WO2010138194A2 - Immunomodulatory agent-polymeric compounds - Google Patents

Immunomodulatory agent-polymeric compounds Download PDF

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Publication number
WO2010138194A2
WO2010138194A2 PCT/US2010/001561 US2010001561W WO2010138194A2 WO 2010138194 A2 WO2010138194 A2 WO 2010138194A2 US 2010001561 W US2010001561 W US 2010001561W WO 2010138194 A2 WO2010138194 A2 WO 2010138194A2
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WO
WIPO (PCT)
Prior art keywords
compound
substituted
carbon atoms
combined
alkyl
Prior art date
Application number
PCT/US2010/001561
Other languages
French (fr)
Other versions
WO2010138194A3 (en
Inventor
Charles Zepp
Grayson B. Lipford
Yun Gao
Lloyd Johnston
Fen-Ni Fu
Mark J. Keegan
Sam Baldwin
Original Assignee
Selecta Biosciences, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to EA201171480A priority Critical patent/EA030246B1/en
Application filed by Selecta Biosciences, Inc. filed Critical Selecta Biosciences, Inc.
Priority to BRPI1010674A priority patent/BRPI1010674A2/en
Priority to JP2012513053A priority patent/JP6297776B2/en
Priority to EP10726348A priority patent/EP2435095A2/en
Priority to CA2762653A priority patent/CA2762653A1/en
Priority to MX2011012599A priority patent/MX2011012599A/en
Priority to KR1020117030993A priority patent/KR101916875B1/en
Priority to CN201080028246.XA priority patent/CN102481376B/en
Priority to AU2010254551A priority patent/AU2010254551B2/en
Priority to KR1020187031961A priority patent/KR20180122487A/en
Publication of WO2010138194A2 publication Critical patent/WO2010138194A2/en
Publication of WO2010138194A3 publication Critical patent/WO2010138194A3/en
Priority to IL216550A priority patent/IL216550A/en

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    • C—CHEMISTRY; METALLURGY
    • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
    • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
    • C08G63/00—Macromolecular compounds obtained by reactions forming a carboxylic ester link in the main chain of the macromolecule
    • C08G63/91—Polymers modified by chemical after-treatment
    • C08G63/912—Polymers modified by chemical after-treatment derived from hydroxycarboxylic acids
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    • A61K39/39—Medicinal preparations containing antigens or antibodies characterised by the immunostimulating additives, e.g. chemical adjuvants
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D473/00—Heterocyclic compounds containing purine ring systems
    • C07D473/26—Heterocyclic compounds containing purine ring systems with an oxygen, sulphur, or nitrogen atom directly attached in position 2 or 6, but not in both
    • C07D473/32—Nitrogen atom
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    • C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04—Ortho-condensed systems
    • C—CHEMISTRY; METALLURGY
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    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D473/00—Heterocyclic compounds containing purine ring systems
    • C07D473/26—Heterocyclic compounds containing purine ring systems with an oxygen, sulphur, or nitrogen atom directly attached in position 2 or 6, but not in both
    • C07D473/32—Nitrogen atom
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    • C08G63/06—Polyesters derived from hydroxycarboxylic acids or from polycarboxylic acids and polyhydroxy compounds derived from hydroxycarboxylic acids
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    • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
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    • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
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    • C08G64/00—Macromolecular compounds obtained by reactions forming a carbonic ester link in the main chain of the macromolecule
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    • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
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Definitions

  • This invention relates to compositions, and related compounds and methods, of conjugates of immunomodulatory agents and polymers or unit(s) thereof.
  • the conjugates may be contained within synthetic nanocarriers, and the immunomodulatory agents may be released from the synthetic nanocarriers in a pH sensitive manner.
  • Immunomodulatory agents are used to produce immune responses in subjects. It is at times advantageous to attach such agents to delivery vehicles.
  • known attachment chemistries often require certain reactive groups, utilize certain activation steps for attachment to occur, and/or result in conjugates that do not exhibit optimal properties.
  • the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof.
  • the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
  • the present invention provides a compound that comprises a structure as in formula (II):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl;
  • Y N or C;
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit
  • the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof.
  • the polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof.
  • the polymer is biodegradable.
  • Rj is H
  • R 2 is isobutyl
  • Y is C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is hydroxyisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino. In one embodiment, Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • composition further comprises a pharmaceutically acceptable excipient.
  • a synthetic nanocarrier that comprises the compound having a formula (I) or (II).
  • the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen.
  • the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature.
  • the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle.
  • a composition is provided comprising a synthetic nanocarrier.
  • the composition further comprises a pharmaceutically acceptable excipient.
  • a composition comprising a vaccine comprising a compound of formula (I) or (II) is provided.
  • a composition comprising a vaccine comprising a composition comprising a compound of formula (I) or (II) is provided.
  • a composition comprising a vaccine comprising the synthetic nanocarrier comprising a compound of formula (I) or (II) is provided.
  • a method comprises a administering to a subject any of the above described compounds, compositions, or synthetic nanocarrier is provided.
  • an immune response is induced or enhanced in the subject following administering to a subject any of the above described compounds, compositions, or synthetic nanocarrier.
  • R 1 H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino
  • R 2 H, alkyl, or substituted alkyl
  • Y N or C
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected
  • Rg is a biodegradable polymer or unit
  • the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof.
  • the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino
  • R 2 H, alkyl, or substituted alkyl
  • Y N or C
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected
  • R 5 is a polymer or unit thereof;
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl;
  • Y N or C;
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit
  • H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino
  • R 2 H, alkyl, or substituted alkyl
  • Y N or C
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected
  • R 5 is a polymer or unit thereof
  • the alcohol is a polymer or unit thereof with a terminal hydroxyl group.
  • the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof.
  • the polymer or unit thereof comprises, poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof.
  • the catalyst is a phosphazine base, 1 ,8-diazabicycloundec-7-ene, 1,4,7-triazabicyclodecene, or N- methyl-l,4,7-triazabicyclodecene.
  • the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
  • the polymer or unit thereof does not comprise polyketal or unit thereof.
  • Ri is H, R 2 is isobutyl, Y is C, and R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Rj is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, Rj is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • the present invention provides a compound that comprises a structure as in formula (IV):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl;
  • Y N or C;
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • X is C, N, O,
  • Ri is H, R 2 is isobutyl, Y is C, and R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • Rj is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • a composition is provided having a compound of formula (IV).
  • the present invention provides a method for making a compound that comprises a structure as in formula (IV):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl;
  • Y N or C;
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • X is C, N, O,
  • R 1 is H
  • R 2 is isobutyl
  • Y is C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is hydroxyisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • Rj is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, Rj is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
  • the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
  • the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
  • the compound of formula (VII) is selected from the group consisting polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co-poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co- poly(ethylene)glycol, poly(propylene) glycol, and poly(hexamethylene carbonate)diol.
  • the catalyst is a phosphazine base, 1 ⁇ -diazabicycloundec ⁇ -ene, 1 ,4,7-triazabicyclodecene, or N-methyl-MJ-triazabicyclodecene.
  • the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
  • the polymer does not comprise polyketal or unit thereof.
  • Ri is H
  • R 2 is isobutyl
  • Y is C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • R 1 is ethoxymethyl
  • R 2 is hydroxyisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • R 1 is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • R 1 is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, R 1 is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino. In still yet another embodiment, Y is N, R 1 is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • each R 4 independently, is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the carbon atoms of the
  • the polymer is selected from the group consisting of polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co- poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran).
  • the polymer includes a unit of a polymer.
  • the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
  • the polymer does not comprise polyketal or unit thereof.
  • Ri is H
  • R 2 is isobutyl
  • Y is C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is hydroxyisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Ri is ethoxymethyl
  • R 2 is methanesulfonamidoisobutyl
  • Y C
  • R 3 and R 4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
  • Rj is OH
  • R 2 is benzyl
  • Y N
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butylamino
  • Y is N
  • Ri is OH
  • R 2 is benzyl
  • R 3 is absent
  • R 4 is butoxy.
  • Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is benzylamino. In yet a further embodiment, Y is N, Ri is OH, R 2 is benzyl, R 3 is absent, and R 4 is pentyl.
  • composition comprising the above compounds.
  • the composition further comprises a pharmaceutically acceptable excipient.
  • a synthetic nanocarrier that comprises any of the foregoing compounds.
  • the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen.
  • the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature.
  • the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle.
  • composition comprising any of the foregoing synthetic nanocarriers is provided.
  • the composition further comprises a pharmaceutically acceptable excipient.
  • compositions comprising a vaccine comprising any of the foregoing compounds are provided. In yet another embodiment, a composition comprising a vaccine comprising any of the foregoing compositions is provided. In another embodiment, a composition comprising a vaccine comprising any of the foregoing synthetic nanocarriers is provided.
  • a method comprising administering any of the foregoing compounds, compositions or synthetic nanocarriers to a subject.
  • the method is one where an immune response is induced or enhanced in the subject.
  • compositions, synthetic nanocarriers, and vaccines comprising any of the compounds provided are also provided.
  • any of the methods of making a compound provided herein are also provided.
  • Fig. 1 shows the release of resiquimod (R848) from synthetic nanocarrier formulations at pH 7.4, 37 0 C.
  • Fig. 2 shows the release of R848 from synthetic nanocarrier formulations at pH 4.5, 37 0 C.
  • Fig. 3 shows the release of R848 from synthetic nanocarrier formulations at pH 7.4 and pH 4.5 at 24 hours.
  • Fig. 4 shows the level of antibody induction by synthetic nanocarriers with a CpG- containing immunostimulatory nucleic acid (Groups 2 and 3) as compared to the level of antibody induction by synthetic nanocarriers without the CpG-containing immunostimulatory nucleic acid (Group 1).
  • Fig. 5 shows the level of antibody induction by synthetic nanocarriers that release a phosphodiester, non-thioated CpG-containing immunostimulatory nucleic acid or a thioated CpG-containing immunostimulatory nucleic acid.
  • Fig. 6 shows the level of antibody induction by synthetic nanocarriers that release R848 at different rates.
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
  • R 8 is a biodegradable polymer or unit thereof.
  • an immunomodulatory agent When using synthetic nanocarriers to produce an immune response in a subject, it is advantageous to include with the synthetic nanocarriers an immunomodulatory agent.
  • an agent includes agents that are immunomodulatory when uncoupled from the synthetic nanocarrier but may not exhibit immunomodulatory properties when coupled to the synthetic nanocarrier. It is particularly advantageous to include the immunomodulatory agent as part of the synthetic nanocarriers itself. To achieve this, the immunomodulatory agent may be covalently attached to an appropriate polymer or unit thereof.
  • the compounds and conjugates provided herein in some embodiments, comprise an immunomodulatory agent, which also is intended to include an agent that is immunomodulatory when uncoupled from the polymer or unit thereof but that may not exhibit immunomodulatory properties when coupled to the polymer or unit thereof.
  • the compounds provided herein can be incorporated into one or more synthetic nanocarriers.
  • the compounds are incorporated into synthetic nanocarriers by methods known in the art or described elsewhere herein.
  • the polymer or unit thereof of the compounds or conjugates provided is a biodegradable polymer or unit thereof.
  • the polymer or unit thereof therefore, may comprise a polyester, polycarbonate, or polyamide, or unit thereof. It follows that the polymer or unit thereof may comprise poly(lactic acid), poly(glycolic acid), poly(lactic-co- glycolic acid), or polycaprolactone, or unit thereof.
  • the polymer comprises a polyether, such as poly(ethylene glycol) (PEG) or unit thereof
  • the polymer is a block-co-polymer of a polyether and a biodegradable polymer such that the polymer is biodegradable.
  • the polymer or unit thereof does not comprise a polyether, such as poly(ethylene glycol), or unit thereof.
  • the polymer does not solely comprise a polyether or unit thereof, such as poly(ethylene glycol), or unit thereof.
  • the compounds, conjugates, and synthetic nanocarriers provided herein are unique in composition and are useful for the preparation of vaccines and associated materials.
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
  • R 8 is a biodegradable polymer or unit thereof.
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
  • R 8 is a polymer or unit thereof.
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit thereof
  • X C, N, O, or S
  • R 6 and R 7 are each independently absent, H, or substituted.
  • R 9 , Rio, Ri 1 , and Ri 2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
  • agents such as immunomodulatory agents, comprising a structure as in formula (III)
  • agents such as immunomodulatory agents, comprising a structure as in formula (III)
  • terminal alcohols are less reactive, making attachment chemistry problematic.
  • imides such as those comprising a structure as in formula (IV)
  • the resulting reaction product links the imide to the alcohol via an ester bond.
  • a method for making a conjugate that comprises a structure as in formula (II):
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit thereof
  • X is C, N, O, or S
  • R 6 and R 7 are each independently H or substituted
  • R 9 , Rio, Rn, and Ri 2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound.
  • a method for making a conjugate that comprises a structure as in formula (II): comprises: combining an alcohol and a compound comprising a structure as in formula (IV):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit thereof
  • X is C, N, O, or S
  • R 6 and R 7 are each independently H or substituted
  • R9, Rio, Rn, and Rj 2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst.
  • Rj H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl
  • R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • R 5 is a polymer or unit thereof; X is C, N, O, or S;
  • R ⁇ and R 7 are each independently H or substituted
  • R 9 , R] 0 , Rii, and Ri 2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
  • the imide compound comprises a structure as in formula (IV):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl
  • R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • X is C, N, O, or S
  • R 6 and R 7 are each independently H or substituted
  • R 9 , Rio, Rn, and R i2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
  • a compound can be made by methods that comprise combining, in the presence of a solvent and/or heat, with or without a dehydrating agent, such as a carboxylic acid anhydride or acetic anhydride, and a base, such as pyridine compound, a compound that comprises a structure as in formula (III):
  • Ri H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
  • R 2 H, alkyl, or substituted alkyl
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
  • X is C, N, O, or S
  • R ⁇ and R 7 are each independently H or substituted
  • R9, Rio, Rn, and Rj 2 are each independently H, a halogen, OH, thio, NH 2 , or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
  • the inventors have also unexpectedly and surprisingly discovered that it is possible to make polymeric synthetic nanocarriers using polymers that have a weight average molecular weight ranging from about 800 Daltons to about 10,000 Daltons, as determined using gel permeation chromatography. In the formulation of polymeric synthetic nanocarriers, it has been generally believed that the molecular weight of polymers should be or exceed 10,000 Daltons. At times, it is advantageous to append to the polymers an immunomodulatory compound that can be released from the synthetic nanocarrier by a nonspecific degradation step within the body. If the synthetic nanocarriers are to be used to target the endosomal/lysosomal compartment, then it is particularly advantageous to have this degradation step occur preferentially at an acidic pH.
  • the compounds provided herein or the synthetic nanocarriers that comprise the compounds may also be pH sensitive (i.e., exhibit increased release of the immunomodulatory agent at or about a pH of 4.5 as compared to the release of the immunomodulatory agent at or about physiological pH (i.e., pH or 7.4).
  • the property of having relatively low release of immunomodulatory agents at or about physiological pH but increased release at or about a pH of 4.5 is desirable for it targets the immunomodulatory agents to the endosomal/lysosomal compartment of, for example, antigen presenting cells (APCs) which tend to possess a pH that is at or about 4.5. This low pH level is found primarily in the upper gastrointestinal tract and endosome/lysosomes.
  • accelerated release at pH at or about 4.5 provides for an enhanced concentration of the immunomodulatory agent in the target compartment.
  • the immunomodulatory agent exhibits a pH sensitive dissociation and is then free to interact with receptors within the endosome/lysosome and stimulate a desired immune response.
  • the coupling of the polymer may occur at a position on the immunomodulatory agent or compound of interest that, generally, substantially reduces or eliminates the biological activity of the immunomodulatory agent or compound of interest, the coupling can effectively produce a "pro-drug" like effect.
  • This effect in combination with accelerated release in conditions present in the endosome/lysosome, means that off-target effects (e.g., adverse events) are reduced and safety margins increased for compositions and vaccines that comprise the inventive compounds and compositions.
  • administering means providing a compound, conjugate, synthetic nanocarrier, or composition provided herein to a patient in a manner that is pharmacologically useful.
  • APC targeting feature means one or more portions of which the inventive synthetic nanocarriers are comprised that target the synthetic nanocarriers to professional antigen presenting cells ("APCs"), such as but not limited to dendritic cells, SCS macrophages, follicular dendritic cells, and B cells.
  • APC targeting features may comprise immunofeature surface(s) and/or targeting moieties that bind known targets on APCs.
  • APC targeting features may comprise one or more B cell antigens present on a surface of synthetic nanocarriers.
  • APC targeting features may also comprise one or more dimensions of the synthetic nanoparticles that is selected to promote uptake by APCs.
  • targeting moieties for known targets on macrophages comprise any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on macrophages (i.e., subcapsular sinus-Mph markers).
  • entity e.g., protein, lipid, carbohydrate, small molecule, etc.
  • Exemplary SCS-Mph markers include, but are not limited to, CD4 (L3T4, W3/25, T4); CD9 (p24, DRAP-I, MRP-I); CDl Ia (LFA- l ⁇ , ⁇ L Integrin chain); CDl Ib ( ⁇ M Integrin chain, CR3, MoI, C3niR, Mac-1); CDl Ic ( ⁇ X Integrin, pl50, 95, AXb2); CDwl2 (p90-120); CD13 (APN, gpl50, EC 3.4.1 1.2); CD14 (LPS-R); CD15 (X-Hapten, Lewis, X, SSEA-I, 3-FAL); CD15s (Sialyl Lewis X); CD15u (3' sulpho Lewis X); CD15su (6 sulpho-sialyl Lewis X); CD 16a (FCRIIIA); CD16b (FcgRIIIb); CDwI 7 (Lactosylceramide, LacC
  • targeting moieties for known targets on dendritic cells comprise any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on DCs (i.e., a DC marker).
  • entity e.g., protein, lipid, carbohydrate, small molecule, etc.
  • DC markers include, but are not limited to, CDIa (R4, T6, HTA-I); CDIb (Rl); CDIc (M241, R7); CDId (R3); CDIe (R2); CDl Ib ( ⁇ M Integrin chain, CR3, MoI, C3niR, Mac-1); CDl Ic ( ⁇ X Integrin, pl50, 95, AXb2); CDwI 17 (Lactosylceramide, LacCer); CD19 (B4); CD33 (gp67); CD 35 (CRl, C3b/C4b receptor); CD 36 (GpIIIb, GPIV, PASIV); CD39 (ATPdehydrogenase, NTPdehydrogenase-1); CD40 (Bp50); CD45 (LCA, T200, B220, Ly5); CD45RA; CD45RB; CD45RC; CD45RO (UCHL- 1); CD49d (VLA-4 ⁇ , ⁇ 4 Integrin); CD49e (VLA-5 ⁇ , ⁇ ,
  • targeting can be accomplished by any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on B cells (i.e., B cell marker).
  • entity e.g., protein, lipid, carbohydrate, small molecule, etc.
  • Exemplary B cell markers include, but are not limited to, CDIc (M241, R7); CDId (R3); CD2 (E-rosette R, TI l, LFA-2); CD5 (Tl, Tp67, Leu-1, Ly-I); CD6 (T12); CD9 (p24, DRAP-I, MRP-I); CDl Ia (LFA-l ⁇ , ⁇ L Integrin chain); CDl Ib ( ⁇ M Integrin chain, CR3, MoI, C3niR, Mac- 1); CDl Ic ( ⁇ X Integrin, P150, 95, AXb2); CDwl7 (Lactosylceramide, LacCer); CD18 (Integrin ⁇ 2, CDl Ia, b, c ⁇ -subunit); CD 19 (B4); CD20 (Bl, Bp35); CD21 (CR2, EBV-R, C3dR); CD22 (BL-CAM, Lyb8, Siglec-2); CD23 (FceRII, B6,
  • B cell targeting can be accomplished by any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on B cells upon activation (i.e., activated B cell marker).
  • entity e.g., protein, lipid, carbohydrate, small molecule, etc.
  • Exemplary activated B cell markers include, but are not limited to, CDIa (R4, T6, HTA-I); CDIb (Rl); CD15s (Sialyl Lewis X); CD15u (3 1 sulpho Lewis X); CD15su (6 sulpho-sialyl Lewis X); CD30 (Ber-H2, Ki-I); CD69 (AIM, EA 1, MLR3, gp34/28, VEA); CD70 (Ki-24, CD27 ligand); CD80 (B7, B7-1, BBl); CD86 (B7-2/B70); CD97 (BLKDD/F12); CD 125 (IL-5R ⁇ ); CD 126 (IL-6R ⁇ ); CD 138 (Syndecan-1, Heparan sulfate proteoglycan); CD 152 (CTLA-4); CD252 (OX40L, TNF(ligand) superfamily, member 4); CD253 (TRAIL, TNF(ligand) superfamily, member 10); CD
  • B cell antigen means any antigen that naturally is or could be engineered to be recognized by a B cell, and triggers (naturally or being engineered as known in the art) an immune response in a B cell (e.g., an antigen that is specifically recognized by a B cell receptor on a B cell).
  • an antigen that is a T cell antigen is also a B cell antigen.
  • the T cell antigen is not also a B cell antigen.
  • B cell antigens include, but are not limited to proteins, peptides, small molecules, and carbohydrates.
  • the B cell antigen is a non-protein antigen (i.e., not a protein or peptide antigen).
  • the B cell antigen is a carbohydrate associated with an infectious agent. In some embodiments, the B cell antigen is a glycoprotein or glycopeptide associated with an infectious agent.
  • the infectious agent can be a bacterium, virus, fungus, protozoan, parasite or prion.
  • the B cell antigen is a poorly immunogenic antigen. In some embodiments, the B cell antigen is an abused substance or a portion thereof. In some embodiments, the B cell antigen is an addictive substance or a portion thereof. Addictive substances include, but are not limited to, nicotine, a narcotic, a cough suppressant, a tranquilizer, and a sedative.
  • the B cell antigen is a toxin, such as a toxin from a chemical weapon or natural sources, or a pollutant.
  • the B cell antigen may also be a hazardous environmental agent.
  • the B cell antigen is an alloantigen, an allergen, a contact sensitizer, a degenerative disease antigen, a hapten, an infectious disease antigen, a cancer antigen, an atopic disease antigen, an addictive substance, a xenoantigen, or a metabolic disease enzyme or enzymatic product thereof.
  • Biodegradable polymer means a polymer that degrades over time when introduced into the body of a subject.
  • Biodegradable polymers include but are not limited to, polyesters, polycarbonates, polyketals, or polyamides. Such polymers may comprise poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone.
  • the biodegradable polymer comprises a block-co-polymer of a polyether, such as poly(ethylene glycol), and a polyester, polycarbonate, or polyamide, or other biodegradable polymer.
  • the biodegradable polymer comprises a block-co-polymer of poly(ethylene glycol) and poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone.
  • the biodegradable polymer does not comprise a polyether, such as poly(ethylene glycol), or consist solely of the polyether.
  • the biodegradable polymer in embodiments, have a weight average molecular weight ranging from about 800 to about 50,000 Daltons, as determined using gel permeation chromatography.
  • the weight average molecular weight is from about 800 Daltons to about 10,000 Daltons, preferably from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In other embodiments, the weight average molecular weight is from 1000 Daltons to 10,000 Daltons, as determined by gel permeation chromatography.
  • the biodegradable polymer does not comprise polyketal or a unit thereof.
  • "Couple” or “Coupled” or “Couples” (and the like) means attached to a polymer or unit thereof or attached to or contained within the synthetic nanocarrier.
  • the covalent coupling is mediated by one or more linkers. In some embodiments, the coupling is non-covalent.
  • the non-covalent coupling is mediated by charge interactions, affinity interactions, metal coordination, physical adsorption, hostguest interactions, hydrophobic interactions, TT stacking interactions, hydrogen bonding interactions, van der Waals interactions, magnetic interactions, electrostatic interactions, dipole-dipole interactions, and/or combinations thereof.
  • the coupling may arise in the context of encapsulation within the synthetic nanocarriers, using conventional techniques. Any of the aforementioned couplings may be arranged to be on a surface or within an inventive synthetic nanocarrier.
  • Dosage form means a compound, conjugate, synthetic nanocarrier, or composition provided herein in a medium, carrier, vehicle, or device suitable for administration to a subject.
  • Encapsulate means to enclose within a synthetic nanocarrier, preferably enclose completely within a synthetic nanocarrier. Most or all of a substance that is encapsulated is not exposed to the local environment external to the synthetic nanocarrier. Encapsulation is distinct from absorbtion, which places most or all of a substance on a surface of a synthetic nanocarrier, and leaves the substance exposed to the local environment external to the synthetic nanocarrier. In embodiments, the immunomodulatory agent or B cell and/or T cell antigen is encapsulated within the synthetic nanocarrier.
  • Immunomodulatory agent means an agent that modulates an immune response.
  • Modulate refers to inducing, enhancing, stimulating, or directing an immune response.
  • Such agents include immunostimulatory agents that stimulate (or boost) an immune response to an antigen but is not an antigen or derived from an antigen.
  • the immunomodulatory agent is on the surface of the synthetic nanocarrier and/or is incorporated within the synthetic nanocarrier.
  • the immunomodulatory agent is coupled to the synthetic nanocarrier via the polymer or unit thereof of the compounds or conjugates provided.
  • all of the immunomodulatory agents of a synthetic nanocarrier are identical to one another.
  • a synthetic nanocarrier comprises a number of different types of immunomodulatory agents.
  • a synthetic nanocarrier comprises multiple individual immunomodulatory agents, all of which are identical to one another.
  • a synthetic nanocarrier comprises exactly one type of immunomodulatory agent.
  • a synthetic nanocarrier comprises exactly two distinct types of immunomodulatory agents.
  • a synthetic nanocarrier comprises greater than two distinct types of immunomodulatory agents.
  • “Maximum dimension of a synthetic nanocarrier” means the largest dimension of a nanocarrier measured along any axis of the synthetic nanocarrier.
  • “Minimum dimension of a synthetic nanocarrier” means the smallest dimension of a synthetic nanocarrier measured along any axis of the synthetic nanocarrier. For example, for a spheroidal synthetic nanocarrier, the maximum and minimum dimension of a synthetic nanocarrier would be substantially identical, and would be the size of its diameter. Similarly, for a cubic synthetic nanocarrier, the minimum dimension of a synthetic nanocarrier would be the smallest of its height, width or length, while the maximum dimension of a synthetic nanocarrier would be the largest of its height, width or length.
  • a minimum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is greater than 100 nm.
  • a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is equal to or less than 5 ⁇ m.
  • a minimum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is equal to or greater than 110 nm, more preferably equal to or greater than 120 nm, more preferably equal to or greater than 130 nm, and more preferably still equal to or greater than 150 nm.
  • a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is equal to or less than 3 ⁇ m, more preferably equal to or less than 2 ⁇ m, more preferably equal to or less than 1 ⁇ m, more preferably equal to or less than 800 nm, more preferably equal to or less than 600 nm, and more preferably still equal to or less than 500 nm.
  • a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is equal to or greater than lOOnm, more preferably equal to or greater than 120 nm, more preferably equal to or greater than 130 nm, more preferably equal to or greater than 140 nm, and more preferably still equal to or greater than 150 nm.
  • Measurement of synthetic nanocarrier sizes is obtained by suspending the synthetic nanocarriers in a liquid (usually aqueous) media and using dynamic light scattering (e.g. using a Brookhaven ZetaPALS instrument).
  • “Pharmaceutically acceptable excipient” means a pharmacologically inactive substance added to an inventive compound, conjugate, synthetic nanocarrier or composition to further facilitate its administration.
  • pharmaceutically acceptable excipients include calcium carbonate, calcium phosphate, various diluents, various sugars and types of starch, cellulose derivatives, gelatin, vegetable oils, and polyethylene glycols.
  • Release Rate means the rate that an entrapped immunomodulatory agent flows from a composition, such as a synthetic nanocarrier, into a surrounding media in an in vitro release test.
  • the synthetic nanocarrier is prepared for the release testing by placing into the appropriate in vitro release media. This is generally done by exchanging the buffer after centrifugation to pellet the synthetic nanocarrier and reconstitution of the synthetic nanocarriers using a mild condition.
  • the assay is started by placing the sample at 37 0 C in an appropriate temperature-controlled apparatus. A sample is removed at various time points.
  • the synthetic nanocarriers are separated from the release media by centrifugation to pellet the synthetic nanocarriers.
  • the release media is assayed for the immunomodulatory agent that has dispersed from the synthetic nanocarriers.
  • the immunomodulatory agent is measured using HPLC to determine the content and quality of the immunomodulatory agent.
  • the pellet containing the remaining entrapped immunomodulatory agent is dissolved in solvents or hydrolyzed by base to free the entrapped immunomodulatory agent from the synthetic nanocarriers.
  • the pellet-containing immunomodulatory agent is then also measured by HPLC to determine the content and quality of the immunomodulatory agent that has not been released at a given time point.
  • Subject means an animal, including mammals such as humans and primates; avians; domestic household or farm animals such as cats, dogs, sheep, goats, cattle, horses and pigs; laboratory animals such as mice, rats and guinea pigs; fish; and the like.
  • Synthetic nanocarrier(s) means a discrete object that is not found in nature, and that possesses at least one dimension that is less than or equal to 5 microns in size. Albumin nanoparticles are expressly included as synthetic nanocarriers.
  • Synthetic nanocarriers include the compounds and compositions provided herein and, therefore, can be polymeric nanoparticles.
  • synthetic nanocarriers can comprise one or more polymeric matrices.
  • the synthetic nanocarriers can also include other nanomaterials and may be, for example, lipid-polymer nanoparticles.
  • a polymeric matrix can be surrounded by a coating layer (e.g., liposome, lipid monolayer, micelle, etc.).
  • the synthetic nanocarrier is not a micelle.
  • a synthetic nanocarrier may comprise a core comprising a polymeric matrix surrounded by a lipid layer (e.g., lipid bilayer, lipid monolayer, etc.).
  • the various elements of the synthetic nanocarriers can be coupled with the polymeric matrix.
  • the synthetic nanocarriers may comprise one or more lipids.
  • a synthetic nanocarrier may comprise a liposome.
  • a synthetic nanocarrier may comprise a lipid bilayer.
  • a synthetic nanocarrier may comprise a lipid monolayer.
  • a synthetic nanocarrier may comprise a micelle.
  • a synthetic nanocarrier may comprise a non- polymeric core (e.g., metal particle, quantum dot, ceramic particle, bone particle, viral particle, proteins, nucleic acids, carbohydrates, etc.) surrounded by a lipid layer (e.g., lipid bilayer, lipid monolayer, etc.).
  • the synthetic nanocarriers may comprise lipid-based nanoparticles, metallic nanoparticles, surfactant-based emulsions, dendrimers, buckyballs, nanowires, virus-like particles, peptide or protein-based particles (such as albumin nanoparticles).
  • Synthetic nanocarriers may be a variety of different shapes, including but not limited to spheroidal, cubic, pyramidal, oblong, cylindrical, toroidal, and the like.
  • Synthetic nanocarriers according to the invention comprise one or more surfaces.
  • Exemplary synthetic nanocarriers that can be adapted for use in the practice of the present invention comprise: (1) the biodegradable nanoparticles disclosed in U.S.
  • Patent 5,543,158 to Gref et al. (2) the polymeric nanoparticles of Published U.S. Patent Application 20060002852 to Saltzman et al., (3) the lithographically constructed nanoparticles of Published U.S. Patent Application 20090028910 to DeSimone et al., (4) the disclosure of WO 2009/051837 to von Andrian et al., or (5) the nanoparticles disclosed in Published U.S. Patent Application 2008/0145441 to Penades et al.
  • Synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface with hydroxyl groups that activate complement or alternatively comprise a surface that consists essentially of moieties that are not hydroxyl groups that activate complement.
  • synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface that substantially activates complement or alternatively comprise a surface that consists essentially of moieties that do not substantially activate complement.
  • synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface that activates complement or alternatively comprise a surface that consists essentially of moieties that do not activate complement.
  • synthetic nanocarriers may possess an aspect ratio greater than 1 :1, 1 :1.2, 1 :1.5, 1 :2, 1 :3, 1 :5, 1 :7, or greater than 1 :10.
  • synthetic nanocarriers are spheres or spheroids. In some embodiments, synthetic nanocarriers are flat or plate-shaped. In some embodiments, synthetic nanocarriers are cubes or cubic. In some embodiments, synthetic nanocarriers are ovals or ellipses. In some embodiments, synthetic nanocarriers are cylinders, cones, or pyramids.
  • each synthetic nanocarrier has similar properties. For example, at least 80%, at least 90%, or at least 95% of the synthetic nanocarriers may have a minimum dimension or maximum dimension that falls within 5%, 10%, or 20% of the average diameter or average dimension.
  • a population of synthetic nanocarriers may be heterogeneous with respect to size, shape, and/or composition.
  • Synthetic nanocarriers can be solid or hollow and can comprise one or more layers. In some embodiments, each layer has a unique composition and unique properties relative to the other layer(s).
  • synthetic nanocarriers may have a core/shell structure, wherein the core is one layer (e.g., a polymeric core) and the shell is a second layer (e.g., a lipid bilayer or monolayer).
  • the core is one layer (e.g., a polymeric core) and the shell is a second layer (e.g., a lipid bilayer or monolayer).
  • Synthetic nanocarriers may comprise a plurality of different layers.
  • T cell antigen means any antigen that is recognized by and triggers an immune response in a T cell (e.g., an antigen that is specifically recognized by a T cell receptor on a T cell or an NKT cell via presentation of the antigen or portion thereof bound to a Class I or Class II major histocompatability complex molecule (MHC), or bound to a CDl complex).
  • an antigen that is a T cell antigen is also a B cell antigen.
