WO2009126920A2 - Human serum albumin linkers and conjugates thereof - Google Patents

Human serum albumin linkers and conjugates thereof Download PDF

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Publication number
WO2009126920A2
WO2009126920A2 PCT/US2009/040259 US2009040259W WO2009126920A2 WO 2009126920 A2 WO2009126920 A2 WO 2009126920A2 US 2009040259 W US2009040259 W US 2009040259W WO 2009126920 A2 WO2009126920 A2 WO 2009126920A2
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WO
WIPO (PCT)
Prior art keywords
agent
binding moiety
receptor
linker
hsa
Prior art date
Application number
PCT/US2009/040259
Other languages
French (fr)
Other versions
WO2009126920A3 (en
Inventor
Charlotte Mcdonagh
Michael Feldhaus
Alexandra Huhalov
Original Assignee
Merrimack Pharmaceuticals, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Merrimack Pharmaceuticals, Inc. filed Critical Merrimack Pharmaceuticals, Inc.
Priority to ES09730096.6T priority Critical patent/ES2525065T3/en
Priority to AU2009234253A priority patent/AU2009234253C1/en
Priority to EA201001625A priority patent/EA022201B1/en
Priority to EP09730096.6A priority patent/EP2288715B1/en
Priority to NZ589086A priority patent/NZ589086A/en
Priority to MX2010011145A priority patent/MX2010011145A/en
Priority to CN200980121775.1A priority patent/CN102057054B/en
Priority to JP2011504215A priority patent/JP5639039B2/en
Priority to PL09730096T priority patent/PL2288715T3/en
Priority to CA2721093A priority patent/CA2721093A1/en
Priority to BRPI0911652-4A priority patent/BRPI0911652A2/en
Priority to CN2009801545099A priority patent/CN102282168A/en
Priority to US13/130,007 priority patent/US8927694B2/en
Priority to PCT/US2009/060721 priority patent/WO2010059315A1/en
Priority to JP2011536365A priority patent/JP5677972B2/en
Priority to BRPI0921586A priority patent/BRPI0921586A2/en
Publication of WO2009126920A2 publication Critical patent/WO2009126920A2/en
Publication of WO2009126920A3 publication Critical patent/WO2009126920A3/en
Priority to US12/757,801 priority patent/US20110059076A1/en
Priority to IL208598A priority patent/IL208598A/en
Priority to ZA2010/08048A priority patent/ZA201008048B/en
Priority to US14/582,719 priority patent/US20150191545A1/en
Priority to US15/251,158 priority patent/US20170204192A1/en

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/32—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products of oncogenes
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • A61K39/39533—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals
    • A61K39/3955—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals against proteinaceous materials, e.g. enzymes, hormones, lymphokines
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K51/00—Preparations containing radioactive substances for use in therapy or testing in vivo
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00—Drugs for immunological or allergic disorders
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/76—Albumins
    • C07K14/765—Serum albumin, e.g. HSA
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2863—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for growth factors, growth regulators
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/40—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against enzymes
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/545—Medicinal preparations containing antigens or antibodies characterised by the dose, timing or administration schedule
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
    • C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
    • C07K2317/62—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
    • C07K2317/622—Single chain antibody (scFv)
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
    • C07K2317/94—Stability, e.g. half-life, pH, temperature or enzyme-resistance
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C07K2319/31—Fusion polypeptide fusions, other than Fc, for prolonged plasma life, e.g. albumin
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C07K2319/70—Fusion polypeptide containing domain for protein-protein interaction
    • C07K2319/74—Fusion polypeptide containing domain for protein-protein interaction containing a fusion for binding to a cell surface receptor

Definitions

  • the invention provides a human serum albumin (HSA) linker and binding, diagnostic, and therapeutic conjugates thereof.
  • HSA linker includes two amino acid substitutions.
  • the invention further provides methods for the manufacture and administration of diagnostic and therapeutic HSA linker conjugates.
  • the serum albumins belong to a family of proteins that includes alpha-fetoprotein and human group-specific component, also known as vitamin-D binding protein.
  • the serum albumins are the major soluble proteins of the circulatory system and contribute to many vital physiological processes.
  • Serum albumin generally comprises about 50% of the total blood component by dry weight.
  • the albumins and their related blood proteins also play an important role in the transport, distribution, and metabolism of many endogenous and exogenous ligands in the human body, including a variety of chemically diverse molecules, such as fatty acids, amino acids, steroids, calcium, metals such as copper and zinc, and various pharmaceutical agents.
  • the albumin family of molecules are generally thought to facilitate transfer of many of these ligands across organ-circulatory interfaces, such as the liver, intestines, kidneys, and the brain.
  • the albumins are thus involved in a wide range of circulatory and metabolic functions.
  • Human serum albumin is a protein of about 66,500 IcD and is comprised of 585 amino acids including at least 17 disulphide bridges. As with many of the members of the albumin family, human serum albumin plays an important role in human physiology and is located in virtually every human tissue and bodily secretion. As indicated above, HSA has theability to bind and transport a wide spectrum of ligands throughout the circulatory system, including the long-chain fatty acids, which are otherwise insoluble in circulating plasma.
