48 (2H, t), 2.78 (2H, t).
Step B: 6-Fluoro-4-oxo-3.4-dihvdro-2ff-chromen-7-yl trifluoromethanesulfonate
L-ACV-00045
In a 100 mL round bottle flask was added 6-Fluoro-7-hydroxy-2,3-dihydro-4i?-chromen-4-one (220 mg, 1.2 mmol) and pyridine (10 mL). The solution was cooled to 0 °C.
Trifluoromethylsulfonyl anhydride (0.26 mL, 1.6 mmol) was added to above solution dropwise. The reaction was warmed to RT and stirred at that temperature for 2 hours. The mixture was diluted with EtOAc, washed with saturated CuS04, brine and water. The organic phase was dried over MgS04, filtered and concentrated. Above crude was purified on flash column chromatography to give the product. LC-MS (IE, m/z): 315.2 [M + 1] .
Step C: 6-Fluoro-4-oxo-3.4-dihvdro-2ii -chromene-7-carbonitrile
In a 15 mL microwave tube was added 6-Fluoro-4-oxo-3,4-dihydro-2//-chromen-7-yl
10 trifluoromethanesulfonate (370 mg, 1.2 mmol), zinc cyanide (138 mg, 1.2 mmol) and
tetrakis(triphenylphosphine)palladium (136 mg, 0.19 mmol, 0.1 eq). The tube was sealed, degased and filled with N2. The mixture was heated to 130 °C in microwave reactor for 30 minutes. The reaction was cooled down, extracted with EtOAc, washed with brine and water. The organic phase was dried over MgS04, filtered and concentrated. Above crude was purified
15 on flash column chromatography (0 - 100% EtO Ac/Hex) to give the product as white crystal.
LC-MS (IE, m/z): 192.3 [M + 1]+.
Step D : (4E)-6-fluoro-4-(memyoxymethylideneV3.4-dihydro-2g-chromene-7-carbonitrile In a 250 mL round bottom flask, (methoxymethyl) (triphenyl)phosphonium chloride (1.3 g, 3.8 mmol) was dissolved in THF (20 mL). The solution was cooled to -78 °C. To above solution
20 was added n-butyl lithium (0.49 mL, 2.50 M in Hexane, 1.05 mmol) dropwise. Reaction color changed to orange. The mixture was cooled to -78 °C and to it was added 6-Fluoro-4-oxo-3,4- dihydro-2.ff-chromene-7-carbonitrile (100 mg, 0.52 mmol). The reaction was let warm to RT and stirred at RT for 18 hours. The reaction was then quenched with addition of saturated ammonium chloride (5 mL) and extracted with dichloromethane. The organic phase was washed
25 with brine (5 mL), dried over anhydrous Na2S04, filtered, concentrated and purified by flash column chromatography (hexane/EtOAc 0-50%). The desired product was obtained. LC-MS (IE, m/z): 220.3 [M + l]+.
Step E: 6-Fluoro-4-formyl-3.4-dihydro-2g-chromene-7-carbonitrile
(4E)-6-fluoro-4-(methyoxymethylidene)-3,4-dmydro-2ii-chromene-7-carbonitrile (38 mg, 0.17
30 mmol) was dissolved in dichloromethane (6 mL). The solution was cooled to -78 °C. To above solution was added tribromoborane (260 μί, 1 M, 0.26 mmol) dropwise. The reaction was stirred for 30 min at -78 °C. To the reaction mixture was added saturated sodium bicarbonate, extracted with dichloromethane (2 x 20 mL). The organic phase was washed with brine (5 mL), dried over anhydrous Na2S04, filtered, concentrated and used without purification.
5-Fluoro-2-methoxY-4-(2-oxoethyl)benzonitrile
MRL-ACV-00045
Step A: 5-fluoro-4-f2-hvdroxyethyl)-2-methoxvbenzonitrile
To a solution of methyl (4-cyano-2-fluoro-5-methoxyphenyl)acetate (212 mg, 0.95 mmol) in tetrahydrofuran (4 mL) at 0 C was added lithium borohydride (2.0 M solution in tetrahydrofuran, 0.62 mL). The mixture warmed slowly to room temperature and was quenched
5 with saturated sodium bicarbonate and diluted with ethyl acetate. The layers were separated and the aqueous extracted with ethyl acetate (2x). The combined organics were washed with water and brine, then dried (Na2S04), filtered and concentrated. The residue was purified by column chromatography (MPLC, 5-60% Ethyl Acetate : Hexanes) to provide 5-fluoro-4-(2- hydroxyethyl)-2-methoxybenzonitrile. 1H- MR (500 MHz, CD3OD) δ ppm 7.22 (m,lH), 6.92
10 (m,lH), 3.93(s, 3H), 3.88 (m, 2H), 2.95 (m, 2H), 2.29 (br s, 1H).
Step B: 5-Fluoro-2-methoxy-4-i2-oxoethyPbenzomtrile
To a solution of 5-fluoro-4-(2-hydroxyethyl)-2-methoxybenzonitrile (175 mg, 0.90 mmol) in dichloromethane (4 mL) was added Dess-Martin periodinane (530 mg, 1.3 mmol) at RT. The mixture stirred at roomtemperature for 2 h, then was diluted with saturated sodium bicarbonate 15 and saturated sodium thiosulfate and stirred 30 min. The mixture was extracted with
dichloromethane (3x) and the combined organics dried (MgS04), filtered and concentrated to provide 5-fluoro-2-methoxy-4-(2-oxoethyl)benzonitrile which was used without further purification. LC-MS (IE, m z): 194.2 [M + 1]+.
(6SV6-Piperazin-l-yl-5.6J.8-tetrahvdronaphthalene-2-caibonitrile
Step A: ferf-butyl (2SV6-cvano-l,2,3.4-tetrahvdronaphthalen-2-yl]carbamate
A mixture of 6-amino-5,6,7,8-tetrahydronaphthalene-2-carbonitrile (1.0 g, 5.8 mmol, prepared following the precedure published in ,/. Org. Chem. 1995, 60, 4324-4330) and Boc anhydride in 25 DCM was stirred at RT for 16 hours. The mixture was concentrated and purified by MPLC to furnish 1.14 g of iert-butyl (6-cyano-l,2,3,4-tetrahydronaphthalen-2-yl)carbamate (72% yield). LC-MS (IE, m/z): 273 [M + 1]+.
The enantiomers were separated using the AD column with 5% EtOH/heptane. The first peak was assumed as the tert-butyl [(2S)-6-cyano-l,2,3,4-tetrahydronaphthalen-2-yl]carbamate, and 30 the second peak was assumed as the /er/-butyl [(2R)-6-cyano-l ,2,3,4-tetrahydronaphthalen-2- yljcarbamate.
Step B: r6SV6-Amino-5,6,7.8-tetrahvdronaphthalene-2-carbonitrile
The first peak was treated with TFA for 20 minutes to remove the Boc group. When LC suggested the reaction was done, TFA was removed to afford (6S)-6-arnino-5,6,7,8- 35 tetrahydronaphthalene-2-carbonitrile. LC-MS (IE, m/z): 173 [M + 1]+.
Step C: (6SV6-Piperazin- 1 -yl-S^ .S-tetrahydronaphthalene^-carbonitrile
MRL-ACV-00045
To a solution of teri-butyl diallylcarbamate (0.63 g, 3.2 mmol) in DCM at -78 °C was bubbled ozone until a blue color persisted. Nitrogen was bubbled through the reaction to remove excess ozone, followed by addition of a DCM solution of (6S)-6-amino-5,6,7,8-tetrahydronaphthalene- 2-carbonitrile (0.14 g, 0.80 mmol) and triethylamine (0.22 mL, 1.6 mmol). Then NaB(OAc)3H
5 (0.85 g, 4.0 mmol) was added to the reaction. The mixture was allowed to warm to RT and stir overnight. LC showed formation of the desired product, which was separated by prep-TLC to furnish 87 mg of ieri-butyl 4-[(2S)-6-cyano-l,2,3,4-tetrahydronaphthalen-2-yl]piperazine-l- carboxylate. LC-MS (IE, m/z): 173 [M + 1]+. The material was further treated with TFA to afford crude (6S)-6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile.
( 6RV6-Piperazin- 1 -yl-5.6.7.8-tetrahvdronaphthalene-2-caTbonitrile
(6R)-6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile was prepared following the same procedure as INTERMEDIATE 3 la from tert-butyl (e-cyano-l^^^-tetrahydronaphthalen- 15 2-yl)carbamate ieri-butyl [(2R)-6-cyano-l,2I3,4-tetrahydronaphthalen-2-yl]carbamate.
4-(2-Oxoethyl)-2-(trifluoromethoxy)benzonitrile
The preparation of the title compound in Step A was based on a literature procedure as found in 20 Organic Letters, 2007, 9 (9), 1711-1714.
Step A: Methyl C4-cvano-3-trifluoromethoxyphenyl)acetate
A suspension of methyl (4-chloro-3-u ifluoromethoxyphenyl)acetate (4.8 g, 17.8 mmol) ΐη Ν,Ν- dimethylacetamide (50 mL) in a 250 mL round bottomed flask was degassed by bubbling nitrogen for 15 minutes. To this suspension was then added zinc dust (0.23 g, 3.55 mmol), DPPF
25 (0.79 g, 1.42 mmol), Pd2(dba)3 (0.65 g, 0.71 mmol), and Zn(CN)2 (2.50 g, 21.3 mmol) at room temperature. The nitrogen purge was continued for another 15 minutes before the mixture was heated in a 120 °C oil bath for 12 hours. LC-MS indicated that the starting material was consumed to give the product. LC-MS (IE, m/z): 260 [M + 1] . The mixture was partitioned twice between water and ethyl acetate. The organic layers were dried over sodium sulfate,
30 filtered and concentrated in vacuo. The residue was purified on a silica gel column (5-20% ethyl acetate/hexanes) to yield the title product as a yellowish solid. ½-NMR (500 MHz, CDC13) δ ppm 3.77 (s, 2H), 3.78 (s, 3H), 7.39 (d, J= 7.5 Hz, 1H), 7.40 (s, 1H), 7.72 (d, J= 7.5 Hz, 1H). Step B: (4-Cvano-3-trifluoromethoxyphenyl)acetic acid
MRL-ACV-00045
To a solution of methyl (4-cyano-3-trifluoromethoxyphenyl)acetate (2.15 g, 8.3 mmol) in 1:1 THF:MeOH (10 mL each) was added LiOH-H20 (0.42 g, 10.0 mmol) in water (30 mL). The reaction mixture was stirred at room temperature for 12 hours at which time the starting ester was consumed by TLC (25% ethyl acetate/hexanes). The mixture was concentrated in vacuo and 5 acidified to pH < 3 by dropwise addition of 12N HC1. The acidified solution was then extracted with ethyl acetate, dried over sodium sulfate and concentrated in vacuo to yield the crude title product. LC-MS (IE, m/z): 246 [M + if. "Ή-NMR (500 MHz, CDC13) δ ppm 3.81 (s, 2H), 7.39 (d, J= 7.5 Hz, 1H), 7.40 (s, 1H), 7.75 (d, J= 7.5 Hz, 1H).
Step C: 4-(2-HvdroxethylV2-(trifluoromethoxy")benzonitrile
10 A suspension of (4-cyano-3-trifluoromethoxyphenyl)acetic acid (200 mg, 0.82 mmol) in THF (8 mL) was treated with borane dimethyl sulfide complex (2M, 0.41 mL, 0.82 mmol) and the reaction was stirred overnight at room temperature. The reaction was not complete after 20 hours, so an additional aliquot of borane dimethyl sulfide complex (2M, 0.41 mL, 0.82 mmol) was added. After stirring for another 1 hour at room temperature, the reaction was quenched
15 with methanol and the mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a CombiFlash Rf (12 gm, gradient 10-80% ethyl acetate in hexanes) to afford the title alcohol (142 mg) as an oil. ¾- NMR (500 MHz, CDC13) δ ppm 1.62 (s, 1H), 2.971 (t, J = 6.4 Hz, 2H), 3.936 (t, J= 6.4 Hz,
20 2H), 7.315 (s, 1H), 7.322 (d, = 8.5 Hz, 1H), 7.660 (d, J= 8.5 Hz, 1H).
Step D: 4-(2-Oxoethyl)-2-('trifiuoromethoxy'>benzonitrile
A solution of 4-(2-hydroxethyl)-2-(trifluorome1hoxy)benzonitrile (140 mg, 0.61 mmol) in DCM (3 mL) was treated with Dess-Martin periodinane (360 mg, 0.85 mmol) and was stirred at room temperature for 1.5 hours. MS LC showed mostly aldehyde product by UV (no M+l detected in 25 the MS) and a small amount of alcohol. After a total of 2.25 hours the reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly in subsequent reductive amination reactions.
2-Chloro-4-(2-oxoethyl benzonitrile
Step A: 2-Chloro-4-(2-hvdroxethyl)benzonitrile
A suspension of (3-chloro-4-cyanophenyl)acetic acid (200 mg, 1.02 mmol) in THF (8 mL) was treated with borane dimethyl sulfide complex (2M, 0.5 mL, 1.0 mmol) and the reaction was stirred overnight at room temperature. The reaction was not complete after 20 hours, so an additional aliquot of borane dimethyl sulfide complex (2M, 0.5 mL, 1.0 mmol) was added. After
MRL-ACV-00045 stirring for another 1 hour at room temperature, the reaction was quenched with methanol and the mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous layer was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue (199 mg) was purified on a CombiFlash Rf (12 gm, gradient 10- 5 80% ethyl acetate in hexanes) to afford the title alcohol as an oil. *H-NMR (500 MHz, CDC13) δ ppm 1.62 (s, 1H), 2.925 (t, J= 6.4 Hz, 2H), 3.92 (t, J= 6.4 Hz, 2H), 7.27 (d, J = 7.5 Hz, 1H), 7.44 (s, 1H), 7.62 (d, J= 8.1 Hz, 1H).
Step B: 2-Chloro-4-(2-oxoethyDbenzonitrile
A solution of 2-chloro-4-(2-hydroxethyl)benzonitrile (160 mg, 0.88 mmol) in DCM (3 mL) was 10 treated with Dess-Martin periodinane (520 mg, 1.2 mmol) and was stirred at room temperature for 1.5 hours. LC-MS showed an aldehyde peak by UV (no M+1 detected in the MS) and a small amount of alcohol starting material. After a total of 2.25 hours the reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give 15 crude title aldehyde as an oil which was used directly in subsequent reductive animation
reactions.
3-Fluoro-2-metfaoxy-4-(2-oxoemvDbenzom^rile
20 Step A: S-Fluoro^-methoxy^^-hydroxethvDbenzonitrile
A suspension of (4-cyano-2-fluoro-3-methoxyphenyl)acetic acid (200 mg, 0.96 mmol) in THF (8 mL) was treated with borane dimethyl sulfide complex (2M, 0.96 mL, 1.9 mmol) and the reaction was stirred for 3 hours at room temperature. The reaction was quenched with methanol and the mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous was
25 extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a CombiFlash Rf (12 gm, gradient 10-80% ethyl acetate in hexanes) to afford the title alcohol as an oil. LC-MS (IE, m/z): 196 [M + 1], ½- MR (500 MHz, CDCI3) δ ppm 1.60 (br s, 1H), 2.891 (t, 7= 6.4 Hz, 2H), 3.834 (t, J= 6.4 Hz, 2H), 4.055 (s, 3H), 6.952 (t, J= 8.1 Hz, 1H), 7.62 (d, J= 8.1 Hz, 1H).
30 Step B: 3-Fluoro-2-methoxy-4-f2-oxoethvDbenzonitrile
A solution of 3-fluoro-2-memoxy-4-(2-hydroxethyl)benzonitrile (60 mg, 0.31 mmol) in DCM (5 mL) was treated with Dess-Martin periodinane (183 mg, 0.43 mmol) and was stirred at room temperature for 2.5 hours. LC-MS showed the aldehyde product peak by UV (no M+1 detected in the MS) and a small amount of starting material alcohol. The reaction was quenched by
35 partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate (3x).
The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give
MRL-ACV-00045
5 4-(2-Oxoethyl)naphthalene- 1 -carbonitrile
Step A: 4-(2-hydroxyemvDnaphthalene-l -carbonitrile
A suspension of (4-cyanonaphthalen-l-yl)acetic acid (100 mg, 0.47 mmol) in THF (6 mL) was treated with borane dimethyl sulfide complex (2M, 0.47 mL, 0.94 mmol) and the reaction was stirred for 3 hours at room temperature. The reaction was quenched with methanol and the
10 mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a CombiFlash Rf (12 gm, gradient 10-80% ethyl acetate in hexanes) to afford the title alcohol as an oil. XH-NMR (500 MHz, CDCI3) δ ppm 1.80 (br s, 1H), 3.48 (t, J= 6.4 Hz, 2H), 4.10 (t, J= 6.4 Hz, 2H), 7.52 (d, = 7.3 Hz, 1H), 7.75 (m, 2H),
15 7.92 (d, J= 7.2 Hz, 1H), 8.22 (d, J= 8.2 Hz, 1H),. 8.34 (d, J= 8.0 Hz, 1H).
Step B: 4-(2-OxoethvDnaphthalene-l -carbonitrile
A solution of 4-(2-hydroxyethyl)naphthalene-l -carbonitrile (25 mg, 0.13 mmol) in DCM (4 mL) was treated with Dess-Martin periodinane (75 mg, 0.18 mmol) and was stirred at room temperature for 3 hours. The reaction was quenched by partitioning with DCM and water 20 containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give the title aldehyde as an oil which was used directly in subsequent reductive amination reaction.
25 2-Ethoxy-4-f2-oxoethyl)benzonitrile
Step A: 2-rEthoxy)-4-(2-hvdroxethvnbenzonitrile
A suspension of (4-cyano-3-ethoxvphenyl)acetic acid (100 mg, 0.49 mmol) in THF (5 mL) was treated with borane dimethyl sulfide complex (2M, 0.49 mL, 0.98 mmol) and the reaction was stirred 1 hour at room temperature. The reaction was not complete, so an additional aliquot of 30 borane dimethyl sulfide complex (2M, 0.49 mL, 0.98 mmol) was added. After stirring for another 1 hour at room temperature, the reaction was quenched with methanol and the mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a silica gel column (gradient 20-50% ethyl acetate in
MRL-ACV-00045 hexanes) to afford the title alcohol as an oil. Ή-NMR (500 MHz, CDC13) δ ppm 1.451 (t, J= 7.0 Hz, 3Η), 1.76 (br s, 1H), 2.865 (t, J= 6.3 Hz, 2H), 3.863 (t, J= 6.3 Hz, 2H), 4.127 (q, J= 7.0 Hz, 2H), 6.814 (s, 1H), 6.841 (d, J= 7.9 Hz, 1H), 7.449 (d, /= 7.7 Hz, 1H).
Step B: 2-(¾moxy)4-(2-oxoemviy benzonitrile
5 A solution of 2-(ethoxy)-4-(2-hydroxethyl)benzonitrile (56 mg, 0.29 mmol) in DCM (5 mL) was treated with Dess-Martin periodinane (250 mg, 0.59 mmol) and was stirred at room temperature for 2.5 hours. The reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give the title aldehyde as an oil which was used 10 directly in subsequent reductive amination reactions.
4-(2-OxoethylV2.3.5-trifluorobenzonitrile
Step A: 4-(2-Hvdroxethyl)-2.3,5-trifluorobenzonitrile
15 A suspension of (4-cyano-2,3,6-trifluorophenyl)acetic acid (140 mg, 0.65 mmol) in THF (8 mL) was treated with borane dimethyl sulfide complex (2M, 0.65 mL, 1.30 mmol) and the reaction was stirred for 3 hours at room temperature. The reaction was quenched with methanol and the mixture was partitioned with ethyl acetate and 2N HCl/water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and
20 evaporated. The residue was purified on a silica gel column (gradient 30-50% ethyl acetate in hexanes) to afford the title alcohol as an oil. ^ MR (500 MHz, CDCI3) δ ppm 1.50 (br s, 1H), 2.959 (t, = 6.5 Hz, 2H), 3.820 (t, J= 6.5 Hz, 2H), 7.064 (br t, 1H).
Step B: 4-(2-Oxoethyl)-2.3.5-trifluorobenzonitrile
A solution of 4-(2-hydroxethyl)-2,3,5-trifluorobenzonitrile (44 mg, 0.22 mmol) in DCM (5 mL) 25 was treated with Dess-Martin periodinane (186 mg, 0.44 mmol) and was stirred at room
temperature for 1.5 hours when another aliquot of periodinane (50 mg) was added. After 2.5 hours, the reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium sulfite (3x). The organic layer was then washed with brine, dried over sodium thiosulfate and evaporated to give the title aldehyde as an oil which was used directly in 30 subsequent reductive amination reactions.
3-Chloro-2-fluoro-4-(2-oxoethyl)benzonitrile
MRL-ACV-00045
Step A: ferf-Butyl methyl g-cMoro^-cvano-S-fluorophenvDmalonate
/erf-Butyl methyl malonate (7.5 g, 43 mmol) in anhydrous DMF (50 mL) under nitrogen was cooled in an ice bath. Sodium hydride (60% in mineral oil, 1.00 g, 42 mmol) was added portionwise over 5 minutes. The reaction was allowed to warm to room temperature for 30 5 minutes at which time all was in solution and hydrogen gas had ceased. To the solution was then added 2,4-difluoro-3-chlorobenonitrile (5.0 g, 29 mmol) as a solid in one portion. The reaction was heated in a 90 °C oil bath for 4 hours and then stirred at room temperature for 16 hours. The reaction was quenched by addition of 2N HCl in water. The mixtur e was partitioned with ether (2x), and the organic layers were washed with brine, dried over sodium sulfate and evaporated in
10 vacuo. TLC (15% ethyl acetate/hexanes) indicated a small amount of di-fluoro starting material, but mostly the desired product and excess malonate. The crude residue was purified by flash chromatography (5-10% % ethyl acetate/hexanes to elute excess malonate and starting material, then 10-20% ethyl acetate/hexanes for products). The first product fractions were a mixture with some of the minor t-butyl methyl (2-chloro-6-cyano-3-fluorophenyl)malonate side product
15 isomer (900 mg, mostly desired title product by NMR), then later fractions were clean desired title isomer. ^NMR (500 MHz, CDC13) δ ppm 1.464 (s, 9H), 3.793 (s, 3H), 5.145 (s, 1H), 7.448 (d, ./= 8.3 Hz, 1H), 7.560 (dd, ./= 6.2 and 8.3 Hz, 1H).
Step B: Methyl (2-chloro-4-cyano-3-fluorophenyl)acetate
To a solution of t-butyl methyl (2-chloro-4-cyano-3-fluorophenyl)malonate (4.8 g, 15 mmol) in 20 DCM (50 mL) was added TFA (50 mL) at room temperature and the mixture was aged for 20 hours. LC-MS and TLC (20% ethyl acetate/hexanes) indicated lack of starting malonate diester, but still some mono-acid/mono-ester intermediate. The volatiles were removed in vacuo and the residue was taken up in methanol and heated to reflux for 1 hour. The volatiles were again removed in vacuo and the residue was purified on a CombiFlash Rf (40 gm, 10-40% ethyl acetate 25 /hexanes) to give several main fractions of clean title product by NMR. 1H-NMR (500 MHz, CDCI3) δ ppm 3.734 (s, 3H), 3.860 (s, 2H), 7.234 (d, J= 8.0 Hz, 1H), 7.512 (dd, 7= 6.1 and 8.0 Hz, 1H).