  • the T cell antigen is not also a B cell antigen.
  • T cell antigens generally are proteins or peptides.
  • T cell antigens may be an antigen that stimulates a CD8+ T cell response, a CD4+ T cell response, or both. The T cell antigens, therefore, in some embodiments can effectively stimulate both types of responses.
  • the T cell antigen is a T-helper antigen, which is a T cell antigen that can generate an augmented response to an unrelated B cell antigen through stimulation of T cell help.
  • a T-helper antigen may comprise one or more peptides derived from tetanus toxoid, Epstein-Barr virus, influenza virus, respiratory syncytial virus, measles virus, mumps virus, rubella virus, cytomegalovirus, adenovirus, diphtheria toxoid, or a PADRE peptide.
  • a T-helper antigen may comprise one or more lipids, or glycolipids, including but not limited to: ⁇ - galactosylceramide ( ⁇ -GalCer), ⁇ -linked glycosphingolipids (from Sphingomonas spp.), galactosyl diacylglycerols (from Borrelia burgdorferi), lypophosphoglycan (from Leishmania donovan ⁇ ), and phosphatidylinositol tetramannoside (PIM4) (from Mycobacterium leprae).
  • ⁇ -galactosylceramide ⁇ -GalCer
  • ⁇ -linked glycosphingolipids from Sphingomonas spp.
  • galactosyl diacylglycerols from Borrelia burgdorferi
  • lypophosphoglycan from Leishmania donovan ⁇
  • PIM4 phosphatidylinositol tetramanno
  • CD4+ T-cell antigens may be derivatives of a CD4+ T-cell antigen that is obtained from a source, such as a natural source.
  • CD4+ T-cell antigen sequences such as those peptides that bind to MHC II, may have at least 70%, 80%, 90%, or 95% identity to the antigen obtained from the source.
  • the T cell antigen preferably a T-helper antigen, may be coupled to, or uncoupled from, a synthetic nanocarrier.
  • Unit thereof refers to a monomeric unit of a polymer, the polymer generally being made up of a series of linked monomers.
  • Vaccine means a composition of matter that improves the immune response to a particular pathogen or disease.
  • a vaccine typically contains factors that stimulate a subject's immune system to recognize a specific antigen as foreign and eliminate it from the subject's body.
  • a vaccine also establishes an immunologic 'memory' so the antigen will be quickly recognized and responded to if a person is re-challenged.
  • Vaccines can be prophylactic (for example to prevent future infection by any pathogen), or therapeutic (for example a vaccine against a tumor specific antigen for the treatment of cancer).
  • Vaccines according to the invention may comprise one or more of the compounds, conjugates, synthetic nanocarriers, or compositions provided herein.
  • the immunomodulatory agent and polymers or unit thereof are coupled covalently via an amide or ester bond.
  • these conjugates form part of a synthetic nanocarrier.
  • a polymer such as polylactide (PLA) or polylactide-co-glycolide (PLGA)
  • PLA polylactide
  • PLGA polylactide-co-glycolide
  • an immunostimulatory agent such as resiquimod (also known as R848)
  • solvents that may be suitable for use in the invention include, but are not limited to, /7-cresol, toluene, xylene, mesitylene, diethyl ether, glycol, petroleum ether, hexane, cyclohexane, pentane, dichloromethane (or methylene chloride), chloroform, dioxane, tetrahydrofuran (THF), dimethyl sulfoxide (DMSO), dimethylformamide (DMF), ethyl acetate (EtOAc), triethylamine, acetonitrile, methyl-/-butyl ether (MTBE), N- methylpyrrolidone (NMP), dimethylacetamide (DMAC), isopropyl, a solvent or a mixture of solvents.
  • solvents that may be suitable for use in the invention include, but are not limited to, /7-cresol, toluene, xylene, mesitylene, dieth
  • a reaction or any step of the methods provided may be carried out at any suitable temperature. In some cases, a reaction or any step of the methods provided is carried out at about room temperature (e.g., about 25 0 C, about 20 0 C, between about 20 0 C and about 25 0 C, or the like).
  • room temperature e.g., about 25 0 C, about 20 0 C, between about 20 0 C and about 25 0 C, or the like.
  • the reaction or any step of the methods provided may be carried out at a temperature below or above room temperature, for example, at about -20 0 C, at about -10 0 C, at about 0 0 C, at about 10 0 C, at about 30 0 C, about 40 0 C, about 50 0 C, about 60 0 C, about 70 0 C, about 80 0 C, about 90 0 C, about 100 0 C , about 120 0 C, about 140 0 C, about 150 0 C or greater.
  • the reaction or any step of the methods provided is conducted at temperatures between 0 0 C and 120 0 C.
  • reaction or any step of the methods provided may be carried out at more than one temperature (e.g., reactants added at a first temperature and the reaction mixture agitated at a second wherein the transition from a first temperature to a second temperature may be gradual or rapid).
  • the reaction or any step of the methods provided may be allowed to proceed for any suitable period of time. In some cases, the reaction or any step of the methods provided is allowed to proceed for about 10 minutes, about 20 minutes, about 30 minutes, about 40 minutes, about 50 minutes, about 1 hour, about 2 hours, about 4 hours, about 8 hours, about 12 hours, about 16 hours, about 24 hours, about 2 days, about 3 days, about 4 days, or more. In some cases, aliquots of the reaction mixture may be removed and analyzed at an intermediate time to determine the progress of the reaction or any step of the methods provided. In some embodiments, a reaction or any step of the methods provided may be carried out under an inert atmosphere in anhydrous conditions (e.g., under an atmosphere of nitrogen or argon, anhydrous solvents, etc.)
  • anhydrous conditions e.g., under an atmosphere of nitrogen or argon, anhydrous solvents, etc.
  • reaction products and/or intermediates may be isolated (e.g., via distillation, column chromatography, extraction, precipitation, etc.) and/or analyzed (e.g., gas liquid chromatography, high performance liquid chromatography, nuclear magnetic resonance spectroscopy, etc.) using commonly known techniques.
  • a conjugate or synthetic nanocarrier that includes the conjugated may be analyzed to determine the loading of immunomodulatory agent, for example, using reverse phase HPLC.
  • the polymers may have any suitable molecular weight.
  • the polymers may have a low or high molecular weight.
  • Non-limiting molecular weight values include 100 Da, 200 Da, 300 Da, 500 Da, 750 Da, 1000 Da, 2000 Da, 3000 Da, 4000 Da, 5000 Da, 6000 Da, 7000 Da, 8000 Da, 9000 Da, 10,000 Da, or greater.
  • the polymers have a weight average molecular weight of about 800 Da to about 10,000 Da.
  • the molecular weight of a polymer may be determined using gel permeation chromatography.
  • a polymer e.g., PLA, PLGA
  • a reactive acylating agent such as an acyl halide, acylimidazole, active ester, etc. using an activating reagent commonly used in amide synthesis.
  • the resulting activated polymer or unit thereof e.g., PLA, PLGA
  • an immunomodulatory agent e.g., R848
  • a base e.g., PLA-R848
  • Activating reagents that can be used to convert polymers or units thereof, such as PLA or PLGA, to an activated acylating form include, but are not limited to cyanuric fluoride, N,N-tetramethylfluoroformamidinium hexafluorophosphate (TFFH); Acylimidazoles, such as carbonyl diimidazole (CDI), N,N'-carbonylbis(3- methylimidazolium) triflate (CBMIT); and Active esters, such as N-hydroxylsuccinimide (NHS or HOSu) in the presence of a carbodiimide such as N,N'-dicyclohexylcarbodiimide (DCC), N-ethyl-N'-(3-(dimethylamino)propyl)carbodiimide hydrochloride (EDC) or N, N 1 - diisopropylcarbodiimide (DIC); N,N'-dis
  • the activated polymer or unit thereof may be isolated (e.g., via precipitation, extraction, etc.) and/or stored under suitable conditions (e.g., at low temperature, under argon) following activation, or may be used immediately.
  • the activated polymer or unit thereof may be reacted with an immunostimulatory agent under any suitable conditions. In some cases, the reaction is carried out in the presence of a base and/or catalyst.
  • bases/catalysts include diisopropylethylamine (DIPEA) and 4- dimethylaminopyridine (DMAP).
  • a polymer or unit thereof e.g., PLA, PLGA having any suitable molecular weight
  • an immunomodulatory agent e.g., R848
  • an activating or coupling reagent which converts the polymer or unit thereof (e.g., PLA, PLGA) to a reactive acylating agent in situ, to give the desired conjugate (e.g., PLA-R848, PLGA-R848).
  • Coupling or activating agents include but are not limited to: activating agents used in the presence of an carbodiimide such as EDC or DCC or DIC, such as 1 - Hydroxybenzotriazole (HOBt), 1 -Hydroxy-7-azabenzotriazole (HOAt), 3,4-Dihydro-3- hydroxy-4-oxo-l,2,3-benzotriazine (HO-Dhbt), N-Hydroxysuccinimide (NHS or HOSu), Pentafluorophenol (PFP);
  • Immunomodulatory agents can also be coupled to polymers or units thereof that are terminated in a hydroxyl group.
  • polymers or units thereof include polyethylene glycol, polylactide, polylactide-co-glycolide, polycaprolactone, and other like polyesters, or units thereof.
  • the reaction proceeds as follows where an imide of the general structure (IV) will react with the terminal hydroxyl of the aforementioned polymers or units thereof using a catalyst used in lactone ring opening polymerizations.
  • the resulting reaction product (II) links the amide of the agent to the polymer or unit thereof via an ester bond.
  • the compounds of formula (IV) and (II) are as follows:
  • Rj H, OH, SH, NH 2 , or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino
  • R 2 H, alkyl, or substituted alkyl
  • Y N or C
  • R 4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R 3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected
  • R 5 is a polymer or unit thereof
  • Catalysts include, but are not limited to, phosphazine bases, 1,8-diazabicycloundec- 7-ene (DBU), 1 ⁇ -triazabicyclodecene (TBD), and N-methyl-l,4,7-triazabicyclodecene (MTDB).
  • DBU 1,8-diazabicycloundec- 7-ene
  • TBD 1 ⁇ -triazabicyclodecene
  • MTDB N-methyl-l,4,7-triazabicyclodecene
  • suitable solvents include methylene chloride, chloroform, and THF.
  • R 5 -OH contains two hydroxyl groups (e.g., a diol, HO-R 5 -OH), each of which are functionalized by reaction with an imide associated with R848.
  • HO-R 5 -OH is a poly-diol such as poly(hexamethyl carbonate) diol or polycaprolactone diol.
  • the reaction may be carried out as follows:
  • suitable polymers include polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co- poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran).
  • one of the diol groups may be protected with a protecting group (e.g., t-butyloxycarbonyl), thus the poly-diol would be a compound of formula HO-R 5 -OP, wherein P is a protecting group.
  • the protecting group may be removed and the second diol group may be reacted with any suitable reagent (e.g., PLGA, PLA).
  • a conjugate (e.g., R848-PLA) can be formed via a one-pot ring-opening polymerization of an immunomodulatory agent (e.g., R848) with a polymer or unit thereof (e.g., D/L-lactide) in the presence of a catalyst, for example, as shown in the following scheme:
  • an immunomodulatory agent e.g., R848
  • a polymer or unit thereof e.g., D/L-lactide
  • the immunomodulatory agent and the polymer or unit thereof may be combined into a single reaction mixture comprising a catalyst.
  • the reaction may proceed at a suitable temperature (e.g., at about 150 0 C) and the resulting conjugate may be isolated using commonly known techniques.
  • suitable catalysts include DMAP and tin ethylhexanoate.
  • a conjugate can be formed via two-step ring opening polymerization of an immunomodulatory agent (e.g., R848) with one or more polymers or units thereof (e.g., D/L-lactide and glycolide) in the presence of a catalyst, for example, as shown in the following scheme:
  • an immunomodulatory agent e.g., R848
  • polymers or units thereof e.g., D/L-lactide and glycolide
  • the polymers or units thereof may be first combined, and in some cases, heated (e.g., to 135 0 C) to form a solution.
  • the immunomodulatory agent may be added to a solution comprising the polymers or units thereof, followed by addition of a catalyst (e.g., tin ethylhexanoate).
  • a catalyst e.g., tin ethylhexanoate
  • the resulting conjugate may be isolated using commonly known techniques.
  • suitable catalysts include DMAP and tin ethylhexanoate.
  • a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be covalently associated with a polymeric matrix. In some embodiments, covalent association is mediated by a linker. In some embodiments, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be noncovalently associated with a polymeric matrix. For example, in some embodiments, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be encapsulated within, surrounded by, and/or dispersed throughout a polymeric matrix. Alternatively or additionally, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be associated with a polymeric matrix by hydrophobic interactions, charge interactions, van der Waals forces, etc.
  • a polymeric matrix comprises one or more polymers.
  • Polymers may be natural or unnatural (synthetic) polymers.
  • Polymers may be homopolymers or copolymers comprising two or more monomers. In terms of sequence, copolymers may be random, block, or comprise a combination of random and block sequences.
  • polymers in accordance with the present invention are organic polymers.
  • polymers suitable for use in the present invention include, but are not limited to polyethylenes, polycarbonates (e.g., poly(l,3-dioxan-2one)), polyanhydrides (e.g., poly(sebacic anhydride)), polyhydroxyacids (e.g., poly( ⁇ -hydroxyalkanoate)), polypropylfumerates, polycaprolactones, polyamides (e.g., polycaprolactam), polyacetals, polyethers, polyesters (e.g., polylactide, polyglycolide), poly(orthoesters), polycyanoacrylates, polyvinyl alcohols, polyurethanes, polyphosphazenes, polyacrylates, polymethacrylates, polyureas, polystyrenes, polyamines, and polysaccharides (e.g., chitosan).
  • polyethylenes e.g., poly(l,3-dioxan-2one)
  • polymers in accordance with the present invention include polymers which have been approved for use in humans by the U.S. Food and Drug Administration (FDA) under 21 C.F.R. ⁇ 177.2600, including but not limited to polyesters (e.g., polylactic acid, poly(lactic-co-glycolic acid), polycaprolactone, polyvalerolactone, poly(l,3-dioxan-2one)); polyanhydrides (e.g., poly(sebacic anhydride)); polyethers (e.g., polyethylene glycol); polyurethanes; polymethacrylates; polyacrylates; and polycyanoacrylates.
  • FDA U.S. Food and Drug Administration
  • polymers can be hydrophilic.
  • polymers may comprise anionic groups (e.g., phosphate group, sulphate group, carboxylate group); cationic groups (e.g., quaternary amine group); or polar groups (e.g., hydroxyl group, thiol group, amine group).
  • a synthetic nanocarrier comprising a hydrophilic polymeric matrix generates a hydrophilic environment within the synthetic nanocarrier.
  • polymers can be hydrophobic.
  • a synthetic nanocarrier comprising a hydrophobic polymeric matrix generates a hydrophobic environment within the synthetic nanocarrier. Selection of the hydrophilicity or hydrophobicity of the polymer may have an impact on the nature of materials that are incorporated (e.g., coupled) within the synthetic nanocarrier.
  • polymers may be modified with one or more moieties and/or functional groups.
  • moieties or functional groups can be used in accordance with the present invention.
  • polymers may be modified with PEG, with a carbohydrate, and/or with acyclic polyacetals derived from polysaccharides (Papisov, 2001, ACS Symposium Series, 786:301).
  • polymers may be modified with a lipid or fatty acid group.
  • a fatty acid group may be one or more of butyric, caproic, caprylic, capric, lauric, myristic, palmitic, stearic, arachidic, behenic, or lignoceric acid.
  • a fatty acid group may be one or more of palmitoleic, oleic, vaccenic, linoleic, alpha-linoleic, gamma-linoleic, arachidonic, gadoleic, arachidonic, eicosapentaenoic, docosahexaenoic, or erucic acid.
  • polymers may be polyesters, including copolymers comprising lactic acid and glycolic acid units, such as poly(lactic acid-co-glycolic acid) and poly(lactide-co-glycolide), collectively referred to herein as "PLGA”; and homopolymers comprising glycolic acid units, referred to herein as "PGA,” and lactic acid units, such as poly-L-lactic acid, poly-D-lactic acid, poly-D,L-lactic acid, poly-L-lactide, poly-D-lactide, and poly-D,L-lactide, collectively referred to herein as "PLA.”
  • exemplary polyesters include, for example, polyhydroxyacids; PEG copolymers and copolymers of lactide and glycolide (e.g., PLA-PEG copolymers, PGA-PEG copolymers, PLGA-PEG copolymers, and derivatives thereof.
  • polyesters include, for example, polyanhydrides, poly(ortho ester), poly(ortho ester)-PEG copolymers, poly(caprolactone), poly(caprolactone)-PEG copolymers, polylysine, polylysine-PEG copolymers, poly(ethyleneimine), poly(ethylene imine)-PEG copolymers, poly(L-lactide- co-L-lysine), poly(serine ester), poly(4-hydroxy-L-proline ester), poly[ ⁇ -(4-aminobutyl)-L- glycolic acid], and derivatives thereof.
  • a polymer may be PLGA.
  • PLGA is a biocompatible and biodegradable co-polymer of lactic acid and glycolic acid, and various forms of PLGA are characterized by the ratio of lactic acid:glycolic acid.
  • Lactic acid can be L-lactic acid, D- lactic acid, or D,L-lactic acid.
  • the degradation rate of PLGA can be adjusted by altering the lactic acid:glycolic acid ratio.
  • PLGA to be used in accordance with the present invention is characterized by a lactic acid:glycolic acid ratio of approximately 85:15, approximately 75:25, approximately 60:40, approximately 50:50, approximately 40:60, approximately 25:75, or approximately 15:85.
  • polymers may be one or more acrylic polymers.
  • acrylic polymers include, for example, acrylic acid and methacrylic acid copolymers, methyl methacrylate copolymers, ethoxyethyl methacrylates, cyanoethyl methacrylate, aminoalkyl methacrylate copolymer, poly(acrylic acid), poly(methacrylic acid), methacrylic acid alkylamide copolymer, poly(methyl methacrylate), poly(methacrylic acid anhydride), methyl methacrylate, polymethacrylate, poly(methyl methacrylate) copolymer, polyacrylamide, aminoalkyl methacrylate copolymer, glycidyl methacrylate copolymers, polycyanoacrylates, and combinations comprising one or more of the foregoing polymers.
  • the acrylic polymer may comprise fully-polymerized copolymers of acrylic and methacrylic acid esters with a low content of quaternary ammoni
  • polymers can be cationic polymers.
  • cationic polymers are able to condense and/or protect negatively charged strands of nucleic acids (e.g., DNA, RNA, or derivatives thereof).
  • Amine-containing polymers such as poly(lysine) (Zauner et al., 1998, Adv. Drug Del. Rev., 30:97; and Kabanov et al., 1995, Bioconjugate Chem., 6:7), polyethylene imine) (PEI; Boussif et al., 1995, Proc. Natl. Acad.
  • polymers can be degradable polyesters bearing cationic side chains (Putnam et al., 1999, Macromolecules, 32:3658; Barrera et al., 1993, J. Am. Chem. Soc, 115:1 1010; Kwon et al., 1989, Macromolecules, 22:3250; Lim et al., 1999, J. Am. Chem. Soc, 121 :5633; and Zhou et al., 1990, Macromolecules, 23:3399).
  • polyesters include poly(L-lactide-co-L-lysine) (Barrera et al., 1993, J. Am. Chem.
  • polymers can be linear or branched polymers. In some embodiments, polymers can be dendrimers. In some embodiments, polymers can be substantially cross-linked to one another. In some embodiments, polymers can be substantially free of cross-links. In some embodiments, polymers can be used in accordance with the present invention without undergoing a cross-linking step. It is further to be understood that inventive compounds and synthetic nanocarriers may comprise block copolymers, graft copolymers, blends, mixtures, and/or adducts of any of the foregoing and other polymers. Those skilled in the art will recognize that the polymers listed herein represent an exemplary, not comprehensive, list of polymers that can be of use in accordance with the present invention.
  • synthetic nanocarriers may comprise metal particles, quantum dots, ceramic particles, etc.
  • synthetic nanocarriers may optionally comprise one or more amphiphilic entities.
  • an amphiphilic entity can promote the production of synthetic nanocarriers with increased stability, improved uniformity, or increased viscosity.
  • amphiphilic entities can be associated with the interior surface of a lipid membrane (e.g., lipid bilayer, lipid monolayer, etc.). Many amphiphilic entities known in the art are suitable for use in making synthetic nanocarriers in accordance with the present invention.
  • amphiphilic entities include, but are not limited to, phosphoglycerides; phosphatidylcholines; dipalmitoyl phosphatidylcholine (DPPC); dioleylphosphatidyl ethanolamine (DOPE); dioleyloxypropyltriethylammonium (DOTMA); dioleoylphosphatidylcholine; cholesterol; cholesterol ester; diacylglycerol; diacylglycerolsuccinate; diphosphatidyl glycerol (DPPG); hexanedecanol; fatty alcohols such as polyethylene glycol (PEG); polyoxyethylene-9-lauryl ether; a surface active fatty acid, such as palmitic acid or oleic acid; fatty acids; fatty acid monoglycerides; fatty acid diglycerides; fatty acid amides; sorbitan trioleate (Span®85) glycocholate; sorbitan monolaurate (Span®20); polysorbate 20
  • amphiphilic entity component may be a mixture of different amphiphilic entities. Those skilled in the art will recognize that this is an exemplary, not comprehensive, list of substances with surfactant activity. Any amphiphilic entity may be used in the production of synthetic nanocarriers to be used in accordance with the present invention.
  • synthetic nanocarriers may optionally comprise one or more carbohydrates.
  • Carbohydrates may be natural or synthetic.
  • a carbohydrate may be a derivatized natural carbohydrate.
  • a carbohydrate comprises monosaccharide or disaccharide, including but not limited to glucose, fructose, galactose, ribose, lactose, sucrose, maltose, trehalose, cellbiose, mannose, xylose, arabinose, glucoronic acid, galactoronic acid, mannuronic acid, glucosamine, galatosamine, and neuramic acid.
  • a carbohydrate is a polysaccharide, including but not limited to pullulan, cellulose, microcrystalline cellulose, hydroxypropyl methylcellulose (HPMC), hydroxycellulose (HC), methylcellulose (MC), dextran, cyclodextran, glycogen, starch, hydroxyethylstarch, carageenan, glycon, amylose, chitosan, N,O- carboxylmethylchitosan, algin and alginic acid, starch, chitin, heparin, konjac, glucommannan, pustulan, heparin, hyaluronic acid, curdlan, and xanthan.
  • the carbohydrate is a sugar alcohol, including but not limited to mannitol, sorbitol, xylitol, erythritol, maltitol, and lactitol.
  • Synthetic nanocarriers may be prepared using a wide variety of methods known in the art.
  • synthetic nanocarriers can be formed by methods as nanoprecipitation, flow focusing using fluidic channels, spray drying, single and double emulsion solvent evaporation, solvent extraction, phase separation, milling, microemulsion procedures, microfabrication, nanofabrication, sacrificial layers, simple and complex coacervation, and other methods well known to those of ordinary skill in the art.
  • aqueous and organic solvent syntheses for monodisperse semiconductor, conductive, magnetic, organic, and other nanomaterials have been described (Pellegrino et al., 2005, Small, 1 :48; Murray et al., 2000, Ann. Rev. Mat.
  • synthetic nanocarriers are prepared by a nanoprecipitation process or spray drying. Conditions used in preparing synthetic nanocarriers may be altered to yield particles of a desired size or property (e.g., hydrophobicity, hydrophilicity, external morphology, "stickiness," shape, etc.). The method of preparing the synthetic nanocarriers and the conditions (e.g., solvent, temperature, concentration, air flow rate, etc.) used may depend on the materials to be coupled to the synthetic nanocarriers and/or the composition of the polymer matrix.
  • Conditions used in preparing synthetic nanocarriers may be altered to yield particles of a desired size or property (e.g., hydrophobicity, hydrophilicity, external morphology, "stickiness," shape, etc.).
  • the method of preparing the synthetic nanocarriers and the conditions (e.g., solvent, temperature, concentration, air flow rate, etc.) used may depend on the materials to be coupled to the synthetic nanocarriers and/or the composition of the polymer matrix.
  • particles prepared by any of the above methods have a size range outside of the desired range, particles can be sized, for example, using a sieve.
  • Coupling can be achieved in a variety of different ways, and can be covalent or non- covalent. Such couplings may be arranged to be on a surface or within an inventive synthetic nanocarrier. Elements of the inventive synthetic nanocarriers (such as moieties of which an immunofeature surface is comprised, targeting moieties, polymeric matrices, and the like) may be directly coupled with one another, e.g., by one or more covalent bonds, or may be coupled by means of one or more linkers.
  • Additional methods of functionalizing synthetic nanocarriers may be adapted from Published US Patent Application 2006/0002852 to Saltzman et al., Published US Patent Application 2009/0028910 to DeSimone et al., or Published International Patent Application WO/2008/127532 Al to Murthy et al.
  • Linkers may be used to form amide linkages, ester linkages, disulfide linkages, etc.
  • Linkers may contain carbon atoms or heteroatoms (e.g., nitrogen, oxygen, sulfur, etc.).
  • a linker is an aliphatic or heteroaliphatic linker.
  • the linker is a polyalkyl linker.
  • the linker is a polyether linker.
  • the linker is a polyethylene linker.
  • the linker is a polyethylene glycol (PEG) linker.
  • the linker is a cleavable linker.
  • cleavable linkers include protease cleavable peptide linkers, nuclease sensitive nucleic acid linkers, lipase sensitive lipid linkers, glycosidase sensitive carbohydrate linkers, pH sensitive linkers, hypoxia sensitive linkers, photo-cleavable linkers, heat-labile linkers, enzyme cleavable linkers (e.g., esterase cleavable linker), ultrasound-sensitive linkers, x-ray cleavable linkers, etc.
  • the linker is not a cleavable linker.
  • a variety of methods can be used to couple a linker or other element of a synthetic nanocarrier with the synthetic nanocarrier.
  • General strategies include passive adsorption (e.g., via electrostatic interactions), multivalent chelation, high affinity non-covalent binding between members of a specific binding pair, covalent bond formation, etc. (Gao et al., 2005, Curr. Op. Biotechnol., 16:63).
  • click chemistry can be used to associate a material with a synthetic nanocarrier.
  • Non-covalent specific binding interactions can be employed.
  • a particle or a biomolecule can be functionalized with biotin with the other being functionalized with streptavidin. These two moieties specifically bind to each other noncovalently and with a high affinity, thereby associating the particle and the biomolecule.
  • Other specific binding pairs could be similarly used.
  • histidine-tagged biomolecules can be associated with particles conjugated to nickel-nitrolotriaceteic acid (Ni-NTA).
  • compositions of the invention can be made in any suitable manner, and the invention is in no way limited to compositions that can be produced using the methods described herein. Selection of an appropriate method may require attention to the properties of the particular moieties being associated.
  • compositions according to the invention comprise inventive compounds, conjugates, or synthetic nanocarriers, optionally, in combination with pharmaceutically acceptable excipients.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions are suspended in sterile saline solution for injection together with a preservative.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions are manufactured under sterile conditions or are terminally sterilized. This can ensure that resulting compositions are sterile and non-infectious, thus improving safety when compared to non-sterile compositions. This provides a valuable safety measure, especially when subjects receiving inventive compounds, conjugates, synthetic nanocarriers, or compositions have immune defects, are suffering from infection, and/or are susceptible to infection.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions may be lyophilized and stored in suspension or as lyophilized powder depending on the formulation strategy for extended periods without losing activity.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions may be administered by a variety of routes of administration, including but not limited to parenteral, subcutaneous, intramuscular, intradermal, oral, intranasal, transmucosal, rectal; ophthalmic, transdermal, transcutaneous or by a combination of these routes.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can be used to induce, enhance, stimulate, modulate, or direct an immune response.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can be used in the diagnosis, prophylaxis and/or treatment of conditions such as cancers, infectious diseases, metabolic diseases, degenerative diseases, inflammatory diseases, immunological diseases, or other disorders and/or conditions.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can also be used for the prophylaxis or treatment of an addiction, such as an addiction to nicotine or a narcotic.
  • inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can also be used for the prophylaxis and/or treatment of a condition resulting from the exposure to a toxin, hazardous substance, environmental toxin, or other harmful agent.
  • R848 dl-lactide R848-PLA R848 loading 3 mg/g
  • a mixture of R848 (0.2 mmol, 63 mg), D/L-lactide (40 mmol, 5.8 g), and 4- dimethylaminopyridine (DMAP) (50 mg, 0.4 mmol) in 2 mL of anhydrous toluene was heated slowly to 150 0 C (oil bath temperature) and maintained at this temperature for 18 h (after 3 hr, no R848 was left). The mixture was cooled to ambient temperature and the resulting mixture was quenched with water (50 mL) to precipitate out the resulting polymer, R848-PLA.
  • DMAP 4- dimethylaminopyridine
  • the polymer was then washed sequentially with 45 mL each of MeOH, iPrOH, and ethyl ether. The polymer was dried under vacuum at 30 0 C to give an off-white puffy solid (5.0 g). Polymeric structure was confirmed by 1 H NMR in CDCl 3 . A small sample of the polymer was treated with 2 N NaOH aq in THF/MeOH to determine the loading of R848 on the polymer by reverse phase HPLC. The loading of R848 is 3 mg per gram of polymer (0.3% loading - 27.5% of theory).
  • PLA-CO2H A solution of PLA-CO2H (average MW: 950, DPI: 1.32; 5.0 g, 5.26 mmol) and HBTU (4.0 g, 10.5 mmol) in EtOAc (120 mL) was stirred at room temperature under argon for 45 min. Compound R848 (1.65 g, 5.26 mmol) was added, followed by DIPEA (5.5 mL, 31.6 mmol). The mixture was stirred at room temperature for 6 h and then at 50-55 0 C for 15 h.
  • Example 8 Conjugation Of R848 To PCADK Via Imide Ring Opening
  • PCADK polyketal
  • PCADK is synthesized in a 50 mL two-necked flask, connected to a short-path distilling head.
  • 5.5 mg of re-crystallized p-toluenesulfonic acid (0.029 mmol, Aldrich, St. Louis, MO)
  • ethyl acetate a 30 mL benzene solution (kept at 100 0 C), which contains 1 ,4-cyclohexanedimethanol (12.98 g, 90.0 mmol, Aldrich).
  • the ethyl acetate is allowed to boil off, and distilled 2,2-dimethoxypropane (10.94 mL, 90.0 mmol, Aldrich) is added to the benzene solution, initiating the polymerization reaction. Additional doses of 2,2-dimethoxypropane (5 mL) and benzene (25 mL) are subsequently added to the reaction every hour for 6 hours via a metering funnel to compensate for 2,2-dimethoxypropane and benzene that is distilled off. After 8 hours, the reaction is stopped by addition of 500 ⁇ L of triethylamine. The polymer is isolated by precipitation in cold hexane (stored at -2O 0 C) followed by vacuum filtration.
  • the molecular weight of PCADK is determined by gel permeation chromatography (GPC) (Shimadzu, Kyoto, Japan) equipped with a UV detector. THF is used as the mobile phase at a flow rate of 1 ml/min. Polystyrene standards from Polymer Laboratories (Amherst, MA) are used to establish a molecular weight calibration curve. This compound is used to generate the PCADK particles in all subsequent experiments.
  • R848 may be conjugated to the terminal alcohol groups of the PCADK having molecular weight 6000 via imide ring opening, according to the step 2 shown below.
  • Step 2 Conjugation of PCADK to R848
  • step 2 the polymer from step 1 (12 g, 2.0 x 10 "3 moles) is dissolved in methylene chloride 100 mL, and the lactam of R848 (3.3 g, 8.0 x 10 "3 moles) is added. This slurry is stirred as l,5,7-triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.835 g, 6 X 10 '3 moles) is added in a single portion. After stirring at room temperature overnight, a clear solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 1 1.3 grams (81%) of polymer. A portion is hydrolyzed in acid and the R848 content is determined to be 9% by weight.
  • Imide ring opening is used to attach R854 to the terminal alcohol groups of poly- caprolactonediol of molecular weight 2000.
  • the polycaprolactone diol is purchased from Aldrich Chemical Company, Cat. #189421, and has the following structure:
  • the polycaprolactone diol-R854 conjugate has the following structure:
  • the polymer (5 g, 2.5 x 10 '3 moles) is dissolved in methylene chloride 25 mL and the lactam of R854 (2.4 g, 5.0 x 10 "3 moles) is added. This slurry is stirred as 1,5,7- triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 X 10 "3 moles) is added in a single portion. After stirring at room temperature for 15 minutes, a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 5.2 grams (70%) of polymer. A portion is hydrolyzed in acid and the R848 content is determined to be 18.5% by weight.
  • Imide ring opening is used to attach R848 to the terminal alcohol groups of poly- (hexamethylene carbonate)diol of molecular weight 2000.
  • the poly(hexamethylene carbonate) diol is purchased from Aldrich Chemical Company, Cat # 461164, and has the following structure:
  • the poly(hexamethylene carbonate) diol-R848 conjugate has the following structure:
  • the polymer (5 g, 2.5 x 10 moles) is dissolved in methylene chloride 25 mL and the lactam of R848 (2.06 g, 5.0 X 10 "3 moles) is added. This slurry is stirred as 1,5,7- triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 X 10 "3 moles) is added in a single portion. After stirring at room temperature overnight a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum.