  • the invention features an agent that includes a human serum albumin (HSA) linker having an amino acid sequence set forth in any one of SEQ ID NOS:6-10 and first and second binding moieties selected from antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv') 2 ) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, receptors (e.g., cell surface receptors), ligands, aptamers, and biologically-active fragments thereof, in which the first binding moiety is bonded to the amino terminus of the HSA linker and the second binding moiety is bonded to the carboxy terminus of the HSA linker.
  • the first binding moiety specifically binds ErbB3 and the second binding moiety specifically binds ErbB2.
  • the HSA linker has the amino acid sequence
  • the invention features an agent that includes an HSA linker that has an amino acid sequence set forth in any one SEQ ID NOS: 1 1-15 and at least first and second binding moieties, which can be selected from antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv') 2 ) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab') 2 molecules, tandem scFv (taFv) fragments, receptors (e.g., cell surface receptors), ligands, aptamers, and biologically-active fragments thereof, wherein the first binding moiety is bonded to the amino terminus and the second binding moiety is bonded to the carboxy terminus of the sequence.
  • first and second binding moieties which can be selected from antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv') 2 ) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab') 2 molecules
  • three or more binding moieties can be included in the agent; these additional binding moities can be added to the agent, e.g., in tandem (e.g., 2, 3, 4, or 5 or more in tandem) with the first or second binding moiety.
  • the first binding moiety specifically binds ErbB3 and the second binding moiety specifically binds ErbB2.
  • the HSA linker has the amino acid sequences set forth in SEQ ID NOS: 14 or 15.
  • the invention provides an HSA linker that has an amino acid sequence having at least 90% sequence identity to the sequence set forth in SEQ ID NO:1 , and a serine residue at position 34 and a glutamine residue at position 503 of the amino acid sequence set forth in SEQ ID NO: 1.
  • the amino acid sequence has at least 95% sequence identity to the sequence set forth in SEQ ID NO: 1 .
  • the HSA linker has the amino acid sequence set forth in SEQ ID NO: 1.
  • the invention features an agent that includes an HSA linker having at least 90% amino acid sequence identity to the sequence set forth in SEQ ID NO:1 and at least a first binding moiety.
  • the agent includes a first polypeptide connector that binds the first binding moiety to the HSA linker.
  • the invention features an agent that includes an HSA linker having an amino acid sequence set forth in any one of SEQ ID NOS: 11-15, or a fragment or variant of any one of these sequences, and at least a first binding moiety.
  • the agent further includes a first polypeptide connector (e.g., AAS, AAQ, or AAAL) that binds the first binding moiety to the amino or carboxy terminus of the HSA linker.
  • a first polypeptide connector e.g., AAS, AAQ, or AAAL
  • the first connector covalently binds the first binding moiety to the HSA linker.
  • the agent further includes at least a second binding moiety.
  • the agent further includes a second polypeptide connector (e.g., AAS, AAQ, or AAAL) that binds the second binding moiety to the LISA linker.
  • the second connector binds the second binding moiety to the amino or carboxy terminus of the HSA linker.
  • the second connector covalently binds the second binding moiety to the HSA linker.
  • the agent further includes three or more binding moieties which are included in tandem with the first or second binding moiety; the three or more binding moieties can further include a connector sequence that joins the three or more binding moieties to the first or second binding moiety and to each other.
  • the agent includes a first polypeptide connector that covalently binds a first binding moiety to the amino terminus of the HSA linker and a second polypeptide connector that covalently binds a second binding moiety to the carboxy terminus of the HSA linker.
  • the first connector has the amino acid sequence AAS or AAQ and the second connector has the amino acid sequence set forth in SFQ ID NO:5.
  • the first or second binding moiety is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv') 2 ) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab') 2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, aptamer, or biologically- active fragment thereof.
  • the agents of the invention include combinations of these different types of binding moities.
  • at least the first or second binding moiety is a human or humanized single-chain Fv molecule.
  • one or more of the first or second binding moiety is or specifically binds to a protein selected from the group consisting of an insulin- like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF- ⁇ ), TNF- ⁇ , folate receptor (FOLR), fo
  • IGFlR insulin-like growth factor 1 receptor
  • IGF insulin-like growth factor
  • IGF insulin-like growth factor
  • c-met
  • one or more of the first or second binding moiety is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor).
  • ErbB erythroblastic leukemia viral oncogene homolog
  • one or more of the first or second binding moiety is or specifically binds to alpha-fctoprotein (AFP) or an interferon, or a biologically- active fragment thereof.
  • one or more of the first or second binding moiety is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, ctanercept, pertuzumab, cetuximab, panitumumab, or anakinra.
  • the agent is conjoined to a diagnostic, a therapeutic agent, or both.
  • the diagnostic agent is a detectable label, such as a radioactive, fluorescent, or heavy metal label.
  • the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I or II inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
  • Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistaLin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives.
  • the agent is admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
  • a pharmaceutically acceptable carrier in one embodiment, the agent exhibits an in vivo half-life of between 6 hours and 7 days. In another embodiment, the agent exhibits an in vivo half-life greater than 8 hours.