Step C: (S-Chloro^-fluoro^^-hvdroxyethvnbenzonitrile
A suspension of methyl (2-cWoro-4-cyano-3-fluorophenyl)acetate (400 mg, 1.8 mmol) in THF (5 30 mL) was treated with lithium borohydride solution in THF (2M, 1.1 mL, 2.2 mmol) and the reaction was stirred overnight at room temperature. The reaction was quenched with 2N HCl and the mixture was partitioned with ethyl acetate and water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a CombiFlash Rf (24 gm, gradient 10-40% ethyl acetate 35 in hexanes) to afford the title alcohol. *H-NMR (500 MHz, CDCI3) δ ppm 1.66 (br s, 1H),
3.088 (t, J= 6.4 Hz, 2H), 3.922 (t, J= 6.4 Hz, 2H), 7.242 (d, J= 8.1 Hz, 1H), 7.469 (dd, J= 6.5 and 8.1 Hz, 1H).
Step D: (3-Chloro-2-fluoro-4-(2-oxoethyr)benzonitrile
MRL-ACV-00045
A solution of 3-chloro-2-fiuoro-4-(2-hydroxethyl)benzonitrile (62 mg, 0.31 mmol) in DCM (6 mL) was treated with Dess-Martin periodinane (263 mg, 0.621 mmol) and was stirred at room temperature for 2 hours. The reaction was quenched by stirring with water containing sodium bicarbonate and sodium sulfite for 30 minutes. The mixture was extracted twice with DCM and 5 the organic layers were washed with brine, dried over sodium sulfate and evaporated to give the crude title aldehyde which was used directly in subsequent reductive animation reactions. NM of the crude mixture indicated a mixture of aldehyde and some periodinane by-product. *H-
NMR (500 MHz, CDC13) 6 ppm 4.032 (s, 2H), 7.190 (d, J= 8.0 Hz, 1H), 7.571 (d, J = 8.1 Hz, 1H), 9.820 (s, 1H).
0-Chloro-2-memoxy-4-(2-oxoemvDbenzonitriie
Step A: Methyl (2-chloro-4-cvano-3-methoxyphenyl¼cetate
A solution of methyl (2-chloro-4-cyano-3-fluorophenyl)acetate (1.40 g, 6.2 mmol) from example 15 XX, Step B, was divided into 2 reactions in 2x20 mL Micro Wave (MW) vials, potassium carbonate (0.85 g, 6.2 mmol each vial) and MeOH (15 mL each vial) were added. Each reaction was heated at 130 °C for 60 minutes. The reactions were combined and concentrated, the residue was diluted with water, acidified with 2M HCl and extracted 2x with ethyl acetate, and the organic layers were washed with brine, dried over sodium sulfate and evaporated in vacuo. The 20 residue was taken up in 1 : 1 MeOH:DCM (40 mL) and excess 2M trimethylsilyldiazomethane in ether was added until the yellow color persisted, the excess was quenched with acetic acid and the solution was concentrated in vacuo. Flash chromatography (40% DCM hexanes to 100% DCM) gave the title ester. 'H-NMR (500 MHz, CDCI3) δ ppm 3.724 (s, 3H), 3.829 (s, 2H), 4.069 (s, 3H), 7.139 (d, J= 8.0 Hz, 1H), 7.465 (d, J= 8.0 Hz, 1H).
25 Step B: 3-Chloro -4-(2-hvdroxethyD -2-methoxybenzonitrile
A suspension of methyl (2-chloro-4-cyano-3-methoxyphenyl)acetate (700 mg, 2.9 mmol) in THF (15 mL) was treated with lithium borohydride solution in THF (2M, 1.46 mL, 2.9 mmol) and the reaction was stined overnight at room temperature. The reaction was quenched with 2N HCl and the mixture was partitioned with ethyl acetate and water. The aqueous layer was extracted again 30 with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a silica gel column (gradient 10-40% ethyl acetate in hexanes) to afford the title alcohol as a white solid. LC-MS (IE, m/z): 212 [M + 1]+.
½-NMR (500 MHz, CDCI3) δ ppm 1.58 (br s, 1H), 3.096 (t, J= 6.5 Hz, 2H), 3.943 (t, J Hz, 2H), 4.083 (s, 3H), 7.175 (d, J= 7.8 Hz, 1H), 7.462 (d, ./= 8.0 Hz, 1H).
Step C: 3-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile
RL-ACV-00045
A solution of 3-chloro-2-methoxy-4-(2-hydroxethyl)benzonitrile (80 mg, 0.38 mmol) in DCM (6 mL) was treated with Dess-Martin periodinane (320 mg, 0.76 mmol) and was stirred at room temperature for 2.5 hours. LC-MS showed an aldehyde peak by UV (no M+l detected in the MS) and a small amount of alcohol. The reaction was quenched by partitioning with DCM and 5 water containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly in subsequent reductive amination reactions. NMR of the crude mixture indicated a mixture of aldehyde and periodinane by-product. 'H-NMR (500 MHz, CDCI3) δ ppm 3.976 (s, 2H), 4.101 (s, 3H), 7.112 (d, J= 8.0 Hz, 1H), 7.513 (d, J= 8.0 Hz, 1H), 9.798 (s,
10 1H).
5-Chloro-2-fluoro-4-f2-oxoethyl)benzonitrile
Step A: 5-Chloro-2-fluoro-4-(2-hvdroxethvnbenzonitrile
15 A suspension of methyl (2-chloro-4-cyano-5-fluorophenyl)acetate (250 mg, 1.10 mmol)
(prepared from 5-chloro-2,4-difluorobenzonitrile as in Intermediate 39) in THF (7 mL) was treated with lithium borohydride solution in THF (2M, 1.1 mL, 2.2 mmol) and the reaction was stirred overnight at room temperature. The reaction was nearly complete after 20 hours by LC- MS from the UV trace. The reaction was quenched 2N HCl and the mixture was partitioned with
20 ethyl acetate and water. The aqueous layer was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a CombiFlash Rf (12 gm, gradient 10-20% ethyl acetate in hexanes with 5% DCM for solubility) to afford the title alcohol as an oil. Ή-NMR (500 MHz, CDCI3) δ ppm 1.45 (br s, 1H), 3.01 (t, J= 6.4 Hz, 2H), 3.92 (t, J= 6.4 Hz, 2H), 7.218 (d, /== 9.3 Hz, 1H), 7.581 (d, =
25 5.7 Hz, lH).
Step B: 5-Chloro-2-fluoro-4-(2-oxoethvnbenzonitrile
A solution of 5-chloro-2-fluoro-4-(2-hydroxethyl)benzonitrile (85 mg, 0.88 mmol) in DCM (5 mL) was treated with Dess-Martin periodinane (360 mg, 0.85 mmol) and was stirred at room temperature for 2.5 hours. The reaction was quenched by partitioning with DCM and water 30 containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly in subsequent reductive amination reactions. NMR of the crude product indicated a mixture of aldehyde and still some periodinane by-product. ^^H- M (500 MHz, CDCI3) δ ppm 3.967 (s, 2H), 7.172 (d, J= 8.7 Hz, 1H), 7.693 (d, J= 5.7 Hz, 1H), 9.802 (s, 1H).
(5-CMoro-2-methoxy-4-(2-oxoefoyl)beiizonitrile
Step A: f2-ChJoro-4-cyano-5-methoxyphenyl)acetic acid
To a solution of methyl (2-chloro-4-cyano-5-fluorophenyl)acetate (0.55 g, 2.4 mmol), which was 5 prepared as in the synthesis of Intermediate 40, in MeOH (15 mL) in a 20 mL MW vial was added potassium carbonate (1.00 g, 7.2 mmol). The reaction was heated at 130 °C for 45 minutes. The reaction was then concentrated, the residue was diluted with water, acidified with 2M HCl and extracted 2x with ethyl acetate, and the organic layers were washed with brine, dried over sodium sulfate and evaporated in vacuo. Flash chromatography (10-50% ethyl
10 acetate hexanes with 1% HO Ac) gave the title acid as a white solid. ½ -NMR (500 MHz, CDC13) δ ppm 3.77 (s, 2H), 3.90 (s, 3H), 6.90 (s, 1H), 7.53 (s, IK).
Step B: Methyl (2-chloro-4-cyano-5-methoxyphenyl)acetate
(2-Chloro-4-cyano-5-methoxyphenyl)acetic_acid (545 mg, 2.4 mmol) was taken up in 1:1 MeOH:DCM (50 mL) and excess 2M trimemylsilyldiazomethane in ether was added until the 15 yellow color persisted, the excess was quenched with acetic acid and the solution was
concentrated in vacuo. Flash chromatography (10-50% ethyl acetate/hexanes) gave the title ester as a white solid. ½-NMR (500 MHz, CDCI3) δ ppm 3.703 (s, 3H), 3.767 (s, 2H), 3.897 (s, 3H), 6.896 (s, 1H), 7.526 (s, 1H).
Step C: 5-Chloro-4-(2-hvdroxethyl)-2-methoxybenzonitrile
20 A suspension of methyl (2-chloro-4-cyano-5-methoxyphenyl)acetate (200 mg, 2.9 mmol) in THF (15 mL) was treated with lithium borohydride solution in THF (2M, 1.46 mL, 2.9 mmol) and the reaction was stirred overnight at room temperature. The reaction was quenched with 2N HCl and the mixture was partitioned with ethyl acetate and water. The aqueous layer was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and
25 evaporated. The residue was purified on a silica gel column (gradient 10-40% ethyl acetate in hexanes) to afford the title alcohol as a white solid. 1H-NMR (500 MHz, CDCI3) δ ppm 1.558 (br s, 1H), 3.035 (t, J= 6.5 Hz, 2H), 3.927 ( = 6.4 Hz, 2H), 3.927 (s, 3H), 6.927 (s, 1H), 7.536 (s, 1H).
Step D: 5-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile
30 A solution of 5-chloro-2-methoxy-4-(2-hydroxethyl)benzonitrile (60 mg, 0.33 mmol) in DCM (6 mL) was treated with Dess-Martin periodinane (281 mg, 0.66 mmol) and was stirred at room temperature for 2.5 hours. The reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate (3x). The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which
35 was used directly in subsequent reductive amination reactions. NMR of the crude mixture
MRL-ACV-00045 indicated a mixture of aldehyde and periodinane by-product. H-NMR (500 MHz, CDCI3) δ ppm 3.951 (s, 2H), 3.958 (s, 3H), 6.880 (s, 1H), 7.625 (s, 1H), 9.810 (s, 1H).
5 2-Fluoro-3-methyI-4-(2-oxoethyDbeiizonitrile
Step A: t-Butyl methyl (4-cyano-3-fluoro-2-methylphenyl)malonate
t-Butyl methyl malonate (0.71 g, 4.1 mmol) in anhydrous DMF (20 mL) under nitrogen was cooled in an ice bath. Sodium hydride (60% in mineral oil, 176 mg, 7.4 mmol) was added portionwise over 5 minutes. The reaction was allowed to warm to room temperature for 30
10 minutes at which time all was in solution and hydrogen gas had ceased. To the solution was then added 2,4-difluoro-3-methylbenonitrile (0.500 g, 3.3 mmol) as a solid in one portion. The reaction was heated in a 95 °C oil bath for 5 hours and then stirred at room temperature for 16 hours. The reaction was quenched by addition of 2N HCl in water. The mixture was portioned with ether (2x), and the organic layers were washed with brine, dried over sodium sulfate and
15 evaporated in vacuo. TLC (10% ethyl acetate hexanes) indicated a small amount of di-fluoro starting material, major desired product plus some minor isomer (slightly higher Rf) and excess malonate. The crude residue was purified by FC (5-7% to elute excess malonate, starting material and minor isomer, then 10-15% ethyl acetate/hexanes to elute the product) to afford several clean product fractions. ½-NMR (500 MHz, CDCI3) δ ppm 1.371 (s, 9H), 2.200 (s,
20 3H), 3.692 (s, 3H), 4.725 (s, 1H), 7.237 (d, J= 8.2 Hz, 1H), 7.389 (br t, J= 13 Hz, 1H).
Step B: Methyl f4-cvano-3-fluoro-2-memylphenyr)acetate
To a solution of fert-Butyl methyl (4-cyano-3-fiuoro-2-methylphenyl)malonate (0.75 g, 2.4 mmol) in DCM (10 mL) was added TFA (10 mL) at room temperature and the mixture was aged for 3 hours. LC-MS and TLC (15% ethyl acetate/hexanes) indicated the lack of starting diester,
25 but still some mono-acid/mono-ester intermediate. The volatiles were removed in vacuo and the residue was taken up in dioxane with a few drops of acetic acid and heated to reflux for 1 hour. The volatiles were again removed in vacuo and the residue was purified by flash chromatography (5-15% ethyl acetate hexanes) to give several main fractions of clean title ester product. ½- NMR (500 MHz, CDCI3) δ ppm 2.254 (s, 3H), 3.709 (s, 5H), 7.102 (d, J= 8.0 Hz, 1H), 7.414
30 (br t, /= 7.3 Hz, 1H).
Step C: 2-Ρ1ηοΓο- ^6Φν1-4- 2^νάτο 6Ϊίιν1^6ηζοηίίΓίΐ6
A suspension of methyl (4-cyano-3-fluoro-2-methylphenyl)acetate (170 mg, 0.82 mmol) in THF (3 mL) was treated with lithium borohydride solution in THF (2M, 0.82 mL, 1.6 mmol) and the reaction was stirred overnight at room temperature. The reaction was quenched with 2N HCl and 35 the mixture was partitioned with ethyl acetate and water. The aqueous was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and
MRL-ACV-00045 evaporated. The residue was purified on a silica gel column (gradient 10-40% ethyl acetate in hexanes) to afford the title alcohol as an oil. 1H-NMR (500 MHz, CDCI3) δ ppm 1.88 (br s, 1H), 2.303 (s, 3H), 2.971 (t, J= 6.6 Hz, 2H), 3.886 (t, J= 6.6 Hz, 2H), 7.129 (d, J= 8.0 Hz, 1H), 7.403 (br t, = 7.5 Hz, 1H).
5 Step D: 2-Fluoro-3-methyl-4-f2-oxoethyl)benzonitrile
A solution of 2-fluoro-3-methyl-4-(2-hydroxethyl)benzonitrile (66 mg, 0.37 mmol) in DCM (5 niL) was treated with Dess-Martin periodinane (312 mg, 0.74 mmol) and was stirred at room temperature for 2.5 hours. The reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate. The organic layer was then washed with 10 brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly in subsequent reductive amination reactions. NMR of the crude product indicated a mixture of aldehyde and still some periodinane by-product. ½-NMR (500 MHz, CDCI3) δ ppm 2.210 (s, 3H), 3.846 (s, 2H), 7.054 (d, J= 8.0 Hz, 1H), 7.449 (br t, J = 8.0 Hz, 1H), 9.757 (s, 1H).
(2-Methoxy-3-methyl-4-(2-oxoethyl')benzonitrile
Step A: Methyl f4-cvano-3-methoxy-2-methylphenvDacetate
A solution of methyl (4-cyano-3-fluoro-2-methylphenyl)acetate (0.38 g, 1.8 mmol) from the 20 Example 42, Step B, was taken up in methanol (6 mL), potassium carbonate (0.51 g, 3.7 mmol) was added and the reaction was heated at 135 C for 2.5 hours (not complete after 1 hour). The reaction was concentrated, the residue was diluted with water and extracted 2x with ethyl acetate, and the organic layers were washed with brine, dried over sodium sulfate and evaporated in vacuo. Flash chromatography (5-10% ethyl acetate/hexanes) still gave a mixture so repeated 25 chromatography (25-100% DCM in hexanes) gave clean title ester (220 mg). 1H-NMR (500 MHz, CDCI3) θ ppm 2.22 (s, 3H), 3.68 (s, 2H), 3.70 (s, 3H), 3.97 (s, 3H), 7.04 (d, /= 8.0 Hz, lH), 7.39 (d, = 8.0 Hz, 1H).
Step B: 4-(2-ΗνάΓ0Χ6ΦνΡ -2-methoxy-3-methylbenzonitrile
A suspension of methyl (4-cyano-3-methoxy-2-methylphenyl)acetate (175 mg, 0.80 mmol) in 30 THF (5 mL) was treated with lithium borohydride solution in THF (2M, 0.79 mL, 1.6 mmol) and the reaction was stirred overnight at room temperature. The reaction was quenched with 2N HC1 and the mixture was partitioned with ethyl acetate and water. The aqueous layer was extracted again with ethyl acetate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was purified on a silica gel column (gradient 10- 15% ethyl acetate 35 in hexanes to elute some remaining starting material, then 15-25% to elute the product) to afford the title alcohol. *H-NMR (500 MHz, CDC13) δ ppm 1.57 (br s, 1 H), 2.266 (s, 3H), 2.931 (t, J =
MRL-ACV-00045
6.8 Hz, 2H), 3.860 (t, J= 6.8 Hz, 2H), 3.961 (s, 3H), 7.030 (d, = 8.1 Hz, 1H), 7.374 (d, /= 8.1 Hz, 1H).
Step C: 2-Methoxy-3-methyl-4-C2-oxoethyl benzonitrile
A solution of 2-rnethoxy-3-methyl-4-(2-hydroxethyl)benzonitrile (60 mg, 0.31 mmol) in DCM (5 5 mL) was treated with Dess-Martin periodinane (266 mg, 0.63 mmol) and was stirred at room temperature for 2 hours. MS/LC showed an aldehyde peak by UV (no M+l detected in the MS) and no alcohol. The reaction was quenched by partitioning with DCM and water containing sodium bicarbonate and sodium thiosulfate. The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly 10 in subsequent reductive animation reactions. LC-MS of the crude mixture (72 mg) indicated a mixture of aldehyde and a trace of periodinane by-product.
4-Fluoro-2-methoxy-5-(2-oxoethvDbenzonitrile
15 Step A: 4-Fluoro-5-iodo-2-methoxybenzonitrile
To 4-fluoro-2-methoxybenzonitrile (3.00 g, 20 mmol) and N-iodosuccinimide (NIS) (4.7 g, 21 mmol) under nitrogen was added TFA (35 mL) and the reaction was stirred at room temperature for 20 hours. The volatiles were removed in vacuo and the residue was taken up in 1 : 1 ethyl acetatexther and was washed with aqueous sodium bicarbonate and then brine containing
20 enough sodium sulfite to remove the iodine color. The aqueous layers were back extracted with more 1 : 1 ethyl acetatexther and the combined organic layers were dried over sodium sulfate and evaporated. The residue was treated with ether/hexanes to afford clean iodo title product as a white solid. *H-NMR (500 MHz, CDC13) δ ppm 3.930 (s, 3H), 6.730 (d, J= 9.4 Hz, 1H), 7.900 (d, J= 6.8 Hz, 1H).
25 Step B: 4-Fluoro-2-methoxy-5-(prop-2-en-l-yl)benzonitrile
To a mixture of 4-fluoro-5-iodo-2-methoxybenzonitrile (2.5 g, 9.0 mmol), Pd(Ph3P)4 (1.0 g, 0.90 mmol) and lithium chloride (0.96 g, 23 mmol) under nitrogen was added anhydrous toluene (50 mL) and the mixture was flushed (3 ) with nitrogen. Allyltributyltin (4.15 mL, 14 mmol) was added and the mixture was flushed again with nitrogen. The reaction was heated under nitrogen
30 at 115 C for 2.5 hours and then let cool to room temperature. TLC (10% ethyl acetate Hexanes) showed several spots with a strongly charring product spot right above the starting material. The reaction was diluted with hexanes and filtered to remove insoluble material. The mother liquor was concentrated and the residue was purified on a Biotage 65+M column with a gradient elution from 0 to 40% ethyl acetate in hexanes to afford the title product which had some residual
35 tributylstanane by-product contaminant by NM . 1H-NMR (500 MHz, CDCI3) δ ppm 3.327 (d, /= 6.5 Hz, 2H), 3.902 (s, 3H), 5.102 (2 d, J= 10.0 and 17 Hz, 2H), 5.868 (m, 1H), 6.668 (d, J= 11.1 Hz, 1H), 7.390 (d, .7= 8.0 Hz, 1H).
MRL-ACV-00045
Step C: 4-Fluoro-5-(2-hydroxyethylV2-methoxybenzonitrile
A solution of 4-fluoro-2-methoxy-5-(prop-2-en-l-yl)benzonitrile (1.2 g, 6.0 mmol) in methanol (50 mL) was cooled in a dry ice acetone bath and treated with ozone. Since the starting material was contaminated with some tributylstanane residue from the previous reaction, the reaction 5 turned brown at first. The mixture was flushed with nitrogen and quenched with dimethylsulfide (4 mL). The solution was allow to warm to about 0 °C which resulted in a clear yellow solution and then sodium borohydride (0.27 g, 7.2 mmol) was added under nitrogen and the reaction was stirred for 30 minutes at room temperature. TLC of an aliquot in ether/water (30% ethyl acetate in hexanes) indicated a product band without evidence of starting material. After a total of 1
10 hour, the reaction was quenched with 18% aqueous citric acid and concentrated in vacuo to remove the methanol. The residue was partitioned between ethyl acetate and 18% citric acid, washed with brine, dried over sodium sulfate and evaporated. Purification of the residue with a Biotage 40+M column (10 to 60 % ethyl acetate in hexanes) gave the title alcohol as a white solid. 1H-NMR (500 MHz, CDC13) δ ppm 1.60 (br s, 1H), 2.842 (t, J= 6.5 Hz, 2H), 3.853 (t, J
15 = 6.5 Hz, 2H), 3.904 (s, 3H), 6.682 (d, J= 11.2 Hz, 1H), 7.487 (d, J= 8.1 Hz, 1H).
Step D: 4-Fluoro-2-memoxy-S-(2-oxoemvDbenzonitrile
A solution of 4-fluoro-5-(2-hydroxyethyl)-2-methoxybenzonitrile (72 mg, 0.37 mmol) in DCM (5 mL) was treated with Dess-Martin periodinane (313 mg, 0.74 mmol) and was stirred at room temperature for 3 hours. The reaction was quenched by partitioning with DCM and water
20 containing sodium bicarbonate and sodium thiosulfate for 30 minutes. The organic layer was then washed with brine, dried over sodium sulfate and evaporated to give crude title aldehyde as an oil which was used directly in subsequent reductive amination reactions. NMR of the crude mixture indicated an apparent mixture of aldehyde and acid (2:1 ratio) and some periodinane byproduct. ½-NMR (500 MHz, CDCI3) δ ppm 3.726 and 3.741 (2 s, 2H, 2:1 ratio), 3.933 (s, 3H),
25 6.745 (d, 7= 11.0 Hz, 1H), 7.419 and 7.490 (2 d, = 8.0 Hz, 1H, 2:1 ratio).
Final products in the Examples are named as their free base/free acid forms, although synthesis of some of the compounds may have resulted in a salt form of the final product. IC50 results derived from testing each compound in the 86Rb+ Efflux Assay described below are 30 provided in parentheses at the end of each Example. For example, the compound of Example 1 had an ICS0 of 0.052 uM in the 86Rb+ Efflux Assay.