  • Example 11 Polylactic Acid Conjugates Of An Imidazoquinoline Using A Tin Ethylhexanoate Catalyst
  • the reaction was stirred in an oil bath set at 120 °C until all of the lactide had dissolved and then tin ethylhexanoate (75 mg, 60 ⁇ L) was added via pipette. Heating was continued under argon for 16 hours. After cooling, water (20 mL) was added and stirring was continued for 30 minutes. The reaction was diluted with additional toluene (200 mL) and was then washed with water (200 mL). The toluene solution was then washed in turn with 10% sodium chloride solution containing 5% cone. Hydrochloric acid (200 mL) followed by saturated sodium bicarbonate (200 mL).
  • the reaction was stirred in an oil bath set at 120 °C until all of the lactide had dissolved and then tin ethylhexanoate (19 mg, 15 ⁇ L) was added via pipette. Heating was continued under argon for 16 hours. After cooling, the reaction was diluted with ether (200 mL) and the solution was washed with water (200 mL). The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give 880 mg. of crude polylactic acid-R-848 conjugate. The crude polymer was chromatographed on silica using 10% methanol in methylene chloride as eluent. The fractions containing the conjugate were pooled and evaporated to give the purified conjugate.
  • Example 13 Low Molecular Weight Polylactic Acid Co-Glycolic Acid Conjugates Of An Imidazoquinoline
  • the reaction was stirred in an oil bath set at 120°C until all of the R848, glycolide and lactide had dissolved and then tin ethylhexanoate (50 mg, 39 ⁇ L) was added via pipette. Heating was continued under argon for 16 hours. After cooling, the reaction was diluted with ethyl acetate (200 mL) and the solution was washed with water (200 mL). The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give crude PLGA-R-848 conjugate. The crude polymer was chromatographed on silica using 10% methanol in methylene chloride as eluent.
  • Example 14 Polylactic Acid Conjugates Of An Imidazoquinoline Using A Lithium Diisopropylamide Catalysis
  • the imidazoquinoline (R-848), D/L lactide, and associated glassware were all dried under vacuum at 50 °C for 8 hours prior to use.
  • To a round bottom flask equipped with a stir bar and condenser was added the R-848 (33 mg, 1.05 x 10 "4 moles), and dry toluene (5 mL). This was heated to reflux to dissolve all of the R-848.
  • the solution was stirred under nitrogen and cooled to room temperature to provide a suspension of finely divided R-848.
  • a solution of lithium diisopropyl amide 2.0 M in THF, 50 ⁇ L, 1.0 x 10 "4 moles
  • the polymer was dissolved in methylene chloride (10 mL) and the solution was dripped into stirred hexane (200 mL). The precipitated polymer was isolated by decantation and was dried under vacuum to give 1.47 grams of the polylactic acid - R-848 conjugate as a white solid. A portion of the polymer was hydrolyzed in base and examined by HPLC for R-848 content. By comparison to a standard curve of R-848 concentration vs. HPLC response, it was determined that the polymer contained 10.96 mg of R-848 per gram of polymer.
  • PLA D/L-polylactide
  • Resomer R202H from Boehringer-Ingelheim, KOH equivalent acid number of 0.21 mmol/g, intrinsic viscosity (iv): 0.21 dl/g)
  • DCM dichloromethane
  • EDC 2.0 g, 10.5 mmol, 5 eq
  • NHS 1.2 g, 10.5 mmol, 5 eq
  • the solution was concentrated to remove most of DCM and the residue was added to a solution of 250 mL of diethyl ether and 5 mL of MeOH to precipitate out the activated PLA-NHS ester.
  • the solvents were removed and the polymer was washed twice with ether (2 x 200 mL) and dried under vacuum to give PLA-NHS activated ester as a white foamy solid ( ⁇ 8 g recovered, 1 H NMR confirmed the presence of NHS ester).
  • the PLA-NHS ester is stored under argon in a below -10 0 C freezer before use.
  • reaction can be performed in DMF, THF, dioxane, or CHCl 3 instead of DCM.
  • DCC can be used instead of EDC (resulting DCC-urea is filtered off before precipitation of the PLA-NHS ester from ether).
  • the amount of EDC or DCC and NHS can be in the range of 2-10 eq of the PLA.
  • PLA D/L-polylactide
  • DCM dichloromethane
  • EDC 2.0 g, 10.5 mmol, 5 eq
  • NHS 1.2 g, 10.5 mmol, 5 eq
  • the resulting solution is stirred at room temperature for 3 days.
  • the solution is concentrated to remove most of DCM and the residue is added to a solution of 250 mL of diethyl ether and 5 mL of MeOH to precipitate out the activated PLA-NHS ester.
  • PLA-NHS activated ester is stored under argon in a below -10 0 C freezer before use.
  • the reaction can be performed in DMF, THF, dioxane, or CHC13 instead of DCM.
  • DCC can be used instead of EDC (resulting DCC-urea is filtered off before precipitation of the PLA-NHS ester from ether).
  • the amount of EDC or DCC and NHS can be in the range of 2-10 eq of the PLA.
  • low MW PLGA with 50% to 75% glycolide is converted to the corresponding PLGA-NHS activated ester and is stored under argon in a below -10 0 C freezer before use.
  • PLA (R202H, acid number of 0.21 mmol/g) (2.0 g, 0.42 mmol, 1.0 eq) was dissolved in 10 mL of dry acetonitrile. N,N'-disuccinimidyl carbonate (DSC) (215 mg, 1.26 mmol, 3.0 eq) and catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) were added. The resulting mixture was stirred under argon for 1 day. The resulting solution was concentrated to almost dryness.
  • DSC N,N'-disuccinimidyl carbonate
  • DMAP 4-(N,N-dimethylamino)pyridine
  • PLA (R202H) (5.0 g, 1.05 mmol) was dissolved in 25 mL of anhydrous DCM and 2.5 mL of anhydrous DMF. DCC (650 mg, 3.15 mmol, 5.0 eq) and pentafluorophenol (PFP) (580 mg, 3.15 mmol, 5.0 eq) were added. The resulting solution was stirred at room temperature for 6 days and then concentrated to remove DCM. The resulting residue was added to 250 mL of ether to precipitate out the activated PLA polymer which was washed with ether (2 x 10OmL) and dried under vacuum to give PLA-PFP activated ester as a white foamy solid (4.0 g).
  • Example 20 Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
  • PLA-NHS 1.0 g
  • R848 132 mg, 0.42 mmol
  • DIPEA diisopropylethylamine
  • the resulting solution was heated at 50-60 0 C for 2 days.
  • the solution was cooled to room temperature and added to 40 mL of de-ionized (DI) water to precipitate out the polymer product.
  • R848-PLA conjugate was then washed with DI water (40 mL) and ether (2 x 40 mL) and dried at 30 0 C under vacuum to give R848-PLA conjugate as a white foamy solid (0.8 g, H NMR showed the conjugation of R848 to PLA via the amide bond).
  • the degree of conjugation (loading) of R848 on the polymer was confirmed by HPLC analysis as follows: a weighed amount of polymer was dissolved in THF/MeOH and treated with 15% NaOH. The resulting hydrolyzed polymer products were analyzed for the amount of R848 by HPLC in comparison with a standard curve.
  • Example 21 Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
  • PLA-NHS 1.0 g, 0.21 mmol, 1.0 eq
  • R848 132 mg, 0.42 mmol, 2.0 eq
  • DIPEA 0.15 mL, 0.84 mmol, 4.0 eq
  • DMAP 25 mg, 0.21 mmol, 1.0 eq
  • the polymer was then washed with DI water (40 mL) and ether (2 x 40 mL) and dried at 30 0 C under vacuum to give PLA-R848 conjugate as a white foamy solid (0.7 g, 20 mg of the polymer was hydrolyzed in solution of 0.2 mL of THF, 0.1 mL of MeOH and 0.1 mL of 15% NaOH.
  • the amount of R848 on the polymer was determined to be about 35 mg/g by reverse phase HPLC analysis (C 18 column, mobile phase A: 0.1% TFA in water, mobile phase B: 0.1 % TFA in CH3CN, gradient).
  • PLA (R202H) (2.0 g, 0.42 mmol, 1.0 eq), DCC (260 mg, 1.26 mmol, 3.0 eq), NHS (145 mg, 1.26 mmol, 3.0 eq), R848 (200 mg, 0.63 mmol, 1.5 eq), DMAP (77 mg, 0.63 mmol, 1.5 eq) and DIPEA (0.223 mL, 1.26 mmol, 3.0 eq) were dissolved in 4 mL of dry DMF. The mixture was heated at 50-55 0 C for 3 days. The mixture was cooled to room temperature and diluted with DCM. The DCC-urea was filtered off and the filtrate was concentrated to remove DCM.
  • PLA (R202H) (2.0 g, 0.42 mmol, 1.0 eq), EDC (242 mg, 1.26 mmol, 3.0 eq), HOAt (171 mg, 1.26 mmol, 3.0 eq), R848 (200 mg, 0.63 mmol, 1.5 eq), and DIPEA (0.223 mL, 1.26 mmol, 3.0 eq) were dissolved in 4 mL of dry DMF. The mixture was heated at 50-55 0 C for 2 days.
  • the solution was cooled to room temperature and added to water (40 mL) to precipitate out the polymer product which was washed with water (40 mL), ether/MeOH (40 mL/2 mL) and ether (40 mL).
  • the orange colored polymer was dissolved in 4 mL of DCM and the resulting solution was added to 40 mL of ether to precipitate out the polymer without much of the orange color.
  • the light colored polymer was washed with ether (40 mL). After drying under vacuum at 30 0 C, the desired PLA-R848 conjugate was obtained as a light brown foamy solid (1.5 g).
  • Example 24 Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
  • PLA (R202H) (1.0 g, 0.21 mmol, 1.0 eq), EDC (161 mg, 0.84 mmol, 4.0 eq), HOBt.H2O (65 mg, 0.42 mmol, 2.0 eq), R848 (132 mg, 0.42 mmol, 2.0 eq), and DIPEA (0.150 mL, 0.84 mmol, 4.0 eq) were dissolved in 2 mL of dry DMF. The mixture was heated at 50-55 0 C for 2 days. The solution was cooled to room temperature and added to water (40 mL) to precipitate out the polymer product.
  • the orange colored polymer was dissolved in 2 mL of DCM and the resulting solution was added to 40 mL of ether to precipitate out the polymer which was washed with water/acetone (40 mL/2 mL) and ether (40 mL). After drying under vacuum at 30 0 C, the desired PLA-R848 conjugate was obtained as an off-white foamy solid (1.0 g, loading of R848 on polymer was about 45 mg/g based on HPLC analysis and confirmed by 1 H NMR). In the same manner, PLGA (75% Lactide)-R848 and PLGA (50% lactide)-R848 were prepared.
  • t-butyloxycarbonyl (tBOC) protected polyglycine carboxylic acid (I) is prepared by ring opening polymerization of glycine N-carboxyanhydride (Aldrich cat #369772) using 6-aminohexanoic acid benzyl ester (Aldrich cat #S33465) by the method of Aliferis et al. (Biomacromolecules, 5_, 1653, (2004)). Protection of the end amino group as the t-BOC carbamate followed by hydrogenation over palladium on carbon to remove the benzyl ester completes the synthesis of BOC protected polyglycine carboxylic acid (I).
  • the polymer is isolated by filtration and the polymer is then washed with 2-propanol (4 x 25 mL) to remove residual reagents and dried under vacuum at 35-40 0 C for 3 days.
  • the polymer is isolated as an off white solid in a yield of 5.1 g (88%).
  • the R848 loading that can be determined by NMR is 10.1%.
  • the r-BOC protecting group is removed using trifluoroacetic acid and the resulting polymer is grafted to PLA with carboxyl end groups by conventional methods.
  • Step 1 A t-BOC protected polyglycine/R848 conjugate (5 g) is dissolved in trifluoroacetic acid (25 mL) and this solution is warmed at 50°C for one hour. After cooling, the trifluoroacetic acid is removed under vacuum and the residue is triturated in ethyl acetate (25 mL). The polymer is isolated by filtration and is washed well with 2- propanol. After drying under vacuum there is obtained 4.5 grams of polymer as an off white solid.
  • Step 2 A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1 A, acid number 0.7 mmol/g, 10 g, 7.0 mmol) and HBTU (5.3 g, 14 mmol) in anhydrous DMF (100 mL) is stirred at RT under argon for 50 minutes.
  • the polymer from above (1.4 g, 7 mmol) dissolved in dry DMF (20 mL) is added, followed by diisopropylethylamine (DIPEA) (5 mL, 28 mmol). The mixture is stirred at RT for 6 h and then at 50-55° C overnight (16 h).
  • DIPEA diisopropylethylamine
  • a mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (30 mL) is stirred at RT under argon for 30 minutes.
  • Compound (I) (0.22 g,0.7 mmol) in 2 mL of dry DMSO is added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture is stirred at room temperature for 20 h.
  • DIPEA diisopropylethylamine
  • Example 28 Preparation Of PLGA-2,9-Dibenzyl-8-Hydroxyadenine Conjugate
  • a mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (30 mL) is stirred at RT under argon for 30 minutes.
  • Compound (II) (0.24 g,0.7 mmol) in 2 mL of dry DMSO is added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture is stirred at RT for 20 h.
  • DIPEA diisopropylethylamine
  • the poly(hexamethylene carbonate) diol is purchased from Aldrich Chemical Company, Cat # 461164.
  • the polymer (5 g, 2.5 x 10 "3 moles) is dissolved in methylene chloride 25 mL and the lactam of 2-pentyl-8-hydroxy-9-benzyladenine (2.05 g, 5.0 x 10 "3 moles) is added. This slurry is stirred as l,5,7-triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 x 10 "3 moles) is added in a single portion. After stirring at room temperature overnight a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL), and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 5.5 grams (78%) of polymer. NMR is used to determine the benzyladenine content which is 18%.
  • a 3-nicotine-PEG-PLA polymer was synthesized as follows:
  • the nicotine/PEG polymer (0.20 g, 5.7 x 10 '5 moles) was dissolved in dry tetrahydrofuran (10 mL) under nitrogen and the solution was stirred as a solution of lithium aluminum hydride in tetrahydrofuran (1.43 mL of 2.0 M, 2.85 x 10 '3 moles) was added. The addition of the lithium aluminum hydride caused the polymer to precipitate as a gelatinous mass. The reaction was heated to 80 0 C under a slow stream of nitrogen and the tetrahydrofuran was allowed to evaporate. The residue was then heated at 80 °C for 2 hours. After cooling, water (0.5 mL) was cautiously added.
  • the flask was placed in an oil bath set at 120 0 C, and once the lactide had dissolved, tin ethylhexanoate (5.5 mg, 1.36 x 10 "5 moles) was added. The reaction was allowed to proceed at 120 0 C for 16 hours. After cooling to room temperature, water (15 mL) was added and stirring was continued for 30 minutes. Methylene chloride (200 mL) was added, and after agitation in a separatory funnel, the phases were allowed to settle. The methylene chloride layer was isolated and dried over anhydrous magnesium sulfate. After filtration to remove the drying agent, the filtrates were evaporated under vacuum to give the polymer as a colorless foam.
  • Resiquimod (aka R848) was synthesized according to the synthesis provided in Example 99 of US Patent 5,389,640 to Gerster et al.
  • R848 was conjugated to PLA by a method provided above, and the PLA structure was confirmed by NMR.
  • PLA-PEG-nicotine conjugate was prepared according to Example 30.
  • PLA was purchased (Boehringer Ingelheim Chemicals, Inc., 2820 North Normandy Drive, Orlando, VA 23805).
  • the polyvinyl alcohol (Mw 11 KD - 31 KD, 85-89% hydrolyzed) was purchased from VWR scientific.
  • Ovalbumin peptide 323-339 was obtained from Bachem Americas Inc. (3132 Kashiwa Street, Torrance CA 90505. Part # 4064565).
  • Solution #1 (0.25 to 0.75 mL), solution #2 (0.25 mL), solution #3 (0.25 to 0.5 mL) and solution #4 (0.ImL) were combined in a small vial and the mixture was sonicated at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250.
  • solution #5 2.0 mL
  • sonication at 35% amplitude for 40 seconds using the Branson Digital Sonifier 250 forms the second emulsion.
  • This was added to a beaker containing phosphate buffer solution (30 mL) and this mixture was stirred at room temperature for 2 hours to form the nanoparticles.
  • nanoparticle dispersion a portion of the nanoparticle dispersion (7.4 mL) was transferred to a centrifuge tube and spun at 5,300g for one hour, supernatant was removed, and the pellet was re-suspended in 7.4 mL of phosphate buffered saline. The centrifuge procedure was repeated and the pellet was re-suspended in 2.2 mL of phosphate buffered saline for a final nanoparticle dispersion of about 10 mg/mL.
  • Ovalbumin peptide 323-339 a 17 amino acid peptide known to be a T cell epitope of Ovalbumin protein, was purchased from Bachem Americas Inc. (3132 Kashiwa Street, Torrance CA 90505.)
  • Resiquimod (aka R848) was synthesized according to a method provided in US Patent 6,608,201.
  • PLA-R848, resiquimod was conjugated to PLA with a molecular weight of approximately 2,500 Da according to a method provided above.
  • PLGA-R848, resiquimod was conjugated to PLGA with a molecular weight of approximately 4,100 Da according to a method provided above.
  • PS- 1826 DNA oligonucleotide with fully phosphorothioated backbone having nucleotide sequence 5'-TCC ATG ACG TTC CTG ACG TT-3' with a sodium counter-ion was purchased from Oligos Etc (9775 SW Commerce Circle C-6, Wilsonville, OR 97070.)
  • PO- 1826 DNA oligonucleotide with phosphodiester backbone having nucleotide sequence 5'-TCC ATG ACG TTC CTG ACG TT-3' with a sodium counter-ion was purchased from Oligos Etc. (9775 SW Commerce Circle C-6, Wilsonville, OR 97070.) ⁇
  • PLA with an inherent viscosity of 0.21 dL/g was purchased from SurModics Pharmaceuticals (756 Tom Martin Drive, Birmingham, AL 35211. Product Code 100 DL 2A.)
  • PLA with an inherent viscosity of 0.71 dL/g was purchased from SurModics Pharmaceuticals (756 Tom Martin Drive, Birmingham, AL 35211. Product Code 100 DL 7A.)
  • PLA with an inherent viscosity of 0.19 dL/g was purchased from Boehringer Ingelheim Chemicals, Inc. (Petersburg, VA. Product Code R202H.)
  • PLA-PEG-nicotine with a molecular weight of approximately 18,500 to 22,000 Da was prepared according to a method provided above.
  • PLA-PEG-R848 with a molecular weight of approximately 15,000 Da was synthesized was prepared according to a method provided above.
  • Solution IA Ovalbumin peptide 323 - 339 @ 35 mg/mL in dilute hydrochloric acid aqueous solution.
  • the solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
  • Solution IB Ovalbumin peptide 323 - 339 @ 70 mg/mL in dilute hydrochloric acid aqueous solution.
  • the solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
  • Solution 2A 0.21 -IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride.
  • the solution was prepared by first preparing two separate solutions at room temperature: 0.21 -IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride.
  • the final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution.
  • Solution 2B 0.71 -IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride.
  • the solution was prepared by first preparing two separate solutions at room temperature: 0.71 -IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride.
  • the final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution.
  • Solution 2C 0.19-IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride.
  • the solution was prepared by first preparing two separate solutions at room temperature: 0.19-IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride. The final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution.
  • Solution 3 A Oligonucleotide (either PS- 1826 or PO- 1826) @ 200 mg/ml in purified water. The solution was prepared by dissolving oligonucleotide in purified water at room temperature.
  • Solution 4A Same as Solution #2A.
  • Solution 4B Same as Solution #2B.
  • Solution 5 A Polyvinyl alcohol @ 50 mg/mL in 100 mM pH 8 phosphate buffer.
  • W 1/02 was prepared by combining solution 1 and solution 2 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250.
  • W3/O4 was prepared by combining solution 3 and solution 4 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250.
  • a third emulsion with two inner emulsion ([W1/O2,W3/O4]/W5) emulsion was prepared by combining 0.5 ml of each primary emulsion (W 1/02 and W3/O4) and solution 5 and sonicating at 30% amplitude for 40 to 60 seconds using the Branson Digital Sonifier 250.
  • the third emulsion was added to a beaker containing 7OmM phosphate buffer solution (30 mL) and stirred at room temperature for 2 hours to allow for the methylene chloride to evaporate and for the nanocarriers to form.
  • a portion of the nanocarriers were washed by transferring the nanocarrier suspension to a centrifuge tube and spinning at 13,823g for one hour, removing the supernatant, and re-suspending the pellet in phosphate buffered saline. The washing procedure was repeated and the pellet was re-suspended in phosphate buffered saline for a final nanocarrier dispersion of about 10 mg/mL.
  • oligonucleotide and peptide in the nanocarrier were determined by HPLC analysis.
  • Solution IA Ovalbumin peptide 323 - 339 @ 69 mg/mL in de-ionized water.
  • the solution was prepared by slowly adding ovalbumin peptide to the water while mixing at room temperature.
  • Solution IB Ovalbumin peptide 323 - 339 @ 70 mg/mL in dilute hydrochloric acid aqueous solution.
  • the solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
  • Solution 1C Oligonucleotide (PS- 1826) @ 50 mg/ml in purified water. The solution was prepared by dissolving oligonucleotide in purified water at room temperature.
  • Solution ID Ovalbumin peptide 323 - 339 @ 17.5 mg/mL in dilute hydrochloric acid aqueous solution.
  • the solution was prepared by dissolving ovalbumin peptide @ 70 mg/ml in 0.13N hydrochloric acid solution at room temperature and then diluting the solution with 3 parts purified water per one part of starting solution.
  • Solution 2 A R848 @ 10 mg/ml and 0.19-IV PLA @ 100 mg/mL in pure methylene chloride prepared at room temperature.
  • Solution 2B PLA-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
  • Solution 2C PLGA-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
  • Solution 2D PLA-PEG-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
  • Solution 3 A PLA-PEG-nicotine @ 100 mg/ml in pure methylene chloride prepared at room temperature.
  • Solution 4A 0.19-IV PLA @ 100 mg/mL in pure methylene chloride prepared at room temperature.
  • Solution 5A Polyvinyl alcohol @ 50 mg/mL in de-ionized water.
  • Solution 5B Polyvinyl alcohol @ 50 mg/mL in 100 mM pH 8 phosphate buffer.
  • the water in oil (W/O) primary emulsion was prepared by combining solution 1 and solution 2, solution 3, and solution 4 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250.
  • the water/oil/water (W/O/W) double emulsion was prepared by adding solution 5 to the primary emulsion and sonicating at 30% to 35% amplitude for 40 seconds using the Branson Digital Sonifier 250.
  • the double emulsion was added to a beaker containing phosphate buffer solution (30 mL) and stirred at room temperature for 2 hours to allow for the methylene chloride to evaporate and for the nanocarriers to form.
  • a portion of the nanocarriers were washed by transferring the nanocarrier suspension to a centrifuge tube and spinning at 5,000 to 9,500 RPM for one hour, removing the supernatant, and re-suspending the pellet in phosphate buffered saline. The washing procedure was repeated and the pellet was re-suspended in phosphate buffered saline for a final nanocarrier dispersion of about 10 mg/mL.
  • CpG immunological agent
  • Agilent 1100 reverse phase HPLC on Agilent 1100 system at 260 nm equipped with Waters XBridge C- 18 (2.5 micron particle, 5Ox 4.6 mm ID (part No. 186003090), column temp. 600C) using mobile phase A of 2% acetonitrile in 100 mM TEA- acetic acid buffer, pH about 8.0 and mobile B as 90% acetonitrile, 10% water (column equilibrated at 5% B, increased to 55% B in 8.5 min, then ramped to 90% B to 12 minutes. Strength of B was rapidly decreased to 5% in one minute and equilibrated until stop time, 16 minutes. The flow rate was 1 mL/min until end of the method, 16 minutes).
  • Nicotine analog was measured using reverse phase HPLC on Agilent 1100 system at 254 nm equipped with Waters X-Bridge C- 18 (5 micron particle, 100 x 4.6 mm ID, column temp at 400C) using Mobile Phase A (MPA) of 95% water/5% acetonitrile/0.1% TFA and Mobile Phase B (MPB) of 90 % acetonitrile/ 10% water/0.09% TFA (gradient: column was equilibrated at 5% B increased to 45% B in 14 minutes. Then ramped up to 95% B from 14 to 20 minutes. Mobile B strength was quickly decreased back to 5% and requilibrated until the end of the method.
  • MPA Mobile Phase A
  • MPB Mobile Phase B
  • the flow rate of the method was maintained at 0.5 ml/min with total run time of 25 minutes.
  • the NC suspension was centrifuged @14000 rpm for about 15-30 minutes depending on particle size.
  • the collected pellets were treated with 200 uL of cone.
  • NH 4 OH (8 M) for 2h with agitation until the solution turns clear.
  • a 200 uL of 1% TFA was added to neutralize the mixture solution, which brought the total volume of the pellet solution to 200 uL.
  • An aliquot of 50 uL of the solution was diluted with MPA(or water) to 200 uL and analyzed on HPLC as above to determine the amount present in the pellets.
  • NC suspension from the manufacture (about 10 mg/mL suspension in PBS) was spun down at 14000rpm for 15 to 30 minutes depending on particle size.
  • the collected pellets were re-suspended with 500 uL of water and sonicated for 30 minutes to fully disperse the particles.
  • the NC was then heated at 600 0 C for 10 minutes. Additional 200 uL of 1 N NaOH was added to the mixture, heated for another 5 minutes where the mixture becomes clear.
  • the hydrolyzed NC solution was centrifuged briefly at 14000 rpm. A final 2x dilution of the clear solution using water was then made and assayed on the reverse HPLC described above.
  • Encapsulated T cell antigens e.g., ova peptide, or human peptide, TT2pDT5t
  • NC suspension from the manufacture (about 10 mg/mL suspension in PBS) was spun down at 14000rpm for 15 to 30 minutes.
  • 100 uL of acetonitrile was added to the pellets to dissolve the polymer components of the NC.
  • the mixture was vortexed and sonicated for 1 to 5 minutes.
  • 100 uL 0.2% TFA was added to the mixture to extract the peptides and sonicated for another 5 minutes to ensure the break down of the aggregates.
  • the mixture was centrifuged at 14000rpm for 15 minutes to separate any insoluble materials (e.g., polymers).
  • a 50 uL aliquot of the supernatant diluted with 150 uL of MPA (or water) was taken and assayed on the reverse phase HPLC as described above.
  • the total amount of R848 and ova peptide present in the nanoparticles was as shown in Table 1.
  • An aqueous suspension of the tested synthetic nanocarriers was then diluted to a final stock volume of 4.4 mL with PBS.
  • a 200 ⁇ L aliquot was immediately removed from each of the NP sample and centrifuged @ 14000 rpm in a microcentrifuge tubes using a Microcentrifuge ( Model: Galaxy 16). 100 ⁇ L of supernatant was removed and diluted to 200 ⁇ L in HPLC Mobile Phase A (MPA) and assayed for the amount of R848 and ova peptide released on the reverse phase HPLC.
  • MPA HPLC Mobile Phase A
  • the remaining pellets (conjugated R848 samples only) from each sample was treated with 200 uL of cone. NH4OH (8 M) for 3h with mixing. After the mixture was settled, 200 uL of 1% TFA was added to bring total volume of the pellet to 400 uL. An aliquot of 50 uL of the solution was diluted with MPA to 200 uL and analyzed on HPLC as above to determine the amount of R848 and ova peptide that remained in the pellet after in vitro release to close the mass balance. For unconjugated samples, the sample was diluted with TFA in acetonitrile and assayed as above for R848 and peptide.
  • Citrate IVR a. Add 9 x 200 uL of each of the samples to microcentrifuge tubes. (3 x 200 for unconjugated) b. Centrifuge for 20 minutes @ 6000 rpm. c. Remove the supernatants. d. To each tube, add 500 ⁇ L of citrate buffer and resuspend thoroughly. e. Place samples in 37C oven
  • antigen e.g., ova peptide, T cell antigen
  • immunostimulatory agents e.g., R848, CpG
  • PBS phosphate buffered saline solution
  • the release of R848 from the nanocarrier composed of conjugated R848 and the ova peptide was achieved by exchanging desired amount of the aqueous suspension of the tested synthetic nanocarriers obtained from the manufacture (e.g., about 10 mg/mL in PBS) into the same volume of the appropriate release media (Citrate buffer 10OmM) via centrifugation and re-suspension.
  • desired amount of the aqueous suspension of the tested synthetic nanocarriers obtained from the manufacture e.g., about 10 mg/mL in PBS
  • the appropriate release media e.g., about 10 mg/mL in PBS
  • a 150 ⁇ L aliquot was immediately removed from NC suspension prior placing the NC suspension to 37 0 C thermal chamber and centrifuged @ 14000 rpm in microcentrifuge tubes using a microcentrifuge (Model: Galaxy 16). 100 ⁇ L of the supernatant was removed and diluted to 200 ⁇ L with HPLC Mobile Phase A (MPA) or water and assayed for the amount of R848 and ova peptide released on the reverse phase HPLC.
  • MPA HPLC Mobile Phase A
  • the remaining pellets from each time point were treated with 100 uL OfNH 4 OH (8 M) for 2h (or more) with agitation until solution turn clear.
  • a 100 uL of 1% TFA was added to neutralize the mixture, which brought the total volume of the pellet solution to 200 uL.
  • the release of CpG was determined similar to the measurement of R848 and ova peptide in terms of sample preparation and monitored time points. However, the amount of the CpG in the release media was assayed by the reverse phase HPLC method described above.
  • NC-Nic was a composition of nanocarriers exhibiting nicotine on the outer surface and, for all groups of mice except for Group 1, carrying CpG- 1826 (thioated) adjuvant, which was released from the nanocarriers at different rates.
  • the nanocarriers were prepared according to a method provided above. Serum anti-nicotine antibodies were then measured on days 26 and 40. EC 50 for anti- nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 4.
  • the Group 1 mice were administered NC-Nic w/o CpG- 1826 containing Ova peptide and polymers, 75% of which were PLA and 25% were PLA-PEG-Nic.
  • the Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 3.2% CpG-1826; release rate at 24 hours: 4.2 ⁇ g CpG per mg of NC.
  • the Group 3 mice were administered NC-Nic containing polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 3.1% CpG-1826; release rate at 24 hours: 15 ⁇ g CpG per mg of NC. Release was determined at a pH of 4.5.
  • Fig. 4 demonstrate that entrapment of adjuvant into nanocarriers is beneficial for the immune response against NC-associated antigen, and, furthermore, that the higher release rate of entrapped CpG adjuvant from within the nanocarriers (NC) at 24 hours produced an immune response, which was elevated compared to one induced by NC with a slower release rate of CpG adjuvant (a TLR9 agonist).
  • NC-Nic was a composition of nanocarriers exhibiting nicotine on the outer surface and carrying one of two forms of CpG- 1826 adjuvant.
  • the nanocarriers were prepared according to a method provided above. EC 50 for anti-nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 5.
  • the Group 1 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 6.2% CpG- 1826 (thioated); release rate at 24 hours: 16.6 ⁇ g CpG per mg of NC.
  • the Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA- PEG-Nic, and 7.2% CpG-1826 (thioated); release rate at 24 hours: 13.2 ⁇ g CpG per mg of NC.
  • the Group 3 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 7.9% CpG- 1826 (phosphodiester or PO, non-thioated); release rate at 24 hours: 19.6 ⁇ g CpG per mg of NC.
  • the Group 4 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 8.5% CpG-1826 (PO, non-thioated); release rate at 24 hours: 9.3 ⁇ g CpG per mg of NC. Release was determined at a pH of 4.5.
  • mice Groups of five mice were immunized three times (subcutaneously, hind limbs) at 2- week intervals (days 0, 14 and 28) with 100 ⁇ g of NC-Nic and serum anti-nicotine antibodies were then measured on days 26, 40 and 54.
  • the nanocarriers were prepared according to a method provided above. EC 50 for anti-nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 6.
  • the Group 1 mice were administered NC-Nic containing ova peptide and polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, but without adjuvant.
  • the Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 1.0% R848; of which 92% is released at 2 hours and more than 96% is released at 6 hours.
  • the Group 3 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA-R848 and 25% were PLA-PEG- Nic, and 1.3% R848, of which 29.4% is released at 6 hours and 67.8% is released at 24 hours.
  • mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA-R848 and 25% were PLA-PEG-Nic, and 1.4% of R848, of which 20.4% is released at 6 hours and 41.5% is released at 24 hours.
  • the Group 5 mice were administered NC-Nic containing ova peptide, polymers, 25% of which were PLA-PEG- R848, 50% PLA, and 25% were PLA-PEG-Nic, and 0.7% of R848; of which less than 1% is released at 24 hours. Release was determined at a pH of 4.5.

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Abstract

This invention relates to compositions, and related compounds and methods, of conjugates of immunomodulatory agents and polymers or unit(s) thereof. The conjugates may be contained within synthetic nanocarriers, and the immunomodulatory agents may be released from the synthetic nanocarriers in a pH sensitive manner.

Description

IMMUNQMODULATORY AGENT-POLYMERIC COMPOUNDS
RELATED APPLICATIONS
This application claims the benefit under 35 U.S. C. §119 of United States provisional applications 61/217129, 61/217117, 61/217124, and 61/217116, each filed May 27, 2009, the contents of each of which are incorporated herein by reference in their entirety.
FIELD OF THE INVENTION
This invention relates to compositions, and related compounds and methods, of conjugates of immunomodulatory agents and polymers or unit(s) thereof. The conjugates may be contained within synthetic nanocarriers, and the immunomodulatory agents may be released from the synthetic nanocarriers in a pH sensitive manner.