  • the invention features a method for treating a mammal having a disease or disorder by administering any one of the HSA agents described in the first five aspects.
  • the disease or disorder is associated with cellular signaling through a cell surface receptor.
  • the mammal is a human.
  • the disease or disorder is a proliferative or autoimmune disease.
  • Proliferative diseases include melanoma, clear cell sarcoma, head and neck cancer, bladder cancer, breast cancer, colon cancer, ovarian cancer, endometrial cancer, gastric cancer, pancreatic cancer, renal cancer, prostate cancer, salivary gland cancer, lung cancer, liver cancer, skin cancer, and brain cancer.
  • Autoimmune diseases include multiple sclerosis, psoriasis, myasthenia gravis, uveitis, systemic lupus erythematosus, and rheumatoid arthritis.
  • the HSA agent is administered in combination with one or more therapeutic agents, such as an antineoplastic agent.
  • the invention features a method for making an HSA linker agent by bonding at least a first binding moiety to the amino terminus and a second binding moiety to the carboxy terminus of the amino acid sequence set forth in any one of SEQ ID NOS: 1, 3, or 6-15, or a sequence having at least 90%, 95%, 97%, or 100% sequence identity to a sequence set forth in any one of SEQ ID NOS: 1, 3, or 6-15.
  • the first or second binding moiety is covalently joined to the amino or carboxy terminus of an HSA linker.
  • a third or additional binding moiety e.g., a fourth, fifth, sixth, seventh, eighth, ninth, or tenth binding moiety
  • a third or additional binding moiety is covalently joined in tandem with the first or second binding moiety to the amino or carboxy terminus of the HSA linker.
  • one or more of the first or second binding moiety is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv') 2 ) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab') 2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, or aptamer.
  • the first or second binding moiety is a human or humanized single-chain Fv molecule.
  • one or more of the first or second binding moiety is or specifically binds to insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF- ⁇ ), TNF- ⁇ , folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor,
  • IGFlR insulin-like growth factor 1 receptor
  • IGF insulin-like
  • one or more of the first or second binding moiety is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor).
  • ErbB erythroblastic leukemia viral oncogene homolog
  • one or more of the first or second binding moiety is or specifically binds to alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
  • AFP alpha-fetoprotein
  • one or more of the first or second binding moiety is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, or anakinra.
  • the agent is conjoined to a diagnostic or therapeutic agent.
  • the diagnostic agent is a detectable label, such as a radioactive, bioluminescent, fluorescent, heavy metal, or epitope tag.
  • the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I and II inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
  • Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives.
  • the agent is admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
  • the invention features a method for making an HSA agent by substituting one or more surface-exposed amino acid residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1, 3, and 6-15 with a substitute amino acid capable of chemical modification that allows conjugation of a diagnostic or therapeutic agent.
  • the substitute amino acid is cysteine and the surface exposed amino acid residues are serine or threonine.
  • the chemical modification results in a covalent bond between the substitute amino acid and the diagnostic or therapeutic agent.
  • the surface-exposed amino acid residues is threonine at position 496, serine at position 58, threonine at position 76, threonine at position 79, threonine at position 83, threonine at position 125, threonine at position 236, serine at position 270, serine at position 273, serine at position 304, serine at position 435, threonine at position 478, threonine at position 506, or threonine at position 508.
  • the invention features a method for making an HSA agent by substituting one or more of the residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1 , 3, and 6-15 with an asparagine, serine, or threonine, thereby incorporating a glycosylation site within the HSA agent.
  • the invention features a method for making an HSA agent by substituting one or more of the asparagine, serine, or threonine residues in the amino acid sequences set forth in any one of SEQ ID NOS:1, 3, and 6-15 with any amino acid other than asparagine, serine, or threonine, thereby removing a glycosylation site from the HSA agent.
  • the invention features an agent that has at least 90% sequence identity to one of the amino acid sequences set forth in SEQ ID NOS:16-25. In one embodiment, the agent has at least 95% sequence identity to one of the amino acid sequences set forth in SEQ ID NOS: 16- 25. In another embodiment, the agent has one of the amino acid sequences set forth in SEQ ID NOS:16-25. In a further embodiment, the agent is conjoined to a diagnostic or therapeutic agent. Diagnostic agents include detectable labels, such as a radioactive, bioluminescent, fluorescent, or heavy metal labels, or epitope tags.
  • Fluorescent molecules that can serve as detectable labels include green fluorescent protein (GFP), enhanced GFP (eGFP), yellow fluorescent protein (YFP), cyan fluorescent protein (CFP), red fluorescent protein (RFP), and dsRed.
  • GFP green fluorescent protein
  • eGFP enhanced GFP
  • YFP yellow fluorescent protein
  • CFP cyan fluorescent protein
  • RFP red fluorescent protein
  • dsRed dsRed
  • the bioluminescent molecule is luciferase.
  • the epitope tag is c-myc, hemagglutinin, or a histidine tag.