1.4-Bis[2-(4-nitrophenyl")ethvnpiperazine:
MRL-ACV-00045
To a solution of l-[2-(4-nitrophenyl)ethyl]piperazine hydrochloride (30 mg, 0.11 mmol) in DMF (2 mL) was added l-(2-bromoethyl)-4-nitrobenzene (31 mg, 1.3 mmol) and TEA (46 uL, 0.33 mmol). The mixture was heated to 80 °C for 16 hours. LC showed some desired product at that point. The desired l,4-bis[2-(4-nitrophenyl)ethyl]piperazine was purified by mass-directed 5 HPLC. LC-MS (IE, m/z): 385 [M + 1]+. (0.052 uM)
1 -f2-(4-NitophenvDethylH-f2-( 5-m^opyridm-2-vDethyl]piperazine:
To a flask charged with l-[2-(6-nitropyridin-3-yl)ethyl]piperazine hydrochloride (40 mg, 0.15 mmol) and and a stir bar was added l-(2-bromoethyl)-4-nitrobenzene (40 mg, 0.18 mmol), DMF (2 mL), and triethylamine (0.082 mL, 0.59 mmol). The mixture was heated to 60 °C for 16 hows. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, m/z): 386 [M + 1]+. (0.28 uM)
6-f4-f2-(4-Nitrophenyl)ethyll piperazin-lyl>-5.6.7.8-tetrahYdronaphthalene-2-carbonitrile: A mixture of 6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile (generated from treateding ieri-Butyl 4-(6-cyano-l, 2, 3, 4-tetrahydronaphthalen-2-yl) piperazine-l-carboxylate (110 mg, 0.32 mmol) with trifluoroacetic acid (2 ml, 26 mmol) at RT), l-(2-bromoethyl)-4-
20 nitrobenzene (47 mg, 0.21 mmol), and Hunig's Base (0.054 ml, 0.31 mmol in 1 ml DMF was stirred at 60 °C for 21 hours. The reaction was shaken with 1 ml 1 N NaOH and lmL DCM. The organic layer was separated and evaporated to dryness. The residue was purified by mass directed HPLC to yield 6-{4-[2-(4-nitrophenyl)ethyl]piperazin-lyl}-5, 6, 7, 8-tetrahydronaphthalene-2- carbonitrile. LC-MS (IE, m/z): 391 [M + 1] +. (0.050 μΜ)
4-(2- (4-[2-(4-Nitrophenyl)ethyl1piperazin- 1 -yl} ethvDbenzonitrile:
Step A: l- 2-f4-bromophenylte1liyll^-[2-(4-niliophenyl)ethyllDiperazine
A solution of l-[2-(4-nitrophenyl)ethyl]piperazine (300mg, 1.3 mmol), l-bromo-4-(2- bromoethyl)benzene (400mg, 1.5 mmol), and triethylamine (0.89 mL, 6.4 mmol) in DMF (5 mL) 5 was heated to 60 °C for 16 hours. LC showed formation of the desired product. The desired product was purified by silica gel chromatography (10% MeOH in EtOAc). LC-MS (IE, m/z): 420 (M+l)+.
Step B: 4-(2-(4-[2-(4-rntxophenyl)ethyl]pipera2in-l-yl}ethyl)ben2onitrile
A solution of l-[2-(4-bromophenyl)ethyl]-4-[2-(4-nitrophenyl)ethyl]piperazine (lOOmg, 0.24 10 mmol), Zinc cyanide (84mg, 0.72 mmol), and tetrakis(triphenylphosphine)palladium in DMF (1 mL) was heated to 85 °C for 1 hour. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, m/z): 365 (M+l)+. (0.079 μΜ)
15 2-(FluoromethyD- 1.4-bisf 2-(4-nitophenyDethyl]piperazine:
A mixture of 2-(fluoromethyl)piperazine diacetate (30mg, 0.17 mmol), l-(2-bromoethyl)-4- nitrobenzene (150mg, 0.67 mmol), tetrabutylammonium iodide (6.2 mg, 0.017 mmol), and K2C03 (58 mg, 0.42 mmol) in DMF (2 mL) was heated to 60 °C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE,
20 m/z) 417 (M+l)+. (0.18 μΜ)
4.4'-(Piperazine-1.4-diyldiethane-2.1-diyl)dibenzonitrile
Step A: 1.4-Bis[2-(4-bromophenvDethvnpiperazine
25 Hunig's Base (3.0 ml, 17 mmol) was added to a stirred solution of piperazine (250 mg, 2.9 mmol) and l-bromo-4-(2-bromoethyl) benzene (0.89 ml, 5.8 mmol) at 50 °C for 16 hours. The reaction was then poured into water and extracted with ethyl acetate. The ethyl acetate layer was separated and dried over Na2S0 and evaporated to dryness. The residue was purified thru 40 gram ISCO Redi-sep column and eluted with 0-5% MeOH in DCM to give yellow solids of l,4-bis[2-(4-
30 bromopheny!)ethyl]piperazine (0.88 g, 1.95 mmol). LC-MS (IE, m/z); 453 [M + 1]+.
MiO^ACV-00045
Step B: 4^'-(Tiperazine-1.4-diyldiethane-2.1-diyl')dibenzonitriIe:
Tetrakis(triphenylphosphine)palladium (15 mg, 0.013 mmol), zinc cyanide (52 mg, 0.44 mmol), and l,4-bis[2-(4-bromophenyl)ethyl]piperazine (100 mg, 0.22 mmol) were stirred in microwave tube containing 2 ml DMF then microwaved at 80 °C for 1 hour. LC-MS showed product peak at 2.1 (M+l= 345) and also the mono cyano at 2.5 (M+l= 400). Added more Zn(CN)2 (52 mg, 0.44 mmol) and microwaved for another lhour. The reaction mixture was cooled and filtered. To the filtrate was added 1 N NaOH then extracted with ethyl acetate. The organic layer was then washed with brine then dried over MgS04 and evaporated to dryness. The residue was purified by prep TLC plate using 2.5% (NH40H : eOH 1 :9) in DCM. The major spot isolated was 4,4'- (piperazine-l,4-diyldiethane-2,l-diyl)dibenzonitrile. LC-MS (IE, m/z): 345 [M + 1]+. (0.79 μΜ)
2-Methyl- 1 ,4-bis [2-(4-nitrophenvDemyllpiperazine :
15 To a flask charged with 2-methyl-l-[2-(4-nitrophenyl)ethyl]piperazine hydrochloride (40 mg, 0.1 mmol) and a stir bar was added l-(2-bromoethyl)-4-nitrobenzene (65 mg, 0.28 mmol), tetrabutylammonium iodide (5.2 mg, 0.014 mmol), K2C03 (48 mg, 0.35 mmol), and DMF (2 mL). The mixture was heated to 80 °C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, m/z): 399 [M+l]+. (0.14
20 uM)
Methyl (2S)-3-(4-nitrophenyl')-2- ί 4-[2-(4-nitrophenyl)ethyllpiperazin- 1 -yl ) propanoate
Step A: Methyl (2SV3-(4-nitrophenyl)-2-piperazin-l-ylpropanoate hydrochloride
25 To a cooled solution of feri-butyl diallylcarbamate (145 mg, 0.74 mmol) in DCM (15 mL) at -78 °C was bubbled ozone for about 5 minutes. The solution was light blue at that point. Excess ozone was removed by flushing nitrogen through the reaction. To the reaction was added methyl (2S)-2-amino-3-(4-nitrophenyl)propanoate hydrochloride and triethylamine (74 mg, 0.74 mmol), followed by NaB(OAc)3H (940 mg, 4.4 mmol). The reaction was allowed to warm to RT, and
30 stir for an additional 4 hours. The mixture was poured into water, extracted with DCM. The
L-ACV-00045 organic layer was washed with brine, dried with MgS04, and purified by prep-TLC (50% EtOAc and Hexanes) to afford 93 mg of the desired tert-butyl 4-[(lS)-2-methoxy-l-(4-nitrobenzyl)-2- oxoethyl]piperazine-l-carboxylate. LC-MS (IE, m/z): 394 [M+l] .
The above material was further treated with 4N HC1 in dioxane to remove the Boc group. The 5 crude methyl (2S)-3-(4-nitrophenyl)-2-piperazin-l-ylpropanoate hydrochloride was used directly in the next step.
Step B: Methyl (2S~)-3-(4-nitrophenv -2-(4-[2-r4-nitrophenyl)ethyl1piperazin-l-vnpropanoate A mixture of methyl (2S)-3-(4-nitrophenyl)-2-piperazin-l-ylpropanoate hydrochloride (100 mg, 0.30 mmol), l-(2-bromoethyl)-4-nitrobenzene (77 mg, 0.33 mmol), and triethylamine (92 mg,
10 0.91 mmol) in DMF was heated to 60 °C for 16 hours. LC showed some product. More l-(2- bromoethyl)-4-nitrobenzene (77 mg, 0.33 mmol) and triethylamine (92 mg, 0.91 mmol) were added to the reaction, and the mixture was allowed to heat for another 24 hours. LC showed complete reaction at that point. The reaction was diluted with EtOAc, washed with water, and purified by HPLC to deliver the desired product. LC-MS (IE, m/z): 443 [M+l]+ (0.51 μΜ)
2.2-Dimethyl- 1.4-bis[2-(4-nitrophenyl)ethyl1pirjerazine:
A mixture of 2,2-dimethylpiperazine (35mg, 0.31 mmol), l-(2-bromoethyl)-4-nitrobenzene (280mg, 1.2 mmol), tetrabutylammonium iodide (11 mg, 0.031 mmol), and K2CO3 (169 mg, 1.2 mmol) in DMF (2 mL) was heated to 60 °C for 16 hours. LC showed formation of the desired product, which was separated by mass- directed HPLC. LC-MS (IE, m/z): 413 [M+l] . (0.21 μΜ)
25 (lS.4S)-2.5-Bisr2-(4-nitrophenvnethyl1-2.5-diazabicvclo[2.2.11heptane:
A mixture of (lS,4S)-2,5-diazabicyclo[2.2.1]heptane dihydrobromide (60 mg, 0.23 mmol), l-(2- bromoethyl)-4-nitrobenzene (210mg, 0.92 mmol), tetrabutylammonium iodide (8.5 mg, 0.023 mmol), and K2C03 (128 mg, 0.92 mmol) in DMF (2 mL) was heated to 60 °C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS
30 (IE, m/z) 397 [M+l . (0.11 μΜ)
MRL-ACV-00045
2-CvcIopropyl- 1.4-bis [2-(4-nitrophenyl)ethyl]piperazine:
A mixture of 2-cyclopropyl piperazine (50 mg, 0.40 mmol), l-(2-bromoethyl)-4-nitrobenzene 5 (360 mg, 1.6 mmol), tetrabutylammonium iodide (15 mg, 0.16 mmol), and K2CO3 (220 mg, 1.6
2-(DifiuoromethylV1.4-bis[2-(4-nitrophenyl'>ethyl]piperazine:
A mixture of 2-Difluoromethyl Piperazine (80 mg, 0.41 mmol), l-(2-bromoethyl)-4- nitrobenzene (373 mg, 1.6 mmol), tetrabutylammonium iodide (15 mg, 0.16 mmol), and K2CO3 (220 mg, 1.6 mmol) in DMF (2 mL) was heated to 80 °C for 2 days. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, m/z): 435 [M+l] . (0.44 uM)
1.4-Bis[2-(4-nitrophenyl'>ethyllpiperazin-2-vn methanol:
20 Step A: 2-(ferf-ButoxymethvI)-l ^-bisP^-nitrophenyl'tethyllpiperazine
A mixture of 2-(tert-butoxymethyl)piperazinediium diacetate (60 mg, 0.26 mmol), l-(2- bromoethyl)-4-nitrobenzene (240 mg, 1.0 mmol), tetrabutylammonium iodide (10 mg, 0.026 mmol), and K2CO3 (140 mg, 1.0 mmol) in DMF (2 mL) was heated to 80 °C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS
Step B: {1.4-Bis[2-(4-nitrophenyl)ethyllpiperazin-2-yl} methanol
MRL-ACV-00045
To a solution of 2-(re^butoxyraethyl)-l,4-bis[2-(4-nitrophenyl)ethyl]piperazine (30mg) in DCM (2 mL) was added TFA (2 mL). The reaction was allowed to stir at 25 °C for 2 hours. LC showed complete removal of the ierf-butyl group. The solvents were removed under reduced pressure, and the residue was collected without further purification. LC-MS (IE, m/z): 415 5 [M+l]+. (0.26 μΜ)
l-[2-(4-Nitrophenyl)ethyl1-4-[2-(4-nitrophenyl>propyllpiperazine
Step A: l-[2-(4-Nitrophenyl)e1hyl]-4-[2-(4-nitrophenvl)propanoyl]piperazine
10 EDC (1 13 mg, 0.591 mmol) was added to a solution of 2-(4-nitrophenyl) propionic acid (92 mg, 0.473 mmol), Hunig'sBase (0.083 ml, 0.473 mmol) and l-[2-(4-Nitrophenyl)ethyl]piperazine hydrochloride (107 mg, 0.394 mmol) in 5 ml DCM and stirred at room temperature for 3 hours. The crude mixture was diluted with ethyl acetate and washed with saturated solution of NH4CI, brine, dried over sodium sulfate, filtered and concentrated. Residue was purified by prep-TLC
15 plate with 5% ( NH4OH:MeOH 9:1) in DCM to yield l-[2-(4-nitrophenyl)ethyl]-4-[2-(4- nitrophenyl)propanoyl]piperazine (100 mg, 0.24 mmol). ½-NMR (500 MHz, DMSO) δ ppm 8.19 (d, J=9 Hz, 2H), 8.11 (d, J= 9Hz, 2H), 7.54( d, J= 9.Hz, 2H), 7.48( d, = 9.Hz, 2H), 4.33 (q, 1H), 3.39-3.48(m, 3H) , 3.26-3.42 9m, 2H), 2.82( t, /= 7.0 Hz, 2H) , 2.5 (b, 1H), 2.35-2.40( m, 2H), 2.26 (b, 1H), 2.0 (b, 1H), 1.30(d, J= 7Hz, 3H).
20 Ste B: l-[2-(4-Nitrophenyl)ethyl1-4-f2-(4-nitrophenyl)propvllpiperazine
Borane tetrahydrofuran complex 1M (0.714 ml, 0.714 mmol) was added to a stirred solution of l-[2-(4-nitrophenyl)ethyl]-4-[2-(4-nitrophenyl)propanoyl] piperazine (92 mg, 0.22 mmol) in THF then refluxed for 1 nr. LC-MS and TLC showed starting material left. More borane-THF complex 1M (0.71 ml, 0.71 mmol) was added to the reaction and refluxed for 5 hrs. The reaction
25 was cooled and added 6N HC1 and then warmed to 65°C for 0.5 hour. The reaction was poured into IN NaOH and extracted with ethyl acetate. The ethyl acetate layer was washed with water and brine then dried and concentrated. The residue was purified by mass directed HPLC. LC- MS (IE, m/z): 399 [M + 1]+. (0.34 uM)
Step A: l-Allyl-4-mtro-2-flrifluoromemvl)benzene
To a flask charged with l-allyl-4-nitro-2-(trifluoromethyl)benzene (1.Og, 3.7 mmol) and a stir bar was added tetrakis(triphenylphosphine)palladium (214 mg, 0.18 mmol), Allyl Tri-n-butyltin (1.5 5 mL, 4.4 mmol), LiCl (470 mg, 11 mmol), and toluene (30 mL). The reaction was heated to 125 °C for 16 hours under an atmosphere of nitrogen. TLC showed complete reaction at that point. The product was purified by MPLC (Hexane:EtOAc) to furnish a light yellow oil. 1H-NMR (500 MHz, CDC13) δ ppm 8.53 (m, 1H), 8.35 (m, 1H), 7.60 (d, J = 8.5Hz, 1H), 5.95 (m, 1H), 5.23 (d, = 10Hz, 1H), 5.17 (d, J= 17Hz, 1H), 3.69 (m, 2H).
10 Ste B: l-f2-(4-Nitrophenyl)ethyl]-4-{2-[4-m^
A solution of l-Allyl-4-nitro-2-(trifluoromethyl)benzene (300 mg, 1.3 mmol) in DCM (10 mL) and MeOH (30 mL) was treated with ozone at -78 °C. When the solution turned blue, triphenylphosphine (680 mg, 2.6 mmol) was added to the reaction, and it was allowed to warm up slowly. The desired aldehyde was purified by silica gel chromatography (Hexane:EtOAc).
15 To the aldehyde (17 mg, 0.074 mmol) obtained above was added l-[2-(4- nitrophenyl)ethyl]piperazine hydrochloride (20 mg, 0.074 mmol), Titanium (IV) isopropoxide (0.22 mL, 0.74 mmol), and sodium cyanoborohydride (46 mg, 0.74 mmol). The mixture was allowed to stir at RT for 10 minutes before ethanol (2 mL) was added to the reaction. LC showed formation of the desired product within 2 hours. The reaction was diluted with EtOAc,
20 washed with brine, dried over sodium sulfate, concentrated and purified by mass-directed HPLC (0.1% TFA in water and acetonitrile). LC-MS (IE, m/z): 453 [M+l . (0.44 uM)
3.8-Bis-[2-r4-nitrophenvnethyl]-3.8-diazabicvclof3.2.11octaiie:
25 A mixture of 3,8-diazabicyclo[3.2.1]octane (55mg, 0.49 mmol), l-(2-bromoethyl)-4- nitrobenzene (340 mg, 1.5 mmol), tetrabutylammonium iodide (18 mg, 0.049 mmol), and K2C03 (270 mg, 2.0 mmol) in DMF (2 mL) was heated to 80 "C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, M/Z): 411 [M+l]+. (0.19 uM)
5-(2-(4-[2-(4-Nitrophenvn ethyl1piperazin-l-yl}ethyl')-2.1.3-benzoxadiazole:
Titanium(IV) isopropoxide (1.8 ml, 6.0 mmol) was added to a mixture of l-[2-(4- nitrophenyl)ethyl]piperazine hydrochloride (0.82 g, 3.0 mmol) and 2,l,3-benzodiazole-5-yl acetaldehyde (0.49 g, 3mmol) in ethanol (5 ml) then added sodium cyanoborohydride (0.75 g, 5 12.0 mmol) and 2 drops of acetic acid. The reaction was stirred at room temperature for 16 hours.
The reaction mixture was filtered and poured intolN NaOH then extracted with ethyl acetate. The organic layer was separated , washed with brine, dried over MgS04, filtered and concentrated. The residue was first purified by prep-TLC plate using 5% (1 :9 NH^OH: MeOH) in DCM then repurified with mass-directed HPLC to yield 5-(2-{4-[2-(4-nitrophenyl)
10 ethyl]piperazin-l-yl}ethyl)-2,l,3-benzoxadiazole. LC-MS (IE, m/z): 382 [M + 1]+. ½-NM (500 MHz, DMSO) δ ppm 8.19 (d, .7=8.7 Hz, 2H), 8.03 (d, J= 9.2Hz, 1H), 7.90 (2, 1H), 7.56(d, J= 2.2 Hz, 2H), 7.54(d, J= 1.0 Hz, 1H), 3.04-3.65 (b, 16H). (0.17 uM)
15 l-[l-Methyl-2-(4-nitrophenvl)ethvl1-4-f2-(4-nitrophenyl)ethYllpiperazme:
4-Nitrophenylacetone (33 mg, 0.18 mmol) and l-[2-(4-nitrophenyl)ethyl]piperazine hydrochloride (50 mg, 0.18 mmol) were added to Titanium(TV) Isopropoxide (110 μΐ, 0.37 mmol) and stirred for 1 hour. Ethanol was added followed by sodium cyanoborohydride (23 mg, 0.37 mmol) and stirred at room temperature overnight. Poured into IN NaOH and extracted with
20 ethyl acetate then washed with brine, dried and evaporated to dryness. The residue was purified by mass directed HPLC to yield l-[2-(4-nitrophenyl)ethyl]-4-[l-(4-nitrophenyl)propan-2- yljpiperazine. LC-MS (IE, m/z): 399 [M + 1]+. ½-NMR (500 MHz, DMSO) δ ppm 8.19 (t, =8.5 Hz, 4H), 7.56 (d, 9.7Hz, 2H), 7.54(d, 9.7Hz, 2H), 2.76-4.4 (m, 15H), 1.02(d, J= 6.1Hz, 3H). (0.24 μΜ)
1.4-Bis[l-methyl-2-(4-nitrophenyl)ethyl]piperazine:
4-Nitrophenylacetone (208 mg, 1.161 mmol) was added to piperazine (50 mg, 0.58 mmol) and titanium(iv) isopropoxide (0.68 ml, 2.3 mmol) then stirred for 1 hour. Added ethanol (2 ml) and sodium cyanoborohydride (146 mg, 2.3 mmol) then stirred overnight. Poured into IN NaOH and
MRL-ACV-00045 extracted with ethyl acetate then washed with brine, dried and evaporated to dryness. The residue was purified by mass directed HPLC to yield 1,4-bis [l-(4-nitrophenyl)propan-2-yl]piperazine . LC-MS (IE, m/z): 413 [M + 1]+. ½-NMR (500 MHz, DMSO) δ ppm 8.199 (d, .7=8.5 Hz, 4H), 7.55 (d, J= 8.9Hz, 4H), 3.41 (b,6H), 3.20 (b, 2H), 3.01 (b, 4H), 2.82 (t, J= 10.72Hz, 2H), 1.043 5 (d, J =6.11,6 H). (0.33 μΜ)
2.5-Bisr2-r4-nitrorjhenyl')ethyl1-2.5-diazabicvclof2.2.21octane:
To a flask charged with terr-butyl 2,5-diazabicyclo[2.2.2]octane-2-carboxylate (200 mg, 0.94 10 mmol) and a stir bar was added TFA (5 mL). The mixture was allowed to stir at RT for 2 hours.
The volatiles were removed under reduced pressure. To the residue was added l-(2-bromoethyl)- 4-nitrobenzene (650 mg, 2.8 mmol), tetrabutylammonium iodide (35 mg, 0.094 mmol), K2CO3 (521 mg, 3.8 mmol), and DMF (5 mL). The mixture was heated to 80 °C for 16 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS 15 (IE, m/z): 411 [M+l]+. (0.21 uM)
Methyl 1.4-bis[2-(4-nitrophenyl)ethyl1piperazin-2-vUacetate:
To a suspension of methyl piperazin-2-ylacetate (0.40 g, 1.73 mmol) in DMF (2.5 mL) was 20 added l-(2-bromoe&yl)-4-nitrobenzene (1.0 g, 4.3 mmol), tetrabutyl ammonium iodide (cat.) and potassium carbonate (1.20 g, 8.7 mmol). The mixture was stirred at room temperature for 12 hours. The reaction mixture was diluted with water and extracted with ethyl acetate (3x). The combined organics were washed with water (2x) and brine, then dried (Na2S04), filtered and concentrated. The desired methyl {l,4-bis[2-(4-nitrophenyl)ethyl]piperazin-2-yl}acetate was 25 purified by mass-directed HPLC. LC-MS (IE, m/z): 456.2 [M + 1]+. (0.39 μΜ)
EXAMPLE 22
MRL-ACV-00045
2-Methoxy-4-("2-(4- [2-(4-nitrophenyl')ethYl1piperazin- 1 -yl \ ethvDbenzonitrile :
Step A: 4-Formyl-2-methoxyben2onitrile
To a stirred solution of 4-bromo-2-methoxybenzonitrile (1.0 g, 4.7 mmol) in 30 mL of anhydrous 5 THF was added BuLi (1.6 M, 3.3 mL, 5.2 mmol) dropwise at -78 °C under nitrogen atmosphere.
After the addition, the pale red solution was stirred for 5 min at -78 °C and dry DMF (0.6 mL) then added dropwise. After 20 min, the reaction mixture was poured onto a saturated solution of sodium chloride (50 mL). The organic phase was separated, extracted with diethyl ether (100 mL), dried over Na2S04 and distilled off the solvent to afford 4-formyl-2-methoxybenzonitrile. 10 MS m/z: 162 (M+l)+.