BACKGROUND
Immunomodulatory agents are used to produce immune responses in subjects. It is at times advantageous to attach such agents to delivery vehicles. Currently, known attachment chemistries often require certain reactive groups, utilize certain activation steps for attachment to occur, and/or result in conjugates that do not exhibit optimal properties. There is a need, therefore, for new methods for the attachment of immunomodulatory agents to delivery vehicles as well as a need for the resulting conjugates that exhibit desired properties.
SUMMARY OF THE INVENTION
In one aspect, the present invention provides a compound that comprises a structure as in formula (I):
Figure imgf000004_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2= H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and R8 is a biodegradable polymer or unit thereof. In one embodiment, for the compound of formula (I), the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof. In another embodiment, the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
In another aspect, the present invention provides a compound that comprises a structure as in formula (II):
Figure imgf000004_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; R5 is a polymer or unit thereof; X = C, N, O, or S; R6 and R7 are each independently absent, H, or substituted; and R9, Rio, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino. In a further embodiment, for the compound of formula (II), the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof. In another embodiment, the polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof. In yet another embodiment, the polymer is biodegradable.
In one embodiment, for a compound of formula (I) or (II), Rj is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In one embodiment, Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. In another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In still yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In one embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
In one embodiment, for a compound of formula (I) or (II), the polymer is insoluble in water at pH = 7.4 and at 250C. In another embodiment, for a compound of formula (I) or (II), the polymer is insoluble in water at pH = 7.4 and at 250C but soluble at pH = 4.5 and at 250C. In one embodiment, for a compound of formula (I) or (II), the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In another embodiment, for a compound of formula (I) or (II), the polymer or unit thereof does not comprise polyketal or unit thereof. In one embodiment, a composition is provided comprising a compound having a formula (I) or (II). - A -
In a further embodiment, the composition further comprises a pharmaceutically acceptable excipient.
In one embodiment, a synthetic nanocarrier is provided that comprises the compound having a formula (I) or (II). In a further embodiment, the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen. In yet another embodiment, the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature. In a further embodiment, the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle. In another embodiment, a composition is provided comprising a synthetic nanocarrier. In yet a further embodiment, the composition further comprises a pharmaceutically acceptable excipient.
In one embodiment, a composition comprising a vaccine comprising a compound of formula (I) or (II) is provided. In another embodiment, a composition comprising a vaccine comprising a composition comprising a compound of formula (I) or (II) is provided. In yet another embodiment, a composition comprising a vaccine comprising the synthetic nanocarrier comprising a compound of formula (I) or (II) is provided. In still yet another embodiment, a method comprises a administering to a subject any of the above described compounds, compositions, or synthetic nanocarrier is provided. In a further embodiment, an immune response is induced or enhanced in the subject following administering to a subject any of the above described compounds, compositions, or synthetic nanocarrier.
In one aspect, a method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000006_0001
comprises: activating a biodegradable polymer or unit thereof, and exposing the activated biodegradable polymer or unit thereof and a compound comprising a structure as in formula (III) to a base and/or solvent:
Figure imgf000007_0001
wherein R1 = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and Rg is a biodegradable polymer or unit thereof. In one embodiment, the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof. In a further embodiment, the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
In another aspect, a method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000007_0002
comprises exposing a composition comprising a polymer or unit thereof and a compound comprising a structure as in formula (III) to a coupling agent and base and/or solvent:
Figure imgf000008_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and R8 is a polymer or unit thereof.
In another aspect, a method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000008_0002
comprises combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000008_0003
(IV), wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; R5 is a polymer or unit thereof; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, R1O, Rn, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound. In some embodiment, the alcohol, catalyst, and compound are heated in the presence of a solvent.
In yet another aspect, a method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000009_0001
comprises combining an alcohol and a compound comprising a structure as in formula (IV):
Figure imgf000009_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; R5 is a polymer or unit thereof; X is C, N, O, or S; R$ and R7 are each independently H or substituted; and R9, Ri0, Rn, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst. In one embodiment, the alcohol, compound, and catalyst are heated while and/or after the catalyst is added.
In yet another aspect, a method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000010_0001
comprises combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000010_0002
wherein R| = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; R5 is a polymer or unit thereof; X is C, N, O, or S; R$ and R7 are each independently H or substituted; and R% Rio, Ri i, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
In one embodiment, for a method of making a compound of formula (II), the alcohol is a polymer or unit thereof with a terminal hydroxyl group. In a further embodiment, the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof. In yet another embodiment, the polymer or unit thereof comprises, poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof.
In one embodiment, for a method of making a compound of formula (II), the catalyst is a phosphazine base, 1 ,8-diazabicycloundec-7-ene, 1,4,7-triazabicyclodecene, or N- methyl-l,4,7-triazabicyclodecene. In another embodiment, the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In yet another embodiment, the polymer is insoluble in water at pH = 7.4 and at 250C. In another embodiment, the polymer is insoluble in water at pH = 7.4 and at 250C but soluble at pH = 4.5 and at 250C. In still yet another embodiment, the polymer or unit thereof does not comprise polyketal or unit thereof.
In one embodiment, for a method of making a compound of formula (II), Ri is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In still yet another embodiment, Rj is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. In another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In one embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In another embodiment, Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
In one aspect, the present invention provides a compound that comprises a structure as in formula (IV):
Figure imgf000012_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2= H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, R]0, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
In one embodiment, for a compound of formula (IV), Ri is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In still yet another embodiment, Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. In one embodiment, Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In still yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl. In one embodiment, a composition is provided having a compound of formula (IV).
In one aspect, the present invention provides a method for making a compound that comprises a structure as in formula (IV):
Figure imgf000013_0001
comprising combining, in the presence of a solvent and/or heat, a compound that comprises a structure as in formula (III):
Figure imgf000013_0002
and a compound comprising a structure as in formula (V):
Figure imgf000013_0003
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, Ri0, Rn, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
In one embodiment, for a method comprising a compound of formula (IV), R1 is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In still yet another embodiment, Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. In one embodiment, Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In yet another embodiment, Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In still yet another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
In one aspect, the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
Figure imgf000014_0001
comprising combining a catalyst, a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000015_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, Ri0, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound. In one embodiment, for a method comprising a compound of formula (VI), the alcohol, catalyst, and compound are heated in the presence of a solvent. In one embodiment of this aspect, the polymer is intended to include a unit of a polymer provided herein.
In another aspect, the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
Figure imgf000015_0002
comprising combining a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000016_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2= H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, Rj0, Rn, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst. In a further embodiment, the alcohol, compound, and catalyst are heated while and/or after the catalyst is added. In one embodiment of this aspect, the polymer is intended to include comprising a unit of a polymer provided herein.
In one aspect, the present invention provides a method for making a conjugate that comprises a structure as in formula (VI):
Figure imgf000016_0002
comprising combining, a catalyst, a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000017_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, R10, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
In one embodiment, for a method of making a compound comprising the formula (VI), the compound of formula (VII) is selected from the group consisting polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co-poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co- poly(ethylene)glycol, poly(propylene) glycol, and poly(hexamethylene carbonate)diol. In one embodiment, for a method of making a compound comprising the formula (VI), the catalyst is a phosphazine base, 1 ^-diazabicycloundec^-ene, 1 ,4,7-triazabicyclodecene, or N-methyl-MJ-triazabicyclodecene. In a further embodiment, the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In another embodiment, the polymer is insoluble in water at pH = 7.4 and at 25°C. In another embodiment, the polymer is insoluble in water at pH = 7.4 and at 250C but soluble at pH = 4.5 and at 250C. In yet another embodiment, the polymer does not comprise polyketal or unit thereof.
In one embodiment, for a method of making a compound having the formula (VI), Ri is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, R1 is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In still yet another embodiment, R1 is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. In one embodiment, Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In another embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In yet another embodiment, Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In still yet another embodiment, Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
In one aspect, a compound that comprises a structure as in formula (VI):
Figure imgf000018_0001
wherein each R1, independently, = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; each R2, independently, = H, alkyl, or substituted alkyl; each Y, independently, = N or C; each R3, independently, is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; each R4, independently, is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; each X, independently, is C, N, O, or S; each R6 and R7, independently, are each independently H or substituted; and each R9, Ri0, Rj1, and R12, independently, are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino, is provided.
In one embodiment, the polymer is selected from the group consisting of polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co- poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran). In another embodiment of this aspect, the polymer includes a unit of a polymer. In another embodiment, the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In a further embodiment, the polymer is insoluble in water at pH = 7.4 and at 250C. In yet another embodiment, the polymer does not comprise polyketal or unit thereof.
In one embodiment, Ri is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In another embodiment, Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In yet another embodiment, Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected. In still another embodiment, Rj is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy. hi a further embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino. In still another embodiment,Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy. In a further embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino. In yet a further embodiment, Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
In one embodiment, a composition comprising the above compounds is provided. In another embodiment, the composition further comprises a pharmaceutically acceptable excipient.
In another embodiment, a synthetic nanocarrier that comprises any of the foregoing compounds is provided. In one embodiment, the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen. In another embodiment, the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature. In still another embodiment, the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle.
In one embodiment, a composition comprising any of the foregoing synthetic nanocarriers is provided. In one embodiment, the composition further comprises a pharmaceutically acceptable excipient.
In another embodiment, a composition comprising a vaccine comprising any of the foregoing compounds is provided. In yet another embodiment, a composition comprising a vaccine comprising any of the foregoing compositions is provided. In another embodiment, a composition comprising a vaccine comprising any of the foregoing synthetic nanocarriers is provided.
In another embodiment, a method comprising administering any of the foregoing compounds, compositions or synthetic nanocarriers to a subject is provided. In one embodiment, the method is one where an immune response is induced or enhanced in the subject.
In another aspect, a compound having a structure of any of the compounds provided herein is provided. Compositions, synthetic nanocarriers, and vaccines comprising any of the compounds provided are also provided.
In a further aspect, any of the methods of making a compound provided herein are also provided.
BRIEF DESCRIPTION OF THE DRAWINGS
Fig. 1 shows the release of resiquimod (R848) from synthetic nanocarrier formulations at pH 7.4, 370C.
Fig. 2 shows the release of R848 from synthetic nanocarrier formulations at pH 4.5, 370C.
Fig. 3 shows the release of R848 from synthetic nanocarrier formulations at pH 7.4 and pH 4.5 at 24 hours.
Fig. 4 shows the level of antibody induction by synthetic nanocarriers with a CpG- containing immunostimulatory nucleic acid (Groups 2 and 3) as compared to the level of antibody induction by synthetic nanocarriers without the CpG-containing immunostimulatory nucleic acid (Group 1).
Fig. 5 shows the level of antibody induction by synthetic nanocarriers that release a phosphodiester, non-thioated CpG-containing immunostimulatory nucleic acid or a thioated CpG-containing immunostimulatory nucleic acid.
Fig. 6 shows the level of antibody induction by synthetic nanocarriers that release R848 at different rates.
DETAILED DESCRIPTION
Before describing the present invention in detail, it is to be understood that this invention is not limited to particularly exemplified materials or process parameters as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments of the invention only, and is not intended to be limiting of the use of alternative terminology to describe the present invention.
All publications, patents and patent applications cited herein, whether supra or infra, are hereby incorporated by reference in their entirety for all purposes.
As used in this specification and the appended claims, the singular forms "a," "an" and "the" include plural referents unless the content clearly dictates otherwise. For example, reference to "a polymer" includes a mixture of two or more such molecules, reference to "a solvent" includes a mixture of two or more such solvents, reference to "an adhesive" includes mixtures of two or more such materials, and the like.
INTRODUCTION
The inventors have unexpectedly and surprisingly discovered that the problems and limitations noted above can be overcome by practicing the invention disclosed herein. In particular, the inventors have unexpectedly discovered that it is possible to provide compounds, together with related compositions and methods, that comprise: a structure as in formula (I):
Figure imgf000022_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4Io form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a biodegradable polymer or unit thereof.
When using synthetic nanocarriers to produce an immune response in a subject, it is advantageous to include with the synthetic nanocarriers an immunomodulatory agent. Such an agent includes agents that are immunomodulatory when uncoupled from the synthetic nanocarrier but may not exhibit immunomodulatory properties when coupled to the synthetic nanocarrier. It is particularly advantageous to include the immunomodulatory agent as part of the synthetic nanocarriers itself. To achieve this, the immunomodulatory agent may be covalently attached to an appropriate polymer or unit thereof. It follows that the compounds and conjugates provided herein, in some embodiments, comprise an immunomodulatory agent, which also is intended to include an agent that is immunomodulatory when uncoupled from the polymer or unit thereof but that may not exhibit immunomodulatory properties when coupled to the polymer or unit thereof. The compounds provided herein can be incorporated into one or more synthetic nanocarriers. The compounds are incorporated into synthetic nanocarriers by methods known in the art or described elsewhere herein. In some embodiments, the polymer or unit thereof of the compounds or conjugates provided is a biodegradable polymer or unit thereof. The polymer or unit thereof, therefore, may comprise a polyester, polycarbonate, or polyamide, or unit thereof. It follows that the polymer or unit thereof may comprise poly(lactic acid), poly(glycolic acid), poly(lactic-co- glycolic acid), or polycaprolactone, or unit thereof. Generally, it is preferred that if the polymer comprises a polyether, such as poly(ethylene glycol) (PEG) or unit thereof, the polymer is a block-co-polymer of a polyether and a biodegradable polymer such that the polymer is biodegradable. In some embodiments, the polymer or unit thereof does not comprise a polyether, such as poly(ethylene glycol), or unit thereof. In other embodiments, the polymer does not solely comprise a polyether or unit thereof, such as poly(ethylene glycol), or unit thereof. Generally, for use as part of a synthetic nanocarrier the polymer of the compounds or conjugates provided herein is insoluble in water at pH = 7.4 and at 250C, is biodegradable, or both. In other embodiments, the polymer is insoluble in water at pH = 7.4 and at 250C but soluble at pH = 4.5 and at 250C. In still other embodiments, the polymer is insoluble in water at pH = 7.4 and at 250C but soluble at pH = 4.5 and at 250C and biodegradable. The compounds, conjugates, and synthetic nanocarriers provided herein are unique in composition and are useful for the preparation of vaccines and associated materials.
Methods for making the aforementioned compounds are also provided. In embodiments, a method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000023_0001
(I), comprises: activating a biodegradable polymer or unit thereof, and exposing the activated biodegradable polymer or unit thereof and a compound comprising a structure as in formula (III) to a base and/or solvent:
Figure imgf000024_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a biodegradable polymer or unit thereof.
In other embodiments, a method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000024_0002
(I), comprises: exposing a composition comprising a polymer or unit thereof and a compound comprising a structure as in formula (III) to a coupling agent and base and/or solvent:
Figure imgf000025_0001
wherein R1 = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a polymer or unit thereof.
The inventors have also unexpectedly discovered that it is possible to provide compounds, together with related compositions and methods, that comprise: a structure as in formula (II):
Figure imgf000025_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X = C, N, O, or S;
R6 and R7 are each independently absent, H, or substituted; and
R9, Rio, Ri 1, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
It has been discovered that it is possible to attach agents, such as immunomodulatory agents, comprising a structure as in formula (III), to a polymer or unit thereof with a terminal alcohol. Generally, terminal alcohols are less reactive, making attachment chemistry problematic. It has been found that imides, such as those comprising a structure as in formula (IV), will react with a terminal alcohol using catalysts commonly used in ring opening polymerizations. The resulting reaction product links the imide to the alcohol via an ester bond.
Accordingly, methods for making conjugates via the aforementioned chemistry are also provided. In some embodiments, a method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000026_0001
comprises: combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000027_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound.
In other embodiments, a method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000028_0001
comprises: combining an alcohol and a compound comprising a structure as in formula (IV):
Figure imgf000028_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst.
In yet other embodiments, a method for making a conjugate that comprises a structure as in formula (H):
Figure imgf000029_0001
comprises: combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000029_0002
wherein Rj = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof; X is C, N, O, or S;
R^ and R7 are each independently H or substituted; and
R9, R]0, Rii, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
Imides that may be used in the aforementioned reactions are also provided herein. In one embodiment, the imide compound comprises a structure as in formula (IV):
Figure imgf000030_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino. Such a compound can be made by methods that comprise combining, in the presence of a solvent and/or heat, with or without a dehydrating agent, such as a carboxylic acid anhydride or acetic anhydride, and a base, such as pyridine compound, a compound that comprises a structure as in formula (III):
Figure imgf000031_0001
a compound comprising a structure as in formula (V):
Figure imgf000031_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
Rό and R7 are each independently H or substituted; and
R9, Rio, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
The inventors have also unexpectedly and surprisingly discovered that it is possible to make polymeric synthetic nanocarriers using polymers that have a weight average molecular weight ranging from about 800 Daltons to about 10,000 Daltons, as determined using gel permeation chromatography. In the formulation of polymeric synthetic nanocarriers, it has been generally believed that the molecular weight of polymers should be or exceed 10,000 Daltons. At times, it is advantageous to append to the polymers an immunomodulatory compound that can be released from the synthetic nanocarrier by a nonspecific degradation step within the body. If the synthetic nanocarriers are to be used to target the endosomal/lysosomal compartment, then it is particularly advantageous to have this degradation step occur preferentially at an acidic pH. One drawback to appending the immunomodulatory agent to the polymer is that the loading is diminished as the molecular weight of the polymer increases. In addition, as the molecular weight of the polymer increases so does the hydrophobicity of the polymer with the results that the degradation rate at a given pH can decrease. This leads to an undesirably decreased release rate of the immunomodulatory agent. Surprisingly, it has been found that low molecular weight polymers with a weight average molecular weight ranging from about 800 Daltons to about 10,000 Daltons form stable synthetic nanocarriers and that the rate of release of immunomodulatory agent from the synthetic nanocarrier is increased as the molecular weight decreases. The polymer of the compounds provided herein, therefore, in embodiments, have a weight average molecular weight ranging from about 800 Daltons to about 10,000 Daltons, and such compounds may be used to produce synthetic nanocarriers.
The compounds provided herein or the synthetic nanocarriers that comprise the compounds may also be pH sensitive (i.e., exhibit increased release of the immunomodulatory agent at or about a pH of 4.5 as compared to the release of the immunomodulatory agent at or about physiological pH (i.e., pH or 7.4). The property of having relatively low release of immunomodulatory agents at or about physiological pH but increased release at or about a pH of 4.5 is desirable for it targets the immunomodulatory agents to the endosomal/lysosomal compartment of, for example, antigen presenting cells (APCs) which tend to possess a pH that is at or about 4.5. This low pH level is found primarily in the upper gastrointestinal tract and endosome/lysosomes. Accordingly, unless the inventive compounds and compositions are administered via an oral route of administration, accelerated release at pH at or about 4.5 provides for an enhanced concentration of the immunomodulatory agent in the target compartment. Under these conditions, the immunomodulatory agent exhibits a pH sensitive dissociation and is then free to interact with receptors within the endosome/lysosome and stimulate a desired immune response. Additionally, because the coupling of the polymer may occur at a position on the immunomodulatory agent or compound of interest that, generally, substantially reduces or eliminates the biological activity of the immunomodulatory agent or compound of interest, the coupling can effectively produce a "pro-drug" like effect. This effect, in combination with accelerated release in conditions present in the endosome/lysosome, means that off-target effects (e.g., adverse events) are reduced and safety margins increased for compositions and vaccines that comprise the inventive compounds and compositions.
The present invention will now be described in more detail.
DEFINITIONS
"Administering" or "administration" means providing a compound, conjugate, synthetic nanocarrier, or composition provided herein to a patient in a manner that is pharmacologically useful.
"APC targeting feature" means one or more portions of which the inventive synthetic nanocarriers are comprised that target the synthetic nanocarriers to professional antigen presenting cells ("APCs"), such as but not limited to dendritic cells, SCS macrophages, follicular dendritic cells, and B cells. In embodiments, APC targeting features may comprise immunofeature surface(s) and/or targeting moieties that bind known targets on APCs. In embodiments, APC targeting features may comprise one or more B cell antigens present on a surface of synthetic nanocarriers. In embodiments, APC targeting features may also comprise one or more dimensions of the synthetic nanoparticles that is selected to promote uptake by APCs.
In embodiments, targeting moieties for known targets on macrophages ("Mphs") comprise any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on macrophages (i.e., subcapsular sinus-Mph markers). Exemplary SCS-Mph markers include, but are not limited to, CD4 (L3T4, W3/25, T4); CD9 (p24, DRAP-I, MRP-I); CDl Ia (LFA- lα, α L Integrin chain); CDl Ib (αM Integrin chain, CR3, MoI, C3niR, Mac-1); CDl Ic (αX Integrin, pl50, 95, AXb2); CDwl2 (p90-120); CD13 (APN, gpl50, EC 3.4.1 1.2); CD14 (LPS-R); CD15 (X-Hapten, Lewis, X, SSEA-I, 3-FAL); CD15s (Sialyl Lewis X); CD15u (3' sulpho Lewis X); CD15su (6 sulpho-sialyl Lewis X); CD 16a (FCRIIIA); CD16b (FcgRIIIb); CDwI 7 (Lactosylceramide, LacCer); CDl 8 (Integrin β2, CDl la,b,c β-subunit); CD26 (DPP IV ectoeneyme, ADA binding protein); CD29 (Platelet GPIIa, β-1 integrin, GP); CD31 (PECAM-I, Endocam); CD32 (FCγRII); CD33 (gp67); CD35 (CRl, C3b/C4b receptor); CD36 (GpIIIb, GPIV, PASIV); CD37 (gp52-40); CD38 (ADP-ribosyl cyclase, TlO); CD39 (ATPdehydrogenase, NTPdehydrogenase-1); CD40 (Bp50); CD43 (Sialophorin, Leukosialin); CD44 (EMCRII, H-CAM, Pgp-1); CD45 (LCA, T200, B220, Ly5); CD45RA; CD45RB; CD45RC; CD45RO (UCHL-I); CD46 (MCP); CD47 (gp42, IAP, OA3, Neurophillin); CD47R (MEM-133); CD48 (Blast-1, Hulym3, BCM-I, OX-45); CD49a (VLA-I α, αl Integrin); CD49b (VLA-2α, gpla, α2 Integrin); CD49c (VLA-3α, α3 Integrin); CD49e (VLA-5α, α5 Integrin); CD49f (VLA-6α, α6 Integrin, gplc); CD50 (ICAM-3); CD51 (Integrin α, VNR-α, Vitronectin-Rα); CD52 (CAMPATH-I, HE5); CD53 (OX-44); CD54 (ICAM-I); CD55 (DAF); CD58 (LF A-3); CD59 (lF5Ag, H19, Protectin, MACIF, MIRL, P-18); CD60a (GD3); CD60b (9-O-acetyl GD3); CD61 (GP Ilia, β3 Integrin); CD62L (L-selectin, LAM-I, LECAM-I, MEL- 14, Leu8, TQl); CD63 (LIMP, MLAl, gp55, NGA, LAMP-3, ME491); CD64 (FcγRI); CD65 (Ceramide, VIM-2); CD65s (Sialylated-CD65, VIM2); CD72 (Ly- 19.2, Ly-32.2, Lyb-2); CD74 (Ii, invariant chain); CD75 (sialo-masked Lactosamine); CD75S (α2,6 sialylated Lactosamine); CD80 (B7, B7-1, BBl); CD81 (TAPA-I); CD82 (4F9, C33, IA4, KAIl, R2); CD84 (p75, GR6); CD85a (ILT5, LIR2, HL9); CD85d (ILT4, LIR2, MIRlO); CD85J (ILT2, LIRl, MIR7); CD85k (ILT3, LIR5, HMl 8); CD86 (B7-2/B70); CD87 (uPAR); CD88 (C5aR); CD89 (IgA Fc receptor, FcαR); CD91 (α2M-R, LRP); CDw92 (p70); CDw93 (GRl 1); CD95 (APO-I, FAS, TNFRSF6); CD97 (BL-KDD/F12); CD98 (4F2, FRP-I, RL- 388); CD99 (MIC2, E2); CD99R (CD99 Mab restricted); CDlOO (SEMA4D); CDlOl (IGSF2, P126, V7); CD102 (ICAM-2); CDl 11 (PVRLl, HveC, PRRl, Nectin 1, HIgR); CDl 12 (HveB, PRR2, PVRL2, Nectin2); CDl 14 (CSF3R, G-CSRF, HG-CSFR); CDl 15 (c-fms, CSF-IR, M-CSFR); CDl 16 (GMCSFRα); CDwI 19 (IFNγR, IFNγRA); CD 120a (TNFRI, p55); CD120b (TNFRII, p75, TNFR p80); CD121b (Type 2 IL-IR); CD122 (IL2Rβ); CD123 (IL-3Rα); CD124 (IL-4Rα); CD127 (p90, IL-7R, IL-7Rα); CD128a (IL- 8Ra, CXCRl, (Tentatively renamed as CDl 81)); CD128b (IL-8Rb, CSCR2, (Tentatively renamed as CD 182)); CDl 30 (gpl30); CDl 31 (Common β subunit); CD 132 (Common γ chain, IL-2Rγ); CDwI 36 (MSP-R, RON, pl58-ron); CDwI 37 (4-1 BB, ILA); CDl 39; CD141 (Thrombomodulin, Fetomodulin); CD 147 (Basigin, EMMPRIN, M6, 0X47); CD 148 (HPTP-η, p260, DEP-I); CDl 55 (PVR); CD 156a (CDl 56, ADAM8, MS2); CD156b (TACE, ADAM17, cSVP); CDwl56C (ADAMlO); CD157 (Mo5, BST-I); CD162 (PSGL-I); CD164 (MGC-24, MUC-24); CD165 (AD2, gp37); CD168 (RHAMM, IHABP, HMMR); CD 169 (Sialoadhesin, Siglec-1); CD 170 (Siglec 5); CDl 71 (LlCAM, NILE); CD172 (SIRP-lα, MyD-I); CD172b (SIRPβ); CD180 (RP105, Bgp95, Ly64); CD181 (CXCRl, (Formerly known as CD 128a)); CD 182 (CXCR2, (Formerly known as CD 128b)); CD184 (CXCR4, NPY3R); CD191 (CCRl); CD192 (CCR2); CD195 (CCR5); CDwl97 (CCR7 (was CDwI 97)); CDwI 98 (CCR8); CD204 (MSR); CD205 (DEC-25); CD206 (MMR); CD207 (Langerin); CDw210 (CK); CD213a (CK); CDw217 (CK); CD220 (Insulin R); CD221 (IGFl R); CD222 (M6P-R, IGFII-R); CD224 (GGT); CD226 (DNAM-I, PTAl); CD230 (Prion Protein (PrP)); CD232 (VESP-R); CD244 (2B4, P38, NAIL); CD245 (p220/240); CD256 (APRIL, TALL2, TNF (ligand) superfamily, member 13); CD257 (BLYS, TALLl, TNF (ligand) superfamily, member 13b); CD261 (TRAIL-Rl, TNF-R superfamily, member 10a); CD262 (TRAIL-R2, TNF-R superfamily, member 10b); CD263 (TRAIL-R3, TNBF-R superfamily, member 10c); CD264 (TRAIL-R4, TNF-R superfamily, member 1Od); CD265 (TRANCE-R, TNF-R superfamily, member Ha); CD277 (BT3.1, B7 family: Butyrophilin 3); CD280 (TEM22, ENDO 180); CD281 (TLRl, TOLL-like receptor 1); CD282 (TLR2, TOLL-like receptor 2); CD284 (TLR4, TOLL-like receptor 4); CD295 (LEPR); CD298 (ATP1B3, Na K ATPase, β3 subunit); CD300a (CMRF-35H); CD300c (CMRF-35A); CD300e (CMRF-35L1); CD302 (DCLl); CD305 (LAIRl); CD312 (EMR2); CD315 (CD9P1); CD317 (BST2); CD321 (JAMl); CD322 (JAM2); CDw328 (Siglec7); CDw329 (Siglec9); CD68 (gp 110, Macrosialin); and/or mannose receptor; wherein the names listed in parentheses represent alternative names.
In embodiments, targeting moieties for known targets on dendritic cells ("DCs") comprise any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on DCs (i.e., a DC marker). Exemplary DC markers include, but are not limited to, CDIa (R4, T6, HTA-I); CDIb (Rl); CDIc (M241, R7); CDId (R3); CDIe (R2); CDl Ib (αM Integrin chain, CR3, MoI, C3niR, Mac-1); CDl Ic (αX Integrin, pl50, 95, AXb2); CDwI 17 (Lactosylceramide, LacCer); CD19 (B4); CD33 (gp67); CD 35 (CRl, C3b/C4b receptor); CD 36 (GpIIIb, GPIV, PASIV); CD39 (ATPdehydrogenase, NTPdehydrogenase-1); CD40 (Bp50); CD45 (LCA, T200, B220, Ly5); CD45RA; CD45RB; CD45RC; CD45RO (UCHL- 1); CD49d (VLA-4α, α4 Integrin); CD49e (VLA-5α, α5 Integrin); CD58 (LF A-3); CD64 (FcγRI); CD72 (Ly-19.2, Ly-32.2, Lyb-2); CD73 (Ecto-5'nucloticlase); CD74 (Ii, invariant chain); CD80 (B7, B7-1, BBl); CD81 (TAPA-I); CD83 (HB15); CD85a (ILT5, LIR3, HL9); CD85d (ILT4, LIR2, MIRlO); CD85J (ILT2, LIRl, MIR7); CD85k (ILT3, LIR5, HMl 8); CD86 (B7-2/B70); CD88 (C5aB); CD97 (BL-KDD/F12); CDlOl (IGSF2, P 126, V7); CDl 16 (GM-CSFRα); CD120a (TMFRI, p55); CD120b (TNFRII, p75, TNFR p80); CD123 (IL-3Rα); CD139; CD148 (HPTP-η, DEP-I); CD150 (SLAM, IPO-3); CD156b (TACE, ADAM17, cSVP); CD157 (Mo5, BST-I); CD167a (DDRl, trkE, cak); CD168 (RHAMM, IHABP, HMMR); CD 169 (Sialoadhesin, Siglec-1); CD 170 (Siglec-5); CDl 71 (LlCAM, NILE); CD172 (SIRP-lα, MyD-I); CD172b (SIRPβ); CD180 (RP105, Bgp95, Ly64); CD 184 (CXCR4, NPY3R); CD 193 (CCR3); CD 196 (CCR6); CD 197 (CCR7 (ws CDwl97)); CDwl97 (CCR7, EBIl, BLR2); CD200 (0X2); CD205 (DEC-205); CD206 (MMR); CD207 (Langerin); CD208 (DC-LAMP); CD209 (DCSIGN); CDw218a (IL18Rα); CDw218b (IL8Rβ); CD227 (MUCl, PUM, PEM, EMA); CD230 (Prion Protein (PrP)); CD252 (OX40L, TNF (ligand) superfamily, member 4); CD258 (LIGHT, TNF (ligand) superfamily, member 14); CD265 (TRANCE-R, TNF-R superfamily, member 1 Ia); CD271 (NGFR, p75, TNFR superfamily, member 16); CD273 (B7DC, PDL2); CD274 (B7H1, PDLl); CD275 (B7H2, ICOSL); CD276 (B7H3); CD277 (BT3.1, B7 family: Butyrophilin 3); CD283 (TLR3, TOLL-like receptor 3); CD289 (TLR9, TOLL-like receptor 9); CD295 (LEPR); CD298 (ATPl B3, Na K ATPase β3 submit); CD300a (CMRF-35H); CD300c (CMRF-35A); CD301 (MGLl, CLECSF14); CD302 (DCLl); CD303 (BDCA2); CD304 (BDCA4); CD312 (EMR2); CD317 (BST2); CD319 (CRACC, SLAMF7); CD320 (8D6); and CD68 (gpl 10, Macrosialin); class II MHC; BDCA-I; Siglec-H; wherein the names listed in parentheses represent alternative names.