  • the therapeutic agent is a cytotoxic polypeptide such as cytochrome c, caspase 1-10, granzyme A or B, tumor necrosis factor-alpha (TNF- ⁇ ), TNF- ⁇ , Fas, Fas ligand, Fas-associated death doman-like IL- l ⁇ converting enzyme (FLICE), TRAIL/APO2L, TWE ⁇ K/APO3L, Bax, Bid, Bik, Bad, Bak, RICK, vascular apoptosis inducing proteins 1 and 2 (VAPl and VAP2), pierisin, apoptosis-inducing protein (AIP), ⁇ L-l ⁇ propiece polypeptide, apoptin, apoptin-associated protein 1 (AAP-I), endostatin, angiostatin, and biologically-active fragments thereof.
  • cytotoxic polypeptide such as cytochrome c, caspase 1-10, granzyme A or B, tumor necrosis factor-al
  • An agent of the invention can be combined with one or more therapeutic agents such as cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
  • therapeutic agents such as cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, may
  • the first and second binding moieties specifically bind the same target molecule. In another embodiment of any aspect of the invention, the first and second binding moieties (and, if present, one or more of the third or further binding moiety) specifically bind different target molecules. In a further embodiment of any aspect of the invention, the first and second binding moieties (and, if present, one or more of the third or further binding moiety) specifically bind different epitopes on the same target molecule.
  • the invention features a polypeptide linker that has amino acid residues 25-44 and 494-513 of the amino acid sequence set forth in SEQ ID NO:1.
  • the polypeptide linker has amino acid residues 25-70 and 450-513 of the amino acid sequence set forth in SEQ ID NO:1.
  • the polypeptide linker has amino acid residues 15-100 and 400-520 of the amino acid sequence set forth in SEQ ID NO:1.
  • the polypeptide linker has amino acid residues 10-200 and 300-575 of the amino acid sequence set forth in SEQ ID NO: 1.
  • the polypeptide linker has amino acid residues 5-250 and 275-580 of the amino acid sequence set forth in SEQ ID NOr I .
  • the polypeptide linker includes at least a first binding moiety.
  • the polypeptide linker includes at least a first polypeptide connector that binds the first binding moiety to the amino or carboxy terminus of the polypeptide linker.
  • the first polypeptide connector covalently binds the first binding moiety to the polypeptide linker.
  • the polypeptide linker includes a second binding moiety.
  • the polypeptide linker includes a second polypeptide connector that binds the second binding moiety to the polypeptide linker.
  • the second connector binds the second binding moiety to the amino or carboxy terminus of the polypeptide linker.
  • the second connector covalently binds the second binding moiety to the polypeptide linker.
  • the polypeptide linker includes a third, fourth, fifth, sixth, seventh, eighth, ninth, or tenth binding moiety.
  • these additional binding moieties are present in tandem with one or both of the first or second binding moiety.
  • a polypeptide connector e.g., AAS, AAQ, or AAAL
  • the polypeptide linker includes a first polypeptide connector that covalently binds a first binding moiety to the amino terminus of the polypeptide linker and a second polypeptide connector that covalently binds a second binding moiety to the carboxy terminus of the polypeptide linker.
  • the first connector has the amino acid sequence AAS or AAQ and the second connector has the amino acid sequence set forth in SEQ ID NO:5.
  • one or more of the first or second binding moiety is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv') 2 ) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab') 2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, aptamer, or biologically-active fragment thereof.
  • one or more of the first or second binding moiety is a human or humanized single- chain Fv molecule.
  • one or more of the first or second binding moiety is or specifically binds to a protein selected from the group consisting of an insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF- ⁇ ), TNF- ⁇ , folate receptor (FOLR), folate, transferrin receptor (TfR),
  • IGFlR insulin-like growth factor 1 receptor
  • IGF2R insulin-like growth factor 1 receptor
  • the first or second binding moiety is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor).
  • ErbB erythroblastic leukemia viral oncogene homolog
  • one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
  • AFP alpha-fetoprotein
  • one or more of the first or second binding moiety is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, or anakinra.
  • the polypeptide linker is conjoined to a diagnostic, a therapeutic agent, or both.
  • the diagnostic agent is a detectable label, such as a radioactive, fluorescent, or heavy metal label.
  • the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I or Il inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
  • Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, calcachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives.
  • the polypeptide linker is admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
  • the polypeptide linker exhibits an in vivo half-life of between 6 hours and 7 days. In a further embodiment, the polypeptide linker exhibits an in vivo half-life greater than 8 hours.
  • a thirteenth aspect of the invention features an agent of any of the prior aspects of the invention (one through twelve), in which the HSA polypeptide linker sequence is replaced by another polypeptide linker sequence.
  • the polypeptide linker sequence could be a mammalian, non-human serum albumin polypeptide sequence, such as, e.g., a bovine, murine, feline, and canine serum albumin (BSA) polypeptide sequence.
  • this polypeptide linker sequence is between 5 and 1,000 amino acids in length, e.g., 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 200, 300, 400, 500, 600, 700, 800, or 900 amino acids in length, or any number of amino acids within this range.
  • the polypeptide linker sequence includes a single amino acid (including, but not limited to, e.g., glycine, alanine, serine, glutamine, leucine, and valine), or combinations of amino acids.