Step B: Ethyl 3-(4-cvano-3-methoxyphenyl)oxirane-2-carboxylate
A mixture of 4-formyl-2-methoxybenzonitrile (383 mg, 2.38 mmol) and chloroacetic acid ethyl ester (291 mg, 2.38 mmol) were dissolved in 10 mL of dry benzene. Freshly prepared EtONa (3.09 mmol) in 2.5 mL of ethanol was added, and the mixture were stirred at room temperature 15 for 2 hours. The mixture was added water, then extracted with EtOAc. The organic layers were dried oveT Na2S04 and concentrated to afford ethyl 3-(4-cyano-3-methoxyphenyl)oxirane-2- carboxylate. MS m/z: 248 (M+l)+.
Step C: 2-Methoxy-4-(2-oxoethvnbenzonitrile
A solution of ethyl 3-(4-cyano-3-methoxyphenyl)oxirane-2-carboxylate (400 mg, 1.6 mmol) in 5 20 mL of dry ethanol was cooled to 0 °C. Freshly prepared EtONa (2.1 mmol) in 4 mL of ethanol was added and stirred at 0 °C for 10 min. Then dropwise addition of 0.1 g of water, stirred at 0 °C for 2 hours, and the sodium salt of the epoxy compound was filtered. The sodium salt of the epoxy compound was then dissolved in 10 mL of water and added 10 mL of 1 N of HC1 and 20 mL of toluene. The mixture was heated to reflux for 2 hours. The organic phase was separated, 25 washed by saturated sodium chloride, dried over Na2S04 and distilled off solvent to afford crude 2-methoxy-4-(2-oxoethyl)benzonitrile. MS m/z: 176 (M+l)+.
Step D: 2-Memoxy-4-(2-?4-[2-f4-nitrophenyl)ethyl1piperazin-l-ylkmyl)benzonitrile
A solution of 2-methoxy-4-(2-oxoetliyl)benzonitrile (100 mg, 0.57 mmol), l-[2-(4- Nitrophenyl)ethyl]piperazine (134 mg, 0.51 mmol) in 60 mL of dry methanol were added 2 drop 30 of HOAc and then stirred at room temperature for 1 hr. Then NaBH(OAc)3 (362 mg, 1.71 mmol) was added an the then the mixture was stirred overnight. Concentrated and the residue was purified viaprep-TLC to give 2-methoxy-4-(2-{4-[2-(4-nitrophenyl)ethyl]piperazin-l- yl}ethyl)benzonitrile. ½-NMR (300 MHz, CDC13) δ ppm 8.14 (d, J=8.6 Hz, 2H), 7.35-7.47
MRL-ACV-00045
+
(m, 3H), 6.79-6.85 (m, 2H), 3.12 (s, 3H), 2.48-2.96 (m, 16H). MS m/z: 395 (M+l) . (0.052 μΜ)
5 3 -Methyl-4-f 2- (4- r2-(4-m rophenyr)ethyllpiperazin- 1 -yl } ethyltbenzonitrile
Step A: 4-Formyl-3-metfaylbenzonitrile
To a stirred solution of 4-bromo-3-methylbenzonitrile (4.0 g, 20 mmol) in 100 mL of anhydrous THF was added BuLi (1.6 , 12.8 mL) dropwise at -78 °C under nitrogen atmosphere. After the addition, the pale red solution was stirred for 5 min at -78 °C and dry DMF (2.2 mL) then added
10 drop wise. After 20 min, the reaction mixture was poured onto a saturated solution of sodium chloride (100 mL). The organic phase was separated, extracted with diethyl ether (100 mL), dried over Na2S04 and distilled off the solvent to afford 3.5 g of crude 4-formyl-3- methylbenzonitrile. MS m z: 146 (M+l)+.
Step B: Ethyl 3-(4-cvano-2-methylphenyl)oxirane-2-carboxylate
15 A mixture of 4-formyl-3-methylbenzonitrile (1.5 g, 10.3 mmol) and chloroacetic acid ethyl ester (1.2 g, 10 mmol) were dissolved in 60 mL of dry benzene. Freshly prepared EtONa (12.4 mmol) in 8 mL of ethanol was added, and the mixture were stirred at room temperature for 2 hours. The mixture was added water, then extracted with EA, dried overNa2S04 and distilled off solvent to afford 1.7 g of crude ethyl 3-(4-cyano-2-methylphenyl)oxirane-2-carboxylate. MS m/z: 232
20 (M+l)+.
Step C: 3-Methyl-4-(2-oxoethvnbenzonitrile
A solution of ethyl 3-(4-cyano-2-methylphenyl)oxirane-2-carboxylate (927 mg, 4.0 mmol) in 10 mL of dry ethanol was cooled to 0 °C. Freshly prepared EtONa (12.4 mmol) in 8 mL of ethanol was added and stirred at 0 for 10 min. Then dropwise addition of 0.1 g of water, stirred at 0 °C
25 for 2 hours, and the sodium salt of the epoxy compound was filtered. The sodium salt of the epoxy compound was then dissolved in 5 mL of water and added 5 mL of 1 N of HCI and 20 mL of toluene. The mixture was heated to reflux for 2 hours. The organic phase was separated, washed by saturated sodium chloride, dried overNa2S04 and distilled off solvent to afford 130 mg of crude 3-methyl-4-(2-oxoethyl)benzonitrile. MS m z: 160 (M+l )+.
30 Step D: 3-Methyl-4-((¾>-2- 4- 2-(4-ni1rophenvnethyl1piperazin-l-vUvinyl')benzonitrile
A mixture of 3-methyl-4-(2-oxoethyl)benzonitrile (130 mg, 0.8 mmol), l-[2-(4- nitrophenyl)ethyl]piperazine (188 mg, 0.8 mmol) and NaBH(OAc)3 in 25 mL of dry methanol were stirred at room temperature over night. The solid was filtered to get 160 mg of 3-methyl-4- ((E)-2-{4-[2-(4-mtrophenyl)e l]piperazm-l-yl}vmyl)benzonitrile. 'H-NM (300 MHz,
MRL-ACV-00045
CDCI3) δ ppm 8.15 (d, J=8.6 Hz, 2H), 7.31-7.40 (m, 5H), 6.72 (d, J=13.5Hz, 1H), 5.35 (d, J=13.9Hz, 1H), 3.20 (s, 4H), 2.95 (s, 2H), 2.57-2.75 (m, 6H), 2.26 (s, 3H). MS m z: 377 (M+l)+.
Step E: 3-MethvM-("2-(4-[2-f4-nittophenylte^
5 A solution of 3-methyM-((E)-2-{4-[2-(4-nitrophenyl)ethyl]piperazin-l-yl}vinyl)benzonitrile (100 mg, 0.24 mmol) in 15 mL of methanol and 10 mL of DCM was added NaBHi (508 mg, 2.4 mmol), then stirred at room temperature overnight. The crude product was purified via prepare TLC (methanol DCM 1:10) to give 3-methyl-4-(2-{4-[2-(4-nitrophenyl)ethyl]piperazin-l- yl}ethyl)benzonitrile. ½ -NMR (300 MHz, CDCI3) δ ppm 8.12 (d, J=8.6 Hz, 2H), 7.23-7.40
10 (m, 5H), 3.01-3.21 (m, 2H), 2.80-2.92 (m, 4H), 2.50-2.65 (m, 10H), 2.33 (s, 3H). MS m z: 379 (M+l)+. (0.062 μΜ)
2-Methyl-4-C2- f 4-f2-('4-nitrophenyl'>ethyl]piperazin- 1 -yl) ethyHbenzonitrile
15 Step A: 4-Formyl-2-methylbenzonitrile
To a stirred solution of 4-bromo-2-methylbenzonitrile (4.0 g, 20 mmol) in 100 mL of anhydrous THF was added BuLi (1.6 M, 12.8 mL) dropwise at -78 °C under nitrogen atmosphere. After the addition, the pale red solution was stirred for 5 min at -78 °C and dry DMF (2.2 mL) then added dropwise. After 20 min, the reaction mixture was poured onto a saturated solution of sodium
20 chloride (100 mL). The organic phase was separated, extracted with diethyl ether (100 mL), dried over Na2S04 and distilled off the solvent to afford 4-fonnyl-2-methylbenzonitrile. MS m z: 146 (M+l)+
Step B: Ethyl 3-(4-cyano-3-memylphenyDoxirane-2-carboxylate
A mixture of 4-formyl-2-methylbenzonitrile (1.5 g, 10.3 mmol) and chloroacetic acid ethyl ester 25 (1.2 g, 10 mmol) were dissolved in 60 mL of dry benzene. Freshly prepared EtONa (12.4 mmol) in 5 mL of ethanol was added, and the mixture was stirred at room temperature for 2 hours. The mixture was added water, then extracted with EtOAc. The organic layers were dried over Na2SC>4 and concentrated to afford ethyl 3-(4-cyano-3-methylphenyl)oxirane-2-carboxylate. MS m/z: 232 (M+l)+.
30 Step C: 2-Methyl-4-(2-oxoe vUbenzonitrile
A solution of 3-(4-cyano-3-methylphenyl)oxirane-2-carboxylate (927 mg, 4.0 mmol) in 5 mL of dry ethanol was cooled to 0 C. Freshly prepared EtONa (5 mmol) in 4 mL of ethanol was added and stirred at 0 °C for 10 min. Then dropwise addition of 0.1 g of water, stirred at 0 °C for 2 hours, and the sodium salt of the epoxy compound was filtered. The sodium salt of the epoxy
MRL-ACV-00045 compound was then dissolved in 5 mL of water and added 5 mL of 1 N of HC1 and 20 mL of toluene. The mixture was heated to reflux for 2 hours. The organic phase was separated, washed by saturated sodium chloride, dried over Na2S04 and distilled off solvent to afford crude 2- methyl-4-(2-oxoethyl)benzonitrile. MS m/z: 160 (M+l)+.
5 Step D : 2-Methyl-4-(2-{4- [2-(4-mtrophenvfiethyl1piperazm- 1 -yl ) elhvDbenzonitrile
A solution of 2-methyl-4-(2-oxoethyl)benzonitrile (130 mg, 0.8 mmol), l-[2-(4- nitrophenyl)ethyl]piperazine (190 mg, 0.8 mmol) in 25 mL of dry methanol were added 2 drop of HO Ac and then stirred at room temperature for 1 hr. Then NaBH(0 Ac)3 (380 mg, 1.8 mmol) was added an the then the mixture was stirred overnight. Concentrated and the residue was 10 purified via prep-TLC to give 2-Methyl-4-(2-{4-[2-(4-nitrophenyl)ethyl]piperazin-l- yl}ethyl)benzonitrile. ½-NMR (300 MHz, CDC13) δ ppm 8.15 (d, =8.6 Hz, 2H), 7.36-7.53 (m, 3H), 7.12 (t, .7=9.4 Hz, 2H), 2.65-2.97 (m, 16H), 2.52 (s, 3H). MS m/e: 379 (M+l)+. (0.19 M)
(6SV6-(4-[2-(4-Nitrophenvnethyl1piperazm-l-yl}-5.6J.8 etrahydronaphthalene-2-carbonitrile A mixture (eSJ-e^iperazm-l-yl-S.e sS-tetrahydronaphthalene^-carbonitrile (0.31 mg, 0.13 mmol), l-(2-bromoethyl)-4-nitrobenzene (80 mg, 0.35 mmol), and triethylamine (0.15 mL, 1.1 mmol) in DMF was heated to 60 °C for 30 hours. LC showed formation of the desired product. The reaction was diluted with EtOAc, washed with water and brine, dried over MgS04, and purified by MPLC to deliver 13 mg of (6S)-6-{4-[2-(4-nitrophenyl)ethyl]piperazin-l-yl}-5,6,7,8- tetrahydronaphthalene-2-carbonitrile. LC-MS (IE, m/z): 391 [M+l]+. (0.083 μΜ)
25 (6R>6-(4-[2-(4-Nitophenyl)emyl1pipe^
(6R)-6-{4-[2-(4-mtrophenyl)ethyl]piperazin^^
Was prepared following the same procedure of EXAMPLE 25 from (6R)-6-piperazin-l-yl- 5,6,7,8-tetrahydronaphthalene-2-carbonitrile. LC-MS (IE, m/z): 391 [M+l]+. (0.066 μΜ)
EXAMPLE 27 (2 Diastereomers')
MRL-ACV-00045
5-(2-(4-r6-aff-Tetrazol-l-yl)-1.2.3.4-teto^^
benzoxadiazole:
To a flask charged with 5-(2-piperazin-l-ylethyl)-2,l,3-benzoxadiazole hydrochloride (25 mg, 5 0.093 mmol) and a stir bar was added 6-(lH-tetrazol-l-yl)-3,4-dihydronaphthalen-2(lH)-one (30 mg, 0.14 mmol), Titanium (TV) isopropoxide (0.27 mL, 0.93 mmol), and sodium
cyanoborohydride (29 mg, 0.46 mmol). The mixture was allowed to stir for 3 hours. LC showed formation of the desired product. The reaction was diluted with EtOAc, washed with brine, dried over sodium sulfate, filtered, concentrated and purified by mass-directed HPLC (0.1% TFA in 10 water and acetonitrile). LC-MS (IE, m/z): 431 [M+l]+ (0.98 μΜ)
2.6-Difluoro-4-('2-(4-f2-(4-mtrophenyl½myl1piperazin-l-yl)emvnberrzorutrile
Step A: 4-Allyl-2.6-difluorobenzonitrile
15 A mixture of 4-bromo-2,6-difluorobenzonitrile (2.0 g, 9.2 mmol), allyl-tributyl-stannane (3.65 g, 11.0 mmol), LiCl (1.17 mg, 28 mmol) and Pd(PPh)4 (0.2 g) in 70 mL of anhydrous toluene was refluxed under 2 overnight. Checked the reaction with TLC and concentrated under reduced pressure. The residue was purified by silica gel cloumn chromatography to give the product 4- allyl-2,6-difluorobenzonitrile. MS m/z: 180 (M+1)+.
20 Step B: 4-(2.3-Dihvdroxypropyl)-2.6-difluorobenzonitrile
To a solution of 4-allyl-2,6-difluorobenzonitrile (1.7 g, 9.2 mmol) in 30 mL of methanol and 10 mL of water was added Os04 (210 mg) and NMO (3.11 g, 23 mmol), and the mixture was stirred at ambient temperature overnight. Remove the methanol under reduced pressure, the residue was dissolved in EtOAc, washed with brine, dried over anhydrous sodium sulfate and concentrated.
25 The residue was purified by fast column chromatograph to give 4-(2,3-dihydroxypropyl)-2,6- difluorobenzonitrile. MS m/z: 214 (M+l)+.
Step C: 2.6-Difluoro-4-(2-oxoemyl)benzonitrile
A solution of 4-(2,3-dihydroxypropyl)-2,6-difluorobenzonitrile (500 mg, 2.4 mmol) in 10 mL of methanol and 3 mL of water was cooled to 0 °C by ice bath, then NaI04 (754 mg, 3.5 mmol) was
MRL-ACV-00045 added and the mixture was stirred at 0 °C for two hours. The reaction was monitored according to TLC. The mixture was filtered and concentrated. The residue was dissolved in DCM, dried over anhydrous sodium sulfate, and then purified by flash column chromatography to give 2,6- difluoro-4-(2-oxoethyl)benzonitrile. MS m/z: 182 (M+1)+.
5 Step D : 2,6-Difluoro-4-f 2- {4- [2-(4-nitrophenvl)ethyllpiperazin-l -yl } ethvDbenzonitrile
A solution of 2,6-difluoro-4-(2-oxoethyl)benzonitrile (185 mg, 1.0 mmol), l-[2-(4- nitrophenyl)ethyl]piperazine (200 mg, 0.85 mmol) and NaBH(OAc)3 (720 mg, 3.4 mmol) in anhydrous DCM (10 mL) was stirred at ambient temperature overnight. The reaction was completed according to TLC. The reaction mixture was added 20 mL of DCM, washed with
10 brine, separated the organic layer, dried over anhydrous sodium sulfate and concentrated. The residue was purified by preparative TLC to give the product. H-NMR (400 MHz, CDC13) δ ppm 8.15-8.17 (d, =8.6 Hz, 2H), 7.37-7.39 (d, =8.6 Hz, 2H), 6.92-6.94 (d, .7=8.6 Hz, 2H), 2.50-3.11 (m,16H). MS m/z: 401 (M+l)+. (0.16 uM)
2-{4-f2-(4-Nitrophenyl¼myllpiperazin-l-yl -23-dihy(ko-l /-indene-5-carbonitri
To a 12 mL reaction vial was added l-(2-bromoethyl)-4-nitrobenzene (42 mg, 0.18 mmol), 4-(5- cyano-2,3-dihydro-lH-inden-2-yl)piperazin-l-ium chloride (33 mg, 0.12 mmol) and acetonitrile
(2 mL). To a stirred solution of above mixture was added iV-ethyl-iV-(propan-2-yl)propan-2- amine (32 mg, 0.24 mmol). The reaction was stirred at 60 °C for 5 hr, then concentrated and purified by preparative TLC to give the desired product. LC-MS (IE, m/z): 377 [M + 1] . (0.73 μΜ)
l-(5-Nitro-2.3-dihvdro-liy-inden-2-yl)-4-[2-(4-nitrophenynethyl1piperazine:
A mixture of l-[2-(4-Nitrophenyl)ethyl]piperazine hydrochloride (50 mg, 0.18 mmol), 5-nitro- l,3-dihydro-2H-inden-2-one (39 mg, 0.22 mmol), sodium cyanoborohydride (58 mg, 0.92 mmol, and Titanium (IV) Isopropoxide (0.54 mL, 1.8 mmol) was allowed to stir at RT for 3 hours. LC showed formation of the desired product. The reaction was diluted with EtOAc, washed with
MRL-ACV-00045 brine, dried over sodium sulfate, filtered, concentrated and purified by mass-directed HPLC (0.1% TFA in water and acetonitrile). LC-MS (IE, m/z): 397 (M+l)+. (0.31 μΜ)
5 3 -Methoxy-4-(2- (4- [2-(4-nitrophenyl)ethynpiperazin- 1 -yl ) ethvDbenzonitrile
Step A: 4-Allyl-3-methoxybenzonitrile
A mixture of 4-bromo-3-methoxybenzonitrile (1.4 g, 6.7 mmol), allyl-tributyl-stannane (2.7 g, 8.1 mmol), LiCl (0.86 mg, 20 mmol) and Pd(PPh)4 (0.2 g) in 25 mL of anhydrous toluene was refluxed under N2 overnight. Checked the reaction with TLC and concentrated under reduced 10 pressure. The residue was purified by silica gel cloumn chromatography to give the product 4- allyl-3-methoxybenzonitrile. MS m/z: 174 (M+l)+.
Step B: 4-(2.3-DihvdroxypropyD-3-methoxybenzonitrile
To a solution of 4-allyl-3-methoxybenzonitrile (1.1 g, 6.4 mmol) in 30 mL of methanol and 10 mL of water was added Os04 (140 mg) and NMO (2.2 g, 16 mmol), and the mixture was stirred
15 at ambient temperature overnight. Remove the methanol under reduced pressure, the residue was dissolved in EtOAc, washed with brine, dried over anhydrous sodium sulfate and concentrated. The residue was purified by fast column chromatograph to give 4-(2,3-dihydroxypropyl)-3- methoxybenzonitrile. MS m/z: 208 (M+l)+.
Step C: 3-Methoxy-4-(2-oxoethvDbenzonitrile
20 A solution of 4-(2,3-dihydroxypropyl)-3-methoxybenzonitrile (500 mg, 2.6 mmol) in 10 mL of methanol and 3 mL of water was cooled to 0 °C by ice bath, then NaI04 (830 mg, 3.9 mmol) was added and the mixture was stirred at 0 °C for two hours. The reaction was monitored according to TLC. The mixture was filtered and concentrated. The residue was dissolved in DCM, dried over anhydrous sodium sulfate, and then purified by flash column chromatography to give 3-
25 methoxy-4-(2-oxoethyl)benzonitrile. MS m z 176 (M+l)+.
Step D: 3-Methoxy-4-f2-{4-f2-(4-mtrophenv ethyllpiperazm-l-yl}ethyl)benzonitrile
A solution of 3-methoxy-4-(2-oxoethyl)benzonitrile (91 mg, 0.56 mmol), l-[2-(4- nitrophenyl)ethyl]piperazine (110 mg, 0.56 mmol) and NaBH(OAc)3 (393 mg, 1.87 mmol) in anhydrous DCM (15 mL) was stirred at ambient temperature overnight. The reaction was
30 completed according to TLC. The reaction mixture was added 15 mL of DCM, washed with brine, separated the organic layer, dried over anhydrous sodium sulfate and concentrated. The residue was purified by preparative TLC to give the product. *H-NMR (400 MHz, CDCI3) δ 8.15 (d, J=8.5Hz, 3H), 7.37 (d, ^=8.5Hz, 3H), 7.05 (s, 1H), 3.85 (s, 3H), 2.85-2.96 (m, 5H), 2.49-2.75 (m, 11H). MS m/z: 395 (M+l)+. (0.30 μΜ)
MRL-ACV-00045
2-Fluoro-4-(2-(4-[2- 4-nitrophenvnethyl1piperazm-l-yl emvDbenzoiiitri]e:
Step A: 4-Allyl-2-fluorobenzonitrile
5 A mixture of 4-bromo-2-fluorobenzonitrile (250 mg, 1.3 mmol), allyl-tributyl-stannane (500 mg, 1.5 mmol), LiCl (160 mg, 3.8 mmol) and Pd(PPh)4 (15 mg) in 5 mL of anhydrous toluene was refluxed under N2 overnight. Checked the reaction with TLC and concentrated under reduced pressure. The residue was purified by silica gel column chromatography to give the product 4- allyl-2-fiuorobenzonitrile. MS m/z: 162 (M+l)+.
10 Step B: 4- 2.3-Dihvdroxypropy -2-fluorobenzonitrile
To a solution of 4-allyl-2-fluorobenzonitrile (1.3 g, 8.1 mmol) in 30 mL of methanol and 10 mL of water was added Os04 (200 mg) and NMO (2.7 g, 20 mmol), and the mixture was stirred at ambient temperature overnight. Remove the methanol under reduced pressure, the residue was dissolved in EtOAc, washed with brine, dried over anhydrous sodium sulfate and concentrated.
15 The residue was purified by fast column chromatograph to give 4-(2,3-dihydroxypropyl)-2- fluorobenzonitrile. MS m/z: 196 (M+l)+.
Step C: 2-Fluoro-4-(2-oxoethyDbenzonitrile
A solution of 4-(2,3-dihydroxypropyI)-2-fluorobenzonitrile (500 mg, 2.6 mmol) in 10 mL of methanol and 3 mL of water was cooled to 00 C by ice bath, then NaIC>4 (820 mg, 3.8 mmol) was 20 added and the mixture was stirred at 00 C for two hours. The reaction was monitored according to TLC. The mixture was filtered and concentrated. The residue was dissolved in DCM, dried over anhydrous sodium sulfate, and then purified by flash column chromatography to give 2- fluoro-4-(2-oxoethyl)benzonitrile. MS m/z: 164 (M+l)+.