In embodiments, targeting can be accomplished by any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on B cells (i.e., B cell marker). Exemplary B cell markers include, but are not limited to, CDIc (M241, R7); CDId (R3); CD2 (E-rosette R, TI l, LFA-2); CD5 (Tl, Tp67, Leu-1, Ly-I); CD6 (T12); CD9 (p24, DRAP-I, MRP-I); CDl Ia (LFA-lα, αL Integrin chain); CDl Ib (αM Integrin chain, CR3, MoI, C3niR, Mac- 1); CDl Ic (αX Integrin, P150, 95, AXb2); CDwl7 (Lactosylceramide, LacCer); CD18 (Integrin β2, CDl Ia, b, c β-subunit); CD 19 (B4); CD20 (Bl, Bp35); CD21 (CR2, EBV-R, C3dR); CD22 (BL-CAM, Lyb8, Siglec-2); CD23 (FceRII, B6, BLAST-2, Leu-20); CD24 (BBA-I, HSA); CD25 (Tac antigen, IL-2Rα, p55); CD26 (DPP IV ectoeneyme, ADA binding protein); CD27 (T14, S 152); CD29 (Platelet GPIIa, β-1 integrin, GP); CD31 (PECAM-I, Endocam); CD32 (FCγRII); CD35 (CRl, C3b/C4b receptor); CD37 (gp52-40); CD38 (ADPribosyl cyclase, TlO); CD39 (ATPdehydrogenase, NTPdehydrogenase-1); CD40 (Bp50); CD44 (ECMRII, H-CAM, Pgp-1); CD45 (LCA, T200, B220, Ly5); CD45RA; CD45RB; CD45RC; CD45RO (UCHL-I); CD46 (MCP); CD47 (gp42, IAP, OA3, Neurophilin); CD47R (MEM-133); CD48 (Blast-1, Hulym3, BCM-I, OX-45); CD49b (VLA-2α, gpla, α2 Integrin); CD49c (VLA-3α, α3 Integrin); CD49d (VLA-4α, α4 Integrin); CD50 (ICAM-3); CD52 (CAMPATH-I, HES); CD53 (OX-44); CD54 (ICAM-I); CD55 (DAF); CD58 (LF A-3); CD60a (GD3); CD62L (L-selectin, LAM-I, LECAM-I, MEL- 14, Leu8, TQl); CD72 (Ly- 19.2, Ly-32.2, Lyb-2); CD73 (Ecto-5'-nuciotidase); CD74 (Ii, invariant chain); CD75 (sialo-masked Lactosamine); CD75S (α2, 6 sialytated Lactosamine); CD77 (Pk antigen, BLA, CTH/Gb3); CD79a (Igα, MBl); CD79b (Igβ, B29); CD80; CD81 (TAPA-I); CD82 (4F9, C33, IA4, KAIl, R2); CD83 (HB15); CD84 (P75, GR6); CD85J (ILT2, LIRl, MIR7); CDw92 (p70); CD95 (APO-I, FAS, TNFRSF6); CD98 (4F2, FRP-I, RL-388); CD99 (MIC2, E2); CDlOO (SEMA4D); CD102 (ICAM-2); CD108 (SEMA7A, JMH blood group antigen); CDwI 19 (IFNγR, IFNγRa); CD120a (TNFRI, p55); CD120b (TNFRII, p75, TNFR p80); CD121b (Type 2 IL-IR); CD122 (IL2Rβ); CD124 (IL- 4Rα); CD130 (gpl30); CD132 (Common γ chain, IL-2Rγ); CDwl37 (4-1BB, ILA); CD139; CD147 (Basigin, EMMPRIN, M6, 0X47); CD150 (SLAM, IPO-3); CD162 (PSGL-I); CD 164 (MGC-24, MUC-24); CD 166 (ALCAM, KG-CAM, SC-I, BEN, DM-GRASP); CD167a (DDRl, trkE, cak); CD171 (LlCMA, NILE); CD175s (Sialyl-Tn (S-Tn)); CD180 (RP105, Bgp95, Ly64); CD184 (CXCR4, NPY3R); CD185 (CXCR5); CD192 (CCR2); CD 196 (CCR6); CD 197 (CCR7 (was CDwI 97)); CDwI 97 (CCR7, EBIl, BLR2); CD200 (0X2); CD205 (DEC-205); CDw210 (CK); CD213a (CK); CDw217 (CK); CDw218a (ILl 8Rα); CDw218b (IL18Rβ); CD220 (Insulin R); CD221 (IGFl R); CD222 (M6P-R, IGFII-R); CD224 (GGT); CD225 (Leul3); CD226 (DNAM-I, PTAl); CD227 (MUCl, PUM, PEM, EMA); CD229 (Ly9); CD230 (Prion Protein (Prp)); CD232 (VESP-R); CD245 (p220/240); CD247 (CD3 Zeta Chain); CD261 (TRAIL-Rl, TNF-R superfamily, member 10a); CD262 (TRAIL-R2, TNF-R superfamily, member 10b); CD263 (TRAIL-R3, TNF-R superfamily, member 10c); CD264 (TRAIL-R4, TNF-R superfamily, member 1Od); CD265 (TRANCE-R, TNF-R superfamily, member 1 Ia); CD267 (TACI, TNF-R superfamily, member 13B); CD268 (BAFFR, TNF-R superfamily, member 13C); CD269 (BCMA, TNF- R superfamily, member 16); CD275 (B7H2, ICOSL); CD277 (BT3.1.B7 family: Butyrophilin 3); CD295 (LEPR); CD298 (ATP 1B3 Na K ATPase β3 subunit); CD300a (CMRF-35H); CD300c (CMRF-35A); CD305 (LAIRl); CD307 (IRTA2); CD315 (CD9P1); CD316 (EW12); CD317 (BST2); CD319 (CRACC, SLAMF7); CD321 (JAMl); CD322 (JAM2); CDw327 (Siglecό, CD33L); CD68 (gp 100, Macrosialin); CXCR5; VLA-4; class II MHC; surface IgM; surface IgD; APRL; and/or BAFF-R; wherein the names listed in parentheses represent alternative names. Examples of markers include those provided elsewhere herein.
In some embodiments, B cell targeting can be accomplished by any targeting moiety that specifically binds to any entity (e.g., protein, lipid, carbohydrate, small molecule, etc.) that is prominently expressed and/or present on B cells upon activation (i.e., activated B cell marker). Exemplary activated B cell markers include, but are not limited to, CDIa (R4, T6, HTA-I); CDIb (Rl); CD15s (Sialyl Lewis X); CD15u (31 sulpho Lewis X); CD15su (6 sulpho-sialyl Lewis X); CD30 (Ber-H2, Ki-I); CD69 (AIM, EA 1, MLR3, gp34/28, VEA); CD70 (Ki-24, CD27 ligand); CD80 (B7, B7-1, BBl); CD86 (B7-2/B70); CD97 (BLKDD/F12); CD 125 (IL-5Rα); CD 126 (IL-6Rα); CD 138 (Syndecan-1, Heparan sulfate proteoglycan); CD 152 (CTLA-4); CD252 (OX40L, TNF(ligand) superfamily, member 4); CD253 (TRAIL, TNF(ligand) superfamily, member 10); CD279 (PDl); CD289 (TLR9, TOLL-like receptor 9); and CD312 (EMR2); wherein the names listed in parentheses represent alternative names. Examples of markers include those provided elsewhere herein.
"B cell antigen" means any antigen that naturally is or could be engineered to be recognized by a B cell, and triggers (naturally or being engineered as known in the art) an immune response in a B cell (e.g., an antigen that is specifically recognized by a B cell receptor on a B cell). In some embodiments, an antigen that is a T cell antigen is also a B cell antigen. In other embodiments, the T cell antigen is not also a B cell antigen. B cell antigens include, but are not limited to proteins, peptides, small molecules, and carbohydrates. In some embodiments, the B cell antigen is a non-protein antigen (i.e., not a protein or peptide antigen). In some embodiments, the B cell antigen is a carbohydrate associated with an infectious agent. In some embodiments, the B cell antigen is a glycoprotein or glycopeptide associated with an infectious agent. The infectious agent can be a bacterium, virus, fungus, protozoan, parasite or prion. In some embodiments, the B cell antigen is a poorly immunogenic antigen. In some embodiments, the B cell antigen is an abused substance or a portion thereof. In some embodiments, the B cell antigen is an addictive substance or a portion thereof. Addictive substances include, but are not limited to, nicotine, a narcotic, a cough suppressant, a tranquilizer, and a sedative. In some embodiments, the B cell antigen is a toxin, such as a toxin from a chemical weapon or natural sources, or a pollutant. The B cell antigen may also be a hazardous environmental agent. In other embodiments, the B cell antigen is an alloantigen, an allergen, a contact sensitizer, a degenerative disease antigen, a hapten, an infectious disease antigen, a cancer antigen, an atopic disease antigen, an addictive substance, a xenoantigen, or a metabolic disease enzyme or enzymatic product thereof.
"Biodegradable polymer" means a polymer that degrades over time when introduced into the body of a subject. Biodegradable polymers, include but are not limited to, polyesters, polycarbonates, polyketals, or polyamides. Such polymers may comprise poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone. In some embodiments, the biodegradable polymer comprises a block-co-polymer of a polyether, such as poly(ethylene glycol), and a polyester, polycarbonate, or polyamide, or other biodegradable polymer. In embodiments, the biodegradable polymer comprises a block-co-polymer of poly(ethylene glycol) and poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone. In some embodiments, however, the biodegradable polymer does not comprise a polyether, such as poly(ethylene glycol), or consist solely of the polyether. Generally, for use as part of a synthetic nanocarrier the biodegradable polymer is insoluble in water at pH = 7.4 and at 25°C. The biodegradable polymer, in embodiments, have a weight average molecular weight ranging from about 800 to about 50,000 Daltons, as determined using gel permeation chromatography. In some embodiments, the weight average molecular weight is from about 800 Daltons to about 10,000 Daltons, preferably from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography. In other embodiments, the weight average molecular weight is from 1000 Daltons to 10,000 Daltons, as determined by gel permeation chromatography. In an embodiment, the biodegradable polymer does not comprise polyketal or a unit thereof. "Couple" or "Coupled" or "Couples" (and the like) means attached to a polymer or unit thereof or attached to or contained within the synthetic nanocarrier. In some embodiments, the covalent coupling is mediated by one or more linkers. In some embodiments, the coupling is non-covalent. In some embodiments, the non-covalent coupling is mediated by charge interactions, affinity interactions, metal coordination, physical adsorption, hostguest interactions, hydrophobic interactions, TT stacking interactions, hydrogen bonding interactions, van der Waals interactions, magnetic interactions, electrostatic interactions, dipole-dipole interactions, and/or combinations thereof. In embodiments, the coupling may arise in the context of encapsulation within the synthetic nanocarriers, using conventional techniques. Any of the aforementioned couplings may be arranged to be on a surface or within an inventive synthetic nanocarrier.
"Dosage form" means a compound, conjugate, synthetic nanocarrier, or composition provided herein in a medium, carrier, vehicle, or device suitable for administration to a subject.
"Encapsulate" means to enclose within a synthetic nanocarrier, preferably enclose completely within a synthetic nanocarrier. Most or all of a substance that is encapsulated is not exposed to the local environment external to the synthetic nanocarrier. Encapsulation is distinct from absorbtion, which places most or all of a substance on a surface of a synthetic nanocarrier, and leaves the substance exposed to the local environment external to the synthetic nanocarrier. In embodiments, the immunomodulatory agent or B cell and/or T cell antigen is encapsulated within the synthetic nanocarrier.
"Immunomodulatory agent" means an agent that modulates an immune response. "Modulate", as used herein, refers to inducing, enhancing, stimulating, or directing an immune response. Such agents include immunostimulatory agents that stimulate (or boost) an immune response to an antigen but is not an antigen or derived from an antigen. In some embodiments, the immunomodulatory agent is on the surface of the synthetic nanocarrier and/or is incorporated within the synthetic nanocarrier. In embodiments, the immunomodulatory agent is coupled to the synthetic nanocarrier via the polymer or unit thereof of the compounds or conjugates provided.
In some embodiments, all of the immunomodulatory agents of a synthetic nanocarrier are identical to one another. In some embodiments, a synthetic nanocarrier comprises a number of different types of immunomodulatory agents. In some embodiments, a synthetic nanocarrier comprises multiple individual immunomodulatory agents, all of which are identical to one another. In some embodiments, a synthetic nanocarrier comprises exactly one type of immunomodulatory agent. In some embodiments, a synthetic nanocarrier comprises exactly two distinct types of immunomodulatory agents. In some embodiments, a synthetic nanocarrier comprises greater than two distinct types of immunomodulatory agents.
"Maximum dimension of a synthetic nanocarrier" means the largest dimension of a nanocarrier measured along any axis of the synthetic nanocarrier. "Minimum dimension of a synthetic nanocarrier" means the smallest dimension of a synthetic nanocarrier measured along any axis of the synthetic nanocarrier. For example, for a spheroidal synthetic nanocarrier, the maximum and minimum dimension of a synthetic nanocarrier would be substantially identical, and would be the size of its diameter. Similarly, for a cubic synthetic nanocarrier, the minimum dimension of a synthetic nanocarrier would be the smallest of its height, width or length, while the maximum dimension of a synthetic nanocarrier would be the largest of its height, width or length. In an embodiment, a minimum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample, is greater than 100 nm. In an embodiment, a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample, is equal to or less than 5 μm. Preferably, a minimum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample, is equal to or greater than 110 nm, more preferably equal to or greater than 120 nm, more preferably equal to or greater than 130 nm, and more preferably still equal to or greater than 150 nm. Preferably, a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample is equal to or less than 3 μm, more preferably equal to or less than 2 μm, more preferably equal to or less than 1 μm, more preferably equal to or less than 800 nm, more preferably equal to or less than 600 nm, and more preferably still equal to or less than 500 nm. In preferred embodiments, a maximum dimension of at least 75%, preferably at least 80%, more preferably at least 90%, of the synthetic nanocarriers in a sample, based on the total number of synthetic nanocarriers in the sample, is equal to or greater than lOOnm, more preferably equal to or greater than 120 nm, more preferably equal to or greater than 130 nm, more preferably equal to or greater than 140 nm, and more preferably still equal to or greater than 150 nm. Measurement of synthetic nanocarrier sizes is obtained by suspending the synthetic nanocarriers in a liquid (usually aqueous) media and using dynamic light scattering (e.g. using a Brookhaven ZetaPALS instrument).
"Pharmaceutically acceptable excipient" means a pharmacologically inactive substance added to an inventive compound, conjugate, synthetic nanocarrier or composition to further facilitate its administration. Examples, without limitation, of pharmaceutically acceptable excipients include calcium carbonate, calcium phosphate, various diluents, various sugars and types of starch, cellulose derivatives, gelatin, vegetable oils, and polyethylene glycols.
"Release Rate" means the rate that an entrapped immunomodulatory agent flows from a composition, such as a synthetic nanocarrier, into a surrounding media in an in vitro release test. First, the synthetic nanocarrier is prepared for the release testing by placing into the appropriate in vitro release media. This is generally done by exchanging the buffer after centrifugation to pellet the synthetic nanocarrier and reconstitution of the synthetic nanocarriers using a mild condition. The assay is started by placing the sample at 370C in an appropriate temperature-controlled apparatus. A sample is removed at various time points.
The synthetic nanocarriers are separated from the release media by centrifugation to pellet the synthetic nanocarriers. The release media is assayed for the immunomodulatory agent that has dispersed from the synthetic nanocarriers. The immunomodulatory agent is measured using HPLC to determine the content and quality of the immunomodulatory agent. The pellet containing the remaining entrapped immunomodulatory agent is dissolved in solvents or hydrolyzed by base to free the entrapped immunomodulatory agent from the synthetic nanocarriers. The pellet-containing immunomodulatory agent is then also measured by HPLC to determine the content and quality of the immunomodulatory agent that has not been released at a given time point.
The mass balance is closed between immunomodulatory agent that has been released into the release media and what remains in the synthetic nanocarriers. Data are presented as the fraction released or as the net release presented as micrograms released over time. "Subject" means an animal, including mammals such as humans and primates; avians; domestic household or farm animals such as cats, dogs, sheep, goats, cattle, horses and pigs; laboratory animals such as mice, rats and guinea pigs; fish; and the like.
"Synthetic nanocarrier(s)" means a discrete object that is not found in nature, and that possesses at least one dimension that is less than or equal to 5 microns in size. Albumin nanoparticles are expressly included as synthetic nanocarriers.
Synthetic nanocarriers include the compounds and compositions provided herein and, therefore, can be polymeric nanoparticles. In some embodiments, synthetic nanocarriers can comprise one or more polymeric matrices. The synthetic nanocarriers, however, can also include other nanomaterials and may be, for example, lipid-polymer nanoparticles. In some embodiments, a polymeric matrix can be surrounded by a coating layer (e.g., liposome, lipid monolayer, micelle, etc.). In some embodiments, the synthetic nanocarrier is not a micelle. In some embodiments, a synthetic nanocarrier may comprise a core comprising a polymeric matrix surrounded by a lipid layer (e.g., lipid bilayer, lipid monolayer, etc.). In some embodiments, the various elements of the synthetic nanocarriers can be coupled with the polymeric matrix.
The synthetic nanocarriers may comprise one or more lipids. In some embodiments, a synthetic nanocarrier may comprise a liposome. In some embodiments, a synthetic nanocarrier may comprise a lipid bilayer. In some embodiments, a synthetic nanocarrier may comprise a lipid monolayer. In some embodiments, a synthetic nanocarrier may comprise a micelle. In some embodiments, a synthetic nanocarrier may comprise a non- polymeric core (e.g., metal particle, quantum dot, ceramic particle, bone particle, viral particle, proteins, nucleic acids, carbohydrates, etc.) surrounded by a lipid layer (e.g., lipid bilayer, lipid monolayer, etc.).
The synthetic nanocarriers may comprise lipid-based nanoparticles, metallic nanoparticles, surfactant-based emulsions, dendrimers, buckyballs, nanowires, virus-like particles, peptide or protein-based particles (such as albumin nanoparticles). Synthetic nanocarriers may be a variety of different shapes, including but not limited to spheroidal, cubic, pyramidal, oblong, cylindrical, toroidal, and the like. Synthetic nanocarriers according to the invention comprise one or more surfaces. Exemplary synthetic nanocarriers that can be adapted for use in the practice of the present invention comprise: (1) the biodegradable nanoparticles disclosed in U.S. Patent 5,543,158 to Gref et al., (2) the polymeric nanoparticles of Published U.S. Patent Application 20060002852 to Saltzman et al., (3) the lithographically constructed nanoparticles of Published U.S. Patent Application 20090028910 to DeSimone et al., (4) the disclosure of WO 2009/051837 to von Andrian et al., or (5) the nanoparticles disclosed in Published U.S. Patent Application 2008/0145441 to Penades et al.
Synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface with hydroxyl groups that activate complement or alternatively comprise a surface that consists essentially of moieties that are not hydroxyl groups that activate complement. In a preferred embodiment, synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface that substantially activates complement or alternatively comprise a surface that consists essentially of moieties that do not substantially activate complement. In a more preferred embodiment, synthetic nanocarriers according to the invention that have a minimum dimension of equal to or less than about 100 nm, preferably equal to or less than 100 nm, do not comprise a surface that activates complement or alternatively comprise a surface that consists essentially of moieties that do not activate complement. In embodiments, synthetic nanocarriers may possess an aspect ratio greater than 1 :1, 1 :1.2, 1 :1.5, 1 :2, 1 :3, 1 :5, 1 :7, or greater than 1 :10.
In some embodiments, synthetic nanocarriers are spheres or spheroids. In some embodiments, synthetic nanocarriers are flat or plate-shaped. In some embodiments, synthetic nanocarriers are cubes or cubic. In some embodiments, synthetic nanocarriers are ovals or ellipses. In some embodiments, synthetic nanocarriers are cylinders, cones, or pyramids.
It is often desirable to use a population of synthetic nanocarriers that is relatively uniform in terms of size, shape, and/or composition so that each synthetic nanocarrier has similar properties. For example, at least 80%, at least 90%, or at least 95% of the synthetic nanocarriers may have a minimum dimension or maximum dimension that falls within 5%, 10%, or 20% of the average diameter or average dimension. In some embodiments, a population of synthetic nanocarriers may be heterogeneous with respect to size, shape, and/or composition. Synthetic nanocarriers can be solid or hollow and can comprise one or more layers. In some embodiments, each layer has a unique composition and unique properties relative to the other layer(s). To give but one example, synthetic nanocarriers may have a core/shell structure, wherein the core is one layer (e.g., a polymeric core) and the shell is a second layer (e.g., a lipid bilayer or monolayer). Synthetic nanocarriers may comprise a plurality of different layers.
"T cell antigen" means any antigen that is recognized by and triggers an immune response in a T cell (e.g., an antigen that is specifically recognized by a T cell receptor on a T cell or an NKT cell via presentation of the antigen or portion thereof bound to a Class I or Class II major histocompatability complex molecule (MHC), or bound to a CDl complex). In some embodiments, an antigen that is a T cell antigen is also a B cell antigen. In other embodiments, the T cell antigen is not also a B cell antigen. T cell antigens generally are proteins or peptides. T cell antigens may be an antigen that stimulates a CD8+ T cell response, a CD4+ T cell response, or both. The T cell antigens, therefore, in some embodiments can effectively stimulate both types of responses.
In some embodiments the T cell antigen is a T-helper antigen, which is a T cell antigen that can generate an augmented response to an unrelated B cell antigen through stimulation of T cell help. In embodiments, a T-helper antigen may comprise one or more peptides derived from tetanus toxoid, Epstein-Barr virus, influenza virus, respiratory syncytial virus, measles virus, mumps virus, rubella virus, cytomegalovirus, adenovirus, diphtheria toxoid, or a PADRE peptide. In other embodiments, a T-helper antigen may comprise one or more lipids, or glycolipids, including but not limited to: α- galactosylceramide (α-GalCer), α-linked glycosphingolipids (from Sphingomonas spp.), galactosyl diacylglycerols (from Borrelia burgdorferi), lypophosphoglycan (from Leishmania donovanϊ), and phosphatidylinositol tetramannoside (PIM4) (from Mycobacterium leprae). For additional lipids and/or glycolipids useful as T-helper antigens, see V. Cerundolo et al., "Harnessing invariant NKT cells in vaccination strategies." Nature Rev Immun, 9:28-38 (2009). In embodiments, CD4+ T-cell antigens may be derivatives of a CD4+ T-cell antigen that is obtained from a source, such as a natural source. In such embodiments, CD4+ T-cell antigen sequences, such as those peptides that bind to MHC II, may have at least 70%, 80%, 90%, or 95% identity to the antigen obtained from the source. In embodiments, the T cell antigen, preferably a T-helper antigen, may be coupled to, or uncoupled from, a synthetic nanocarrier.
"Unit thereof refers to a monomeric unit of a polymer, the polymer generally being made up of a series of linked monomers.
"Vaccine" means a composition of matter that improves the immune response to a particular pathogen or disease. A vaccine typically contains factors that stimulate a subject's immune system to recognize a specific antigen as foreign and eliminate it from the subject's body. A vaccine also establishes an immunologic 'memory' so the antigen will be quickly recognized and responded to if a person is re-challenged. Vaccines can be prophylactic (for example to prevent future infection by any pathogen), or therapeutic (for example a vaccine against a tumor specific antigen for the treatment of cancer). Vaccines according to the invention may comprise one or more of the compounds, conjugates, synthetic nanocarriers, or compositions provided herein.
METHODS OF MAKING THE INVENTIVE COMPOUNDS, CONJUGATES, OR SYNTHETIC NANOCARRIERS
The immunomodulatory agent and polymers or unit thereof are coupled covalently via an amide or ester bond. In some embodiments, these conjugates form part of a synthetic nanocarrier. In general, a polymer, such as polylactide (PLA) or polylactide-co-glycolide (PLGA), can be conjugated with an immunostimulatory agent, such as resiquimod (also known as R848), in several ways. Methods for coupling are provided below and in the EXAMPLES.
The following methods or any step of the methods provided are exemplary and may be carried out under any suitable conditions. In some cases, the reaction or any step of the methods provided may be carried out in the presence of a solvent or a mixture of solvents. Non-limiting examples of solvents that may be suitable for use in the invention include, but are not limited to, /7-cresol, toluene, xylene, mesitylene, diethyl ether, glycol, petroleum ether, hexane, cyclohexane, pentane, dichloromethane (or methylene chloride), chloroform, dioxane, tetrahydrofuran (THF), dimethyl sulfoxide (DMSO), dimethylformamide (DMF), ethyl acetate (EtOAc), triethylamine, acetonitrile, methyl-/-butyl ether (MTBE), N- methylpyrrolidone (NMP), dimethylacetamide (DMAC), isopropanol (IPA), mixtures thereof, or the like. In some cases, the solvent is selected from the group consisting of ethyl acetate, methylene chloride, THF, DMF, NMP, DMAC, DMSO, and toluene, or a mixture thereof.
A reaction or any step of the methods provided may be carried out at any suitable temperature. In some cases, a reaction or any step of the methods provided is carried out at about room temperature (e.g., about 250C, about 20 0C, between about 20 0C and about 25 0C, or the like). In some cases, however, the reaction or any step of the methods provided may be carried out at a temperature below or above room temperature, for example, at about -20 0C, at about -100C, at about 0 0C, at about 10 0C, at about 300C, about 400C, about 50 0C, about 600C, about 700C, about 80 0C, about 90 0C, about 100 0C , about 120 0C, about 140 0C, about 150 0C or greater. In particular embodiments, the reaction or any step of the methods provided is conducted at temperatures between 0 0C and 120 0C. In some embodiments, the reaction or any step of the methods provided may be carried out at more than one temperature (e.g., reactants added at a first temperature and the reaction mixture agitated at a second wherein the transition from a first temperature to a second temperature may be gradual or rapid).
The reaction or any step of the methods provided may be allowed to proceed for any suitable period of time. In some cases, the reaction or any step of the methods provided is allowed to proceed for about 10 minutes, about 20 minutes, about 30 minutes, about 40 minutes, about 50 minutes, about 1 hour, about 2 hours, about 4 hours, about 8 hours, about 12 hours, about 16 hours, about 24 hours, about 2 days, about 3 days, about 4 days, or more. In some cases, aliquots of the reaction mixture may be removed and analyzed at an intermediate time to determine the progress of the reaction or any step of the methods provided. In some embodiments, a reaction or any step of the methods provided may be carried out under an inert atmosphere in anhydrous conditions (e.g., under an atmosphere of nitrogen or argon, anhydrous solvents, etc.)
The reaction products and/or intermediates may be isolated (e.g., via distillation, column chromatography, extraction, precipitation, etc.) and/or analyzed (e.g., gas liquid chromatography, high performance liquid chromatography, nuclear magnetic resonance spectroscopy, etc.) using commonly known techniques. In some cases, a conjugate or synthetic nanocarrier that includes the conjugated may be analyzed to determine the loading of immunomodulatory agent, for example, using reverse phase HPLC. The polymers may have any suitable molecular weight. For example, the polymers may have a low or high molecular weight. Non-limiting molecular weight values include 100 Da, 200 Da, 300 Da, 500 Da, 750 Da, 1000 Da, 2000 Da, 3000 Da, 4000 Da, 5000 Da, 6000 Da, 7000 Da, 8000 Da, 9000 Da, 10,000 Da, or greater. In some embodiments, the polymers have a weight average molecular weight of about 800 Da to about 10,000 Da. The molecular weight of a polymer may be determined using gel permeation chromatography.
Provided below are exemplary conjugation reactions that are not intended to be limiting.
Method 1
A polymer (e.g., PLA, PLGA) or unit thereof with at least one acid end groups is converted to a reactive acylating agent such as an acyl halide, acylimidazole, active ester, etc. using an activating reagent commonly used in amide synthesis.
In this two-step method, the resulting activated polymer or unit thereof (e.g., PLA, PLGA) is isolated and then reacted with an immunomodulatory agent (e.g., R848) in the presence of a base to give the desired conjugate (e.g., PLA-R848), for example, as shown in the following scheme:
Figure imgf000048_0001
PLA
PLA-CO2H
Figure imgf000048_0002
Activating reagents that can be used to convert polymers or units thereof, such as PLA or PLGA, to an activated acylating form include, but are not limited to cyanuric fluoride, N,N-tetramethylfluoroformamidinium hexafluorophosphate (TFFH); Acylimidazoles, such as carbonyl diimidazole (CDI), N,N'-carbonylbis(3- methylimidazolium) triflate (CBMIT); and Active esters, such as N-hydroxylsuccinimide (NHS or HOSu) in the presence of a carbodiimide such as N,N'-dicyclohexylcarbodiimide (DCC), N-ethyl-N'-(3-(dimethylamino)propyl)carbodiimide hydrochloride (EDC) or N, N1- diisopropylcarbodiimide (DIC); N,N'-disuccinimidyl carbonate (DSC); pentaflurophenol in the presence of DCC or EDC or DIC; pentafluorophenyl trifluoroacetate.
The activated polymer or unit thereof may be isolated (e.g., via precipitation, extraction, etc.) and/or stored under suitable conditions (e.g., at low temperature, under argon) following activation, or may be used immediately. The activated polymer or unit thereof may be reacted with an immunostimulatory agent under any suitable conditions. In some cases, the reaction is carried out in the presence of a base and/or catalyst. Non- limiting examples of bases/catalysts include diisopropylethylamine (DIPEA) and 4- dimethylaminopyridine (DMAP).
Method 2
A polymer or unit thereof (e.g., PLA, PLGA having any suitable molecular weight) with an acid end group reacts with an immunomodulatory agent (e.g., R848) in the presence of an activating or coupling reagent, which converts the polymer or unit thereof (e.g., PLA, PLGA) to a reactive acylating agent in situ, to give the desired conjugate (e.g., PLA-R848, PLGA-R848).
Figure imgf000049_0001
PLGA-CO2H
Coupling or activating agents include but are not limited to: activating agents used in the presence of an carbodiimide such as EDC or DCC or DIC, such as 1 - Hydroxybenzotriazole (HOBt), 1 -Hydroxy-7-azabenzotriazole (HOAt), 3,4-Dihydro-3- hydroxy-4-oxo-l,2,3-benzotriazine (HO-Dhbt), N-Hydroxysuccinimide (NHS or HOSu), Pentafluorophenol (PFP); Activating agents without carbodiimide: Phosphonium salts, such as O-Benzotriazol-l-yloxytris(dimethylamino) phosphonium hexafluorophosphate (BOP), O-Benzotriazol-l-yloxytris(pyrrolidino)phosphonium hexafluorophosphate (PyBOP), 7- Azabenzotriazol-1 -yloxytris(pyrrolidino)phosphonium hexafluorophosphate (PyAOP); uronium salts such as O-Benzotriazol-l-yloxytris-l,l,3,3-tetramethyluronium tetrafluoroborate (TBTU) and hexafluorophosphate (HBTU), O-(7-Azabenzotriazol-l-yl)- 1,1,3,3-tetramethyluronium hexafluorophosphate (HATU), O-(l,2-dihydro-2-oxo-l- pyridyl)-l,l,3,3-tetramethyl-uronium tetrafluoroborate (TPTU); Halouronium and halophosphonium salts such as bis(tetramethylene)fluoroformamidinium hexafluorophosphate (BTFFH), bromotris(dimethylamino) phosphonium hexafluorophosphate (BroP), bromotripyrrolidino phosphonium hexafluorophosphate (PyBroP) and chlorotripyrrolidino phosphonium hexafluorophosphate (PyClop); Benzotriazine derivatives such as O-(3,4-Dihydro-4-oxo-l,2,3-benzotriazine-3-yl)-N,N,N',N'- tetramethyluronium tetrafluoroborate (TDBTU) and 3-(diethyloxyphosphoryloxy)-l,2,3- benzotriazin-4(3H)-one (DEPBT). Non-limiting examples of suitable solvents include DMF, DCM, toluene, ethyl acetate, etc., as described herein.
Method 3
Immunomodulatory agents, such as R848, can also be coupled to polymers or units thereof that are terminated in a hydroxyl group. Such polymers or units thereof include polyethylene glycol, polylactide, polylactide-co-glycolide, polycaprolactone, and other like polyesters, or units thereof. In general, the reaction proceeds as follows where an imide of the general structure (IV) will react with the terminal hydroxyl of the aforementioned polymers or units thereof using a catalyst used in lactone ring opening polymerizations. The resulting reaction product (II) links the amide of the agent to the polymer or unit thereof via an ester bond. The compounds of formula (IV) and (II) are as follows:
Figure imgf000050_0001
(IV)
Figure imgf000051_0001
wherein Rj = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino; R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; R5 is a polymer or unit thereof; X is C, N, O, or S; R6 and R7 are each independently H or substituted; and R9, Ri0, Rn, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
Catalysts include, but are not limited to, phosphazine bases, 1,8-diazabicycloundec- 7-ene (DBU), 1 ^^-triazabicyclodecene (TBD), and N-methyl-l,4,7-triazabicyclodecene (MTDB). Other catalysts are known in the art and provided, for example, in Kamber et al., Organocatalytic Ring-Opening Polymerization, Chem. Rev. 2007, 107, 58-13-5840. Non- limiting examples of suitable solvents include methylene chloride, chloroform, and THF.
A specific example of a reaction completed by such a method is shown here:
Figure imgf000052_0001
wherein R5-OH contains two hydroxyl groups (e.g., a diol, HO-R5-OH), each of which are functionalized by reaction with an imide associated with R848. In some cases, HO-R5-OH is a poly-diol such as poly(hexamethyl carbonate) diol or polycaprolactone diol. For example, the reaction may be carried out as follows:
catalyst
Figure imgf000052_0002
Figure imgf000052_0003
wherein the R groups are as described herein. Non-limiting examples of suitable polymers include polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co- poly(ethylene)glycol, diblock polylactide/polyglycolide-co-poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran).
In embodiments where a poly-diol is employed, one of the diol groups may be protected with a protecting group (e.g., t-butyloxycarbonyl), thus the poly-diol would be a compound of formula HO-R5-OP, wherein P is a protecting group. Following reaction with an immunomodulatory agent to form a immunomodulatory agent-Rs-OP conjugate, the protecting group may be removed and the second diol group may be reacted with any suitable reagent (e.g., PLGA, PLA).
Method 4
A conjugate (e.g., R848-PLA) can be formed via a one-pot ring-opening polymerization of an immunomodulatory agent (e.g., R848) with a polymer or unit thereof (e.g., D/L-lactide) in the presence of a catalyst, for example, as shown in the following scheme:
Figure imgf000053_0001
R848 dl-lactide R848-PLA (R848 loading 3 mg/g) In a one-step procedure, the immunomodulatory agent and the polymer or unit thereof may be combined into a single reaction mixture comprising a catalyst. The reaction may proceed at a suitable temperature (e.g., at about 150 0C) and the resulting conjugate may be isolated using commonly known techniques. Non-limiting examples of suitable catalysts include DMAP and tin ethylhexanoate.
Method 5
A conjugate can be formed via two-step ring opening polymerization of an immunomodulatory agent (e.g., R848) with one or more polymers or units thereof (e.g., D/L-lactide and glycolide) in the presence of a catalyst, for example, as shown in the following scheme:
Figure imgf000053_0002
The polymers or units thereof may be first combined, and in some cases, heated (e.g., to 135 0C) to form a solution. The immunomodulatory agent may be added to a solution comprising the polymers or units thereof, followed by addition of a catalyst (e.g., tin ethylhexanoate). The resulting conjugate may be isolated using commonly known techniques. Non-limiting examples of suitable catalysts include DMAP and tin ethylhexanoate.