  • the HSA polypeptide linker sequence is replaced by an alpha- fetoprotein polypeptide (AFP) polypeptide sequence, e.g., mammalian AFP polypeptide sequence, such as a human, murine, bovine, or canine AFP polypeptide sequence.
  • AFP linker sequence of the agent can correspond to the full-length human AFP polypeptide sequence (a.a.
  • the AFP polypeptide linker sequence contains at least 5 to 8 contiguous amino acids, preferably at least 10, 20, or 50 contiguous amino acids, more preferably at least 100 contiguous amino acids, and most preferably at least 200, 300, 400, or more contiguous amino acids of SEQ ID NO: 58, or has at least 90% sequence identity (e.g., at least 95%, 97%, 99%, or more sequence identity) to a continguous polypeptide sequence of SEQ ID NO: 58 having one or more of these lengths.
  • an AFP polypeptide linker sequence having 90% sequence identity to a 34-mer human AFP peptide corresponding to amino acids 446-479 of SEQ ID NO: 58 may contain up to 3 amino acids altered from the 446-479 segment of SEQ ID NO: 58.
  • sequence deviation in biologically active human AFP fragments is found in, e.g., U.S. Patent No. 5,707,963 (incorporated by reference herein), which discloses a 34-amino acid fragment of human AFP (SEQ ID NO: 59) with flexibility at two amino acid residues (amino acid 9 and 22 of SEQ ID NO: 59).
  • AFP polypeptide linker sequences include, e.g., amino acids 19-198 of SEQ ID NO: 58 (human AFP Domain I), amino acids 217-408 of SEQ ID NO: 58 (human AFP Domain II), amino acids 409-609 of SEQ ID NO: 58 (human AFP Domain III), amino acids 19-408 of SEQ ID NO: 58 (human AFP Domain I+II), amino acids 217-609 of SEQ ID NO: 58 (human AFP Domain II+III), and amino acids 285-609 of SEQ TD NO: 58 (human AFP Fragment I).
  • the human AFP polypeptide linker sequence is an 8-amino acid sequence that includes amino acids 489-496 (i.e., EMTPVNPG) of SEQ ID NO: 58.
  • kits that include any of the HSA linkers, HSA linker agents, or any other agents described in the first, second, third, fourth, fifth, eleventh, twelfth, and thirteenth aspects of the invention.
  • the kits further include instructions to allow a practitioner (e.g., a physician, nurse, or patient) to administer the compositions and agents contained therein.
  • the kits include multiple packages of a single- or multi-dose pharmaceutical composition containing an effective amount of an agent of the invention, e.g,.
  • an HSA linker of the invention that includes, e.g., one or more binding moieties (e.g., antibodies or antibody fragments (e.g., scFv)), diagnostic agents (e.g., radionuclide or chelating agents), and/or therapeutic agents (e.g., cytotoxic or immunomodulatory agents).
  • binding moieties e.g., antibodies or antibody fragments (e.g., scFv)
  • diagnostic agents e.g., radionuclide or chelating agents
  • therapeutic agents e.g., cytotoxic or immunomodulatory agents
  • instruments or devices necessary for administering the pharmaceutical composition(s) may be included in the kits.
  • a kit of this invention may provide one or more pre-filled syringes containing an effective amount of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
  • kits may also include additional components such as instructions or administration schedules for a patient suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) to use the pharmaceutical composition(s) containing, e.g., an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
  • a disease or condition e.g., a cancer, autoimmune disease, or cardiovascular disease
  • pharmaceutical composition(s) containing, e.g., an HSA linker of the invention e.g., an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
  • antibody as used interchangeably herein, includes whole antibodies or immunoglobulins and any antigen-binding fragment or single chains thereof.
  • Antibodies can be mammalian (e.g., human or mouse), humanized, chimeric, recombinant, synthetically produced, or naturally isolated. In most mammals, including humans, antibodies have at least two heavy (H) chains and two light (L) chains connected by disulfide bonds.
  • Each heavy chain consists of a heavy chain variable region (abbreviated herein as V H ) and a heavy chain constant region.
  • the heavy chain constant region consists of three domains, C H I , C H 2, and C H 3 and a hinge region between C H I and C H 2.
  • Each light chain consists of a light chain variable region (abbreviated herein as V L ) and a light chain constant region.
  • the light chain constant region consists of one domain, C L .
  • the VH and V L regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDR), interspersed with regions that are more conserved, termed framework regions (FR).
  • CDR complementarity determining regions
  • FR framework regions
  • Each V H and V L is composed of three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FRl , CDRl, FR2, CDR2, FR3, CDR3, FR4.
  • the variable regions of the heavy and light chains contain a binding domain that interacts with an antigen.
  • the constant regions of the antibodies may mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (e.g., effector cells) and the first component (CIq) of the classical complement system.
  • Antibodies of the present invention include all known forms of antibodies and other protein scaffolds with antibody-like properties.
  • the antibody can be a human antibody, a humanized antibody, a bispecific antibody, a chimeric antibody, or a protein scaffold with antibody-like properties, such as fibronectin or ankyrin repeats.