Step D: 2-Fluoro-4-(2- 4-f2-f4-mtrophenvnethyl1piperazin-l-yl}ethvDben2»nitrile:
25 A solution of 2-fluoro-4-(2-oxoethyl)benzonitrile (140 mg, 0.88 mmol), l-[2-(4- nitrophenyl)ethyl]piperazine (170 mg, 0.73 mmol) and NaBH(OAc)3 (620 mg, 2.9 mmol) in anhydrous DCM (10 mL) was stirred at ambient temperature overnight. The reaction was completed according to TLC. The reaction mixture was added 20 mL of DCM, washed with brine, separated the organic layer, dried over anhydrous sodium sulfate and concentrated. The 30 residue was purified by preparative TLC to give the product. Ή-NMR (400 MHz, CDCI3) δ ppm 8.13-8.16 (d, J=8.6 Hz, 2H), 7.52-7.55 (t, ,7=6.6 Hz, 1H), 7.36-7.38 (d, ,7=8.6 Hz, 2H), 7.08-7.12 (m, 2H), 2.89-3.00 (m, 4H), 2.56-2.78 (m,12H). MS m z: 383 (M+l)+. (0.24 μΜ)
5 2 4-(5.6J.8-Tetrahydrormphtto^
benzofuran- 1 OH Vone :
To a solution of 6-ΡίρβΓ8ΖΪη-1-3τ1-5,6,7,8-ΐΒΐτ3ΐιγ<ΐΓοη3ρ1ι1¾ο[2,3-ο][1,2,5]οχ3άΪ3ζο1θ
5 hydrochloride (20 mg, 0.068 mmol), 5-(2-bromoethyl)-2-benzofuran-l (3H)-one (33mg, 0.14 mmol), and tetrabutylammonium iodide (2.5 mg, 6.8 umol) in DMF (2 mL) was added triethylamine (0.028 mL, 0.20 mmol). The mixture was heated to 55 °C for 6 hours. LC showed formation of the desired product, which was separated by mass-directed HPLC. LC-MS (IE, m/z): 419 [M + 1]+ (0.21 μΜ)
1 -(T4-("2-(l -Oxo- 1 -dihvdroisobenzofuran-5-vnethv piperazin- 1 -yl)methv -2,3-dihvdro- 1 H- indene-4-carbonitrile:
To a flask containing l-(piperazin-l-ylmethyl)-2, 3-dihydro-lH-indene-4-carbonitrile (0.04 g, 15 0.17 mmol) was added 5-(2-bromoethyl)-2-benzofuran-l-(3H)-one (0.02 g, 0.06 mmol),
tetrabutyl ammonium iodide (0.02 g, 0.06 mmol) and morpholine (0.08 mL, 0.99 mmol); the resulting mixture was dissolved in DMF (3 mL) and stirred at 60 °C. Analysis of the reaction mixture indicated that reaction had gone to completion. The solution was concentrated in vacuo and shot into Mass-directed HPLC for separation to give the desired l-({4-[2-(3-oxo-l,3- 20 dihydro-2-benzofuran-5-yl)ethyl]piperazin-l-yl}memyl)indane-4-carbonitrile. LC-MS (IE, m/z):
402 [M + 1]+. (0.27 μΜ)
2-Methoxy-4-(2~f 4- \2-( 1 -oxo- 1.3 -dihvdro-2-benzofuran-5 -vDethyllpiperazin- 1 -
25 yU ethvnbenzonitrile:
MRL-ACV-00045
To a mixture of 5-[2-(piperazin-l-yl)emyl]-2-benzofuran-l(3ir)-one methyl (29 mg, 0.10 mmol) and 2-methoxy-4-(2-oxoethyl)benzonitrile (15 mg, 0.085 mmol) in methanol (1.0 mL) at 0 °C was added sodium cyanoborohydride (7.5 mg, 0.12 mmol) and the mixture was stirred at room temperature for 12 hours. The reaction mixture was concentrated and purified by mass-directed HPLC to provide 2-memoxy^-(2-{4-[2-(l-oxcKl>3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l- yl}ethyl)benzonitrile. LC-MS (IE, m/z): 405.2 [M + if. *H- MR (500 MHz, CD3OD) δ ppm 7.86 (m,lH), 7.58 (overlapping m's, 3H), 7.13 (s, 1H), 7.02 (m, 1H), 5.38 (s, 2H), 3.98 (s, 3H), 3.37-3.21 (overlapping m's, 12H) 3.18 (m, 2H), 3.08 (m, 2H). (0.089 μΜ)
4-({4-r2-q-Oxo-13-dihvdro-2-beri2pfaan-5-^
chromene-7-carbonitrile:
To a 12 mL reaction vial was added 4-formyl-3,4-dihydro-2//-chromene-7-carbonitrile (50 mg, 0.27 mmol), 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3/i)-one (66 mg, 0.27 mmol) and
15 dichloroniethane (3 mL). The solution was stirred at RT under N2 for 10 min. To above solution was added sodium tris(acetoxy) borohydride (224 mg, 1.1 mmol). The reaction was stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The organic phase was dried over MgS04, filtered and purified by flash column chromatography. LC-MS (IE, m/z): 418.1 [M + 1]+. ½ NMR (500 MHz, CDCI3, δ in ppm): 7.84 (1H, d, J= 7.8 Hz), 7.38
20 (1H, d, J= 7.8 Hz), 7.32 (2H, m), 7.11 (1H, dxd, J= 8.0 Hz, ./= 1.6 Hz), 7.08 (1H, d, J= 1.6 Hz), 5.60 (2H, s), 4.4 (2H, m), 3.0 (4H, m), 2.4- 2.8 (10H, m), 2.0 (2H, m). (0.092 μΜ)
5-f 4-r2-fl-Oxo-13-dmv(Iro-2-benzofuran-5-yl)emyllpiperazin-l-v methyl)-5,6.7.8- tetrahvdronaphalene-2-carbonitrile:
To a 12 mL reaction vial was added 5-formyl-5,6,7,8-tetrahydronaphthalene-2-carbonitrile (50 mg, 0.27 mmol), 5-[2-(piperazin-l-yl)emyl]-2-benzofuran-l(3H)-one (66 mg, 0.27 mmol) and dichloromethane (3 mL). The solution was stirred at RT under N2 for 10 min. To above solution was added sodium tris(acetoxy) borohydride (172 mg, 0.81 mmol). The reaction was
MRL-ACV-00045 stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The organic phase was dried over MgS04) filtered and purified by flash column chromatography. LC-MS (IE, m/z): 416.2 [M + if. (0.46 μΜ)
2-Fluoro-4-f2-f4-f2-(l-oxo-3 -isoberizofuran-5-yl^
To the 2-fluoro-4-(2-oxoethyl)benzonitrile (0.39 g, 2.4 mmol) were added dichloromethane (40 mL) and 5-[2-( iperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride [(0.68 g, 2.4 mmol), in dichloromethane (3 mL), and triethylamine (0.67 mL, 4.8 mmol)], and the mixture was stirred
10 at room temperature for 0.5 h. Sodium triacetoxyborohydride (2.53 g, 12 mmol) was added, and the reaction mixture was stirred at room temperature for 24 h. The reaction was quenched with water (5 mL), and the organics were extracted with EtOAc (2 χ 50 mL). The combined organic layers were washed with water (20 mL) and brine (20 mL) and dried (MgSC>4). Filtration followed by concentration afforded an oily residue, which was purified via mass-directed
15 reverse-phase HPLC followed by evaporation and drying of the pure fraction obtained off white TFA salt foam which then converted to HCl salt by triturating in 1M HCl in diethyl ether (1 mL, 1 h). Evaporation and dried under vacuum provided the final product as an off white solid. LC- MS (IE, m/z): 394.24 [M + 1]+. (0.049 uM)
2.5-Difluoro-4-[2-[4-f2-(l-oxo-3#-isoberi2»to^
2,5-Difluoro-4-[2-[4-[2-(l-oxo-3H-isobenzofuran-^
was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2,5-difluoro-4-(2- 25 oxoethyl)benzonitrile. LC-MS (IE, m/z): 412.1 [M + 1]+. (0.23 uM)
2-Bromo^-[2-f4-[2-n-oxo-3ff-isobenzofuran-5-yl)eM^^
2-Bromo-4-[2-[4-[2-(l-oxo-3H-isobenzofuran-5-yl)emyl]piperazin-l-yl]ethyl]benzonitrile was 30 prepared in a similar fashion to that described for the synthesis of Example 38 starting from 5-
MRL-ACV-00045
[2-( iperazin-l-yl)ethyl]-2-benzofviran-l(3H)-one hydrochloride and 2-bromo-4-(2- oxoethyl)benzonitrile. LC-MS (IE, m/z): 456.0 [M + if. (0.099 μΜ)
2-Me1hoxy-4-r2-f4-f2-(4-methyl-l-oxo-3ff sobenzofuran-5-yl')ethyllpiperazin-l- yllethvnbenzonitrile:
2-Me1hoxy-4-t2-[4-[2-(4-methyl-l-oxo-3H-isobenzofuran-5-yl)e hyl]piperazin-l- yl]ethyl]benzonitrile was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2-methoxy-4-(2-oxoethyl)benzonitrile. LC-MS (IE, /z) 420.2 [M + i (0.035 μΜ)
5-P-[4-r2-r6-(Tettazol-l-yiy3-pwidyl1ethv ^
15 5-[2-[4-[2-[6-(Tetrazol-l-yl)-3-pyridyl]ethyl]piperazin-l-yl]emyl]-3H-isobenzofto
prepared in a similar fashion to that described for the synthesis of Example 38 starting from 5- [2-(jpiperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and [6-(lH-tetrazol-l- yl)pyridin-3-yl]acetaldehyde. LC-MS (IE, m/z): 392.0 [(M + 1)+ - 28]. (0.91 μΜ)
4-Methyl-5-[2-[4-[2-[6-(tetra2ol-l-vlV3-pyridyl1ethvl1piperazin-l-Yl]emyl1-3ff-isoben2»fo one:
4-Meftyl-5-[2-[4-[2-[6-(tetrazol-l-yl)-3-pyrid
one was prepared in a similar fashion to that described for the synthesis of Example 38 starting 25 from 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and [6-(lH- tetrazol-l-yl)pyridin-3-yl)acetaldehyde. LC-MS (IE, m/z): 406.1 [(M + I)+ - 28]. (0.61 μΜ)
MRL-ACV-00045
2-Methoxy-4-fl-memyl-2-f4-[2-(l-oxo-3tf-isobenzofuran^
vllethyllbenzonitrile :
2-Memoxy-4-[l-memyl-2-[4-[2-(l-oxo-3H-isoberizofuran^
yl]ethyl]benzonitrile was prepared in a similar fashion to that described for the synthesis of 5 Example 38 starting from 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2-methoxy-4-(l-oxopropan-2-yl)benzonitrile. LC-MS (IE, m/z): 420.5 [M + 1]+. (0.28 μΜ)
2-Methoxy-4-ri-methyl-2-[4-[2-(4-me1hyl-l-oxo-3//-isoberizofuran-5-yl')ethyllpiperazin-l-
10 yl]ethyl]benzonitrile:
2-Mthoxy-4-[l-memyl-2-[4-[2-(4-methyl-l-oxo-3H sobenzofOTan-5-yl)elhyl]piperazin-l- yl]ethyl]benzonitrile was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 4-memyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2-methoxy-4-(l-oxopropan-2-yl)benzonitrile. LC-MS (IE, m/z): 434.5 [M +
15 1]+ (0.15 μΜ)
EXAMPLE 46 (2 diastereomers)
Me Me
2-Methoxy-4-f2-r4-r2-(4-methyl-l )xo-3g-isobenzofuran-5-yl')ethyl1piperazin-l- yl]propyl]benzonitrile:
20 2-Methoxy-4-[2-[4-[2-(4-methyl-l-oxo-3H-isobenzofuran-5-yl)ethyl]piperazin-l- yl]propyl]benzonitrile was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 4-memyl-5-[2-( iperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2-methoxy-4-(2-oxopropyl)benzonitrile. LC-MS (IE, m/z): 434.4 [M + 1] . (0.19 μΜ)
25 EXAMPLE 47
Me
4-| J-Dimethyl-2-r4-[2-(4-methyl-l-oxo-3/ -isobenzofr^
methoxy-benzonitrile :
4-[l,l-Dimemyl-2-[4-[2-(4-meAyl-l-oxo-3H-isobeiizo^
30 methoxy-benzonitrile was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 4-methyl-5-t2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one
MRL-ACV-00045 hydrochloride and 2-methoxy-4-(2-methyl-l-oxopropan-2-yl)benzonitrile. LC-MS (IE, m/z):
5 2-Methoxy-4-[2-[4 2-n-oxo-3ff-isobenzofuran-5-ylte&^
2-Methoxy-4-[2-[4-[2-(l-oxo-3H-isobenzofijran-5-yl)ethyl]piperazin-l-yl]propyl]benzonM was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one hydrochloride and 2-methoxy-4-(2- oxopropyl)benzonitrile. LC-MS (IE, m/z): 420.6 [M + 1]+. (0.21 uM)
2-( Difluoromethoxy>4-[2-f4-f 2-(4-methyl- 1 -oxo-3i/-isobenzofuran-5-vDethyl]piperazin- 1 - yllethyllbenzonitrile:
2-(Difiuoromethoxy)-4-t2-[4-[2-(4-methyl-l-oxo-3H-isobenzofuran-5-yl)ethyl]piperazin-l- 15 yl]ethyl]benzonitrile was prepared in a similar fashion to that described for the synthesis of Example 38 starting from 4-memyl-5-[2-(piperazm-l-yl)emyl]-2-benzofuran-l(3H)-one hydrochloride and 2-(difluoromethoxy)-4-(2-oxoethyl)benzonitrile. LC-MS (IE, m/z): 456.5 [M + 1]+. (0.16 uM)
5-Fluoro-3-(^4-P-(l-oxo-13-dihydro-2-ben2»furan-5-yl)ethyllpiperazin-l-vnmemylV^ dihydro-2f/-chromene-7-carbonitrile
To a 12 mL reaction vial was added 6-fluoro-4-formyl-3,4-dihydro-2/i-chromene-7-carbonitrile (12 mg, 0.058 mmol), 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one (14.4 mg, 0.058 25 mmol) and dichloromethane (3 mL). The solution was stirred at r.t under N2 for 10 min. To above solution was added sodium triacetoxy borohydride (49.6 mg, 0.23 mmol). The reaction was stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The
MRL-ACV-00045 organic phase was dried over MgSC^, filtered and purified by flash column chromatography.
LC-MS ODE, m/z): 436.3 [M + 1]+. (0.44 μΜ)
fluoromethvDpiperazin- 1 -yl } ethvDbenzonitrile:
Step A: ferf-Butyl 4 2-ri-oxo-13-dihvdro-2-benzofuran-5-vDethyl1-3- (trifluoromemvDpiperazine- 1 -carboxylate
To a solution of (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (0.495 g, 2.8 mmol) and 10 terf-butyl 3-(trifluoromethyl)piperazine-l-carboxylate (0.65 g, 2.6 mmol) in methanol (5 ml) at 0 °C was added sodium cyanoborohydride (0.21 g, 3.3 mmol) and the reaction stirred 12 hours at RT. The reaction mixture was concentrated and diluted with water. The aqueous was extracted with dichloromethane and the combined organics washed with brine, dried (MgS04), filtered and concentrated. MPLC chromatography (2→ 20% EtOAc:hexane) provided tert-bu l 4-[2-(l- 15 oxo-l,3-dihydro-2-berizoruran-5-yl)ethyl]-3-(trifluoromethyl)piperazine-l-carb^ LC-MS (IE, m/z): 415.1 [M + 1]+.
Step B : 5- { 2- [2-(Trifluoromethyl)piperazin- 1 -yllethyl\ -2-benzofuran- 1 GflVone
To a solution of feri-butyl 4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]-3- (trifluoromethyl)piperazine-l-carboxylate (183 mg, 0.44 mmol) in 1,4-dioxane (2 ml) was added 20 4 N HC1 in dioxane (1 mL) and the reaction stirred at room temperature for 12 h. LC-MS shows product formation. The reaction mixture was concentrated in vacuo and dried under high vacuum to provide 5-{2-[2-(teifluoromethyl)piperazin-l-y^
which was used directly without further purification. LC-MS (IE, m/z). 1 4.2 [M + 1] . Step C: 2-Methoxy-4-(2-(4-r2-(l-oxo-1 -o hvdro-2-benzofuran-5-yl')ethyll-3-(tri
25 fluoromethvnpiperazin-l-yllethyllbenzonitrile
To a mixture of 5-{2-[2-(trifluoromethyl)pir«razm-l-yl]emyl}-2-benzofuran-l(3i0-one (95 mg, 0.27 mmol) and 2-methoxy-4-(2-oxoethyl)benzonitrile (40 mg, 0.23 mmol) in methanol (1.0 mL) at 0 °C was added sodium cyanoborohydride (20 mg, 0.32 mmol) and the mixture was stirred at room temperature for 12 hours. The reaction mixture was concentrated and purified by mass-
30 directed HPLC to provide 2-methoxy-4-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]-3- (tri fluoromethyl)piperazin-l-yl}ethyl)benzonitrile. LC-MS (IE, /z): 474.3 [M + 1]+. ½- NMR (500 MHz, CD3OD) δ ppm 7.82 (m,lH), 7.60 (overlapping m's, 3H), 7.15 (s, 1H), 7.02
MRJL-ACV-00045
(m, IH), 5.38 (s, 2H), 3.98 (s, 3H), 3.90 (m, IH), 3.58 (m, 2H), 3.51 (m, 2H), 3.43 (m, 2H), 3.20 (m, 4H), 3.12 (m, 2H), 3.08 (m, 2H). (0.65 μΜ)
5 5-Fluoro-2-methoxy-4-(2- { 4-f2-(l -oxo- 1.3-dihvdro-2-benzofuran-5-vnethyl1piperazin- 1 - vUethvBbenzonitrile:
To a mixture of 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3fl)-one (94 mg, 0.33 mmol) and 5- fluoro-2-methoxy-4-(2-oxoethyl)benzonitrile (58 mg, 0.30 mmol) in methanol (3.0 mL) at 0 °C was added sodium cyanoborohydride (29 mg, 0.47 mmol) and the mixture was stirred at room 10 temperature for 12 hours. The reaction mixture was concentrated and purified by mass-directed HPLC to provide 5-fluoro-2-methoxy-4-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5- yl)ethyl]piperazin-l-yl}ethyl)benzonitrile. LC-MS (IE, m/z): 424.3 [M + 1]+. (0.068 μΜ)
15 S-Fluoro^-memoxy^-Q-M^-^-melfayl-l-oxo-l -dihvdro^-berizofuran-S-vDethyllpiperazin- 1 -yl} ethyDbenzonitrile:
To a mixture of 5-[2-( iperazin-l-yl)ethyl]-2-benzofuran-l(3//)-one (95 mg, 0.27 mmol) and 5- fluoro-2-methoxy-4-(2-oxoethyl)benzonitrile (40 mg, 0.23 mmol) in methanol (1.0 mL) at 0 °C was added sodium cyanoborohydride (20 mg, 0.32 mmol) and the mixture was stirred at room 20 temperature for 12 hours. The reaction mixture was concentrated and purified by mass-directed HPLC to provide 5-fluoro-2-memoxy-4-(2-{4-[2-(4-memyl-l-oxo-l,3-dihydro-2-benzofuran-5- yl)ethyl]piperazin-l-yl}ethyl)benzonitrile. LC-MS (IE, m/z): 438.4 [M + 1]+. (0.034 uM)
4.4'-rPiperazine-1.4-diyldiemane-2 -divDbisf5-fluoro-2-memoxybe
To a mixture of piperazine (13 mg, 0.15 mmol) and 5-fluoro-2-methoxy-4-(2- oxoethyl)benzonitrile (58 mg, 0.30 mmol) in methanol (3.0 mL) at 0 °C was added sodium cyanoborohydride (24 mg, 0.38 mmol) and the mixture was stirred at room temperature for 12 5 hours. The reaction mixture was concentrated and purified by mass-directed HPLC to provide 4,4'-( iperazine-l,4-diyldiemane-2,l-diyl)bis(5-fluoro-2-methoxybenzonitrile) LC-MS (IE, m/z): 441.4 [M + 1]+. (0.34 μΜ)
10 2-Memoxy-4-f2-(4-(2-(4-memyl-l-oxo-13-dihvdro-2-bera^
vnethvnbenzonitrile:
To a mixture of 4-memyl-5-[l-( iperazin-l-yl)propan-2-yl]-2-benzofuran-l(3i¾-one (25 mg, 0.080 mmol) and 2-methoxy-4-(2-oxoethyl)benzonitrile (17 mg, 0.097 mmol) in methanol (1.0 mL) at 0 °C was added sodium cyanoborohydride (7 mg, 0.113 mmol) and the mixture was 15 stirred at room temperature for 12 hours. The reaction mixture was concentrated and purified by mass-directed HPLC to provide 2-methoxy-4-(2-{4-[2-(4-methyl-l-oxo-l,3-dihydro-2- benzofuran-5-yl)propyl]piperazin-l-yl}ethyl)benzonitrile. LC-MS (IE, /z) 434.3 [M + 1] . (0.17 uM)
2-Methoxy-4-(2-(4-r2-a -oxo-1.3 -dihvdro-2-benzofuran-5-yl')ethyll-2- (trifluoromethyl)piperazin- 1 -yl ethvDbenzonitrile
Step A: terf-Butyl 4-[2-('4-cvano-3-methoxyphenyl')ethYll-3-ftrifluoromethyl')piperazine-l- carboxylate
25 To a mixture of feri-butyl 3-(trifluoromethyl)piperazine-l-carboxyiate (72 mg, 0.28 mmol) and 2-methoxy-4-(2-oxoethyl)benzonitrile (50 mg, 0.28 mmol) in methanol (2.5 mL) at 0 °C was added sodium cyanoborohydride (25 mg, 0.40 mmol) and the mixture was stirred at room temperature for 12 hours. The reaction mixture was concentrated and purified by column chromatography (4->30% ethyl acetate:hexanes) to provide iert-butyl 4-[2-(4-cyano-3-
MRL-ACV-00045 [M
Step B : 2-methoxy-4- { 2-[2-(trifluoromethyl)piperazm- 1 -yl] ethyl benzonitrile
A solution of iert-butyl 4-[2-(4-cyano-3-me&oxyphenyl)ethyl]-3-(tjrifiuoromethyl)piperazine-l- 5 carboxylate (116 mg, 0.282 mmol) in dichloromethane (2 mL) was treated with trifluoroacetic acid (1 mL) and stirred at room temperature for 2 hours. The reaction mixture was concentrated to provide 2-memoxy-4-{2-[2-(trifluoromethyl)piperazin-l-yl]ethyl}beiizomtrile. LC-MS (IE,
Step C: 2-Methoxy-4-(2-{4-r2-(l-oxo-13-dihvdro-2-bemofuran-5-Yl)ethyll-2-
10 (trifluoromethyl)piperazin-l-yl}ethyl)benzonitrile
To a mixture of 2-methoxy-4-{2-[2-(trifluoromethyl)piperazin-l-yl]ethyl}benzonitrile (116 mg, 0.28 mmol) and (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (49 mg, 0.28 mmol) in methanol (1.0 mL) at 0 °C was added sodium cyanoborohydride (18 mg, 0.28 mmol) and the mixture was stirred at room temperature for 12 hours. The reaction mixture was concentrated
15 and purified by mass-directed HPLC to provide 2-methoxy-4-(2-{4-[2-(l-oxo-l,3-dihydro-2- benzofui^-5-yl)ethyl]-2-(trifluoromethyl)piperazin-l-yl}emyl)benzonitrile. LC-MS (IE, m/z):
20 2-Memoxy-4-(2-(4-[2-(3-memyl-l-oxo-3^-dihvdro-l//-isocliromen-6-vnemyl1piperazin-l- yl } ethyPbenzonitrile
To a flask containing 3-methyl-6-[2-(piperazin-l-yl)e1hyl]-3,4-dihydro-l//-isochromen-l-one hydrochloride (123 mg, 0.40 mmol) was addedin 2mL of EtOH and NaOH (79 μΐ, 0.40 mmol). The solvent was removed and the free amine redissolved in DCM and filtered directly into a
25 flask containing 2-methoxy-4-(2-oxoethyl)benzonitrile (58 mg, 0.33 mmol). The mixture was allowed to stir for 20 minutes before sodium triacetoxyborohydride (210 mg, 0.99 mmol) was added. The reaction stirred for 1 hour before being quenched with MeOH. The crude reaction was stirred an additional 30 minutes and the excess solvent was removed. The crude material was redissolved in DCM, filtered, concentrated and purified via MPLC [10-50% (10% MeOH in
30 DCM)/DCM)] to afford 90mg (63% yield) of 2-methoxy-4-(2-{4-[2-(3-methyl-l-oxo-3,4- d&ydro-lii-isochromen-6-yl)ethyl]piperazin-l-yl}ethyl)benzonitrile. *H NMR (500 MHz; DMSO): 7.80 (d, J= 8.0 Hz, 1H), 7.58 (d, J= 8.0 Hz, 1H), 7.27 (d, J= 7.8 Hz, 1H), 7.22 (s, 1H),
MRL-ACV-00045
7.14 (s, 1H), 6.95 (d, J= 7.8 Hz, 1H), 4.65 (m, IH), 3.88 (bs, 4H), 2.94 (m, 4H), 2.78 (m, 4H), 2.43 (m, 4H), 1.38 (d, J= 6.8 Hz, 3H). LC-MS (IE, m/z): 375 [M+l]+. (0.098 μΜ)
EXAMPLE 58
fSff^-e.eWPi erazine-l^-diyldiethane^
one")
The desired product was synthesized according to the procedure described for Example 57, utilizing (3S)-6-(l,3-doxolan-2-ylmeAyl)-3-methyl-3,4-dihydro-li/-isochromen-l-one and (3S)- 10 6-(l,3-dioxolan-2-ylmemyl)-3-rnethyl-3,4-dihydro-li -isochromen-l-one as the starting
components in the reaction. LC-MS (IE, m/z): 463 [M+l]+. (0.65 μΜ)
5.5 '-fPiperazine- 1.4-di yldiethane-2.1 -di yl)bis(4-methyl-2-benzofuran- 1 OZft-one)
15 A mixture of 4-methyl-5-(2-piperazin-l-ylethyl)-2-benzofuran-l(3H)-one hydrochloride (62 mg, 0.21 mmol), (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (40 mg, 0.21 mmol), and sodium triacetoxyborohydride (67 mg, 0.32 mmol) in DCM (5 mL) was stirred overnight with a drop of acetic acid. LC showed formation of the desired product, which was purified by mass- directed HPLC (0.1% TFA in water and acetonitrile). LC-MS (IE, m/z): 435 [M+l]+. (0.076 20 uM)
2-('Methylmio)-4-(2- 4-f2-(l-oxo-13-dihvdro-2-benzofliran-5-yl')ethyl1piperazin-l- yl \ ethvDbenzonitrile:
MRL-ACV-00045
Step A: 4-Allyl-2-fluorobenzonitrile
To a solution of 4-bromo-2-fluorobenzonitrile (5.0 g, 13 mmol) in 100 ml of toluene was added LiCl (1.7 g, 39 mmol), Pd(PPh3)4 (400 mg), Allyl tributyltin (5.2 g, 16 mmol), and then the mixture was heated to reflux overnight. After the reaction was completed, the reaction solution 5 was diluted with EtOAc and filtered. The filtrate was concentrated and purified with silica gel column chromatograph to give crude 4-allyl-2-fluorobenzonitrile.