In some embodiments, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be covalently associated with a polymeric matrix. In some embodiments, covalent association is mediated by a linker. In some embodiments, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be noncovalently associated with a polymeric matrix. For example, in some embodiments, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be encapsulated within, surrounded by, and/or dispersed throughout a polymeric matrix. Alternatively or additionally, a compound or conjugate provided herein, another immunomodulatory agent, antigen, and/or targeting moiety can be associated with a polymeric matrix by hydrophobic interactions, charge interactions, van der Waals forces, etc.
A wide variety of polymers and methods for forming polymeric matrices therefrom are known conventially. In general, a polymeric matrix comprises one or more polymers. Polymers may be natural or unnatural (synthetic) polymers. Polymers may be homopolymers or copolymers comprising two or more monomers. In terms of sequence, copolymers may be random, block, or comprise a combination of random and block sequences. Typically, polymers in accordance with the present invention are organic polymers.
Examples of polymers suitable for use in the present invention include, but are not limited to polyethylenes, polycarbonates (e.g., poly(l,3-dioxan-2one)), polyanhydrides (e.g., poly(sebacic anhydride)), polyhydroxyacids (e.g., poly(β-hydroxyalkanoate)), polypropylfumerates, polycaprolactones, polyamides (e.g., polycaprolactam), polyacetals, polyethers, polyesters (e.g., polylactide, polyglycolide), poly(orthoesters), polycyanoacrylates, polyvinyl alcohols, polyurethanes, polyphosphazenes, polyacrylates, polymethacrylates, polyureas, polystyrenes, polyamines, and polysaccharides (e.g., chitosan).
In some embodiments, polymers in accordance with the present invention include polymers which have been approved for use in humans by the U.S. Food and Drug Administration (FDA) under 21 C.F.R. § 177.2600, including but not limited to polyesters (e.g., polylactic acid, poly(lactic-co-glycolic acid), polycaprolactone, polyvalerolactone, poly(l,3-dioxan-2one)); polyanhydrides (e.g., poly(sebacic anhydride)); polyethers (e.g., polyethylene glycol); polyurethanes; polymethacrylates; polyacrylates; and polycyanoacrylates.
In some embodiments, polymers can be hydrophilic. For example, polymers may comprise anionic groups (e.g., phosphate group, sulphate group, carboxylate group); cationic groups (e.g., quaternary amine group); or polar groups (e.g., hydroxyl group, thiol group, amine group). In some embodiments, a synthetic nanocarrier comprising a hydrophilic polymeric matrix generates a hydrophilic environment within the synthetic nanocarrier. In some embodiments, polymers can be hydrophobic. In some embodiments, a synthetic nanocarrier comprising a hydrophobic polymeric matrix generates a hydrophobic environment within the synthetic nanocarrier. Selection of the hydrophilicity or hydrophobicity of the polymer may have an impact on the nature of materials that are incorporated (e.g., coupled) within the synthetic nanocarrier.
In some embodiments, polymers may be modified with one or more moieties and/or functional groups. A variety of moieties or functional groups can be used in accordance with the present invention. In some embodiments, polymers may be modified with PEG, with a carbohydrate, and/or with acyclic polyacetals derived from polysaccharides (Papisov, 2001, ACS Symposium Series, 786:301).
In some embodiments, polymers may be modified with a lipid or fatty acid group. In some embodiments, a fatty acid group may be one or more of butyric, caproic, caprylic, capric, lauric, myristic, palmitic, stearic, arachidic, behenic, or lignoceric acid. In some embodiments, a fatty acid group may be one or more of palmitoleic, oleic, vaccenic, linoleic, alpha-linoleic, gamma-linoleic, arachidonic, gadoleic, arachidonic, eicosapentaenoic, docosahexaenoic, or erucic acid.
In some embodiments, polymers may be polyesters, including copolymers comprising lactic acid and glycolic acid units, such as poly(lactic acid-co-glycolic acid) and poly(lactide-co-glycolide), collectively referred to herein as "PLGA"; and homopolymers comprising glycolic acid units, referred to herein as "PGA," and lactic acid units, such as poly-L-lactic acid, poly-D-lactic acid, poly-D,L-lactic acid, poly-L-lactide, poly-D-lactide, and poly-D,L-lactide, collectively referred to herein as "PLA." In some embodiments, exemplary polyesters include, for example, polyhydroxyacids; PEG copolymers and copolymers of lactide and glycolide (e.g., PLA-PEG copolymers, PGA-PEG copolymers, PLGA-PEG copolymers, and derivatives thereof. In some embodiments, polyesters include, for example, polyanhydrides, poly(ortho ester), poly(ortho ester)-PEG copolymers, poly(caprolactone), poly(caprolactone)-PEG copolymers, polylysine, polylysine-PEG copolymers, poly(ethyleneimine), poly(ethylene imine)-PEG copolymers, poly(L-lactide- co-L-lysine), poly(serine ester), poly(4-hydroxy-L-proline ester), poly[α-(4-aminobutyl)-L- glycolic acid], and derivatives thereof.
In some embodiments, a polymer may be PLGA. PLGA is a biocompatible and biodegradable co-polymer of lactic acid and glycolic acid, and various forms of PLGA are characterized by the ratio of lactic acid:glycolic acid. Lactic acid can be L-lactic acid, D- lactic acid, or D,L-lactic acid. The degradation rate of PLGA can be adjusted by altering the lactic acid:glycolic acid ratio. In some embodiments, PLGA to be used in accordance with the present invention is characterized by a lactic acid:glycolic acid ratio of approximately 85:15, approximately 75:25, approximately 60:40, approximately 50:50, approximately 40:60, approximately 25:75, or approximately 15:85.
In some embodiments, polymers may be one or more acrylic polymers. In certain embodiments, acrylic polymers include, for example, acrylic acid and methacrylic acid copolymers, methyl methacrylate copolymers, ethoxyethyl methacrylates, cyanoethyl methacrylate, aminoalkyl methacrylate copolymer, poly(acrylic acid), poly(methacrylic acid), methacrylic acid alkylamide copolymer, poly(methyl methacrylate), poly(methacrylic acid anhydride), methyl methacrylate, polymethacrylate, poly(methyl methacrylate) copolymer, polyacrylamide, aminoalkyl methacrylate copolymer, glycidyl methacrylate copolymers, polycyanoacrylates, and combinations comprising one or more of the foregoing polymers. The acrylic polymer may comprise fully-polymerized copolymers of acrylic and methacrylic acid esters with a low content of quaternary ammonium groups.
In some embodiments, polymers can be cationic polymers. In general, cationic polymers are able to condense and/or protect negatively charged strands of nucleic acids (e.g., DNA, RNA, or derivatives thereof). Amine-containing polymers such as poly(lysine) (Zauner et al., 1998, Adv. Drug Del. Rev., 30:97; and Kabanov et al., 1995, Bioconjugate Chem., 6:7), polyethylene imine) (PEI; Boussif et al., 1995, Proc. Natl. Acad. Sci., USA, 1995, 92:7297), and poly(amidoamine) dendrimers (Kukowska-Latallo et al., 1996, Proc. Natl. Acad. Sci., USA, 93:4897; Tang et al., 1996, Bioconjugate Chem., 7:703; and Haensler et al., 1993, Bioconjugate Chem., 4:372) are positively-charged at physiological pH, form ion pairs with nucleic acids, and mediate transfection in a variety of cell lines.
In some embodiments, polymers can be degradable polyesters bearing cationic side chains (Putnam et al., 1999, Macromolecules, 32:3658; Barrera et al., 1993, J. Am. Chem. Soc, 115:1 1010; Kwon et al., 1989, Macromolecules, 22:3250; Lim et al., 1999, J. Am. Chem. Soc, 121 :5633; and Zhou et al., 1990, Macromolecules, 23:3399). Examples of these polyesters include poly(L-lactide-co-L-lysine) (Barrera et al., 1993, J. Am. Chem. Soc, 115:11010), poly(serine ester) (Zhou et al., 1990, Macromolecules, 23:3399), poly(4- hydroxy-L-proline ester) (Putnam et al., 1999, Macromolecules, 32:3658; and Lim et al., 1999, J. Am. Chem. Soc, 121 :5633), and poly(4-hydroxy-L-proline ester) (Putnam et al.,
1999, Macromolecules, 32:3658; and Lim et al., 1999, J. Am. Chem. Soc, 121 :5633).
The properties of these and other polymers and methods for preparing them are well known in the art (see, for example, U.S. Patents 6,123,727; 5,804,178; 5,770,417; 5,736,372; 5,716,404; 6,095,148; 5,837,752; 5,902,599; 5,696,175; 5,514,378; 5,512,600; 5,399,665; 5,019,379; 5,010,167; 4,806,621; 4,638,045; and 4,946,929; Wang et al., 2001, J. Am. Chem. Soc, 123:9480; Lim et al., 2001, J. Am. Chem. Soc, 123:2460; Langer,
2000, Ace Chem. Res., 33:94; Langer, 1999, J. Control. Release, 62:7; and Uhrich et al., 1999, Chem. Rev., 99:3181). More generally, a variety of methods for synthesizing certain suitable polymers are described in Concise Encyclopedia of Polymer Science and Polymeric Amines and Ammonium Salts, Ed. by Goethals, Pergamon Press, 1980; Principles of Polymerization by Odian, John Wiley & Sons, Fourth Edition, 2004; Contemporary Polymer Chemistry by Allcock et al., Prentice-Hall, 1981; Deming et al., 1997, Nature, 390:386; and in U.S. Patents 6,506,577, 6,632,922, 6,686,446, and 6,818,732.
In some embodiments, polymers can be linear or branched polymers. In some embodiments, polymers can be dendrimers. In some embodiments, polymers can be substantially cross-linked to one another. In some embodiments, polymers can be substantially free of cross-links. In some embodiments, polymers can be used in accordance with the present invention without undergoing a cross-linking step. It is further to be understood that inventive compounds and synthetic nanocarriers may comprise block copolymers, graft copolymers, blends, mixtures, and/or adducts of any of the foregoing and other polymers. Those skilled in the art will recognize that the polymers listed herein represent an exemplary, not comprehensive, list of polymers that can be of use in accordance with the present invention.
In some embodiments, synthetic nanocarriers may comprise metal particles, quantum dots, ceramic particles, etc.
In some embodiments, synthetic nanocarriers may optionally comprise one or more amphiphilic entities. In some embodiments, an amphiphilic entity can promote the production of synthetic nanocarriers with increased stability, improved uniformity, or increased viscosity. In some embodiments, amphiphilic entities can be associated with the interior surface of a lipid membrane (e.g., lipid bilayer, lipid monolayer, etc.). Many amphiphilic entities known in the art are suitable for use in making synthetic nanocarriers in accordance with the present invention. Such amphiphilic entities include, but are not limited to, phosphoglycerides; phosphatidylcholines; dipalmitoyl phosphatidylcholine (DPPC); dioleylphosphatidyl ethanolamine (DOPE); dioleyloxypropyltriethylammonium (DOTMA); dioleoylphosphatidylcholine; cholesterol; cholesterol ester; diacylglycerol; diacylglycerolsuccinate; diphosphatidyl glycerol (DPPG); hexanedecanol; fatty alcohols such as polyethylene glycol (PEG); polyoxyethylene-9-lauryl ether; a surface active fatty acid, such as palmitic acid or oleic acid; fatty acids; fatty acid monoglycerides; fatty acid diglycerides; fatty acid amides; sorbitan trioleate (Span®85) glycocholate; sorbitan monolaurate (Span®20); polysorbate 20 (Tween®20); polysorbate 60 (Tween®60); polysorbate 65 (Tween®65); polysorbate 80 (Tween®80); polysorbate 85 (Tween®85); polyoxyethylene monostearate; surfactin; a poloxomer; a sorbitan fatty acid ester such as sorbitan trioleate; lecithin; lysolecithin; phosphatidylserine; phosphatidylinositol; sphingomyelin; phosphatidylethanolamine (cephalin); cardiolipin; phosphatidic acid; cerebrosides; dicetylphosphate; dipalmitoylphosphatidylglycerol; stearylamine; dodecylamine; hexadecyl-amine; acetyl palmitate; glycerol ricinoleate; hexadecyl sterate; isopropyl myristate; tyloxapol; poly(ethylene glycol)5000-phosphatidylethanolamine; poly(ethylene glycol)400-monostearate; phospholipids; synthetic and/or natural detergents having high surfactant properties; deoxycholates; cyclodextrins; chaotropic salts; ion pairing agents; and combinations thereof. An amphiphilic entity component may be a mixture of different amphiphilic entities. Those skilled in the art will recognize that this is an exemplary, not comprehensive, list of substances with surfactant activity. Any amphiphilic entity may be used in the production of synthetic nanocarriers to be used in accordance with the present invention.
In some embodiments, synthetic nanocarriers may optionally comprise one or more carbohydrates. Carbohydrates may be natural or synthetic. A carbohydrate may be a derivatized natural carbohydrate. In certain embodiments, a carbohydrate comprises monosaccharide or disaccharide, including but not limited to glucose, fructose, galactose, ribose, lactose, sucrose, maltose, trehalose, cellbiose, mannose, xylose, arabinose, glucoronic acid, galactoronic acid, mannuronic acid, glucosamine, galatosamine, and neuramic acid. In certain embodiments, a carbohydrate is a polysaccharide, including but not limited to pullulan, cellulose, microcrystalline cellulose, hydroxypropyl methylcellulose (HPMC), hydroxycellulose (HC), methylcellulose (MC), dextran, cyclodextran, glycogen, starch, hydroxyethylstarch, carageenan, glycon, amylose, chitosan, N,O- carboxylmethylchitosan, algin and alginic acid, starch, chitin, heparin, konjac, glucommannan, pustulan, heparin, hyaluronic acid, curdlan, and xanthan. In certain embodiments, the carbohydrate is a sugar alcohol, including but not limited to mannitol, sorbitol, xylitol, erythritol, maltitol, and lactitol.
Synthetic nanocarriers may be prepared using a wide variety of methods known in the art. For example, synthetic nanocarriers can be formed by methods as nanoprecipitation, flow focusing using fluidic channels, spray drying, single and double emulsion solvent evaporation, solvent extraction, phase separation, milling, microemulsion procedures, microfabrication, nanofabrication, sacrificial layers, simple and complex coacervation, and other methods well known to those of ordinary skill in the art. Alternatively or additionally, aqueous and organic solvent syntheses for monodisperse semiconductor, conductive, magnetic, organic, and other nanomaterials have been described (Pellegrino et al., 2005, Small, 1 :48; Murray et al., 2000, Ann. Rev. Mat. Sci., 30:545; and Trindade et al., 2001, Chem. Mat., 13:3843). Additional methods have been described in the literature (see, e.g., Doubrow, Ed., "Microcapsules and Nanoparticles in Medicine and Pharmacy," CRC Press, Boca Raton, 1992; Mathiowitz et al., 1987, J. Control. Release, 5:13; Mathiowitz et al., 1987, Reactive Polymers, 6:275; and Mathiowitz et al., 1988, J. Appl. Polymer Sci., 35:755, and also US Patents 5578325 and 6007845).
In certain embodiments, synthetic nanocarriers are prepared by a nanoprecipitation process or spray drying. Conditions used in preparing synthetic nanocarriers may be altered to yield particles of a desired size or property (e.g., hydrophobicity, hydrophilicity, external morphology, "stickiness," shape, etc.). The method of preparing the synthetic nanocarriers and the conditions (e.g., solvent, temperature, concentration, air flow rate, etc.) used may depend on the materials to be coupled to the synthetic nanocarriers and/or the composition of the polymer matrix.
If particles prepared by any of the above methods have a size range outside of the desired range, particles can be sized, for example, using a sieve.
Coupling can be achieved in a variety of different ways, and can be covalent or non- covalent. Such couplings may be arranged to be on a surface or within an inventive synthetic nanocarrier. Elements of the inventive synthetic nanocarriers (such as moieties of which an immunofeature surface is comprised, targeting moieties, polymeric matrices, and the like) may be directly coupled with one another, e.g., by one or more covalent bonds, or may be coupled by means of one or more linkers. Additional methods of functionalizing synthetic nanocarriers may be adapted from Published US Patent Application 2006/0002852 to Saltzman et al., Published US Patent Application 2009/0028910 to DeSimone et al., or Published International Patent Application WO/2008/127532 Al to Murthy et al.
Any suitable linker can be used in accordance with the present invention. Linkers may be used to form amide linkages, ester linkages, disulfide linkages, etc. Linkers may contain carbon atoms or heteroatoms (e.g., nitrogen, oxygen, sulfur, etc.). In some embodiments, a linker is an aliphatic or heteroaliphatic linker. In some embodiments, the linker is a polyalkyl linker. In certain embodiments, the linker is a polyether linker. In certain embodiments, the linker is a polyethylene linker. In certain specific embodiments, the linker is a polyethylene glycol (PEG) linker.
In some embodiments, the linker is a cleavable linker. To give but a few examples, cleavable linkers include protease cleavable peptide linkers, nuclease sensitive nucleic acid linkers, lipase sensitive lipid linkers, glycosidase sensitive carbohydrate linkers, pH sensitive linkers, hypoxia sensitive linkers, photo-cleavable linkers, heat-labile linkers, enzyme cleavable linkers (e.g., esterase cleavable linker), ultrasound-sensitive linkers, x-ray cleavable linkers, etc. In some embodiments, the linker is not a cleavable linker.
A variety of methods can be used to couple a linker or other element of a synthetic nanocarrier with the synthetic nanocarrier. General strategies include passive adsorption (e.g., via electrostatic interactions), multivalent chelation, high affinity non-covalent binding between members of a specific binding pair, covalent bond formation, etc. (Gao et al., 2005, Curr. Op. Biotechnol., 16:63). In some embodiments, click chemistry can be used to associate a material with a synthetic nanocarrier.
Non-covalent specific binding interactions can be employed. For example, either a particle or a biomolecule can be functionalized with biotin with the other being functionalized with streptavidin. These two moieties specifically bind to each other noncovalently and with a high affinity, thereby associating the particle and the biomolecule. Other specific binding pairs could be similarly used. Alternately, histidine-tagged biomolecules can be associated with particles conjugated to nickel-nitrolotriaceteic acid (Ni-NTA).
For additional general information on coupling, see the journal Bioconjugate Chemistry, published by the American Chemical Society, Columbus OH, PO Box 3337, Columbus, OH, 43210; "Cross-Linking," Pierce Chemical Technical Library, available at the Pierce web site and originally published in the 1994-95 Pierce Catalog, and references cited therein; Wong SS, Chemistry of Protein Conjugation and Cross-linking, CRC Press Publishers, Boca Raton, 1991; and Hermanson, G. T., Bioconjugate Techniques, Academic Press, Inc., San Diego, 1996.
It is to be understood that the compositions of the invention can be made in any suitable manner, and the invention is in no way limited to compositions that can be produced using the methods described herein. Selection of an appropriate method may require attention to the properties of the particular moieties being associated.
PHARMACEUTICAL COMPOSITIONS AND METHODS OF USE
Compositions according to the invention comprise inventive compounds, conjugates, or synthetic nanocarriers, optionally, in combination with pharmaceutically acceptable excipients. The compositions may be made using conventional pharmaceutical manufacturing and compounding techniques to arrive at useful dosage forms. In an embodiment, inventive compounds, conjugates, synthetic nanocarriers, or compositions are suspended in sterile saline solution for injection together with a preservative.
In some embodiments, inventive compounds, conjugates, synthetic nanocarriers, or compositions are manufactured under sterile conditions or are terminally sterilized. This can ensure that resulting compositions are sterile and non-infectious, thus improving safety when compared to non-sterile compositions. This provides a valuable safety measure, especially when subjects receiving inventive compounds, conjugates, synthetic nanocarriers, or compositions have immune defects, are suffering from infection, and/or are susceptible to infection. In some embodiments, inventive compounds, conjugates, synthetic nanocarriers, or compositions may be lyophilized and stored in suspension or as lyophilized powder depending on the formulation strategy for extended periods without losing activity.
The inventive compounds, conjugates, synthetic nanocarriers, or compositions may be administered by a variety of routes of administration, including but not limited to parenteral, subcutaneous, intramuscular, intradermal, oral, intranasal, transmucosal, rectal; ophthalmic, transdermal, transcutaneous or by a combination of these routes.
The inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can be used to induce, enhance, stimulate, modulate, or direct an immune response. The inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can be used in the diagnosis, prophylaxis and/or treatment of conditions such as cancers, infectious diseases, metabolic diseases, degenerative diseases, inflammatory diseases, immunological diseases, or other disorders and/or conditions. The inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can also be used for the prophylaxis or treatment of an addiction, such as an addiction to nicotine or a narcotic. The inventive compounds, conjugates, synthetic nanocarriers, or compositions and methods described herein can also be used for the prophylaxis and/or treatment of a condition resulting from the exposure to a toxin, hazardous substance, environmental toxin, or other harmful agent.
EXAMPLES
Example 1: One-Pot Ring-Opening Polymerization Of R848 With D/L-Lactide In The Presence Of A Catalyst
Figure imgf000062_0001
R848 dl-lactide R848-PLA (R848 loading 3 mg/g) A mixture of R848 (0.2 mmol, 63 mg), D/L-lactide (40 mmol, 5.8 g), and 4- dimethylaminopyridine (DMAP) (50 mg, 0.4 mmol) in 2 mL of anhydrous toluene was heated slowly to 150 0C (oil bath temperature) and maintained at this temperature for 18 h (after 3 hr, no R848 was left). The mixture was cooled to ambient temperature and the resulting mixture was quenched with water (50 mL) to precipitate out the resulting polymer, R848-PLA. The polymer was then washed sequentially with 45 mL each of MeOH, iPrOH, and ethyl ether. The polymer was dried under vacuum at 300C to give an off-white puffy solid (5.0 g). Polymeric structure was confirmed by 1H NMR in CDCl3. A small sample of the polymer was treated with 2 N NaOH aq in THF/MeOH to determine the loading of R848 on the polymer by reverse phase HPLC. The loading of R848 is 3 mg per gram of polymer (0.3% loading - 27.5% of theory).
Example 2: Two Step Ring Opening Polymerization Of R848 With D/L-Lactide And Glycolide
A mixture of D/L-lactide (10.8 g, 0.075 moles) and glycolide (2.9 g, 0.025 moles) was heated to 135 0C under argon. Once all of the materials had melted and a clear solution had resulted, R848 (1.08 g, 3.43 X 10'3 moles) was added. This solution was stirred at 135 °C under a slow stream of argon for one hour. Tin ethylhexanoate (150 μL) was added and heating was continued for 4 hours. After cooling, the solid pale brown mass was dissolved in methylene chloride (250 mL) and the solution was washed with 5% tartaric acid solution (2 x 200 mL). The methylene chloride solution was dried over magnesium sulfate, filtered, and then concentrated under vacuum. The residue was dissolved in methylene chloride (20 mL) and 2-propanol (250 mL) was added with stirring. The polymer that separated was isolated by decantation of the 2-propanol and was dried under high vacuum. NMR showed that the polymer was 71.4% lactide and 28.6% glycolide with a molecular weight of 4000. The loading of R848 was close to theoretical by NMR.
Example 3: Preparation Of PLGA-R848 Conjugate
Figure imgf000064_0001
A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 10 g, 7.0 mmol) and HBTU (5.3 g, 14 mmol) in anhydrous EtOAc (160 mL) was stirred at room temperature under argon for 50 minutes. Compound R848 (2.2 g, 7 mmol) was added, followed by diisopropylethylamine (DIPEA) (5 mL, 28 mmol). The mixture was stirred at room temperature for 6 h and then at 50-55 0C overnight (about 16 h). After cooling, the mixture was diluted with EtOAc (200 mL) and washed with saturated NH4Cl solution (2 x 40 mL), water (40 mL) and brine solution (40 mL). The solution was dried over Na2SO4 (20 g) and concentrated to a gel-like residue. Isopropyl alcohol (IPA) (300 mL) was then added and the polymer conjugate precipitated out of solution. The polymer was then washed with IPA (4 x 50 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 3 days as a white powder (10.26 g, MW by GPC is 5200, R848 loading is 12% by HPLC).
Example 4: Preparation Of PLGA-854A Conjugate
Figure imgf000064_0002
A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1 A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (20 mL) was stirred at room temperature under argon for 45 minutes. Compound 845A (0.29 g, 0.7 mmol) was added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture was stirred at room temperature for 6 h and then at 50-55 0C overnight (about 15 h). After cooling, the mixture was diluted with EtOAc (100 mL) and washed with saturated NH4C1 solution (2 x 20 mL), water (20 mL) and brine solution (20 mL). The solution was dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Isopropyl alcohol (IPA) (40 mL) was then added and the polymer conjugate precipitated out of solution. The polymer was then washed with IPA (4 x 25 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 2 days as a white powder (1.21 g, MW by GPC is 4900, 854A loading is 14% by HPLC).
Example 5: Preparation Of PLGA-BBHA Conjugate
Figure imgf000065_0001
A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (30 mL) was stirred at room temperature under argon for 30 minutes. Compound BBHA (0.22 g, 0.7 mmol) in 2 mL of dry DMSO was added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture was stirred at room temperature for 20 h. Additional amounts of HBTU (0.53 g, 1.4 mmol) and DIPEA (0.5 mL, 2.8 mmol) were added and the mixture was heated at 50-55 0C for 4 h. After cooling, the mixture was diluted with EtOAc (100 mL) and washed with saturated NH4C1 solution 20 mL), water (2 x 20 mL) and brine solution (20 mL). The solution was dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Isopropyl alcohol (IPA) (35 mL) was then added and the brownish polymer conjugate precipitated out of solution. The polymer was then washed with IPA (2 x 20 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 2 days as a brownish powder (1.1 g).
Example 6: Preparation Of Low MW PLA-R848 Conjugate
Figure imgf000065_0003
PLA-CO2H
Figure imgf000065_0002
A solution of PLA-CO2H (average MW: 950, DPI: 1.32; 5.0 g, 5.26 mmol) and HBTU (4.0 g, 10.5 mmol) in EtOAc (120 mL) was stirred at room temperature under argon for 45 min. Compound R848 (1.65 g, 5.26 mmol) was added, followed by DIPEA (5.5 mL, 31.6 mmol). The mixture was stirred at room temperature for 6 h and then at 50-55 0C for 15 h. After cooling, the mixture was diluted with EtOAc (150 mL) and washed with 1% citric acid solution (2x40 mL), water (40 mL) and brine solution (40 mL). The solution was dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Methyl /-butyl ether (MTBE) (150 mL) was then added and the polymer conjugate precipitated out of solution. The polymer was then washed with MTBE (50 mL) and dried under vacuum at room temperature for 2 days as a white foam (5.3 g, average MW by GPC is 1200, PDI: 1.29; R848 loading is 20% by HPLC).
Example 7: Preparation Of Low MW PLA-R848 Conjugate
Figure imgf000066_0001
A solution of PLA-CO2H (average MW: 1800, DPI: 1.44; 9.5 g, 5.26 mmol) and HBTU (4.0 g, 10.5 mmol) in EtOAc (120 mL) was stirred at room temperature under argon for 45 min. Compound R848 (1.65 g, 5.26 mmol) was added, followed by DIPEA (5.5 mL, 31.6 mmol). The mixture was stirred at room temperature for 6 h and then at 50-55 0C for 15 h. After cooling, the mixture was diluted with EtOAc (150 mL) and washed with 1% citric acid solution (2 x 40 mL), water (40 mL) and brine solution (40 mL). The solution was dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Methyl t-butyl ether (MTBE) (150 mL) was then added and the polymer conjugate precipitated out of solution. The polymer was then washed with MTBE (50 mL) and dried under vacuum at room temperature for 2 days as a white foam (9.5 g, average MW by GPC is 1900, PDI: 1.53; R848 loading is 17% by HPLC).
Example 8: Conjugation Of R848 To PCADK Via Imide Ring Opening The following examples describes the synthesis of a polyketal, PCADK, according to a method provided in Pulendran et al, WO 2008/127532, illustrated in step 1 below.
PCADK is synthesized in a 50 mL two-necked flask, connected to a short-path distilling head. First, 5.5 mg of re-crystallized p-toluenesulfonic acid (0.029 mmol, Aldrich, St. Louis, MO), is dissolved in 6.82 mL of ethyl acetate, and added to a 30 mL benzene solution (kept at 1000C), which contains 1 ,4-cyclohexanedimethanol (12.98 g, 90.0 mmol, Aldrich). The ethyl acetate is allowed to boil off, and distilled 2,2-dimethoxypropane (10.94 mL, 90.0 mmol, Aldrich) is added to the benzene solution, initiating the polymerization reaction. Additional doses of 2,2-dimethoxypropane (5 mL) and benzene (25 mL) are subsequently added to the reaction every hour for 6 hours via a metering funnel to compensate for 2,2-dimethoxypropane and benzene that is distilled off. After 8 hours, the reaction is stopped by addition of 500 μL of triethylamine. The polymer is isolated by precipitation in cold hexane (stored at -2O0C) followed by vacuum filtration. The molecular weight of PCADK is determined by gel permeation chromatography (GPC) (Shimadzu, Kyoto, Japan) equipped with a UV detector. THF is used as the mobile phase at a flow rate of 1 ml/min. Polystyrene standards from Polymer Laboratories (Amherst, MA) are used to establish a molecular weight calibration curve. This compound is used to generate the PCADK particles in all subsequent experiments.
R848 may be conjugated to the terminal alcohol groups of the PCADK having molecular weight 6000 via imide ring opening, according to the step 2 shown below.
Step 1 : Preparation of PCADK
Figure imgf000067_0001
Step 2: Conjugation of PCADK to R848
Figure imgf000068_0001
Figure imgf000068_0002
In step 2, the polymer from step 1 (12 g, 2.0 x 10"3 moles) is dissolved in methylene chloride 100 mL, and the lactam of R848 (3.3 g, 8.0 x 10"3 moles) is added. This slurry is stirred as l,5,7-triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.835 g, 6 X 10'3 moles) is added in a single portion. After stirring at room temperature overnight, a clear solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 1 1.3 grams (81%) of polymer. A portion is hydrolyzed in acid and the R848 content is determined to be 9% by weight.
Example 9: Conjugation Of R848 To Poly-Caprolactonediol Via Imide Ring Opening
Imide ring opening is used to attach R854 to the terminal alcohol groups of poly- caprolactonediol of molecular weight 2000. The polycaprolactone diol is purchased from Aldrich Chemical Company, Cat. #189421, and has the following structure:
Figure imgf000068_0003
The polycaprolactone diol-R854 conjugate has the following structure:
Figure imgf000068_0004
The polymer (5 g, 2.5 x 10'3 moles) is dissolved in methylene chloride 25 mL and the lactam of R854 (2.4 g, 5.0 x 10"3 moles) is added. This slurry is stirred as 1,5,7- triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 X 10"3 moles) is added in a single portion. After stirring at room temperature for 15 minutes, a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 5.2 grams (70%) of polymer. A portion is hydrolyzed in acid and the R848 content is determined to be 18.5% by weight.
Example 10: Conjugation Of R848 To Poly-(Hexamethylene Carbonate)Diol Via Imide Ring Opening
Imide ring opening is used to attach R848 to the terminal alcohol groups of poly- (hexamethylene carbonate)diol of molecular weight 2000. The poly(hexamethylene carbonate) diol is purchased from Aldrich Chemical Company, Cat # 461164, and has the following structure:
HO— [CH2(CH2)4CH2θCθ2]nCH2(CH2)4CH2-OH
The poly(hexamethylene carbonate) diol-R848 conjugate has the following structure:
Figure imgf000069_0001
The polymer (5 g, 2.5 x 10 moles) is dissolved in methylene chloride 25 mL and the lactam of R848 (2.06 g, 5.0 X 10"3 moles) is added. This slurry is stirred as 1,5,7- triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 X 10"3 moles) is added in a single portion. After stirring at room temperature overnight a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL) and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 5.9 grams (84%) of polymer. NMR is used to determine the R848 content which is determined to be 21%. Example 11: Polylactic Acid Conjugates Of An Imidazoquinoline Using A Tin Ethylhexanoate Catalyst
Figure imgf000070_0001
To a two necked round bottom flask equipped with a stir bar and condenser was added the imidazoquinoline resiquimod (R-848, 100 mg, 3.18 X 10"4 moles), D/L lactide (5.6 g, 3.89 X 10"2 moles) and anhydrous sodium sulfate (4.0 g). The flask and contents were dried under vacuum at 50 °C for 8 hours. The flask was then flushed with argon and toluene (100 mL) was added. The reaction was stirred in an oil bath set at 120 °C until all of the lactide had dissolved and then tin ethylhexanoate (75 mg, 60 μL) was added via pipette. Heating was continued under argon for 16 hours. After cooling, water (20 mL) was added and stirring was continued for 30 minutes. The reaction was diluted with additional toluene (200 mL) and was then washed with water (200 mL). The toluene solution was then washed in turn with 10% sodium chloride solution containing 5% cone. Hydrochloric acid (200 mL) followed by saturated sodium bicarbonate (200 mL). TLC (silica, 10% methanol in methylene chloride) showed that the solution contained no free R-848. The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give 3.59 grams of polylactic acid-R-848 conjugate. A portion of the polymer was hydrolyzed in base and examined by HPLC for R-848 content. By comparison to a standard curve of R-848 concentration vs. HPLC response, it was determined that the polymer contained 4.51 mg of R-848 per gram of polymer. The molecular weight of the polymer was determined by GPC to be about 19,000.