  • the antibody also can be a Fab, Fab'2, scFv, SMIP, diabody, nanobody, aptamers, or a domain antibody.
  • the antibody can have any of the following isotypes: IgG (e.g., IgGl, IgG2, IgG3, and IgG4), IgM, IgA (e.g., IgAl, IgA2, and IgAsec), IgD, or IgE.
  • IgG e.g., IgGl, IgG2, IgG3, and IgG4
  • IgM e.g., IgGl, IgG2, IgG3, and IgG4
  • IgM e.g., IgAl, IgA2, and IgAsec
  • IgD e.gAl, IgA2, and IgAsec
  • Antibodies that can be used as binding moieties, as defined herein, in combination with an HSA linker of the invention include, but are not limited to, natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, and panitumumab.
  • antibody fragment refers to one or more fragments of an antibody that retain the ability to specifically bind to an antigen (e.g., ErbB2).
  • an antigen e.g., ErbB2
  • the antigen-binding function of an antibody can be performed by fragments of a full-length antibody.
  • binding fragments encompassed within the term "antigen-binding portion" of an antibody include but are not limited to: (i) a Fab fragment, a monovalent fragment consisting of the V L , V H , C L , and C H I domains; (ii) a F(ab')2 fragment, a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting of the V H and C H I domains; (iv) a Fv fragment consisting of the V L and V H domains of a single arm of an antibody, (v) a dAb including V H and V L domains; (vi) a dAb fragment (Ward et al, Nature 341:544-546 (1989)), which consists of a V H domain; (vii) a dAb which consists of a V H or a V L domain; (viii) an isolated complementarity determining region (CDR); and (
  • V L and V H are coded for by separate genes, they can be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the V L and V H regions pair to form monovalent molecules (known as single chain Fv (scFv); see e.g., Bird et al, Science 242:423-426 (1988) and Huston et al, Proc. Natl. Acad. Sci. USA 85:5879-5883
  • scFv single chain Fv
  • Antibody fragments are obtained using conventional techniques known to those with skill in the art, and the fragments are screened for utility in the same manner as are intact antibodies.
  • Antibody fragments can be produced by recombinant DNA techniques, or by enzymatic or chemical cleavage of intact immunoglobulins.
  • autoimmune disease is meant a disease in which an immune system response is generated against self epitopes or antigens.
  • autoimmune diseases include, but are not limited to, alopecia areata, ankylosing spondylitis, antiphospholipid syndrome, autoimmune Addison's disease, autoimmune hemolytic anemia, autoimmune hepatitis, Behcet's disease, bullous pemphigoid, cardiomyopathy, celiac Sprue-dermatitis, chronic fatigue immune dysfunction syndrome (CFIDS), chronic inflammatory demyelinating polyneuropathy, Churg-Strauss syndrome, cicatricial pemphigoid, CREST syndrome, cold agglutinin disease, Crohn's disease, discoid lupus, essential mixed cryoglobulinemia, fibromyalgia-fibromyositis, Grave's disease, Guillain-Barre syndrome, Hashimoto's thyroiditis, hypothyroidism, idiopathic pulmonary fibrosis, idiopathic thrombocytopenia purpura (ITP), IgA ne,
  • binding moiety any molecule that specifically binds to a target epitope, antigen, ligand, or receptor. Binding moieties include but are not limited to antibodies (e.g., monoclonal, polyclonal, recombinant, humanized, and chimeric antibodies), antibody fragments (e.g., Fab fragments, Fab'2, scFv antibodies, SMIP, domain antibodies, diabodics, minibodies, scFv- Fc, affibodies, nanobodies, and domain antibodies), receptors, ligands, aptamers, and other molecules having a known binding partner.
  • antibodies e.g., monoclonal, polyclonal, recombinant, humanized, and chimeric antibodies
  • antibody fragments e.g., Fab fragments, Fab'2, scFv antibodies, SMIP, domain antibodies, diabodics, minibodies, scFv- Fc, affibodies, nanobodies
  • biologically-active is meant that a molecule, including biological molecules, such as nucleic acids, peptides, polypeptides, and proteins, exerts a physical or chemical activity on itself or other molecule.
  • a “biologically-active” molecule may possess, e.g., enzymatic activity, protein binding activity (e.g., antibody interactions), or cytotoxic activities are “biologically-active.”
  • chimeric antibody refers to an immunoglobulin or antibody whose variable regions derive from a first species and whose constant regions derive from a second species. Chimeric antibodies can be constructed, for example, by genetic engineering, from immunoglobulin gene segments belonging to different species (e.g., from a mouse and a human).
  • connector or "polypeptide connector” is meant an amino acid sequence of 2 to 20 residues in length that is covalently attached to one or both of the amino or carboxy termini of an HSA linker of the invention, or is covalently attached to one or more residues of an HSA linker of the invention (e.g., a residue between the amino and carboxy terminal residues).
  • the polypeptide connector attached to the amino terminus of an HSA linker has the amino acid sequence "AAS" or "AAQ” and the connector attached to the carboxy terminus has the amino acid sequence "AAAL” (SEQ ID NO:5).