Step B: 2-Fluoro-4-(2-oxoethyl)ben2onitrile
A solution of 4-allyl-2-fluorobenzonitrile (1 g, 6.2 mmol) in 1:1 CH2Cl2/MeOH (40 mL) containing pyridine (1 mL, 12.4 mmol) was cooled to -78 °C, and O3 was passed through until a
10 blue color was present. N2 was then bubbled through to discharge the blue color and Me2S (5 ml) was added. The reaction mixture was allowed to warm and left overnight. The mixtue was washed with 1 N HC1 and aqueous NaHC03 and then dried and concentrated to give crude 2- fiuoro-4-(2-oxoethyl)benzonitrile. The material was carried on as the crude.
Step C: ferf-Butyl 4-f2-(4-cyano-3-fluorophenyl')ethyl1piperazine-l-carboxylate
15 To a solution of crude 2-fluoro-4-(2-oxoethyl)benzonitrile (900 mg, 5.5 mmol) in 20 mL of DCM was added N-Boc Piperazine (1.0 g, 5.5 mmol) and NaBH(OAc)3 (4.7 g, 22 mmol), the mixture was stirred at room temperature overnight. The reaction was diluted with DCM, and washed with brine, the organic layer was dried over anhydrous Na2S04 and concentrated. The residue was purified by preparative TLC to give tert-butyl 4-[2-(4-cyano-3-
20 fluorophenyl)ethyl]piperazine-l-carboxylate.
Step D: fe -Butyl 4-{2-[4-cyano-3-(methylthio)phenyl1ethyl}piperazine-l-carboxylate
To a solution of tert-butyl 4-[2-(4-cyano-3-fluorophenyl)ethyl]piperazine-l-carboxylate (440 mg, 1.32 mmol) in 10 mL of DMF was dropped NaSMe (0.66 mL, 1.8 mmol, 21 % in water). The mixture was stirred at 70 °C for 3 hours. The reaction was diluted with 40 mL of EtOAc and 40
25 mL water. The organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with prep-TLC to give tert-butyl 4-{2-[4-cyano-3-
(methylthio)phenyl]ethyl}piperazine-l-carboxylate (250 mg, 52 % yield). MS: m/e 362 (M+l)+. To a solution of tert-butyl4-{2-[4-cyano-3-(methylthio)phenyl]ethyl}piperazine-l-carboxylate (250 mg, 0.69 mmol) in 5 mL of DCM was added 5 mL of TFA was stirred at room temperature 30 for 1 hours, and the reaction was concentrated. The residue was diluted with 30 mL of aq.
NaHC03 and 30 mL of DCM: MeOH (v/v=10/l). The organic phase was washed with brine, dried over anhydrous sodium sulfate and concentrated to afford 2-(methylthio)-4-(2-piperazin-l- yIethyl)benzonitrile.
Step E: 2-(Me¾ylmio -(2-H-f2-(l-oxo-1.3-dihv(ko-2^^
35 yl}emyl)benzonitrile
To a solution of 2-(methylthio)-4-(2-piperazin-l-ylethyl)benzonitrile (0.69 mmol) in 20 mL of DCM was added (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (180 mg, 1.03 mmol) and NaBH(OAc)3 (580 mg, 2.8 mmol), and the mixture was stirred at room temperature overnight.
MRL-ACV-00045
The reaction was diluted with DCM, and washed with brine. The organic layer was dried over anhydrous Na2S04 and concentrated. The residue was purified by prep-TLC to give 2- (methyl1hio)-4-(2-{4-[2-(lH3xo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazm^
yl}ethyl)benzonitrile. ½-NMR (400 MHz, CDC13) δ ppm 7.82 (d, 7=8.6 Hz, IH), 7.49 (d, 5 J=7.8 Hz, IH), 7.33-7.37 (m, 2H), 7.16 (s, IH), 7.02-7.05 (m, IH), 5.27 (s, 2H), 2.49-3.01 (m, 19H). (0.55 μΜ)
5-Chloro-2-methoxy^-f2-l4-f2^1-oxo-l,3^ihydro-2-berizofuran-5-yl)ethyl1piperazin-l-
10 y 1 } ethyPbenzonitrile
To a mixture of 5-(2-piperazin-l-ylethyl)-2-benzofuran-l(3H)-one (90 mg, 0.190 mmol) and NaBH3CN (24 mg, 0.380 mmol) in 20 mL DCM was added 5-chloro-2-methoxy-4-(2- oxoethyl)benzonitrile (40 mg, 0.190 mmol) and the mixture was stirred at RT overnight.
Concentrated, and the residue was purified by prep-TLC to give 5~chloro-2-methoxy-4-(2-{4-[2-
15 (l-oxo-l,3-dihydro-2-benzomran-5-yl)emyl]piperazin-l-y!}emyl)benzonitrile. 'H-NMR (400 MHz, MeOD) δ ppm 7.82 (d, ./=7.8 Hz, IH), 7.67 (s, IH), 7.50-7.53 (m, 2H), 7.20 (s, IH), 5.35 (s, 2H), 3.95 (s, 3H), 3.23-3.26 (m, 6H), 3.10-3.16 (m, 8H), 3.00-3.03 (m, 2H). MS m/e 441 (M+l)+. (0.094 μΜ)
2-(Methylamino)-4-(2- (4-[2-(l -oxo-1.3-dihvdro-2-benzofuran-5-vl)ethyl1piperazin- 1 - yl}ethyl)benzonitrile
Step A: ferr-Butyl 4-{2-[4-cvano-3-(methylamino phenyl1ethvnpiperazine-l-carboxylate
To a solution of terf-butyl 4-[2-(4-cyano-3-fluorophenyl)ethyl]piperazine-l-carboxylate (100 mg,
0.30 mmol) in CH3CN (10 mL) was added aqueous NH2CH3 (10 mL) in a sealed tube, and then heated to 120 °C overnight. The mixture was extracted with EtOAc, washed with brine, dried over anhydrous sodium sulfate and concentrated. The residue was purified via prep-TLC to afford iert-butyl 4- {2-[4-cyano-3 -(methylamino)phenyl] ethyl } piperazine- 1 -carboxylate.
Step B: 2-(MethylaminoV4-f2-piperazin-l-ylethyl)benzonitrile
MRL-ACV-00045
A solution of iert-butyl 4-{2-[4-cyano-3-(methylamino)phenyl]ethyl}piperazine-l-carboxylate (18 mg, 0.05 mmol) in 5 mL of DCM was added TFA (3 mL), and then sirred at room temperature for 2 hours. The solvents were removed off under vacuum to afford crude 2- (methylamino)-4-(2-piperazin-l-ylethyl)benzonitrile.
Ste C: 2-(MemylaminoV4-(2-f4-[2-(l-oxo-13-q¾hvdro-2-benzofuran-5-yl¼myl]piperazi yl ) ethvDbenzonitrile
A solution of crude 2-(methylamino)-4-(2-piperazin-l-ylethyl)benzonitrile (-18 mg, 0.05 mmol), (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (9 mg, 0.05 mmol) and NaBH(0 Ac)3 (100 mg, 0.47 mmol) in 10 mL of anhydrous DCM was stirred at ambient temperature overnight. The reaction mixture was added 50 mL of DCM and washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with prep-TLC to afford 2-(methylanuno) -(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l- yl}ethyl)benzonitrile. ½-NMR (400 MHz, CDC13) δ 7.77 (d, J=7.8, 1H), 7.22-7.32 (m, 3H), 6.42-6.47 (m, 2H), 5.22 (s, 2H), 4.50-4.58 (m, 1H), 2.84-2.91 (m, 7H), 2.72-2.77 (m, 2H), 2.53-2.67 (m, 10H). (0.43 μΜ)
2-(Difluoromemoxy)-4-(2-{4-f2-(l-oxo-1 -dmvdro-2-benzofuran-5-vl)emyl]pir½razin-l- yl } ethvDbenzonitrile
20 Step A: 4-Bromo-2-hvdroxvbenzonitrile
To a stirred solution of 4-bromo-2-fluorobenzonitrile (4.0 g, 20 mmol) in DMF (20 mL) was added 2-(methylsulfonyl)ethanol (3.7 g, 30 mmol) and then NaH (2.4 g, 60 % in mineral, 60 mmol) in portions at 0 °C. The mixture was then warmed to rt. and quenched with IN HC1, and extracted by EtOAc. The organic layers were washed with brine and dried over sodium sulfate,
25 concentrated to give 4-bromo-2-hydroxybenzonitrile. 'H-NMR (400 MHz, DMSO) δ 7.55-7.57 (d, J = 8.61 Hz, lH), 7.16 (s, 1H), 7.11-7.13 (m, 1H).
Step B: 4-Bromo-2-(difiuoromemoxy)benzonitrile
A mixture of 4-bromo-2-hydroxybenzonitrile (2.0 g, 10 mmol), potassium carbonate (1.66g, 12 mmol), and ClF2CCOONa (3.0 g, 20 mmol) in DMF (18 mL) and H20 (2 mL) was degassed and 30 kept at 100 °C for 2h. The resulting mixture was cooled to RT and then added concentrated HC1 (3 mL) and H20 (4 mL) and then stirred at the temperature overnight. Then the mixture was brought to pH = 10.5 by addition of NaOH, and partitioned between water and MTBE. The organic layers were washed by water, saturated K3PO4 solution and brine, dried over sodium sulfate and concentrated to give 4-bromo-2-(difluoromethoxy)benzonitrile. 1H-NMR (400
MRJL-ACV-00045
MHz, CDC13) 67.49-7.53 (m, 2H), 7.44-7.47 (m, 1H), 6.47-6.82 (t, J= 71.2 Hz, J= 71.2 Hz, 1H).
Step C: 4-Allyl-2-(difluoromethoxy^enzonitrile
To a solution of 4-bromo-2-(difluoromethoxy)benzonitrile (620 mg, 2.5 mmol) in 30 ml of 5 toluene was added LiCl (322 mg, 7.5 mmol), Pd(PPh3)4 (60 mg), Allyl tributyltin (990 mg, 3.0 mmol), and then the mixture was heated to reflux overnight. After the reaction was completed, the reaction solution was diluted with EtOAc and filtered. The filtrate was concentrated and purified with silica gel column chromatograph to give crude 4-allyl-2-(difluoromethoxy) benzonitrile.
10 Step D: 2-(Difluoromethoxy)-4-('2-oxoethyl)benzonitrile
A solution of 4-allyl-2-(difluoromethoxy)benzonitrile (600 mg, 2.9 mmol) in 1:1 Ο¾<¾/Μβ0Η (15 mL) containing pyridine (0.5 mL, 6 mmol) was cooled to -78 °C, and 03 was passed through until a blue color was present. N2 was then bubbled through to discharge the blue color and Me2S (5 ml) was added. The reaction mixture was allowed to warm and left overnight. The
15 mixtue was washed with 1 N HC1, aqueous NaHC03, dried and concentrated to give crude 2- (difluoromethoxy)-4-(2-oxoethyI)benzonitrile.
Step E: ferf-Butyl 4-(2-[4-cyano-3-(difluoromethoxy)phenyl1ethvUpiperazine-l-carboxylate: A solution of crude compound 2-(difluoromethoxy)-4-(2-oxoethyl)benzonitrile (100 mg, 0.48 mmol), N-Boc Piperazine (100 mg, 0.54 mmol) and NaBH(OAc)3 (0.4 g, 2 mmol) in 20 mL of
20 anhydrous DCM was stirred at ambient temperature overnight. The reaction mixture was added 50 mL of DCM, washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with prep-TLC to afford tert-butyl-4-{2-[4-cyano-3- (difluoromethoxy)phenyl]ethyl} piperazine- 1-carboxylate (50 mg, 27% yield). The material was further treated with TFA to remove the Boc group. The crude product was used directly in the
25 next step. MS: m/e 282 (M+l)+.
Step F: 2-(Difluoromemoxy -(2-{4-[2-(l-oxc>-13-dihYdro-2-benzofuran-5-yl)emyl1piperazin- 1 -yl}ethyl benzonitrile
A solution of crude 2-(difluoromethoxy)-4-(2-piperazin-l-ylethyl)benzonitrile (15 mg, 0.05 mmol), (l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (18 mg, 0.1 mmol) and
30 NaBH(OAc)3 (100 mg, 0.47 mmol) in 10 mL of anhydrous DCM was stirred at ambient
temperature overnight. The reaction mixture was added 50 mL of DCM, washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with prep-TLC to afford 2-(difluoromethoxy)-4-(2-{4-[2-(l-oxo-l,3-dihydro-2- ben2»furan-5-yl)ethyl]piperazin-l-yl}ethyl)benzonitrile. ^-NMR (400 MHz, CDC13) δ 7.82 (d,
35 J = 7.8 Hz, 1H), 7.56 (d, J = 8.6 Hz, 1H), 7.33-7.36 (m, 2H), 7.13-7.20 (m, 2H), 6.33 (t, J = 71.2 Hz, 1H), 5.26 (s, 2H), 2.99-3.08 (m, 2H), 2.87-2.90 (m, 2H), 2.62-2.84 (m, 12H). (0.15 μΜ)
MRL-ACV-00045
2-(Cyclopropyloxy)-4-(2-f4-[2-(l-oxo-l,3-dihydro-2-benzor^
yl } ethyDbenzonitrile
5 Step A: 4-Bromo-2-(cyclopropyloxy')benzonitrile
A mixture of 4-bromc~2-hydroxybenzonitrile (300 mg, 1.5 mmol), bromo-cyclopropane (480 mg, 4.0 mmol) and CS2CO3 (300 mg, 1.6 mmol) in 2 mL of anhydrous DMF were heated to 170 C for 2 hours by microwave. The solid was filtered off, and the filtrate was poured to water, and extracted with EtOAc. The organic layer was washed with brine, dried over sodium sulfate and 10 concentrated. The residue was purified with prep-TLC to give 4-bromo-2-(cyclopropyloxy) benzonitrile. ½-NMR (400 MHz, CDCI3) δ ppm 7.46-7.48 (m, 1H), 7.36-7.38 (m, 1H), 7.14-7.16 (m, 1H), 3.79-3.84 (m, 1H), 0.86-0.87 (m, 4H).
Step B: 4-Allyl-2-(cyclopropyloxy)benzonitrile
To a solution of 4-bromo-2-(cyclopropyloxy)benzonitrile (108 mg, 0.45 mmol) in 20 ml of 15 toluene was added LiCl (38 mg, 0.9 mmol), Pd(PPh3)4 (15 mg), allyl tributyltin (180 g, 0.55 mmol), then the mixture was heated to reflux overnight. After the reaction was completed, the reaction solution was diluted with EtO Ac and filtered, the filtrate was concentrated and purified with silica gel column chromatograph to give crude 4-allyl-2-(cycIopropyloxy)benzonitrile. Step C: 2-(Cvclopropyloxy)-4-(2-oxoethyl)benzonitrile
20 A solution of 4-allyl-2-(cyclopropyloxy)benzonitrile (100 mg, 0.5 mmol) in 1 : 1 CE^C^/MeOH (15 mL) containing pyridine (0.5 mL, 6 mmol) was cooled to -78 °C, and O3 was passed through until a blue color was present. N2 was then bubbled through to discharge the blue color and Me2S (5 ml) was added. The reaction mixture was allowed to warm and left overnight. The mixtue was washed with 1 N HCl and aqueous NaHCC>3 and then dried and concentrated to give 25 crude 2-(cyclopropyloxy)-4-(2-oxoethyl)benzonitrile.
Ste D: 2-iCyclopropyloxy)-4-(2-{4-[2-(l-oxo-13-dihydro-2-benzofuran-5-yl)ethyl'|piperazin-l- vUethvDbenzonitrile
A solution of crude 2-(cyclopropyloxy)-4-(2-oxoethyl)benzonitrile (80 mg, 0.4 mmol), 5-(2- piperazin-l-ylethyl)-2-benzofuran-l(3H)-one (150 mg, 0.6 mmol) and NaBH(OAc)3 (400 mg, 2 30 mmol) in 10 mL of anhydrous DCM was stirred at ambient temperature overnight. The reaction mixture was added 50 mL of DCM and washed with brine. The organic layer was dried over anhydrous sodium sulfate and concentrated. The residue was purified with prep-TLC to afford 2- (cyclopropyloxy)-4-(2-{4-[2-(l -oxo-1 ,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l - yl}ethyl)benzonitrile. 'H- MR (400 MHz, CDCI3) δ ppm 7.77 (d, =7.8 Hz, 1H), 7.37 (d,
MRL-ACV-00045
J=7.8 Hz, 1H), 7.31 (d, /=7.8 Hz, 1H), 7.27 (s, 1H), 7.11 (s, 1H), 6.78-6.80 (m, 1H), 5.22 (s, 2H), 2.42-2.93 (m, 1 H), 0.77-0.80 (m, 4H). (0.28 μΜ)
5 5-(2- {4-[2-(4-Nitrophenyl')ethyl1pipeTazin- 1 -yl \ emylV2-benzofuran- 1 (3 H-one
Step A: 5-Allyl-2-benzofuran-lf3ffl-one
A 4-neck, 22-L, round bottom flask equipped with a mechanical stirrer, thermocouple, nitrogen bubbler, and condenser was charged with 5-bromophthalide (650 g, 3.0 mol), allyltri-n-butyltin (1200 g, 3.6 mol), tetrakis(triphenylphosphine)palladium (100 g, 0.089 mol), lithium chloride 10 (250 g, 5.9 mol) and toluene (8.8 L). The mixture was evacuated and flushed with nitrogen 3 times and then was stirred at 100 °C for 4 hours. After slowly cooling to ambient temperature, the mixture was filtered and concentrated. The resulting solid was purified by silica gel column chromatography (heptanexthyl acetate, 0— >40%) to provide 5-allyl-2-benzofuran-l(3i¾-one.
H NMR (500 MHz, CD3OD) δ 7.83 (d, J= 8.0 Hz, 1H), 7.38 (d, J= 8.0 Hz, lH), 7.33 (s, 1H), 15 5.98 (m, 1H), 5.29 (s, 2H), 5.11-5.18 (m, 2H), 3.52 (d, J= 8.2 Hz, 2H); LC-MS (IE, m/z): 175.1
[M + 1]+.
Step B: 5-(2 4-f2-(4-Nitrophenvnethyl]piperazin-l-yl)emylV2-benzofuran-l Gffl-one
Ozone was bubbled through a solution of 5-allyl-2-benzofuran-l(3i¾)-one (125 mg, 0.72 mmol) in DCM until the color changed to orange. Removed excess ozone by bubbling nitrogen through
20 solution for a minute. Added a solution of l-[2-(4-nitrophenyl)ethyl]piperazine hydrochloride (65 mg, 0.24 mmol) and triethylamine (0.033 mL, 0.24 mmol) in DCM (2 mL), followed by NaB(OAc)3H (250 mg, 1.2 mmol). The mixture was allowed to stir at RT for 16 hours. HPLC- MS shows product but reaction is not clean. The product was urified by prep-TLC to afford 5- (2-{4-[2-(4-nitrophenyl)ethyl]piperazin-l-yl}ethyl)-2-benzofuran-l(3H)-one as a white solid.