Example 12: Low Molecular Weight Polylactic Acid Conjugates Of An Imidazoquinoline
Figure imgf000070_0002
To a round bottom flask equipped with a stir bar and condenser was added the imidazoquinoline, resiquimod (R-848, 218 mg, 6.93 X 10"4 moles), D/L lactide (1.0 g, 6.93 X 10'3 moles) and anhydrous sodium sulfate (800 mg). The flask and contents were dried under vacuum at 55 °C for 8 hours. After cooling, the flask was then flushed with argon and toluene (50 mL) was added. The reaction was stirred in an oil bath set at 120 °C until all of the lactide had dissolved and then tin ethylhexanoate (19 mg, 15μL) was added via pipette. Heating was continued under argon for 16 hours. After cooling, the reaction was diluted with ether (200 mL) and the solution was washed with water (200 mL). The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give 880 mg. of crude polylactic acid-R-848 conjugate. The crude polymer was chromatographed on silica using 10% methanol in methylene chloride as eluent. The fractions containing the conjugate were pooled and evaporated to give the purified conjugate. This was dried under high vacuum to provide the conjugate as a solid foam in a yield of 702 mg (57.6%). By integrating the NMR signals for the aromatic protons of the quinoline and comparing this to the integrated intensity of the lactic acid CH proton it was determined that the molecular weight of the conjugate was approximately 2KD. GPC showed that the conjugate contained less than 5% of free R848.
Example 13: Low Molecular Weight Polylactic Acid Co-Glycolic Acid Conjugates Of An Imidazoquinoline
Figure imgf000071_0001
To a round bottom flask equipped with a stir bar and condenser was added the imidazoquinoline, resiquimod (R-848, 436 mg, 1.39 X 10"3 moles), glycolide (402 mg, 3.46 X 10"3 moles), D/L lactide (2.0 g, 1.39 X 10"2 moles) and anhydrous sodium sulfate (1.6 g). The flask and contents were dried under vacuum at 55 °C for 8 hours. After cooling, the flask was then flushed with argon and toluene (60 mL) was added. The reaction was stirred in an oil bath set at 120°C until all of the R848, glycolide and lactide had dissolved and then tin ethylhexanoate (50 mg, 39 μL) was added via pipette. Heating was continued under argon for 16 hours. After cooling, the reaction was diluted with ethyl acetate (200 mL) and the solution was washed with water (200 mL). The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give crude PLGA-R-848 conjugate. The crude polymer was chromatographed on silica using 10% methanol in methylene chloride as eluent. The fractions containing the conjugate were pooled and evaporated to give the purified conjugate. This was dried under high vacuum to provide the conjugate as a solid foam in a yield of 1.55 g (54.6%). By integrating the NMR signals for the aromatic protons of the quinoline and comparing this to the integrated intensity of the lactic acid CH proton it was determined that the molecular weight of the conjugate was approximately 2KD. GPC showed that the conjugate contained no detectable free R848.
Example 14: Polylactic Acid Conjugates Of An Imidazoquinoline Using A Lithium Diisopropylamide Catalysis
The imidazoquinoline (R-848), D/L lactide, and associated glassware were all dried under vacuum at 50 °C for 8 hours prior to use. To a round bottom flask equipped with a stir bar and condenser was added the R-848 (33 mg, 1.05 x 10"4 moles), and dry toluene (5 mL). This was heated to reflux to dissolve all of the R-848. The solution was stirred under nitrogen and cooled to room temperature to provide a suspension of finely divided R-848. To this suspension was added a solution of lithium diisopropyl amide (2.0 M in THF, 50μL, 1.0 x 10"4 moles) after which stirring was continued at room temperature for 5 minutes. The pale yellow solution that had formed was added via syringe to a hot (120 0C) solution of D/L lactide (1.87 g, 1.3 x 10"2 moles) under nitrogen. The heat was removed and the pale yellow solution was stirred at room temperature for one hour. The solution was diluted with methylene chloride (200 mL) and this was then washed with 1% hydrochloric acid (2 x 50 mL) followed by saturated sodium bicarbonate solution (50 mL). The solution was dried over magnesium sulfate, filtered and evaporated under vacuum to give the polylactic acid- R-848 conjugate. TLC (silica, 10% methanol in methylene chloride) showed that the solution contained no free R-848. The polymer was dissolved in methylene chloride (10 mL) and the solution was dripped into stirred hexane (200 mL). The precipitated polymer was isolated by decantation and was dried under vacuum to give 1.47 grams of the polylactic acid - R-848 conjugate as a white solid. A portion of the polymer was hydrolyzed in base and examined by HPLC for R-848 content. By comparison to a standard curve of R-848 concentration vs. HPLC response, it was determined that the polymer contained 10.96 mg of R-848 per gram of polymer.
Example 15: Polylactic Acid Activation
PLA (D/L-polylactide) (Resomer R202H from Boehringer-Ingelheim, KOH equivalent acid number of 0.21 mmol/g, intrinsic viscosity (iv): 0.21 dl/g) (10 g, 2.1 mmol, 1.0 eq) was dissolved in dichloromethane (DCM) (35 mL). EDC (2.0 g, 10.5 mmol, 5 eq) and NHS (1.2 g, 10.5 mmol, 5 eq) were added. The solids were dissolved with the aid of sonication. The resulting solution was stirred at room temperature for 6 days. The solution was concentrated to remove most of DCM and the residue was added to a solution of 250 mL of diethyl ether and 5 mL of MeOH to precipitate out the activated PLA-NHS ester. The solvents were removed and the polymer was washed twice with ether (2 x 200 mL) and dried under vacuum to give PLA-NHS activated ester as a white foamy solid (~ 8 g recovered, 1H NMR confirmed the presence of NHS ester). The PLA-NHS ester is stored under argon in a below -10 0C freezer before use.
Alternatively, the reaction can be performed in DMF, THF, dioxane, or CHCl3 instead of DCM. DCC can be used instead of EDC (resulting DCC-urea is filtered off before precipitation of the PLA-NHS ester from ether). The amount of EDC or DCC and NHS can be in the range of 2-10 eq of the PLA.
Example 16: PLA Activation
PLA (D/L-polylactide) with MW of 5000 (10.5 g, 2.1 mmol, 1.0 eq) is dissolved in dichloromethane (DCM) (35 mL). EDC (2.0 g, 10.5 mmol, 5 eq) and NHS (1.2 g, 10.5 mmol, 5 eq) are added. The resulting solution is stirred at room temperature for 3 days. The solution is concentrated to remove most of DCM and the residue is added to a solution of 250 mL of diethyl ether and 5 mL of MeOH to precipitate out the activated PLA-NHS ester. The solvents are removed and the polymer is washed twice with ether (2 x 200 mL) and dried under vacuum to give PLA-NHS activated ester as a white foamy solid (~ 8 g recovered, H NMR can be used to confirm the presence of NHS ester). The PLA-NHS ester is stored under argon in a below -10 0C freezer before use.
Alternatively, the reaction can be performed in DMF, THF, dioxane, or CHC13 instead of DCM. DCC can be used instead of EDC (resulting DCC-urea is filtered off before precipitation of the PLA-NHS ester from ether). The amount of EDC or DCC and NHS can be in the range of 2-10 eq of the PLA.
Example 17: Low MW PLGA Activation
In the same manner as provided above for polymer activation, low MW PLGA with 50% to 75% glycolide is converted to the corresponding PLGA-NHS activated ester and is stored under argon in a below -10 0C freezer before use.
Example 18: Polylactic Acid Activation
PLA (R202H, acid number of 0.21 mmol/g) (2.0 g, 0.42 mmol, 1.0 eq) was dissolved in 10 mL of dry acetonitrile. N,N'-disuccinimidyl carbonate (DSC) (215 mg, 1.26 mmol, 3.0 eq) and catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) were added. The resulting mixture was stirred under argon for 1 day. The resulting solution was concentrated to almost dryness. The residue was then added to 40 mL of ether to precipitate out the polymer which was washed twice with ether (2 x 30 mL) and dried under vacuum to give PLA-NHS activated ester (IH NMR showed the amount of NHS ester at about 80%).
Example 19: Polylactic Acid Activation
PLA (R202H) (5.0 g, 1.05 mmol) was dissolved in 25 mL of anhydrous DCM and 2.5 mL of anhydrous DMF. DCC (650 mg, 3.15 mmol, 5.0 eq) and pentafluorophenol (PFP) (580 mg, 3.15 mmol, 5.0 eq) were added. The resulting solution was stirred at room temperature for 6 days and then concentrated to remove DCM. The resulting residue was added to 250 mL of ether to precipitate out the activated PLA polymer which was washed with ether (2 x 10OmL) and dried under vacuum to give PLA-PFP activated ester as a white foamy solid (4.0 g).
Example 20: Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
PLA-NHS (1.0 g), R848 (132 mg, 0.42 mmol), and diisopropylethylamine (DIPEA) (0.073 mL, 0.42 mmol) were dissolved in 2 mL of dry DMF under argon. The resulting solution was heated at 50-60 0C for 2 days. The solution was cooled to room temperature and added to 40 mL of de-ionized (DI) water to precipitate out the polymer product. The polymer was then washed with DI water (40 mL) and ether (2 x 40 mL) and dried at 30 0C under vacuum to give R848-PLA conjugate as a white foamy solid (0.8 g, H NMR showed the conjugation of R848 to PLA via the amide bond). The degree of conjugation (loading) of R848 on the polymer was confirmed by HPLC analysis as follows: a weighed amount of polymer was dissolved in THF/MeOH and treated with 15% NaOH. The resulting hydrolyzed polymer products were analyzed for the amount of R848 by HPLC in comparison with a standard curve.
Example 21: Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
PLA-NHS (1.0 g, 0.21 mmol, 1.0 eq), R848 (132 mg, 0.42 mmol, 2.0 eq), DIPEA (0.15 mL, 0.84 mmol, 4.0 eq) and DMAP (25 mg, 0.21 mmol, 1.0 eq) were dissolved in 2 mL of dry DMF under argon. The resulting solution was heated at 50-60 0C for 2 days. The solution was cooled to room temperature and added to 40 mL of de-ionized (DI) water to precipitate out the polymer product. The polymer was then washed with DI water (40 mL) and ether (2 x 40 mL) and dried at 30 0C under vacuum to give PLA-R848 conjugate as a white foamy solid (0.7 g, 20 mg of the polymer was hydrolyzed in solution of 0.2 mL of THF, 0.1 mL of MeOH and 0.1 mL of 15% NaOH. The amount of R848 on the polymer was determined to be about 35 mg/g by reverse phase HPLC analysis (C 18 column, mobile phase A: 0.1% TFA in water, mobile phase B: 0.1 % TFA in CH3CN, gradient).
Example 22: Polylactic Acid Conjugates Of An Imidazoquinoline
PLA (R202H) (2.0 g, 0.42 mmol, 1.0 eq), DCC (260 mg, 1.26 mmol, 3.0 eq), NHS (145 mg, 1.26 mmol, 3.0 eq), R848 (200 mg, 0.63 mmol, 1.5 eq), DMAP (77 mg, 0.63 mmol, 1.5 eq) and DIPEA (0.223 mL, 1.26 mmol, 3.0 eq) were dissolved in 4 mL of dry DMF. The mixture was heated at 50-55 0C for 3 days. The mixture was cooled to room temperature and diluted with DCM. The DCC-urea was filtered off and the filtrate was concentrated to remove DCM. The resulting residue in DMF was added to water (40 mL) to precipitate out the polymer product which was washed with water (40 mL), ether/DCM (40 mL/4 mL) and ether (40 mL). After drying under vacuum at 30 0C, the desired PLA- R848 conjugate was obtained as a white foamy solid (1.5 g). Example 23: Polylactic Acid Conjugates Of An Imidazoquinoline
PLA (R202H) (2.0 g, 0.42 mmol, 1.0 eq), EDC (242 mg, 1.26 mmol, 3.0 eq), HOAt (171 mg, 1.26 mmol, 3.0 eq), R848 (200 mg, 0.63 mmol, 1.5 eq), and DIPEA (0.223 mL, 1.26 mmol, 3.0 eq) were dissolved in 4 mL of dry DMF. The mixture was heated at 50-55 0C for 2 days. The solution was cooled to room temperature and added to water (40 mL) to precipitate out the polymer product which was washed with water (40 mL), ether/MeOH (40 mL/2 mL) and ether (40 mL). The orange colored polymer was dissolved in 4 mL of DCM and the resulting solution was added to 40 mL of ether to precipitate out the polymer without much of the orange color. The light colored polymer was washed with ether (40 mL). After drying under vacuum at 30 0C, the desired PLA-R848 conjugate was obtained as a light brown foamy solid (1.5 g).
Example 24: Polylactic Acid Or PLGA Conjugates Of An Imidazoquinoline
PLA (R202H) (1.0 g, 0.21 mmol, 1.0 eq), EDC (161 mg, 0.84 mmol, 4.0 eq), HOBt.H2O (65 mg, 0.42 mmol, 2.0 eq), R848 (132 mg, 0.42 mmol, 2.0 eq), and DIPEA (0.150 mL, 0.84 mmol, 4.0 eq) were dissolved in 2 mL of dry DMF. The mixture was heated at 50-55 0C for 2 days. The solution was cooled to room temperature and added to water (40 mL) to precipitate out the polymer product. The orange colored polymer was dissolved in 2 mL of DCM and the resulting solution was added to 40 mL of ether to precipitate out the polymer which was washed with water/acetone (40 mL/2 mL) and ether (40 mL). After drying under vacuum at 30 0C, the desired PLA-R848 conjugate was obtained as an off-white foamy solid (1.0 g, loading of R848 on polymer was about 45 mg/g based on HPLC analysis and confirmed by 1H NMR). In the same manner, PLGA (75% Lactide)-R848 and PLGA (50% lactide)-R848 were prepared.
Example 25: Conjugation Of R848 To Polyglycine, A Polyamide
Figure imgf000077_0001
The t-butyloxycarbonyl (tBOC) protected polyglycine carboxylic acid (I) is prepared by ring opening polymerization of glycine N-carboxyanhydride (Aldrich cat #369772) using 6-aminohexanoic acid benzyl ester (Aldrich cat #S33465) by the method of Aliferis et al. (Biomacromolecules, 5_, 1653, (2004)). Protection of the end amino group as the t-BOC carbamate followed by hydrogenation over palladium on carbon to remove the benzyl ester completes the synthesis of BOC protected polyglycine carboxylic acid (I).
A mixture of BOC-protected polyglycine carboxylic acid (5 gm, MW = 2000, 2.5 x 10'3 moles) and HBTU (3.79 gm, 1.0 x 10'2 moles) in anhydrous DMF (100 mL) is stirred at room temperature under argon for 50 minutes. Then R848 (1.6 gm, 5.0 X 10"3 moles) is added, followed by diisopropylethylamine (4 mL, 2.2 x 10"2 moles). The mixture is stirred at RT for 6 h and then at 50-55 0C overnight (16 h). After cooling, the DMF is evaporated under vacuum and the residue is triturated in EtOAc (100 mL). The polymer is isolated by filtration and the polymer is then washed with 2-propanol (4 x 25 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 3 days. The polymer is isolated as an off white solid in a yield of 5.1 g (88%). The R848 loading that can be determined by NMR is 10.1%.
The r-BOC protecting group is removed using trifluoroacetic acid and the resulting polymer is grafted to PLA with carboxyl end groups by conventional methods.
Example 26: Preparation Of A PLGA Conjugate Of The Polyglycine/R848 Polymer
Step 1 : A t-BOC protected polyglycine/R848 conjugate (5 g) is dissolved in trifluoroacetic acid (25 mL) and this solution is warmed at 50°C for one hour. After cooling, the trifluoroacetic acid is removed under vacuum and the residue is triturated in ethyl acetate (25 mL). The polymer is isolated by filtration and is washed well with 2- propanol. After drying under vacuum there is obtained 4.5 grams of polymer as an off white solid.
Step 2: A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1 A, acid number 0.7 mmol/g, 10 g, 7.0 mmol) and HBTU (5.3 g, 14 mmol) in anhydrous DMF (100 mL) is stirred at RT under argon for 50 minutes. The polymer from above (1.4 g, 7 mmol) dissolved in dry DMF (20 mL) is added, followed by diisopropylethylamine (DIPEA) (5 mL, 28 mmol). The mixture is stirred at RT for 6 h and then at 50-55° C overnight (16 h). After cooling, the DMF is evaporated under vacuum, and the residue is dissolved in methylene chloride (50 mL). The polymer is precipitated by the addition of 2-propanol (200 mL). The polymer is isolated by decantation and is washed with 2-propanol (4 x 50 mL) to remove residual reagents and then dried under vacuum at 35-40 C overnight. There is obtained 9.8 g (86%) of the block copolymer.
Example 27: Preparation Of PLGA-2-Butoxy-8-Hydroxy-9-Benzyl Adenine Conjugate
Figure imgf000078_0001
A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (30 mL) is stirred at RT under argon for 30 minutes. Compound (I) (0.22 g,0.7 mmol) in 2 mL of dry DMSO is added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture is stirred at room temperature for 20 h. Additional amounts of HBTU (0.53 g, 1.4 mmol) and DIPEA (0.5 mL, 2.8 mmol) are added and the mixture is heated at 50-55 0C for 4 h. After cooling, the mixture is diluted with EtOAc (100 mL) and washed with saturated NH4Cl solution 20 mL), water (2 x 20 mL) and brine solution (20 mL). The solution is dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Isopropyl alcohol (IPA) (35 mL) is then added and the brownish polymer conjugate precipitates out of solution. The polymer is then washed with IPA (2 x 20 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 2 days as a brownish powder (1.0 g). Example 28: Preparation Of PLGA-2,9-Dibenzyl-8-Hydroxyadenine Conjugate
/
Figure imgf000079_0001
A mixture of PLGA (Lakeshores Polymers, MW -5000, 7525DLG1A, acid number 0.7 mmol/g, 1.0 g, 7.0 mmol) and HBTU (0.8 g, 2.1 mmol) in anhydrous EtOAc (30 mL) is stirred at RT under argon for 30 minutes. Compound (II) (0.24 g,0.7 mmol) in 2 mL of dry DMSO is added, followed by diisopropylethylamine (DIPEA) (0.73 mL, 4.2 mmol). The mixture is stirred at RT for 20 h. Additional amounts of HBTU (0.53 g, 1.4 mmol) and DIPEA (0.5 mL, 2.8 mmol) are added and the mixture is heated at 50-55 0C for 4 h. After cooling, the mixture is diluted with EtOAc (100 mL) and washed with saturated NH4Cl solution 20 mL), water (2 x 20 mL) and brine solution (20 mL). The solution is dried over Na2SO4 (10 g) and concentrated to a gel-like residue. Isopropyl alcohol (IPA) (35 mL) is then added and the brownish polymer conjugate precipitated out of solution. The polymer is then washed with IPA (2 x 20 mL) to remove residual reagents and dried under vacuum at 35-40 0C for 2 days as a brownish powder (1.2 g).
Example 29: Imide Ring Opening Used To Attach 2-Pentyl-8-Hydroxy-9- Benzyladenine To The Terminal Alcohol Groups Of Poly-Hexamethylene Carbonate) Diol Of Molecular Weight 2000
The poly(hexamethylene carbonate) diol is purchased from Aldrich Chemical Company, Cat # 461164.
Poly(hexamethylene carbonate) diol:
HO— [CH2(CH2)4CH2OCO2]nCH2(CH2)4CH2— OH Poly(hexamethylene carbonate) diol - 8-oxoadenine conjugate: HtU—
TBD
HO— [CH2(CH2)4CH2OCO2]nCH2(CH2)4CH2-OH ++ Λ I N N N C CΛ5H11
°vA0
Figure imgf000080_0001
The polymer (5 g, 2.5 x 10"3 moles) is dissolved in methylene chloride 25 mL and the lactam of 2-pentyl-8-hydroxy-9-benzyladenine (2.05 g, 5.0 x 10"3 moles) is added. This slurry is stirred as l,5,7-triazabicyclo-[4,4,0]dec-5-ene (TBD, 0.557 g, 4 x 10"3 moles) is added in a single portion. After stirring at room temperature overnight a clear pale yellow solution forms. The solution is diluted with methylene chloride (100 mL), and the solution is washed with 5% citric acid. This solution is dried over sodium sulfate after which it is filtered and evaporated under vacuum. After drying under high vacuum there is obtained 5.5 grams (78%) of polymer. NMR is used to determine the benzyladenine content which is 18%.
Example 30: Nicotine-Peg-Pla Conjugates
A 3-nicotine-PEG-PLA polymer was synthesized as follows:
First, monoamino poly(ethylene glycol) from JenKem® with a molecular weight of 3.5KD (0.20 g, 5.7 x 10"5 moles) and an excess of 4-carboxycotinine (0.126 g, 5.7 x 10"4 moles) were dissolved in dimethylformamide (5.0 mL). The solution was stirred and dicyclohexylcarbodiimide ( 0.124 g, 6.0 x 10"4 moles) was added. This solution was stirred overnight at room temperature. Water (0.10 mL) was added and stirring was continued for an additional 15 minutes. The precipitate of dicyclohexyl urea was removed by filtration and the filtrates were evaporated under vacuum. The residue was dissolved in methylene chloride (4.0 mL) and this solution was added to diethyl ether (100 mL). The solution was cooled in the refrigerator for 2 hours and the precipitated polymer was isolated by filtration. After washing with diethyl ether, the solid white polymer was dried under high vacuum. The yield was 0.188 g. This polymer was used without further purification for the next step. The nicotine/PEG polymer (0.20 g, 5.7 x 10'5 moles) was dissolved in dry tetrahydrofuran (10 mL) under nitrogen and the solution was stirred as a solution of lithium aluminum hydride in tetrahydrofuran (1.43 mL of 2.0 M, 2.85 x 10'3 moles) was added. The addition of the lithium aluminum hydride caused the polymer to precipitate as a gelatinous mass. The reaction was heated to 80 0C under a slow stream of nitrogen and the tetrahydrofuran was allowed to evaporate. The residue was then heated at 80 °C for 2 hours. After cooling, water (0.5 mL) was cautiously added. Once the hydrogen evolution had stopped, 10% methanol in methylene chloride (50 mL) was added and the reaction mixture was stirred until the polymer had dissolved. This mixture was filtered through Celite® brand diatomaceous earth (available from EMD Inc. as Celite® 545, part #CX0574-3) and the filtrates were evaporated to dryness under vacuum. The residue was dissolved in methylene chloride (4.0 mL) and this solution was slowly added to diethyl ether (100 mL). The polymer separated as a white flocculent solid and was isolated by centrifugation. After washing with diethyl ether, the solid was dried under vacuum. The yield was 0.129 g.
Next, a 100 mL round bottom flask, equipped with a stir bar and reflux condenser was charged with the PEG/nicotine polymer (0.081 g, 2.2 x 10'5 moles), D/L lactide (0.410 g, 2.85 x 10"3 moles) and anhydrous sodium sulfate (0.380 g). This was dried under vacuum at 55 °C for 8 hours. The flask was cooled and flushed with argon and then dry toluene (10 mL) was added. The flask was placed in an oil bath set at 120 0C, and once the lactide had dissolved, tin ethylhexanoate (5.5 mg, 1.36 x 10"5 moles) was added. The reaction was allowed to proceed at 120 0C for 16 hours. After cooling to room temperature, water (15 mL) was added and stirring was continued for 30 minutes. Methylene chloride (200 mL) was added, and after agitation in a separatory funnel, the phases were allowed to settle. The methylene chloride layer was isolated and dried over anhydrous magnesium sulfate. After filtration to remove the drying agent, the filtrates were evaporated under vacuum to give the polymer as a colorless foam. The polymer was dissolved in tetrahydrofuran (10 mL) and this solution was slowly added to water (150 mL) with stirring. The precipitated polymer was isolated by centrifugation and the solid was dissolved in methylene chloride (10 mL). The methylene chloride was removed under vacuum and the residue was dried under vacuum. 3-nicotine-PEG-PLA polymer yield was 0.38 g Example 31: Synthetic Nanocarrier Formulation
For encapsulated adjuvant formulations, Resiquimod (aka R848) was synthesized according to the synthesis provided in Example 99 of US Patent 5,389,640 to Gerster et al.
R848 was conjugated to PLA by a method provided above, and the PLA structure was confirmed by NMR.
PLA-PEG-nicotine conjugate was prepared according to Example 30.
PLA was purchased (Boehringer Ingelheim Chemicals, Inc., 2820 North Normandy Drive, Petersburg, VA 23805). The polyvinyl alcohol (Mw = 11 KD - 31 KD, 85-89% hydrolyzed) was purchased from VWR scientific. Ovalbumin peptide 323-339 was obtained from Bachem Americas Inc. (3132 Kashiwa Street, Torrance CA 90505. Part # 4064565).
The above materials were used to prepare the following solutions:
1. Resiquimod (R848) @ 10 mg/mL and PLA @ 100 mg/mL in methylene chloride or PLA-R848 conjugate @ 100 mg/mL in methylene chloride
2. PLA-PEG-nicotine in methylene chloride @ 100 mg/mL
3. PLA in methylene chloride @ 100 mg/mL
4. Ovalbumin peptide 323 - 339 in water @ 10 or 69 mg/mL
5. Polyvinyl alcohol in water @50 mg/mL.
Solution #1 (0.25 to 0.75 mL), solution #2 (0.25 mL), solution #3 (0.25 to 0.5 mL) and solution #4 (0.ImL) were combined in a small vial and the mixture was sonicated at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250. To this emulsion was added solution #5 (2.0 mL) and sonication at 35% amplitude for 40 seconds using the Branson Digital Sonifier 250 forms the second emulsion. This was added to a beaker containing phosphate buffer solution (30 mL) and this mixture was stirred at room temperature for 2 hours to form the nanoparticles.
To wash the particles a portion of the nanoparticle dispersion (7.4 mL) was transferred to a centrifuge tube and spun at 5,300g for one hour, supernatant was removed, and the pellet was re-suspended in 7.4 mL of phosphate buffered saline. The centrifuge procedure was repeated and the pellet was re-suspended in 2.2 mL of phosphate buffered saline for a final nanoparticle dispersion of about 10 mg/mL.
Example 32: Double Emulsion with Multiple Primary Emulsions Materials
Ovalbumin peptide 323-339, a 17 amino acid peptide known to be a T cell epitope of Ovalbumin protein, was purchased from Bachem Americas Inc. (3132 Kashiwa Street, Torrance CA 90505.)
Resiquimod (aka R848) was synthesized according to a method provided in US Patent 6,608,201.
PLA-R848, resiquimod, was conjugated to PLA with a molecular weight of approximately 2,500 Da according to a method provided above.
PLGA-R848, resiquimod, was conjugated to PLGA with a molecular weight of approximately 4,100 Da according to a method provided above.
PS- 1826 DNA oligonucleotide with fully phosphorothioated backbone having nucleotide sequence 5'-TCC ATG ACG TTC CTG ACG TT-3' with a sodium counter-ion was purchased from Oligos Etc (9775 SW Commerce Circle C-6, Wilsonville, OR 97070.)
PO- 1826 DNA oligonucleotide with phosphodiester backbone having nucleotide sequence 5'-TCC ATG ACG TTC CTG ACG TT-3' with a sodium counter-ion was purchased from Oligos Etc. (9775 SW Commerce Circle C-6, Wilsonville, OR 97070.)\
PLA with an inherent viscosity of 0.21 dL/g was purchased from SurModics Pharmaceuticals (756 Tom Martin Drive, Birmingham, AL 35211. Product Code 100 DL 2A.)
PLA with an inherent viscosity of 0.71 dL/g was purchased from SurModics Pharmaceuticals (756 Tom Martin Drive, Birmingham, AL 35211. Product Code 100 DL 7A.)
PLA with an inherent viscosity of 0.19 dL/g was purchased from Boehringer Ingelheim Chemicals, Inc. (Petersburg, VA. Product Code R202H.)
PLA-PEG-nicotine with a molecular weight of approximately 18,500 to 22,000 Da was prepared according to a method provided above.
PLA-PEG-R848 with a molecular weight of approximately 15,000 Da was synthesized was prepared according to a method provided above.
Polyvinyl alcohol (Mw = 11,000 - 31,000, 87-89% hydrolyzed) was purchased from J.T. Baker (Part Number U232-08). Batches were produced using a double emulsion process with multiple primary emulsions. The table below references the solution suffix (e.g., B in Solution #1 column indicates Solution #1B was used) and volume of solution used.
Figure imgf000084_0001
Solution IA: Ovalbumin peptide 323 - 339 @ 35 mg/mL in dilute hydrochloric acid aqueous solution. The solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
Solution IB: Ovalbumin peptide 323 - 339 @ 70 mg/mL in dilute hydrochloric acid aqueous solution. The solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
Solution 2A: 0.21 -IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride. The solution was prepared by first preparing two separate solutions at room temperature: 0.21 -IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride. The final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution.
Solution 2B: 0.71 -IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride. The solution was prepared by first preparing two separate solutions at room temperature: 0.71 -IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride. The final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution.
Solution 2C: 0.19-IV PLA @ 75 mg/mL and PLA-PEG-nicotine @ 25 mg/ml in methylene chloride. The solution was prepared by first preparing two separate solutions at room temperature: 0.19-IV PLA @ 100 mg/mL in pure methylene chloride and PLA-PEG- nicotine @ 100 mg/mL in pure methylene chloride. The final solution was prepared by adding 3 parts PLA solution for each part of PLA-PEG-nicotine solution. Solution 3 A: Oligonucleotide (either PS- 1826 or PO- 1826) @ 200 mg/ml in purified water. The solution was prepared by dissolving oligonucleotide in purified water at room temperature.
Solution 4A: Same as Solution #2A.
Solution 4B: Same as Solution #2B.
Solution 4C: Same as Solution #2C.
Solution 5 A: Polyvinyl alcohol @ 50 mg/mL in 100 mM pH 8 phosphate buffer.
Two separate primary water in oil emulsions were prepared. W 1/02 was prepared by combining solution 1 and solution 2 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250. W3/O4 was prepared by combining solution 3 and solution 4 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250. A third emulsion with two inner emulsion ([W1/O2,W3/O4]/W5) emulsion was prepared by combining 0.5 ml of each primary emulsion (W 1/02 and W3/O4) and solution 5 and sonicating at 30% amplitude for 40 to 60 seconds using the Branson Digital Sonifier 250.
The third emulsion was added to a beaker containing 7OmM phosphate buffer solution (30 mL) and stirred at room temperature for 2 hours to allow for the methylene chloride to evaporate and for the nanocarriers to form. A portion of the nanocarriers were washed by transferring the nanocarrier suspension to a centrifuge tube and spinning at 13,823g for one hour, removing the supernatant, and re-suspending the pellet in phosphate buffered saline. The washing procedure was repeated and the pellet was re-suspended in phosphate buffered saline for a final nanocarrier dispersion of about 10 mg/mL.
The amounts of oligonucleotide and peptide in the nanocarrier were determined by HPLC analysis.
Example 33: Standard Double Emulsion Materials
As provided in Example 32 above.
Batches were produced using a standard double emulsion process. The table below references the solution suffix (e.g., B in Solution #1 column indicates Solution #1B was used) and volume of solution used.
Figure imgf000086_0001
Solution IA: Ovalbumin peptide 323 - 339 @ 69 mg/mL in de-ionized water. The solution was prepared by slowly adding ovalbumin peptide to the water while mixing at room temperature.
Solution IB: Ovalbumin peptide 323 - 339 @ 70 mg/mL in dilute hydrochloric acid aqueous solution. The solution was prepared by dissolving ovalbumin peptide in 0.13N hydrochloric acid solution at room temperature.
Solution 1C: Oligonucleotide (PS- 1826) @ 50 mg/ml in purified water. The solution was prepared by dissolving oligonucleotide in purified water at room temperature.
Solution ID: Ovalbumin peptide 323 - 339 @ 17.5 mg/mL in dilute hydrochloric acid aqueous solution. The solution was prepared by dissolving ovalbumin peptide @ 70 mg/ml in 0.13N hydrochloric acid solution at room temperature and then diluting the solution with 3 parts purified water per one part of starting solution.
Solution 2 A: R848 @ 10 mg/ml and 0.19-IV PLA @ 100 mg/mL in pure methylene chloride prepared at room temperature.
Solution 2B: PLA-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
Solution 2C: PLGA-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
Solution 2D: PLA-PEG-R848 @ 100 mg/ml in pure methylene chloride prepared at room temperature.
Solution 3 A: PLA-PEG-nicotine @ 100 mg/ml in pure methylene chloride prepared at room temperature. Solution 4A: 0.19-IV PLA @ 100 mg/mL in pure methylene chloride prepared at room temperature.
Solution 5A: Polyvinyl alcohol @ 50 mg/mL in de-ionized water.
Solution 5B: Polyvinyl alcohol @ 50 mg/mL in 100 mM pH 8 phosphate buffer.
The water in oil (W/O) primary emulsion was prepared by combining solution 1 and solution 2, solution 3, and solution 4 in a small pressure tube and sonicating at 50% amplitude for 40 seconds using a Branson Digital Sonifier 250. The water/oil/water (W/O/W) double emulsion was prepared by adding solution 5 to the primary emulsion and sonicating at 30% to 35% amplitude for 40 seconds using the Branson Digital Sonifier 250.
The double emulsion was added to a beaker containing phosphate buffer solution (30 mL) and stirred at room temperature for 2 hours to allow for the methylene chloride to evaporate and for the nanocarriers to form. A portion of the nanocarriers were washed by transferring the nanocarrier suspension to a centrifuge tube and spinning at 5,000 to 9,500 RPM for one hour, removing the supernatant, and re-suspending the pellet in phosphate buffered saline. The washing procedure was repeated and the pellet was re-suspended in phosphate buffered saline for a final nanocarrier dispersion of about 10 mg/mL.