  • an agent of the invention e.g., an HSA linker bonded with one or more binding moieties or diagnostic or therapeutic agents with or without a connector sequence
  • an agent of the invention e.g., an HSA linker bonded with one or more binding moieties or diagnostic or therapeutic agents with or without a connector sequence
  • sufficient to produce a desired result for example, killing a cancer cell, reducing tumor cell proliferation, reducing inflammation in a diseased tissue or organ, or labeling a specific population of cells in a tissue, organ, or organism (e.g., a human).
  • human antibody is intended to include antibodies, or fragments thereof, having variable regions in which both the framework and CDR regions are derived from human germline immunoglobulin sequences as described, for example, by Kabat et ai, ⁇ Sequences of proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242 (1991)). Furthermore, if the antibody contains a constant region, the constant region also is derived from human germline immunoglobulin sequences.
  • the human antibodies may include amino acid residues not encoded by human germline immunoglobulin sequences (e.g., mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo).
  • human antibody is not intended to include antibodies in which CDR sequences derived from the germline of another mammalian species, such as a mouse, have been grafted onto human framework sequences (i.e., a humanized antibody or antibody fragment).
  • humanized antibody refers to any antibody or antibody fragment that includes at least one immunoglobulin domain having a variable region that includes a variable framework region substantially derived from a human immunoglobulin or antibody and complementarity determining regions (e.g., at least one CDR) substantially derived from a non-human immunoglobulin or antibody.
  • an "inflammatory signaling inhibitor” or “ISI” is an agent that decreases the binding between a pro-inflammatory cytokine (e.g., TNF-alpha, TNF-beta, or IL-I) and its receptor (e.g., TNF receptor 1 or 2, or IL-I receptor, respectively); decreases the binding of activating molecules to pro-inflammatory cell surface signaling molecules (e.g., CD20, CD25, CTLA -4, CD80/CD86, or CD28); or decreases the downstream activation of, or activity of, intracellular signaling molecules that are activated following the binding of pro-inflammatory cytokines to their receptors or the binding of activating molecules to pro-inflammatory cell surface signaling molecules (e.g., an agent that decreases the activation of, or activity of, signaling molecules in the p38 M ⁇ PK signaling pathway).
  • a pro-inflammatory cytokine e.g., TNF-alpha, TNF-beta, or IL-I
  • its receptor e.g
  • the decrease in binding between a pro-inflammatory cytokine and its receptor, the decrease in binding of an activating molecule to a pro-inflammatory cell surface signaling molecule, or the decrease in intracellular signaling which occurs following the binding of pro-inflammatory cytokines to their receptors or activating molecules to pro-inflammatory cell surface signaling molecules is by at least about 10%, preferably by 20%, 30%, 40%, or 50%, more preferably by 60%, 70%, 80%, 90% or more (up to 100%).
  • An ISI may act by reducing the amount of pro-inflammatory cytokine (e.g., TNF-alpha, TNF-beta, or IL-I) freely available to bind the receptor.
  • an ISI may be a soluble pro-inflammatory cytokine receptor protein (e.g., a soluble TNF receptor fusion protein such as etanercept (ENB REL®) or lenercept), or a soluble proinflammatory cell surface signaling molecule (e.g., a soluble CTLA -4 (abatacept)), or an antibody directed against a pro-inflammatory cytokine or a pro-inflammatory cell surface signaling molecule (e.g., an anti-TNF antibody, such as adalimumab, certolizumab, inflixamab, or golimumab; an anti- CD20 antibody, such as rituximab; or TRU-015 (TRUBION®)).
  • a soluble pro-inflammatory cytokine receptor protein e.g., a soluble TNF receptor fusion protein such as etanercept (ENB REL®) or lenercept
  • a soluble proinflammatory cell surface signaling molecule e.
  • an TSI may act by disrupting the ability of the endogenous wild-type pro-inflammatory cytokine or the proinflammatory cell surface signaling molecule to bind to its receptor (e.g., TNF receptor 1 or 2, IL-I receptor, or CDl Ia (e.g., efalizumab (RAPTIVA®, Genentech))).
  • its receptor e.g., TNF receptor 1 or 2, IL-I receptor, or CDl Ia (e.g., efalizumab (RAPTIVA®, Genentech)
  • TNF receptor 1 or 2 e.g., efalizumab (RAPTIVA®, Genentech)
  • XENP345 a pegylated version of TNF variant A145R/I97T
  • XproTMl 595 e.g., XproTMl 595
  • a dominant negative IL-I variant is anakinra (KINERET®), which is a soluble form of IL-I that binds to the IL- 1 receptor without activating intracellular signaling pathways.
  • Inflammatory signaling inhibitors which can be used in the present invention, are also small molecules which inhibit or reduce the signaling pathways downstream of pro-inflammatory cytokine or pro-inflammatory cell surface signaling molecules (e.g., DE 096).