25 LC-MS (IE, m/z): 396 [M + 1]+. (0.089 μΜ)
6 4-f2-(l-Oxo-l -dihva^o-2-benzofuran-5-yl)ethyllpiperazin-l-yl)-5.6.7.8- tetrahvdronaphthalene-2-carbonitrile
MRL-ACV-00045
The above product was prepared following similar procedure of EXAMPLE 38 from (1-oxo- l,3-dihydro-2-benzofuran-5-yl)acetaldehyde and 6-piperazin-l-yl-5,6,7,8-tetrahydronaphthalene- 2-carbonitrile. LC-MS (IE, m/z): 402 [M + 1]+. (0.050 μΜ)
5.5'-fPiperazine- 1.4-diyldiethane-2.1 -divnbis("2-benzofuran- 1 (3 flVone
A mixture of 5-(2-bromoethyl)-2-benzofuran-l(3H)-one (130 mg, 0.54 mmol) and 5-(2- piperazin-l-ylemyl)-2-benzofuran-l(3i:i)-one hydrochloride (76 mg, 0.27 mmol) was heated to 60 °C with triethylamine (0.19 mL, 1.3 mmol) and DMF (2 mL) for 24 hours. LC showed 10 formation of the desired product. The crude reaction was diluted with EtOAc, washed with water, dried over magnesium sulfate, and purified by prep-TLC. About 26 mg pure product was collected after removal of solvent. LC-MS (IE, m/z): 407 [M + 1]+. (0.089 uM)
15 2-Trifluoromethoxy-4-(2- (4- f 2-Π -oxo- 1.3 -dihvdro-2-benzofuran-5-vDethyl1piperazin- 1 - yl \ ethvnbenzonitrile
2-Trifluoromethoxy-4-(2-oxoethyl)benzonitrile (67 mg, 0.30 mmol) was taken up in 1,2- dichloromethane (DCE) (2 mL) and S-p-i i erazin-l-y eth ll^-benzofuran-liS/ -one hydrochloride (85 mg, 0.30 mmol) and DIPEA (0.104 mL, 0.60 mmol) were added. After
20 stirring the mixture for 15 minutes at room temperature, sodium triacetoxyborohydride (102 mg, 0.48 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was isolated by reverse phase HPLC (eluted with a gradient of 10-50% acetonitrile/water (0.1% TFA) over 24 minutes).
25 The clean main fractions by LC-MS were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, /z): 460 [M + 1]+. (0.62 μΜ)
MRL-ACV-00045
2-Trifluoromethoxy-4-(2-{4-[2-(4-methyl-l-oxo-l J-dihvdro-2-benzofuran-S-y ethyllpiperazin- 1 -yl } ethyPbenzonitrile
2-Trifluoromethoxy-4-(2-oxoethyl)benzonitrile (67 mg, 0.30 mmol) was taken up in DCE (2 mL) and 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3i/)-one hydrochloride (88 mg, 0.30 mmol) and DIPEA (0.100 mL, 0.60 mmol) were added. After stirring the mixture for 15 minutes at room temperature, sodium triacetoxyborohydride (102 mg, 0.48 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was isolated by reverse phase HPLC (eluted with a gradient of 10-50% acetonitrile/water (0.1% TFA) over 24 minutes). The clean main fractions by LC-MS were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 474 [M + 1]+. (0.20 μΜ)
2-Chloro-4-f 2- {4- [2-( 1 -oxo- 1.3-dihydro-2-benzofuran-5 -yltethyllpiperazin- 1 - yl } ethvDbenzonitrile
2-Chloro-4-(2-oxoethyl)benzonitriIe (79 mg, 0.44 mmol) was taken up in DCE (2 mL) and 5-[2- 20 (piperazin- 1 -yl)ethyl]-2-benzofuran- 1 (3#)-one hydrochloride ( 124 mg, 0.44 mmol) and DIPEA (0.150 mL, 0.88 mmol) were added. After stirring the mixture for 15 minutes at room temperature, sodium triacetoxyborohydride (149 mg, 0.70 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. 25 The product was isolated by reverse phase HPLC (eluted with a gradient of 10-50%
acetonitrile/water (0.1% TFA) over 24 minutes). The clean main fractions by LC-MS were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 410/412 [M + if. (0.075 uM)
MRL-ACV-00045
2-Chloro-4-(2-{4-[2-(4-methyl-l -oxo-1 -dihydro-2-benzofuran-5-vnethvl1piperazin-l- yl } ethvDbenzonitri le
2-Chloro-4-(2-oxoethyl)benzonitrile (79 mg, 0.44 mmol) was taken up in DCE (2 mL) and 4- methyl-5-[2-^ir½iazin-l-yl)ethyl]-2-benzoiuran-l(3ii -one hydrochloride (131 mg, 0.44 mmol) and DIPEA (0.150 mL, 0.88 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium triacetoxyborohydride (149 mg, 0.70 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of
10 nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA.
The product was isolated by reverse phase HPLC (eluted with a gradient of 10-50% acetonitrile/water (0.1% TFA) over 24 minutes). The main clean fractions by LC-MS were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 424/426 [M + 1]+. (0.035 uM)
3-FluorCH2-me&oxy-4-(2-(4-[2-(l-oxo-13-dihydro-^
yl ? ethvDbeii2X)nitrile
3-Fluoro-2-methoxy-4-(2-oxoethyl)benzonitrile (15 mg, 0.15 mmol) was taken up in (DCE) (2
20 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3fl)-one hydrochloride (43 mg, 0.15 mmol) and DIPEA (0.55 mL, 0.31 mmol) were added. After stirring the mixture for 15 minutes at room temperature, sodium triacetoxyborohydride (52 mg, 0.25 mmol) was added. After 16 hours, LC- MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was isolated by reverse phase HPLC (eluted with a gradient of 10-50%
acetonitrile/water (0.1% TFA) over 24 minutes). The clean main fractions by LC-MS were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 424 [M + 1]+. (0.092 μΜ)
RL-ACV-00045
3-Fluoro-2-methoxy-4-(2-{4-[2-(4-methyl-l -oxo-1 J-dihvdro^-benzoiuran-S-vnethyllpiperazin- 1 -yl } ethyl")benzonitrile
5 3-Fluoro-2-methoxy-4-(2-oxoethyl)benzonitrile (30 mg, 0.15 mmol) was taken up in DCE (2 mL) and 4-methyl-5-[2-(pit)erazin-l-yl)ethyl]-2-benzoruran-l(3if)-one hydrochloride (45 mg, 0.15 mmol) and DIPEA (0.55 mL, 0.31 mmol) were added. After stirring the mixture for 15 minutes at room temperature, sodium triacetoxyborohydride (52 mg, 0.25 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated
10 under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 438) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 438 [M + 1]+. (0.091 μΜ)
4-(2-{4-f2-(4-Memyl-l-oxo-l,3-<Mhydro-2-benzofuran-5-vl)ethyl]piperazin-l- v ethvnnaphtlialene-l-carbonitrile
4-(2-Oxoethyl)naphthalene-l-carbonitrile (21 mg, 0.11 mmol) was taken up in methanol (2 mL) 20 and 4-methyl-5-[2-(piperazin- 1 -yl)ethyl]-2-benzofuran- 1 (3AT)-one hydrochloride (33 mg, 0.11 mmol) was added (no DIPEA). After stirring the mixture for 15 minutes at room temperature, sodium cyanoborohydride (14 mg, 0.22 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was 25 isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 440) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 440 [M + 1]+. (0.16 μΜ)
MRL-ACV-00045
2.3.5-Trifluoro-4-f 2- (4- [2-(4-methyl- 1 -oxo- 1 ,3 -dihydro-2-benzofuran-5 -yllethyllpiperazin- 1 - yl } ethyllbenzonitrile
5 4-(2-Oxoe1hyl)-2,3,5-1rifluoro-benzonitrile (22 mg, 0.11 mmol) was taken up in methanol (2 mL) and 4-methyl-5-[2-(piperazm-l-yl)e1hyl]-2-beri2ofuran-l(3ii)-one hydrochloride (32 mg, 0.11 mmol) was added (no DIPEA). After stirring the mixture for 10 minutes at room temperature, sodium cyanoborohydride (14 mg, 0.22 mmol) was added. After 16 hours, LC-MS indicated product formation and most of the volatiles were evaporated under a stream of nitrogen. The
10 residue was partitioned with DCM (2x) /aqueous sodium carbonate and the organic layers were washed with brine, dried over sodium sulfate and evaporated. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA. The product was isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 444) were evaporated to give the TFA salt which was converted to
15 the di-HCl salt of the title compound. LC-MS (IE, m/z): 444 [M + 1]+. (0.23 μΜ)
2-Ethoxy-4-(2-{4-r2-Q -oxo- 1.3-dihvdro-2-beiizofuran-5-vnethyllpiperazin- 1 - yl ) ethvDbenzonitrile
20 2-Ethoxy-4-(2-oxoethyl)benzonitrile (26 mg, 0.14 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3/i)-one hydrochloride (40 mg, 0.14 mmol) (no DIPEA) was added. After stirring the mixture for 15 minutes at room temperature, sodium cyanoborohydride (18 mg, 0.28 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was
25 diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 4 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The
MRL-ACV-00045 main fractions containing M+l = 420) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 420 [M + 1]+.
1H-NMR (500 MHz, CD3CN) δ ppm 1.335 (t, J= 7.0 Hz, 3H), 3.05 (m, 2H), 3.11 (m, 2H), 3.25 (m, 4H), 3.48 (tar s, 8H), 4.10 (q, J= 7.0 Hz, 2H), 4.0 (v br s, 2 +NH), 5.214 (s, 2H), 6.854 (d, J= 5 7.9 Hz, 1H), 6.947 (s, 1H), 7.375 (d, J= 8.1 Hz, 1H), 7.397 (s, 1H), 7.473 (d, J= 8.0 Hz, 1H),.
7.719 (d, J= 7.8 Hz, 1H). (0.053 μΜ)
2-Emoxy-4-i2-f4-[2-( -memyl-l-oxo-1.3-dihydro-2-ben^
10 yl > ethvDbenzonitrile
2-Ethoxy-4-(2-oxoethyl)benzonitrile (27 mg, 0.34 mmol) was taken up in methanol (2 mL) and 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3/f)-one hydrochloride (42 mg, 0.14 mmol) (no DIPEA) was added. After stirring the mixture for 15 minutes at room temperature, sodium cyanoborohydride (18 mg, 0.28 mmol) was added. After 16 hours, LC-MS indicated product
15 formation and most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (2 runs, eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)).
20 The clean main fractions containing M+l = 434) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 434 [M + 1]+. (0.074 μΜ)
5-C oro-2-fluoro-4-(2- 4-[2-(l-oxo-13-dihvdro-2-berizofuran-5-yl)ethyl1piperazin-l- yl}ethyl benzonitrile
5-Chloro-2-fluoro-4-(2-oxoethyl)benzonitrile (28 mg, 0.14 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3ii)-one hydrochloride (40 mg, 0.14 mmol) and DIPEA (0.025 mL, 0.14 mmol) were added. After stirring the mixture for 5 minutes at room
MRL-ACV-00045 temperature, sodium cyanoborohydride (18 mg, 0.28 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo.
5 The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50%
acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 428) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/2): 428/430 [M + 1]+. (0.076 μΜ)
5-Chloro-2-fluoro-4-(2-{4-[2-(4-methyl-l-oxo-l .3-dihvdro-2-benzofuran-5-yl)ethvnpipera2in-l- vU ethvDbenzonitrile
15 5-Chloro-2-fluoro-4-(2-oxoethyl)benzonitrile (55 mg, 0.28 mmol) was taken up in methanol (2 mL) and 4-methyl-5-[2-^iperazin-l-yl)ethyl]-2-benzofuran-l(3//)-one hydrochloride (83 mg, 0.28 mmol) and DIPEA (0.050 mL, 0.28 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (35 mg, 0.56 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a
20 stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 4 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10- 50% acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 442) were
25 evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound.
LC-MS (IE, m/z) 442/444 [M + if. *H-NMR (500 MHz, CD3CN) δ ppm 2.210 (s, 3H), 2.7 (v br s, 2 +NH), 2.93 (m, 2H), 3.05 (m, 2H), 3.09 (br s, 8H), 3.12 (br s, 2H), 3.30 br s, 2H) 5.199 (s, 2H), 7.316 (d, J= 9.1 Hz, 1H), 7.328 (d, J= 7.2 Hz, lH), 7.563 (d, /= 7.8 Hz, 1H),. 7.738 (d, J = 5.9 Hz, 1H). (0.048 μΜ)
MRL-ACV-00045
5-Chloro-2-methoxy-4-(2- (4-f2-(4-methyl- 1 -oxo- 1 -dihvdro^-benzofuran-S-ylkthyllpiperazin- l-yl)ethyl)benzonitrile
5-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile (46 mg, 0.22 mmol) was taken up in methanol (2 mL) and 4-methyl-5-[2-( iperazm-l-yl)ethyl]-2-benzofuran-l(3ii)-one hydrochloride (65 mg, 0.22 mmol) and DIPEA (0.040 mL, 0.22 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (28 mg, 0.44 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a
10 stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10- 50% acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 454/456) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 454/456 [M + 1]+. (0.071 μΜ)
2-Fluoro-3 -methyl-4-(2-f 4- [2-( 1 -oxo- 1.3 -dihvdro^-benzofuran-S-vDethyllpiperazin- 1 - vB ethyllbenzonitrile
2-Fluoro-3-methyl-4-(2-oxoethyl)benzonitrile (21 mg, 0.12 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3//)-one hydrochloride (34 mg, 0.12 mmol) and DIPEA (0.020 mL, 0.12 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (15 mg, 0.24 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50%
MRL-ACV-00045 acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 408) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound.
LC-MS (IE, m/z): 408 [M + 1]+. 1H-N R (500 MHz, CD3CN) δ ppm 2.25 (s, 3H), 2.6-3.6 (v br s, 2 +NH), 3.05, 3.15, 3.31 (br s, m, br s, 16H), 5.284 (s, 2H), 7.196 (d, J= 8.0 Hz, 1H), 7.460
(d, J = 7.8 Hz, 1H), 7.467 (s, 1H), 7.53 (t, J= 8.0 Hz, 1H),. 7.778 (d, J= 7.8 Hz, 1H). (0.080 uM)
2-Fluoro-3-methyl-4-(2-f4-f2-(4-memyl-l-oxo^^^
10 yUethyDbenzonitrile
2-Fluoro-3-methyl-4-(2-oxoethyl)benzonitrile (42 mg, 0.24 mmol) was taken up in methanol (4 mL) and 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3i/)-one hydrochloride (71 mg, 0.24 mmol) and DIPEA (0.0420 mL, 0.24 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (30 mg, 0.48 mmol) was added. After
15 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-
20 50% acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 422) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 422 [M + 1]+. (0.063 μΜ)
2-Memoxy-3-memyl-4-(2-{4-[2-(l-oxo-1.3-dmvdro-2-benzofuran-5-yl)ethyl1piperazin-l- yl ¾ ethyDbenzonitrile
2-Methoxy-3-methyl-4-(2-oxoethyl)benzonitrile (20 mg, 0.106 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3if)-one hydrochloride (32.5 mg, 0.13 mmol) and DIPEA (0.032 mL, 0.18 mmol) were added. After stirring the mixture for 5 minutes
M L-ACV-00045 at room temperature, sodium cyanoborohydride (13.2 mg, 0.21 mmol) was added. After 1 hour, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 3x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 4 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50%
acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 420) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 420 [M + 1]+. (0.18 μΜ)
2-Methoxy-3-methyl-4-(2-{4-[2-(4-memyl-l-oxo-1 -dihvdrcH2-bepzofuran-5-yDethyl1piperaz
1- yl}e1hyl")benzonitrile
2- Methoxy-3-methyl-4-(2-oxoethyl)benzonitrile (40 mg, 0.21 mmol) was taken up in methanol
15 (4 mL) and 4-methyl-5-[2-(pipera2m-l-yl)ethyl]-2-benzofuran-l(3 /)-one hydrochloride (32.5 mg, 0.132 mmol) and DIPEA (0.065 mL, 0.37 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (26.4 mg, 0.42 mmol) was added. After 1 hour, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 3x
20 with DCM. The organic layers were washed with brine, dried over sodium sulfate and
concentrated in vacuo. The residue was taken up in acetonitrile/water (total 7 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (2 runs, eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 434) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 434 [M + if. (0.078 μΜ)
3-Chloro-2-flttoro-4-C2-{4-r2-(l -oxo- 1 J-dihvdro^-benzofuran-S-yl'tethyllpiperazin- 1 - yl ) ethyltbenzonitrile
MRL-ACV-00045
3-Chloro-2-fluoro-4-(2-oxoethyl)benzonitrile (20 mg, 0.10 mmol) was taken up in methanol (3 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-berjzofuran-l(3 /)-one (20 mg free base, 0.080 mmol) was added (no DIPEA since piperidine free amine was used). After stirring the mixture for 15 minutes at room temperature, sodium cyanoborohydride (10 mg, 0.15 mmol) was added. After 5 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 4 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10- 10 50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 428) were
evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/i): 428/430 [M + 1]+. (0.13 μΜ)
15 3-Chloro-2-fluoro-4-(2-{4-[2-( 4-methyl- 1 -oxo- 1.3-dihYdro-2-benzofuran-5-yl)ethyl1piperazin- 1 - vnethvDbenzonitrile
3-Chloro-2-fluoro-4-(2-oxoethyl)benzonitrile (42 mg, 0.21 mmol) was taken up in methanol (3 mL) and 4-memyl-5-[2-(piperazin-l-yl)emyl]-2-benzofuran-l(3/i)-one (44 mg, 0.28 mmol free base) was added (no DIPEA since piperidine free amine was used). After stirring the mixture for
20 5 minutes at room temperature, sodium cyanoborohydride (20 mg, 0.315 mmol) was added.
After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and
25 acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 442) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/i): 442/444 [M + 1]+. (0.078 μΜ)
3-Chloro-2-memoxy-4-(2-{4-f2-(l-oxo-l,3-dihvdro-2^
yl } ethyDbenzonitrile
5 3-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile (26 mg, 0.125 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)emyl]-2-benzofuran-l(3 )-one hydrochloride (28 mg, 0.100 mmol) and DIPEA (0.017 mL, 0.100 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (10 mg, 0.150 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a
10 stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10- 50% acetonitrile water (0.05% TFA)). The main fractions containing M+l = 440) were
15 evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound.
LC-MS (IE, m/z): 440/442 [M + 1]+. (0.16 uM)
3-Chloro-2-mefooxy-4-(2-(4-f2-f4-meftyl-l-oxo-l,3-fl^
20 l-y ethvnbenzonitrile
3-Chloro-2-methoxy-4-(2-oxoethyl)benzonitrile (52 mg, 0.25 mmol) was taken up in methanol (2 mL) and 4-memyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3ii)-one hydrochloride (67 mg, 0.20 mmol) and DIPEA (0.035 mL, 0.20 mmol) were added. After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (25 mg, 0.40 mmol) was added. After
25 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-
MRL-ACV-00045
50% acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 454) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 454/456 [M + 1]+. (0.083 μΜ)
4-Fluoro-2-methoxy-3 -(2- (4-[2-f 1 -oxo- 1.3 -dihvdro-2-benzofuran-5-vDethvllpipera2in- 1 - yl)ethvDbenzonitrile
4-Fluoro-2-methoxy-3-(2-oxoethyl)benzonitrile (35 mg, 0.18 mmol) was taken up in methanol (2 mL) and 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3ii)-one hydrochloride (41 mg, 0.14 mmol)
10 was added (no DIPEA). After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (17 mg, 0.27 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen and the residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo. The residue was taken
15 up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50% acetonitrile/water (0.05% TFA)). The main fractions containing M+l = 424) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. LC-MS (IE, m/z): 424 [M + 1]+. (0.13 uM)
4-Ρ1ηοΓθ-2^6Φο ν-3-(" -(4-[2-(4^6φν1-1-οχο-1.3-ά¾νάτο-2-Γ>6ηζο^3η-5-ν1^Φν11ρΐρ6Γ3 1η- 1 -yl}ethvDbenzonitrile
4-Fluoro-2-methoxy-3-(2-oxoethyl)benzonitrile (35 mg, 0.18 mmol) was taken up in methanol (2 mL) and 4-methyl-5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3/f)-one hydrochloride (43 mg, 0.14 mmol) was added (no DIPEA). After stirring the mixture for 5 minutes at room temperature, sodium cyanoborohydride (17 mg, 0.27 mmol) was added. After 16 hours, LC-MS indicated product formation. Most of the methanol was evaporated under a stream of nitrogen. The residue was diluted with aqueous sodium carbonate and extracted 2x with DCM. The organic layers were washed with brine, dried over sodium sulfate and concentrated in vacuo.