Example 34: Determination Of Amount Of Agents
Method for R848 and peptides (e.g., ova peptide, human peptide, TT2pDT5t)
The amount of R848 (immunostimulatory agent) and ova peptide (T cell antigen) was measured using reverse phase HPLC on an Agilent 1100 system at appropriate wavelengths (λ = 254 nm for R848 and 215 nm for ova peptide) equipped with an Agilent Zorbax SB-Cl 8 column (3.5μm. 75 x 4.6 mm. Column Temp = 400C (part no. 866953- 902)) using Mobile Phase A (MPA) of 95% water/5% acetonitrile/0.1% TFA and Mobile Phase B (MPB) of 90 % acetonitrile/10% water/0.09% TFA (Gradient: B = 5 to 45 % in 7 minutes; ramp to 95% B to 9 min; decrease back to 5% B to 9.5 min and kept equilibrating to end. Total run time was 13 minute with flow rate of 1 mL/min).
Method for CpG
The amount of CpG (immunostimulatory agent) was measured using reverse phase HPLC on Agilent 1100 system at 260 nm equipped with Waters XBridge C- 18 (2.5 micron particle, 5Ox 4.6 mm ID (part No. 186003090), column temp. 600C) using mobile phase A of 2% acetonitrile in 100 mM TEA- acetic acid buffer, pH about 8.0 and mobile B as 90% acetonitrile, 10% water (column equilibrated at 5% B, increased to 55% B in 8.5 min, then ramped to 90% B to 12 minutes. Strength of B was rapidly decreased to 5% in one minute and equilibrated until stop time, 16 minutes. The flow rate was 1 mL/min until end of the method, 16 minutes).
Method for Nicotine analog
Nicotine analog was measured using reverse phase HPLC on Agilent 1100 system at 254 nm equipped with Waters X-Bridge C- 18 (5 micron particle, 100 x 4.6 mm ID, column temp at 400C) using Mobile Phase A (MPA) of 95% water/5% acetonitrile/0.1% TFA and Mobile Phase B (MPB) of 90 % acetonitrile/ 10% water/0.09% TFA (gradient: column was equilibrated at 5% B increased to 45% B in 14 minutes. Then ramped up to 95% B from 14 to 20 minutes. Mobile B strength was quickly decreased back to 5% and requilibrated until the end of the method. The flow rate of the method was maintained at 0.5 ml/min with total run time of 25 minutes. The NC suspension was centrifuged @14000 rpm for about 15-30 minutes depending on particle size. The collected pellets were treated with 200 uL of cone. NH4OH (8 M) for 2h with agitation until the solution turns clear. A 200 uL of 1% TFA was added to neutralize the mixture solution, which brought the total volume of the pellet solution to 200 uL. An aliquot of 50 uL of the solution was diluted with MPA(or water) to 200 uL and analyzed on HPLC as above to determine the amount present in the pellets.
Encapsulated free R848 in nanocarrier
0.5 mL of the NC suspension was centrifuged @14000rpm for about 15 minutes. The collected pellet was dissolved with 0.3 mL of acetonitrile and centrifuged briefly @ 14000rpm to remove any residual insolubles. The clear solution was further diluted with 4 times equivalent volume of MPA and assayed on reverse phase HPLC described above.
Encapsulated CpG in nanocarrier
330 uL of NC suspension from the manufacture (about 10 mg/mL suspension in PBS) was spun down at 14000rpm for 15 to 30 minutes depending on particle size. The collected pellets were re-suspended with 500 uL of water and sonicated for 30 minutes to fully disperse the particles. The NC was then heated at 6000C for 10 minutes. Additional 200 uL of 1 N NaOH was added to the mixture, heated for another 5 minutes where the mixture becomes clear. The hydrolyzed NC solution was centrifuged briefly at 14000 rpm. A final 2x dilution of the clear solution using water was then made and assayed on the reverse HPLC described above.
Encapsulated T cell antigens (e.g., ova peptide, or human peptide, TT2pDT5t)
330 uL of NC suspension from the manufacture (about 10 mg/mL suspension in PBS) was spun down at 14000rpm for 15 to 30 minutes. 100 uL of acetonitrile was added to the pellets to dissolve the polymer components of the NC. The mixture was vortexed and sonicated for 1 to 5 minutes. 100 uL 0.2% TFA was added to the mixture to extract the peptides and sonicated for another 5 minutes to ensure the break down of the aggregates. The mixture was centrifuged at 14000rpm for 15 minutes to separate any insoluble materials (e.g., polymers). A 50 uL aliquot of the supernatant diluted with 150 uL of MPA (or water) was taken and assayed on the reverse phase HPLC as described above.
Amount of conjugated nicotine analog (B cell antigen) in nanocarriers
1.5 mL of NC suspension was spun down @ HOOOrpm for about 15 minutes, the pellets were hydrolyzed using 150 uL of concentrated NH4OH (8M) for about 2-3 h until the solution turns clear. A 150 uL of 2% TFA(aq) solution was added to the pellet mixture to neutralize the solution. A 100 uL aliquot of the mixture was diluted with 200 uL of water and assayed on reverse phase HPLC described above and quantified based on the standard curve established using the precursor (PEG-nicotine) of the PLA-PEG-nicotine used in the manufacture.
Example 35: Release Rate Of Immunomodulatory Agent From Synthetic Nanocarriers
The following data show the rates of release of R-848 from nanoparticles made from the low molecular weight polylactic acid-R-848 conjugate shown above. Table 1 provides relevant formulation information for the experiments.
The release of T-cell antigen, ova peptide and adjuvant, R848 from the synthetic nanocarrier (nanoparticles) in PBS (10OmM, pH=7.4) and Citrate buffer (100 mM, pH=4.5) at 37 0C were performed as follows: Analytical Method: The amount of R848 and ova peptide released is measured using reverse phase HPLC on a Agilent 1 100 system at λ = 215 run equipped with an Agilent Zorbax SB-C18 column (3.5μm. 75 x 4.6 mm. Column Temp = 40 °C (part no. 866953- 902)) using Mobile Phase A (MPA) of 98% water/2% acetonitrile/0.1% TFA and Mobile Phase B (MPB) of 90 % acetonitrile/10% water/0.09% TFA with Gradient: B = 5 to 45 % in 7 minutes; ramp to 95% B to 9 min; re-EQ to end. 13 minute run time. Flow = 1 mL/min.
The total amount of R848 and ova peptide present in the nanoparticles was as shown in Table 1. An aqueous suspension of the tested synthetic nanocarriers was then diluted to a final stock volume of 4.4 mL with PBS.
(A) In vitro release rate measurement in PBS (pH=7.4):
For TO sample, a 200 μL aliquot was immediately removed from each of the NP sample and centrifuged @ 14000 rpm in a microcentrifuge tubes using a Microcentrifuge ( Model: Galaxy 16). 100 μL of supernatant was removed and diluted to 200 μL in HPLC Mobile Phase A (MPA) and assayed for the amount of R848 and ova peptide released on the reverse phase HPLC.
For time point measurements: 9 x 200 μL of each of the samples were added to microcentrifuge tubes (3 x 200 for unconjugated) and 300 μL of 37C PBS was added to each above aliquot and the samples were placed immediately in 37 0C oven. At the following time points: 24 hr, 48 hr, 96 hr and 144 hr (for conjugated R848) or 2 h, 16h and 24 h (for unconjugated (encapsulated) R848), the samples were centrifuged and assayed for the amount of R848 and ova peptide released as above for TO sample.
(B) In vitro release rate measurement in Citrate Buffer (pH=4.5):
For TO sample, a 200 μL aliquot was removed from each of the samples and centrifuged @ 6000 rpm for 20 minutes and the supernatant was removed. The residue nanoparticles was resuspended in 200 uL of citrate buffer and centrifuged @ 14000 rpm for 15 minutes. 100 uL of the supernatant was removed and diluted to 200 uL with MPA and assayed for R848 and peptide as above.
For time point measurements: 9 x 200 uL of each of the samples were added to microcentrifuge tubes (3 x 200 for unconjugated) and centrifuged for 20 minutes @ 6000 rpm and the supernatants were removed. The residue NPs were then resuspended in 500 uL of citrate buffer and placed in 37 0C oven. At the following time points: 24 hr, 48 hr, 96 hr and 144 hr (for conjugated R848) or 2 h, 16h and 24 h (for unconjugated (encapsulated) R848), the samples were centrifuged and assayed for the amount of R848 and ova peptide released as above for TO sample.
In order to complete the mass balance from above measurements in PBS and Citrate buffer, the remaining pellets (conjugated R848 samples only) from each sample was treated with 200 uL of cone. NH4OH (8 M) for 3h with mixing. After the mixture was settled, 200 uL of 1% TFA was added to bring total volume of the pellet to 400 uL. An aliquot of 50 uL of the solution was diluted with MPA to 200 uL and analyzed on HPLC as above to determine the amount of R848 and ova peptide that remained in the pellet after in vitro release to close the mass balance. For unconjugated samples, the sample was diluted with TFA in acetonitrile and assayed as above for R848 and peptide.
The results are summarized in Figs. 1-3.
Table 1. Formulation Targets With A Covalent R848
Figure imgf000091_0001
*C=covalent R848; E=encapsulation of R848
MATERIALS AND METHOD -
HPLC - Agilent 1100. λ = 215 nm. Column Temp = 40°C
Column - Agilent Zorbax SB-C 18, 3.5μm. 75 x 4.6 mm. (part no. 866953-902) Cl 8 guard column
Mobile Phase A (MPA) - 98% water/2% acetonitrile/0.1% TFA
Mobile Phase B (MPB) - 90 % acetonitrile/10% water/0.09% TFA
Gradient: B = 5 to 45 % in 7 minutes; ramp to 95% B to 9 min; re-EQ to end. 13 minute run time. Flow = 1 mL/min. PBS - 10OmM, pH=7.4. Citrate Buffer - 100 mM, pH = 4.5. Oven -
Microcentrifuge - Galaxy 16 Microcentrifuge tubes Sonicator
Pipets - 20, 200, 1000 μL adjustable HPLC grade water - EMD - #WX0008-l . NH4OH - ~8M. Mallinkcrodt. TFA, 0.2%. Prep 4/27/09. TFA, 1%. Prep 5/13/09. Thermometer
SAMPLES - "6-1" and "6-2" have entrapped R848. All of the rest have conjugated R848. The estimated values are based on the loading results from the "62" series.
Table 2 . Estimated R848 and Ova peptide in synthetic nanocarriers:
Figure imgf000092_0001
Sample volumes were slightly below what was planned. To ensure enough material is available for all time points, the following volumes of PBS were added to the samples to bring them all to 4.4 mL.
Table 3
Figure imgf000093_0001
PROCEDURE -
1) T=O Sample Prep a. PBS i. Remove a 200 μL aliquot from each of the samples. Microcentrifuge
@ 14000 rpm. Remove supernatant, ii. Dilute supernatant 100 μL > 200 μL in MPA. (DF=2). iii. Assay for peptide and R848. b. Citrate i. Remove a 200 μL aliquot from each of the samples. Microcentrifuge @ 6000 rpm for 20 minutes. Remove supernatant. ii. Add 200 uL of citrate buffer and thoroughly resuspend. iii. Microcentrifuge @ 14000 rpm for 15 minutes. Remove supernatant, iv. Dilute supernatant lOOμL > 200 μL in MPA. (DF=2) v. Assay for peptide and R848.
2) PBS IVR a. Add 9 x 200 μL of each of the samples to microcentrifuge tubes. (3 x 200 for unconjugated) b. To each aliquot add 300 μL of 37C PBS. c. Immediately place samples in 37C oven.
3) Citrate IVR a. Add 9 x 200 uL of each of the samples to microcentrifuge tubes. (3 x 200 for unconjugated) b. Centrifuge for 20 minutes @ 6000 rpm. c. Remove the supernatants. d. To each tube, add 500 μL of citrate buffer and resuspend thoroughly. e. Place samples in 37C oven
4) For lots 1 - 4 and 8, remove the samples (see step 6) at the following time points: a. Conjugated i. 24 hr ii. 48 hr (2 days) iii. 96 hr (4 days) iv. 144 hr (6 days) v. Further time points TBD based on the above data, b. Non conjugated i. 2 hr ii. 16 hr iii. 24 hr
5) For lots 6 and 7, remove samples at the following time points: a. PBS i. 24 hr ii. 48 hr (2 days) iii. 96 hr (4 days) iv. 144 hr (6 days) v. Further time points TBD based on the above data. b. Citrate i. 2 hr ii. 16 hr iii. 24 hr iv. 48 hr (2 days) v. 72 hr (3 days) vi. 96 hr (4 days) vii. 120 hr (5 days) viii. Further time points TBD based on the above data.
6) Sample as follows: a. Microcentrifuge @ 14000 rpm for 15 minutes. b. Remove supernatant. c. Dilute 100 μL to 200 μL in MPA. (DF=2)
7) Assay for peptide and R848. This will provide the amount released at each time point.
TO COMPLETE MASS BALANCE, PERFORM THE FOLLOWING:
8) To the remaining pellets (conjugated only) add 20OuL NH4OH.
9) Vortex briefly and sonicate to disperse.
10) Add stir bar. Allow to sit until clear (at least 3 hours).
1 1) Add 20OuL of 1% TFA (total pellet volume = 400 μL).
12) Dilute 50μL to 200 μL in MPA. Analyze by HPLC to determine peptide and R848 remaining in the pellet. (DF=4).
13) For unconjugated lots, assay for peptide and R848 with typical AcN/TFA method.
Example 36: Release Rate Testing
The release of antigen (e.g., ova peptide, T cell antigen) and immunostimulatory agents (e.g., R848, CpG) from synthetic nanocarriers in phosphate buffered saline solution (PBS) (10OmM, pH=7.4) and citrate buffer (100 mM, pH=4.5) at 37 °C was determined as follows:
The release of R848 from the nanocarrier composed of conjugated R848 and the ova peptide was achieved by exchanging desired amount of the aqueous suspension of the tested synthetic nanocarriers obtained from the manufacture (e.g., about 10 mg/mL in PBS) into the same volume of the appropriate release media (Citrate buffer 10OmM) via centrifugation and re-suspension.
In vitro release rate measurement in PBS (pH=7.4)
1 mL of the PBS suspension NC was centrifuged @ 14000 rpm in microcentrifuge tubes generally from 15-30 minutes depending on particle size. The collected supernatant was then diluted with equal volume of the mobile phase A (MPA) or water and assayed on reverse phase HPLC for the amount of the R848 release during the storage. The remaining pellet was re-suspended to homogeneous suspension in ImL of PBS and placed to 370C thermal chamber with constant gentle agitation
For TO sample, a 150 μL aliquot was immediately removed from NC suspension prior placing the NC suspension to 370C thermal chamber and centrifuged @ 14000 rpm in microcentrifuge tubes using a microcentrifuge (Model: Galaxy 16). 100 μL of the supernatant was removed and diluted to 200 μL with HPLC Mobile Phase A (MPA) or water and assayed for the amount of R848 and ova peptide released on the reverse phase HPLC.
For time point measurements, 150 μL aliquot was removed from the 370C NC sample suspension, and the samples were centrifuged and assayed for the amount of R848 and ova peptide released in the same manner as for TO sample. The R848 and ova peptide released was tested at 6h, 24h for routine monitoring with additional 2h, 48h, 96h and 144h for complete release profile establishment.
In vitro release rate measurement in Citrate Buffer (pH=4.5)
A 100 mM sodium citrate buffer (pH= 4.5) was applied to exchange the original NC storage solution (e.g., PBS) instead of the PBS buffer, pH= 7.4. In order to complete the mass balance from above measurements in PBS and Citrate buffer, the remaining pellets from each time point were treated with 100 uL OfNH4OH (8 M) for 2h (or more) with agitation until solution turn clear. A 100 uL of 1% TFA was added to neutralize the mixture, which brought the total volume of the pellet solution to 200 uL. An aliquot of 50 uL of the mixture was diluted with MPA (or water) to 200 uL and analyzed on HPLC as above to determine the amount of unreleased R848 remaining in the pellets after in vitro release to close the mass balance. For unconjugated samples, the sample was diluted with TFA in acetonitrile and assayed as above for R848.
The release of CpG was determined similar to the measurement of R848 and ova peptide in terms of sample preparation and monitored time points. However, the amount of the CpG in the release media was assayed by the reverse phase HPLC method described above.
Example 37: Immunization with NC-Nic Carrying CpG Adjuvant
Groups of five mice were immunized three times (subcutaneously, hind limbs) at 2- week intervals (days 0, 14 and 28) with 100 μg of NC-Nic. NC-Nic was a composition of nanocarriers exhibiting nicotine on the outer surface and, for all groups of mice except for Group 1, carrying CpG- 1826 (thioated) adjuvant, which was released from the nanocarriers at different rates. The nanocarriers were prepared according to a method provided above. Serum anti-nicotine antibodies were then measured on days 26 and 40. EC50 for anti- nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 4.
The Group 1 mice were administered NC-Nic w/o CpG- 1826 containing Ova peptide and polymers, 75% of which were PLA and 25% were PLA-PEG-Nic. The Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 3.2% CpG-1826; release rate at 24 hours: 4.2 μg CpG per mg of NC. The Group 3 mice were administered NC-Nic containing polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 3.1% CpG-1826; release rate at 24 hours: 15 μg CpG per mg of NC. Release was determined at a pH of 4.5.
The results shown in Fig. 4 demonstrate that entrapment of adjuvant into nanocarriers is beneficial for the immune response against NC-associated antigen, and, furthermore, that the higher release rate of entrapped CpG adjuvant from within the nanocarriers (NC) at 24 hours produced an immune response, which was elevated compared to one induced by NC with a slower release rate of CpG adjuvant (a TLR9 agonist).
Example 38: Immunization with NC-Nic Carrying Two Forms of CpG Adjuvant
Groups of five mice were immunized two times (subcutaneously, hind limbs) at 4- week intervals (days 0, and 28) with 100 μg of NC-Nic and serum anti-nicotine antibodies were then measured on days 12, 24 and 40. NC-Nic was a composition of nanocarriers exhibiting nicotine on the outer surface and carrying one of two forms of CpG- 1826 adjuvant. The nanocarriers were prepared according to a method provided above. EC50 for anti-nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 5.
The Group 1 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 6.2% CpG- 1826 (thioated); release rate at 24 hours: 16.6 μg CpG per mg of NC. The Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA- PEG-Nic, and 7.2% CpG-1826 (thioated); release rate at 24 hours: 13.2 μg CpG per mg of NC. The Group 3 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 7.9% CpG- 1826 (phosphodiester or PO, non-thioated); release rate at 24 hours: 19.6 μg CpG per mg of NC. The Group 4 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 8.5% CpG-1826 (PO, non-thioated); release rate at 24 hours: 9.3 μg CpG per mg of NC. Release was determined at a pH of 4.5.
The results shown in Fig. 5 demonstrate that the rate of release of entrapped adjuvant (CpG, TLR9 agonist) from nanocarriers influenced production of an antibody to NC-bound antigen (nicotine) with the nanocarrier exhibiting higher release rate at 24 hours induced stronger humoral immune response (group 1 > group 2 and group 3 > group 4). This was true irrespective of CpG form used (more stable, thioated or less stable non- thioated).
Example 39: Immunization with NC-Nic Carrying R848
Groups of five mice were immunized three times (subcutaneously, hind limbs) at 2- week intervals (days 0, 14 and 28) with 100 μg of NC-Nic and serum anti-nicotine antibodies were then measured on days 26, 40 and 54. The nanocarriers were prepared according to a method provided above. EC50 for anti-nicotine antibodies as measured in standard ELISA against polylysine-nicotine are shown in Fig. 6.
The Group 1 mice were administered NC-Nic containing ova peptide and polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, but without adjuvant. The Group 2 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA and 25% were PLA-PEG-Nic, and 1.0% R848; of which 92% is released at 2 hours and more than 96% is released at 6 hours. The Group 3 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA-R848 and 25% were PLA-PEG- Nic, and 1.3% R848, of which 29.4% is released at 6 hours and 67.8% is released at 24 hours. The Group 4 mice were administered NC-Nic containing ova peptide, polymers, 75% of which were PLA-R848 and 25% were PLA-PEG-Nic, and 1.4% of R848, of which 20.4% is released at 6 hours and 41.5% is released at 24 hours. The Group 5 mice were administered NC-Nic containing ova peptide, polymers, 25% of which were PLA-PEG- R848, 50% PLA, and 25% were PLA-PEG-Nic, and 0.7% of R848; of which less than 1% is released at 24 hours. Release was determined at a pH of 4.5.
The results shown in Fig. 6 demonstrate that R848 adjuvant (a TLR 7/8 agonist) contained in the NC augments humoral immune response against NC-associated antigen (groups 2-5 » group 1). Furthermore, neither fast (group 2), nor slow (group 5) release of R848 was elevated an immune response to the same level as NC releasing R848 at intermediate rate (group 3 ~ group 4 > group 2 ~ group 5).

Claims

What is claimed is:CLAIMS
1. A compound that comprises a structure as in formula (I):
Figure imgf000099_0001
wherein R1 = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a biodegradable polymer or unit thereof.
2. The compound of claim 1 , wherein the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof.
3. The compound of claim 2, wherein the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
4. A compound that comprises a structure as in formula (II):
Figure imgf000100_0001
wherein Rj = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X = C5 N, O, or S;
R6 and R7 are each independently absent, H, or substituted; and
R9, Rio, Ri 1, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
5. The compound of claim 4, wherein the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof.
6. The compound of claim 5, wherein the polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof.
7. The compound of any of claims 4-6, wherein the polymer is biodegradable.
8. The compound of any of claims 1-7, wherein Rj is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
9. The compound of any of claims 1-7, wherein Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
10. The compound of any of claims 1-7, wherein Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
11. The compound of any of claims 1 -7, wherein R1 is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
12. The compound of any of claims 1-7, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
13. The compound of any of claims 1-7, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
14. The compound of any of claims 1-7, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
15. The compound of any of claims 1-7, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
16. The compound of any of claims 1-15, wherein the polymer is insoluble in water at pH = 7.4 and at 250C.
17. The compound of any of claims 1-16, wherein the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
18. The compound of any of claims 1-17, wherein the polymer or unit thereof does not comprise polyketal or unit thereof.
19. A composition comprising the compound of any of claims 1-18.
20. The composition of claim 17, further comprising a pharmaceutically acceptable excipient.
21. A synthetic nanocarrier that comprises the compound of any of claims 1-18.
22. The synthetic nanocarrier of claim 21, wherein the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen.
23. The synthetic nanocarrier of claim 21 or 22, wherein the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature.
24. The synthetic nanocarrier of any of claims 21-23, wherein the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle.
25. A composition comprising the synthetic nanocarrier of any of claims 21-24.
26. The composition of claim 25, further comprising a pharmaceutically acceptable excipient.
27. A composition comprising a vaccine comprising the compound of any of claims 1- 18.
28. A composition comprising a vaccine comprising the composition of any of claims 19, 20, and 25-27.
29. A composition comprising a vaccine comprising the synthetic nanocarrier of any of claims 21-24.
30. A method comprising: administering the compound of any of claims 1-18 to a subject.
31. A method comprising: administering the composition of any of claims 19, 20, and 25-29 to a subject.
32. A method comprising: administering the synthetic nanocarrier of any of claims 21-24 to a subject.
33. The method of any of claims 30-32, wherein an immune response is induced or enhanced in the subject.
34. A method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000103_0001
activating a biodegradable polymer or unit thereof, and exposing the activated biodegradable polymer or unit thereof and a compound comprising a structure as in formula (III) to a base and/or solvent:
Figure imgf000104_0001
wherein Rj = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a biodegradable polymer or unit thereof.
35. The method of claim 34, wherein the biodegradable polymer or unit thereof comprises a polyester, polycarbonate, or a polyamide, or unit thereof.
36. The method of claim 35, wherein the biodegradable polymer or unit thereof comprises poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), or polycaprolactone, or unit thereof.
37. A method for making a conjugate that comprises a structure as in formula (I):
Figure imgf000105_0001
(I), comprising: exposing a composition comprising a polymer or unit thereof and a compound comprising a structure as in formula (III) to a coupling agent and base and/or solvent:
Figure imgf000105_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; and
R8 is a polymer or unit thereof.
38. A method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000106_0001
comprising: combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000106_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and R9, Rio, Rii, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound.
39. The method of claim 38, wherein the alcohol, catalyst, and compound are heated in the presence of a solvent.
40. A method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000107_0001
combining an alcohol and a compound comprising a structure as in formula (IV):
Figure imgf000107_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst.
41. The method of claim 40, wherein the alcohol, compound, and catalyst are heated while and/or after the catalyst is added.
42. A method for making a conjugate that comprises a structure as in formula (II):
Figure imgf000108_0001
comprising: combining an alcohol, a catalyst, and a compound comprising a structure as in formula (IV):
Figure imgf000109_0001
wherein Rj = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4Io form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
R5 is a polymer or unit thereof;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
Rg, R10, Rj1, and R12 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
43. The method of any of claims 38-42, wherein the alcohol is a polymer or unit thereof with a terminal hydroxyl group.
44. The method of claim 37 or 43, wherein the polymer or unit thereof comprises a polyester, polycarbonate, polyamide, or a polyether, or unit thereof.
45. The method of claim 44, wherein the polymer or unit thereof comprises, poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), polycaprolactone, or poly(ethylene glycol), or unit thereof.
46. The method of any of claims 38-45, wherein the catalyst is a phosphazine base, 1,8- diazabicycloundec-7-ene, 1 ,4,7-triazabicyclodecene, or N-methyl- 1,4,7- triazabicyclodecene.
47. The method of any of claims 34-46, wherein the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
48. The method of any of claims 34-47, wherein the polymer is insoluble in water at pH
= 7.4 and at 250C.
49. The method of any of claims 34-48, wherein the polymer or unit thereof does not comprise polyketal or unit thereof.
50. The method of any of claims 34-49, wherein R1 is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
51. The method of any of claims 34-49, wherein Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
52. The method of any of claims 34-49, wherein Rj is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
53. The method of any of claims 34-49, wherein Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
54. The method of any of claims 34-49, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
55. The method of any of claims 34-49, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
56. The method of any of claims 34-49, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
57. The method of any of claims 34-49, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
58. A compound that comprises a structure as in formula (IV):
Figure imgf000111_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and R9, Ri0, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
59. The compound of claim 58, wherein Ri is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
60. The compound of claim 58, wherein Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
61. The compound of claim 58, wherein Rj is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
62. The compound of claim 58, wherein Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
63. The compound of claim 58, wherein Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
64. The compound of claim 58, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
65. The compound of claim 58, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
66. The compound of claim 58, wherein Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
67. A composition comprising the compound of any of claims 58-66.
68. A method for making a compound that comprises a structure as in formula (IV):
Figure imgf000113_0001
(IV), comprising: combining, in the presence of a solvent and/or heat, a compound that comprises a structure as in formula (III):
a compound comprising a structure as in formula (V):
Figure imgf000113_0003
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl; Y = N or C; R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
69. The method of claim 68, wherein R1 is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
70. The method of claim 68, wherein Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
71. The method of claim 68, wherein Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
72. The method of claim 68, wherein Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
73. The method of claim 68, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
74. The method of claim 68, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
75. The method of claim 68, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
76. The method of claim 68, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
77. A method for making a conjugate that comprises a structure as in formula (VI):
Figure imgf000115_0001
(VI), comprising: combining a catalyst,a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000115_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C; R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, R11, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; and heating the alcohol, catalyst, and compound.
78. The method of claim 77, wherein the alcohol, catalyst, and compound are heated in the presence of a solvent.
79. A method for making a conjugate that comprises a structure as in formula (VI):
Figure imgf000116_0001
(VI), comprising: combining a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000116_0002
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl; Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, R10, Rn, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino; heating the alcohol and compound; and adding a catalyst.
80. The method of claim 79, wherein the alcohol, compound, and catalyst are heated while and/or after the catalyst is added.
81. A method for making a conjugate that comprises a structure as in formula (VI):
R10R9R11 R12 R12 R1R9 R10 (VI), comprising: combining a catalyst, a diol having the formula (VII):
HO-polymer-OH (VII), and a compound comprising a structure as in formula (IV):
Figure imgf000118_0001
wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4U) form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Rio, Ru, and Ri2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
82. The method of any of claims 77-81 , wherein the compound of formula (VII) is selected from the group consisting of polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co-poly(ethylene)glycol, diblock polylactide/polyglycolide-co- poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran).
83. The method of any of claims 77-82, wherein the catalyst is a phosphazine base, 1,8- diazabicycloundec-7-ene, 1 ,4,7-triazabicyclodecene, or N-methyl- 1,4,7- triazabicyclodecene.
84. The method of any of claims 77-83, wherein the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
85. The method of any of claims 77-84, wherein the polymer is insoluble in water at pH - 7.4 and at 250C.
86. The method of any of claims 77-85, wherein the polymer does not comprise polyketal or unit thereof.
87. The method of any of claims 77-85, wherein Rj is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
88. The method of any of claims 77-85, wherein Ri is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
89. The method of any of claims 77-85, wherein Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
90. The method of any of claims 77-85, wherein Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
91. The method of any of claims 77-85, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
92. The method of any of claims 77-85, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
93. The method of any of claims 77-85, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
94. The method of any of claims 77-85, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
95. A compound that comprises a structure as in formula (VI):
R3>-VN O R6 R7 O O R7 R6 O YYR3
R1OR9R11 R12 R12 R1R9 R1O (yjN wherein Ri = H, OH, SH, NH2, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino;
R2 = H, alkyl, or substituted alkyl;
Y = N or C;
R3 is absent if Y = N; or is H, alkyl, substituted alkyl, or combined with R4 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected if Y = C;
R4 is H, or substituted or unsubstituted alkyl, alkoxy, alkylthio, or alkylamino when not combined with R3 to form a carbocycle or heterocycle with thev carbon atoms of the pyridine ring to which they are connected; or is combined with R3 to form a carbocycle or heterocycle with the carbon atoms of the pyridine ring to which they are connected;
X is C, N, O, or S;
R6 and R7 are each independently H or substituted; and
R9, Ri0, Rn, and Rj2 are each independently H, a halogen, OH, thio, NH2, or substituted or unsubstituted alkyl, aryl, heterocyclic, alkoxy, aryloxy, alkylthio, arylthio, alkylamino, or arylamino.
96. The compound of claim 95, wherein the polymer is selected from the group consisting of polyketaldiols, poly(ethylene)glycol, polycaprolactone diol, diblock polylactide-co-poly(ethylene)glycol, diblock polylactide/polyglycolide-co- poly(ethylene)glycol, diblock polyglycolide-co-poly(ethylene)glycol, poly(propylene) glycol, poly(hexamethylene carbonate)diol, and poly(tetrahydrofuran).
97. The compound of claim 95 or 96, wherein the polymer has a weight average molecular weight ranging from 800 Daltons to 10,000 Daltons, as determined using gel permeation chromatography.
98. The compound of any of claims 95-97, wherein the polymer is insoluble in water at pH = 7.4 and at 250C.
99. The compound of any of claims 95-98, wherein the polymer does not comprise polyketal or unit thereof.
100. The compound of any of claims 95-99, wherein R1 is H, R2 is isobutyl, Y is C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
101. The compound of any of claims 95-99, wherein R1 is ethoxymethyl, R2 is hydroxyisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
102. The compound of any of claims 95-99, wherein Ri is ethoxymethyl, R2 is methanesulfonamidoisobutyl, Y = C, and R3 and R4 are combined to form a benzene ring with the carbon atoms of the pyridine ring to which they are connected.
103. The compound of any of claims 95-99, wherein Ri is OH, R2 is benzyl, Y = N, R3 is absent, and R4 is butoxy.
104. The compound of any of claims 95-99, wherein Y is N, Rj is OH, R2 is benzyl, R3 is absent, and R4 is butylamino.
105. The compound of any of claims 95-99, wherein Y is N, R1 is OH, R2 is benzyl, R3 is absent, and R4 is butoxy.
106. The compound of any of claims 95-99, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is benzylamino.
107. The compound of any of claims 95-99, wherein Y is N, Ri is OH, R2 is benzyl, R3 is absent, and R4 is pentyl.
108. A composition comprising the compound of any of claims 95-107.
109. The composition of claim 108, further comprising a pharmaceutically acceptable excipient.
110. A synthetic nanocarrier that comprises the compound of any of claims 95-108.
111. The synthetic nanocarrier of claim 110, wherein the synthetic nanocarrier further comprises a B cell antigen and/or a T cell antigen.
112. The synthetic nanocarrier of claim 110 or 111 , wherein the synthetic nanocarrier further comprises an antigen presenting cell (APC) targeting feature.
113. The synthetic nanocarrier of any of claims 110-112, wherein the synthetic nanocarrier is a dendrimer, buckyball, nanowire, peptide or protein-based nanoparticle, nanoparticle that comprises a combination of nanomaterials, spheroidal nanoparticle, cubic nanoparticle, pyramidal nanoparticle, oblong nanoparticle, cylindrical nanoparticle, or toroidal nanoparticle.
1 14. A composition comprising the synthetic nanocarrier of any of claims 1 10-113.
115. The composition of claim 114, further comprising a pharmaceutically acceptable excipient.
116. A composition comprising a vaccine comprising the compound of any of claims 95- 107.
117. A composition comprising a vaccine comprising the composition of any of claims 108, 109, and 114-1 16.
118. A composition comprising a vaccine comprising the synthetic nanocarrier of any of claims 110-113.
119. A method comprising: administering the compound of any of claims 95-107 to a subject.
120. A method comprising: administering the composition of any of claims 108, 109, and 114-118 to a subject.
121. A method comprising: administering the synthetic nanocarrier of any of claims 110-113 to a subject.
122. The method of any of claims 119-121, wherein an immune response is induced or enhanced in the subject.
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