- I l l -
MRl-ACV-00045
The residue was taken up in acetonitrile/water (total 3 mL) and acidified with TFA and the product was isolated by mass directed LC-MS (eluted with a gradient of 10-50%
acetonitrile/water (0.05% TFA)). The clean main fractions containing M+l = 438) were evaporated to give the TFA salt which was converted to the di-HCl salt of the title compound. 5 LC-MS (IE, m/z): 438 [M + if. (0.043 μΜ)
4-({4-[2-i4-Memyl-l-oxo-1 -dihvdro-2-benzofuran-5-yl')ethyl1piperazin-l-yl methyl)-3.4- dihydro-2ff-chromene-7-carbonitrile
10 To a solution of 4-formyl-3,4-dihydro-2//-chromene-7-carbonitrile (50 mg, 0.27 mmol) in DCM (3 mL) was added 4-methyl-5-[2-(pirjerazine-l-yl)ethyl]-2-benzofuran-l(3ii)-one (57 mg, 0.27 mmol), sodium triacetoxyborohydride (27.0 mg, 0.267 mmol) and DIPEA (57 mg, 0.27 mmol). The reaction was stirred under nitrogen at room temperature for 16 hours when LC-MS indicated product formation. The mixture was diluted with DCM and the product was isolated by flash
15 chromatography. LC-MS (IE, m/z): 432 [M + if. (0.18 μΜ)
5-Fluoro-3-({4-r2-(l-oxo-1.3-dihvdro-2-benzofuran-S-vI)ethyllpiperazin-l-v methyl)-3,4- o¾ydro-2.ff-chromene-7-carbonitrile
20 To a 12 mL reaction vial was added 6-fluoro-4-formyl-3,4-dihydro-2/ -chromene-7-carbonitrile (12 mg, 0.058 mmol), 5-[2-(piperazin-l-yl)ethyl]-2-benzofuran-l(3H)-one (14.4 mg, 0.058 mmol) and dichloromethane (3 mL). The solution was stirred at RT under N2 for 10 min. To above solution was added NaB(OAc) H (49.6 mg, 0.23 mmol, 4.0 eq). The reaction was stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The organic
25 phase was dried over MgS04, filtered and purified by flash column chromatography. LC-MS (IE, m/z): 436.3 [M + if. (0.44 μΜ)
MRL-ACV-00045
5.5'- Piperaane-1.4-diyldipropane-1 -diyl)bisi4-methyl-2-ben2ofuran-
To a 12 mL reaction vial was added 2-(4-methyl-l-oxo-l,3-dihydro-2-benzofuran-5-yl)propanal 5 (60 mg, 0.29 mmol), piperazine (12.7 mg, 0.15 mmol) and dichloromethane (5 mL). The solution was stirred at RT under N2 for 10 min. To above solution was added NaEKOAcfeH (125 mg, 0.59 mmol). The reaction was stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The organic phase was dried over MgS04, filtered and purified by flash column chromatography to give desired product. LC-MS (IE, m/z): 463.4 [M + 1]+. *H 10 NM (500 MHz, CDC13, δ in ppm): 7.72 (2H, d, 7= 8.0 Hz), 7.38 (2H, d, J= 8.0 Hz), 5.23 (4H, s), 3.29 (2H, q), 2.3 -2.5 (10H, m), 2.27 (6H, s), 1.25 (6H, d, J= 6.8 Hz). (0.22 uM)
4-Memyl-5-(l-f4-[2-f4-methyl-l-oxo-13-dihvdro-2-ben^
15 benzofuran- 1 (3/jVone
To a 12 mL reaction vial was added 4-methyl-5-[l-(piperazine-l-yl)propan-2-yl]-2-benzofuran- l(3f/)-one (57 mg, 0.208 mmol), (4-methyl-l-oxo-l,3-dihydro-2-benzofuran-5-yl)acetaldehyde (47.4 mg, 0.25 mmol) and dichloromethane (5 mL). The solution was stirred at RT under N2 for 10 min. To above solution was added NaB(OAc)3H (88 mg, 0.42 mmol). The reaction was
20 stirred at RT for 18 hours under N2, extracted with DCM, washed with brine and water. The organic phase was dried over MgS04, filtered and purified by flash column chromatography to give desired product. LC-MS (IE, m/z): 449.4 [M + 1]+. H NMR (500 MHz, CDCI3, δ in ppm): 7.73 (1H, d, = 8.0 Hz), 7.67 (1H, d, J= 8.0 Hz), 7.40 (1H, d, J= 8.0 Hz), 7.32 (1H, d, J = 8.0 Hz), 5.25 (2H, s), 5.23 (2H, s), 3.33 (1H, q), 2.90 (2H, m), 2.4 - 2.6 (12H, m), 2.30 (3H, s),
25 2.27 (3H, s), 1.28 (3H, d, J= 6.6 Hz). (0.034 μΜ)
RL-ACV-00045
4-(2-{4-[2-n-C¾o-1.3-dihydro-2-benzofuran-5^
A mixture of 5-[2-^iperazin-l-yl)ethyl]-2-benzofurari-l(3H)-one (50 mg, 0.20 mmol), 4-(2- 5 Oxoethyl)benzonitrile (30 mg, 0.20 mmol), Sodium Cyanoborohydride (13 mg, 0.20 mmol), and a drop of HO Ac was stirred together in Methanol for 2 hours. LC showed formation of the desired product. The crude was diluted with EtOAc, washed with water, adsorbed onto silica gel, and purified by silica gel chromatography. LC-MS (IE, m/z): 376 [M + 1] . (0.30 uM)
10 Several assays may be used to measure functional inhibition of the ROMK channel by compounds of the instant invention. One primary assay that can be used is a functional 86Rb+ efflux assay that measures the ability of ROMK to permeate 86Rb+, in the absence or presence of test compound. Under control conditions, cells loaded with 86Rb+ and incubated in Rb+-free medium display a time-dependent efflux of the isotope, the rate of which depends on number of
15 functional channels. When cells are incubated in the presence of a channel inhibitor, efflux of 86Rb+ is prevented in a concentration-dependent manner, and IC50 values of inhibition by compounds can be accurately determined. This assay has been established with cell lines expressing either human, rat or dog ROMK channels, and can operate in 96- or 384-well format. Importantly, the human, rat, and dog S6Rb+ efflux assays can be carried out in the presence of up
20 to 100% serum allowing, therefore, an accurate estimation of the effect of protein binding on the inhibitory activity of compounds of interest. Another ROMK functional assay makes use of the ability of thallium to permeate through open ROMK channels and increase the fluorescence of a dye previously loaded into the cells. Under control conditions, cells loaded with dye and exposed to thallium-containing medium display a time-dependent increase in fluorescence, the
25 rate of which depends on number of functional channels. When cells are incubated in the presence of a channel inhibitor, the increase in fluorescence is attenuated in a concentration- dependent manner, and IC50 values of inhibition by compounds can be accurately determined.
This assay has been established with cell lines expressing either human, or rat ROMK channels, and operates in 384-well format.
30 8SRb+ Efflux Assay
Cell Culture Conditions- CHO-DHFR- cells stably expressing hROMKl (Kitl.l) are grown at 37°C in a 10%CO2 humidified incubator in Iscove's Modified Dulbecco's Medium (Gibco 12440) supplemented with HT Supplement, Penicillin/Streptomycin/Glutamine, G418 (500 g/ml) and 10% FBS. Cells are seeded in Sterile and Tissue Culture Treated Packard CulturPlate White
MRL-ACV-00045
Opaque Microplates at a concentration of 5.0E5 - 7.0E5 cells/ml - PerkinElmer 6005680 (96- well); Corning 3707 (384 well) in complete media containing 1.5 μθί/ηιΐ Rubidium-86. Cells are incubated in 37°C-10% CC¾ incubator overnight. On the day of the experiment, the media is removed and cells are washed with low K assay buffer. 86Rb+ efflux is initiated after addition of 5 assay buffer ± test compound followed by 35 min incubation at room temperature. ROMK- sensitive component of efflux is defined in the presence of 10 mM BaCl2. Assay buffer is removed and transferred to a plate and cells are solubilized in the presence of SDS.
Radioactivity associated with assay and cell plate is determined.
Step Protocol
10 1. Remove cell media and wash cells with low K assay buffer (126.9 mM NaCl, 4.6 mM KC1, 2 mM CaCl2, 1 mM MgCl2, 10 mM Hepes/NaOH; pH 7.4)
• 200 μΐ for 96-well plate; 70 μΐ for 384-well plate
2. Add assay buffer (121.5 mM NaCl, 10 mM KC1, 2 mM CaCl2, 1 mM MgCl2, 10 mM Hepes NaOH; pH 7.4) ± test compound to cells
15 · 100 μΐ for 96-well plate; 50 μΐ for 384-well plate
3. Incubate at ambient temperature (22-24 C) for 35 min
4. Remove assay buffer add it to a 96- or 384-well plate containing Microscint-20
• 96-well Plate: 100 μΐ buffer, 170 μΐ MicroScint 20 (for TopCount)
• 384-well plate: 20 μΐ buffer, 50 μΐ Optiphiase (for MicroLux)
20 5. Completely remove remaining assay buffer from cell plate
6. Solubilize cells with 1% SDS; than add MicroScint or Optiphase
• 96-well Plate: 30 μΐ SDS, 170 μΐ MicroScint 20 (for TopCount)
• 384-well plate: 20 μΐ SDS, 50 μΐ Optiphiase (for MicroLux)
7. Seal both cell and supernatant plates and count
25 Data Calculation- Radioactivity associated with the assay plate is normalized to the total
radioactivity (assay + cell plates) to provide % efflux, under each condition. % efflux in the presence of 10 mM BaCl2 is subtracted from each experimental point to provide the ROMK- sensitive component of 86Rb+ efflux. In the absence of test compound, this number corresponds to 100% control efflux. IC50 values represent the concentration of compound that inhibits 50%
30 of ROMK efflux. Normally, a control compound is included to support that the assay is giving consistent results compared to previous measurements, although the control is not required to obtain the results for the test compounds. The control can be any compound of Formula I of the present invention, preferably with an IC50 potency of less than 1 μΜ in this assay. Alternatively, the control could be another compound (outside the scope of Formula I) that has an IC50 potency
35 in this assay of less than 1 μΜ.
All the Examples of compounds of the present invention described above were tested in the 8 Rb+ Efflux Assay described herein and all had potencies of at least 1 uM or lower.
MRL-ACV-00045
Representative examples of data collected for compounds of the present invention using the 86Rb+ Efflux Assay are shown in Table 1 below.
TABLE 1
Thallium Flux Assay
Cell Culture Conditions- HEK293 cells stably expressing hROM (hKirl.l) are grown at 37°C in a 10%C<¾ humidified incubator in complete growth media: Dulbecco's Modified Eagle Medium
5 supplemented with non-essential amino acids, Penicillin/Streptomycin/Glutamine, G418 and FBS. At >80% confluency, aspirate the media from the flask and rinse with 10 ml
Calcium/Magnesium-free PBS. Add 5 ml of IX trypsin (prepared in Ca Mg Free PBS) to T-225 flask and return flask to 37"C/CC>2 incubator for 2-3 minutes. To dislodge the cell, gently bang the side of the flask with your hand. Triturate the cells completely and then transfer the cells to
10 25 ml complete media. Centrifuge at 1,500 rpm for 6 min followed by resuspension in complete growth media and determine cell concentration. For typical re-seeding, 4E6 cells/T-225 flask will attain >80% confluency in 4 days. Under ideal growth conditions and appropriate tissue culture practices, this cell line is stable for 40-45 passages.
15 FluxOR Kit Components (Invitrogen F10017)
• FluxOR™ Reagent (Component A)
• FluxOR™ Assay Buffer (Component B) - 10X Concentrate
• PowerLoad™ Concentrate (Component C) - 100X Concentrate
• Probenecid (Component D) - Lyophilized sample is kept at -20°C. Water soluble, 100X 20 after solubilization in 1 ml water. Store at 4°C.
• FluxOR™ Chloride-free Buffer (Component E) - 5X Concentrate
• Potassium sulfate (K2SO4) Concentrate (Component F) - 125 mM in water. Store at 4°C.
• Thallium sulfate (TI2SO4) Concentrate (Component G) - 50 mM in water. Store at 4°C
• DMSO (dimethyl sulfoxide, Component H) - 1 ml (100%)
MRL-ACV-00045
Reagent preparation- FluxO Working Solutions
• 1000X FluxOR™ Reagent: Reconstitute a vial of component A in 100 μΐ DMSO; Mix well; Store 10 μΐ aliquots at -20°C
5 · IX FluxOR™ Assay Buffer: Dilute Component B 10-fold with water; Adjust pH to 7.4 with Hepes/NaOH; Filter and store at 4°C
• Probenecid/Assay Buffer: 100 ml of IX FluxOR™ Assay Buffer; 1 ml of reconstituted component D; Store at 4°C
• Loading Buffer (per microplate): 10 μΐ 1000X FluxOR™ Reagent; 100 μΐ component C; 10 10 ml Probenecid/Assay Buffer
• Compound Buffer (per microplate): 20 ml Probenecid/Assay Buffer; 0.3 mM ouabain (10 mM ouabain in water can be stored in amber bottle/aluminum foil at room temperature); Test compound
• IX FluxOR™Chloride-Free Buffer: Prepare IX working solution in water. Can be stored 15 at room temperature
• Stimulant Buffer (prepared at 5X final concentration in IX FluxOR™Chloride-Free
Buffer): 7.5 mM Thallium sulfate and 0.75 mM Potassium sulfate (to give a final assay concentration of 3 mM Thallium/ 0.3 mM Potassium). Store at 4°C when not in use. If kept sterile, this solution is good for months.
20 Assay protocol- The ROMK channel functional thallium flux assay is performed in 384 wells, using the FLIPR-Tetra instrument. HEK-hKirl.l cells are seeded in Poly-D-Lysine microplates and kept in a 37°C-10%CO2 incubator overnight. On the day of the experiment, the growth media is replaced with the FluxOR™ reagent loading buffer and mcubated, protected from light, at ambient temperature (23-25°C) for 90 min. The loading buffer is replaced with assay buffer ± 25 test compound followed by 30 min incubation at ambient temperature, where the
Thallium/Potassium stimulant is added to the microplate.
Step Protocol
1. Seed HEK-hKirl.l cells (50 μΐ at 20,000 cells/well) in 384-well PDL coated Microplates
2. Allow cells to adhere overnight in humidified 37°C/10%CO2 incubator
30 3. Completely remove cell growth media from microplate and replace with 25 μΐ loading buffer
4. Incubate Microplate at room temperature, protected form light, for 90 min
5. Remove loading buffer and replace with 25 μΐ lx Assay Buffer ± test compound.
6. Incubate microplate at room temperature, protected form light, for 30 rain
7. At FLIPR-Tetra 384: Add stimulant (Thallium/Potassium) solution to microplate and 35 monitor fluorescence. Excitation = 400 nm, Emission = 460 & 580 nm. Collect data for ~
10 min.
Data Calculation- The fluorescence intensity of wells containing 3 μΜ of a standard control ROMK inhibitor of the present invention is used to define the ROMK-sensitive component of
M L-ACV-00045 thallium flux. Fluorescence in the presence of test compounds is normalized to control values to provide % fluorescence change. IC50 values represent the concentration of compound that inhibits 50% of the ROMK thallium flux signal.
Assay Standard- Normally, a control compound is included to support that the assay is giving 5 consistent results compared to previous measurements, although the control is not required to obtain the results for the test compounds. The control can be any compound of Formula I of the present invention, preferably with an IC50 potency of less than 1 uM in this assay. Alternatively, the control could be another compound (outside the scope of Formula I) that has an IC50 potency in this assay of less than 1 uM.
10 Representative examples of data collected for compounds of the present invention, including Example 95, using the Thallium Flux Assay are shown in Table 2 below.
TABLE 2
While the invention has been described with reference to certain particular embodiments thereof, numerous alternative embodiments will be apparent to those skilled in the art from the teachings described herein. Recitation or depiction of a specific compound in the claims (i.e., a 5 species) without a specific stereoconfiguration designation, or with such a designation for less than all chiral centers, is intended to encompass the racemate, racemic mixtures, each individual enantiomer, a diastereoisomeric mixture and each individual diastereomer of the compound where such forms are possible due to the presence of one or more asymmetric centers. All patents, patent applications and publications cited herein are incorporated by reference in their 10 entirety.
Claims
WHAT IS CLAIMED IS:
A compound having structural Formula I:
X R5 /— \ R6 Y
R7 is selected from -H, -F, -CH3, -CF3, -CHF2, -CH2F, -CH20H, cyclopropyl or
-CH2C(=0)0-CH3, or R? represents di-substitution on a single carbon with two of-F or two of
one of Wl and W2 is N and the other is CH; R1 and R2 are each independently selected from -H, -F, -CI, -Br, -C3-C6cycloalkyl, -OR8, -SR , -SOR8, -S02R8, -(CH2)nOR8 or -Ci-6alkyl optionally substituted with 1-3 of -F;
one of R3a and R3b is selected from -CN, -NO2 or tetrazoly, and the other is R-*c wherein R3c selected from -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl or -OCi^alkyl optionally substituted with 1-3 of -F;
one of R4 and R4 is selected from CN, -NO2 or tetrazolyl, and the other is R4c wherein R4c is selected from -H, -F, -CI, -Br, -CH3, -S-CH3, -NH-CH3, -O-cyclopropyl or -OCl-3alkyl optionally substituted with 1-3 of -F;
R , R , R" and R are each independently selected from -H, -F, -CI, -CH3 optionally substituted with 1 to 3 of -F, or -OCH3 optionally substituted with 1 to 3 of -F;
c d
R and R are each independently selected from -H, -F, -CI, -Ci_6alkyl optionally substituted with 1 to 3 of -F, -C3-6cycloalkyl or -OCi-gallcyl optionally substituted with 1 to 3 of -F;
R and R are each independently selected from -H or -CH3;
X and X1 are each independently selected from -H or -C}-6alkyl,
1 1
or X is joined together with Z and the carbon to which both are attached to form a fused ring system selecte
Y and Y are each independently selected from -H or -C 1 -6alkyl,
1 2
or Y is joined together with Z and the carbon to which both are attached to form a fused ring system
5 1
or R is joined together with Z and the intervening carbons to which each is attached to form a fused ring system selected from:
or R6 is joined together with Z2 and the intervening carbons to which each is attached to form a fused ring system selected from:
5 provided that only one of and Ίλ or R0 and Z2 is joined to form the fused ring system; and R is selected from -Ci -ealkyl or --C3~6cycloalkyl.
2. The compound of claim 1 wherein:
X and X are each independently selected from -H or -Cj -6alkyl;
Y and Y are each independently selected from -H or -C l -6alkyl
or Y f 1 iiss jjooiinneedd ttooggeetthheerr wwith Z and the carbon to which both are attached to form a fused ring system selected from :
R is selected from -H, -CH3, -C^ alkyl or ~C(0)OCi-3alkyl; and
R6 is selected from -H, -CH3, -Cj-g alkyl or -C(0)OC 1 -3 alkyl,
or R6 is joined together with Z2 and the intervening carbons to which each is attached to form a fused ring system selected from:
pharmaceutically acceptable salt thereof.
3. The compound of claim 1 wherein
R is -H;
R and R are independently selected from -H or -CH3; R and R are each independently selected from -H, -F, -CI, -CH3 optionally substituted with 1 to 3 of -F, or -OCH3 optionally substituted with 1 to 3 of -F;
Raa and R are each independently selected from -H or -F
c d
R and R are each independently selected from -H, ~F, -CI, -CH3 optionally substituted with 1 5 to 3 of -F, or -OCH3 optionally substituted with 1 to 3 of -F;
R5 is selected from -H or -CH3;
R is selected from -H or -CH3; or R6 is joined together with Z2 and the intervening carbons to which each is attached to form a fused ring system;
X, X and Y are each -H; and
1 1 2
i0 Y is -H, or Y is joined together with Z and the carbon to which both are attached to form the fused ring system;
or a pharmaceutically acceptable salt thereof,
4. The compound of claim 1 selected from:
( 5 1 ,4-Bis [2-(4-nitrophenyl)ethyl]piperazine;
2-Methoxy-4-(2 - { 4- [2-( 1 -oxo- 1 , 3 -dihydro-2-benzofuran- 5 -yl)ethyl]piperazin- 1 - yl } ethy l)benzonitrile ;
2-Methoxy-4-[2-[4-[2-(4~methyl-l -oxo-3H-isobenzofuran-5-yl)ethyl]piperazin- 1 - yl]ethyl]benzonitrile;
Ϊ0 5,5'-(Piperazine-l ,4-diyldiethane-2,l-diyl)bis(4-methyl-2-benzofuran-l (3H)-one);
5 ,5'-(Piperazine- 1 ,4-diyldiethane-2, 1 -diyl)bis(2-benzofuran- 1 (3H)-one
2-Ethoxy-4~(2- {4-[2-(l -oxo- 1 ,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin- 1 - yl } ethyl)benzonitrile ;
4-Fluoro-2-methoxy-3-(2-{4-[2-(4-methyl-l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin- 25 l-yl}ethyl)benzonitrile;
4-Methyl-5-( 1 - {4- [2-(4-methyl- 1 -oxo- 1 ,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin- 1 -yl } -2- benzofuran- 1 (3H)-one;
2~Methoxy-4 -(2- { 4- [2- (3 -methyl- 1 -oxo-3 ,4-dihydro- 1 H-isochromen-6-y l)ethyl] piperazin- 1 - yl } ethyl)benzonitrile ;
30 2,2-Dimethyl-l ,4-bis[2-(4-nitrophenyl)ethyl]piperazine;
(1 S,4S)-2,5-Bis[2-(4-nitrophenyl)ethyl]-2,5-diazabicyclo[2.2.1 ]heptane;
(6R)-6-{4-[2-(4-Nitrophenyl)ethyl]piperazin-l-yl}-5,6,7,8-tetrahydronaphthalene-2-carbonitrile; 4-Methyl-5-[2-[4-[2-[6-(tetrazol-l-yl)-3-pyridyl]ethyl]piperazin-l-yl]ethyl]-3H-isobenzofur^ one;
35 2-Methoxy-4-(2- { 4- [2-( 1 -oxo- 1 ,3 -dihydro-2-benzofuran- 5-y I)ethy 1] -2- (trifiuoromethyl)piperazin- 1 -yl } ethyl)benzonitrile; 4-(2- { 4- [2- (4-Methyl- 1 -oxo- 1 ,3 -dihydro-2~benzoforan-5 -yl)ethyl]piperazin- 1 - yl } ethyl)naphtl alene- 1 -carbonitrile ;
4-(2- {4-[2~( 1 -oxo- 1 ,3 -dihydro-2-benzofuran-5-yl)ethyl]piperazin- 1 -yl } ethyl)benzonitriIe;
(3 S, 3 'S)-6 ,6'-(Piperazine- 1 ,4-diyldiethane-2 , 1 -diyl)bis(3-methyl-3 ,4-dihydro- 1 H-isochromen- 1 - one);
2-(Methylamino)-4-(2- {4- [2-( 1 -oxo- 1 ,3 -dihydro-2-benzofuran-5-yl)ethyl jpiperazin- 1 - yl } ethyl)benzonitrile;
2- Fluoro-4-[2-[4-[2-(l-oxo-3H-isobenzofuran-5-yl)ethyl]piperazin-l-yl]ethyl]benzonitrile;
2~(Cyclopropyloxy)-4-(2- { 4- [2-( 1 -oxo- 1 , 3 -dihydro-2-benzofuran-5 -yl)ethyl]piperazin- 1 - yl } ethyl)benzonitrile ;
3 - Chloro-2-fluoro-4-(2- {4- [2-(4-methyl- 1 -oxo- 1 ,3 -dihydro-2-benzofuran-5-yl)ethyl3piperazin-l- yl } ethyl)benzonitrile ; or
4~Fluoro-2-methoxy-3-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofui-an-5-yl)ethyl]piperazin~l- yl } ethyl)benzonitrile ;
or a pharmaceutically acceptable salt thereof.
5. The compound of claim 1 selected from:
1 ,4-B is [2-(4-nitrophenyl)ethyl]piperazine ;
4s4'-(Piperazine- 1 ,4-diyldiethane-2, 1 -diyl)dibenzonitrile;
2-Methoxy-4-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l- yl } ethyl)benzonitrile ;
2-Methoxy-4-[2-[4-[2-(4-methyl-l-oxo-3H-isobenzofuran-5-yl)ethyl3piperazin-l- yl]ethyl] benzonitrile ;
5 ,5'-(Piperazine- 1 ,4-diyldiethane-2 , 1 -diyl)bi s(4-methyl-2-benzofuran- 1(3 H)-one) ;
5,5'-(Piperazine- 1 ,4-diyldiethane-2, 1 -diyl)bis(2-benzofuran- 1 (3H)-one;
2-Ethoxy-4-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l- yl} ethyl)benzonitrile;
4- Fluoro-2-methoxy-3-(2- {4-[2-(4-methyl- 1 -oxo- 1 ,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-
1 -yl } ethyl)benzonitrile ;
4-Methyl- 5 -( 1 - {4- [2-(4-methy 1- 1 -oxo- 1 ,3 -dihydr o-2-benzofuran- 5 -yl)ethyl]piperazin- 1 -yl } -2- benzofuran-l(3H)-one; or
4-(2-{4-[2-(l-oxo-l,3-dihydro-2-benzofuran-5-yl)ethyl]piperazin-l-yl}ethyl)benzonitrile;
or a pharmaceutically acceptable salt thereof.
6. A pharmaceutical composition comprised of a compound of claim 1 and a pharmaceutically acceptable carrier.
7. A method for inhibiting ROM comprising administering a compound of claim 1 in a ROMK-inhibitory effective amount to a patient in need thereof.
8. A method for causing diueresis, natriuresis or both, comprising administering a compound of claim 1 in a therapeutically effective amount to a patient in need thereof.
9. A method for the treatment of hypertension, heart failure or both comprising administering a compound of claim 1 in a therapeutically effective amount to a patient in need thereof.
10. A method for the treatment or prophylaxis of one or more disorders selected from hepatic cirrhosis, acute and chronic kidney insufficiency, nephrotic syndrome, pulmonary arterial hypertension, cardiovascular disease, diabetes, endothelial dysfunction, diastolic dysfunction, stable and unstable angina pectoris, thromboses, restenosis, myocardial infarction, stroke, cardiac insufficiency, pulmonary hypertonia, atherosclerosis, ascitis, preeclampsia, cerebral edema, nephropathy, hypercalcemia, Dent's disease, Meniere's disease or kidney stones comprising administering a compound of claim 1 in a therapeutically or prophylactically effective amount as appropriate, to a patient in need thereof.
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US20130225561A1 (en) | 2013-08-29 |
EP2632465A4 (en) | 2014-03-26 |
US9073882B2 (en) | 2015-07-07 |
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