  • ISIs of this kind include inhibitors of p38 MAP kinase, e.g., 5-amino-2-carbonylthiopene derivatives (as described in WO 04/089929, herein incorporated); ARRY-797; BIRB 796 BS, (l -5-tert-butyl-2-p-tolyl-2H-pyrazol-3-yl)-3-[4- 2(morpholin-4-yl-ethoxy)-naphtalen-l-yl]-urea); CHR-3620; CNI-1493; FR-167653 (Fujisawa Pharmaceutical, Osaka, Japan); ISIS 101757 (Isis Pharmaceuticals); ML3404; NPC31 145;
  • an ISI may interfere with the processing of a pro-inflammatory cytokine (e.g., TNF-alpha and TNF-beta) from its membrane bound form to its soluble form.
  • Inhibitors of TACE are ISIs of this class. Examples of inhibitors of TACE include BB-1 101, BB- 3103, BMS-561392, butynyloxyphenyl ⁇ -sulfone piperidine hydroxomates, CH4474, DPC333, DPH-067517, GM6001, GW3333, Ro 32-7315, TAPI-I , T ⁇ PI-2, and TMI 005.
  • Additional examples of ISIs include short peptides derived from the E. coli heat shock proteins engineered for disease-specific immunomodulatory activity (e.g., dnaJPl).
  • integrin antagonist any agent that reduces or inhibits the biological activity of an integrin molecule (e.g., a reduction or inhibition of at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, or more relative to the biological activity in the absence of the integrin antagonist), such as the ⁇ 4 subunit of an integrin molecule.
  • the agent may act directly or indirectly on the ⁇ 4 integrin subunit (NCBI Accession No. P13612; Takada et al, EMBO J.
  • Non-limiting exemplary integrin antagonists suitable for use with the present invention may include proteins, blocking peptides, antibodies, such as natalizumab (TYSABRI®), and small molecule inhibitors.
  • ⁇ 4 integrin antagonists include, but are not limited to, natalizumab (Elan/Biogen pout; see, e.g., U.S. Patent Nos. 5,840,299; 6,033,665; 6,602,503; 5,168,062; 5,385,839; and 5,730,978; incorporated by reference herein), oMEPUPA-V (Biogen; U.S. Patent No.
  • ⁇ 4 integrin antagonists include the small molecules described in U.S. Patent Nos.
  • ⁇ 4 integrin antagonists include the phenylalanine derivatives described in: U.S. Patent Nos.
  • ⁇ .4 integrin antagonists include the peptides, and the peptide and semi-peptide compounds described in, e.g., PCT Publication Nos.
  • An additional example of an ⁇ 4 integrin antagonist is the pegylated molecule described in U.S. Patent Application Publication No. 2007/066533 (herein incorporated by reference).
  • Examples of antibodies that are ⁇ 4 integrin antagonists include those described in, e.g., PCT Publication Nos. WO 93/13798; WO 93/15764; WO 94/16094; and WO 95/19790. Additional examples of ⁇ 4 integrin antagonists are described herein.
  • interferon is meant a mammalian (e.g., a human) interferon -alpha, -beta, -gamma, or - tau polypeptide, or biologically-active fragment thereof, e.g., IFN- ⁇ (e.g., IFN- ⁇ -la; see U.S. Patent Application No. 20070274950, incorporated herein by reference in its entirety), IFN- ⁇ -lb, IFN- ⁇ -2a (see PCT Application No. WO 07/044083, herein incorporated by reference in its entirety), and IFN- ⁇ -2b), IFN- ⁇ (e.g., described in U.S. Patent No.
  • IFN-b-la AVONEX® and REBIF®
  • IFN- ⁇ -lb BETASERON®, as described in U.S. Patent Nos. 4,588,585; 4,959,314; 4,737,462; and 4,450,103; incorporated by reference in their entirety
  • IFN-g, and IFN-t as described in U.S. Patent No. 5,738,845 and U.S. Patent Application Publication Nos. 20040247565 and 20070243163; incorporated by reference in their entirety).
  • HSA linker conjugate is meant a human serum albumin (HSA) linker protein of the invention in combination with one or more binding moieties, polypeptide connectors, diagnostic agents, or therapeutic agents.
  • HSA human serum albumin
  • monoclonal antibody refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to conventional (polyclonal) antibody preparations which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen.
  • Monoclonal antibodies can be prepared using any art recognized technique and those described herein such as, for example, a hybridoma method, as described by Kohler et al., Nature 256:495 (1975), a transgenic animal ⁇ e.g., Lonberg et al, Nature 368(6474):856-859 (1994)), recombinant DNA methods ⁇ e.g., U.S. Pat. No. 4,816,567), or using phage, yeast, or synthetic scaffold antibody libraries using the techniques described in, for example, Clackson et al., Nature 352:624-628 (1991) and Marks et al., J. MoI. Biol. 222:581-597 (1991).
  • pharmaceutically acceptable carrier is meant a carrier which is physiologically acceptable to the treated mammal while retaining the therapeutic properties of the compound with which it is administered.
  • physiological saline is physiological saline.
  • physiologically acceptable carriers and their formulations are known to one skilled in the art and described, for example, in Remington 's Pharmaceutical Sciences, (18 th edition), ed. A. Gennaro, 1990, Mack Publishing Company, Easton, PA incorporated herein by reference.
  • proliferative disease or “cancer” is meant any condition characterized by abnormal or unregulated cell growth.
  • proliferative diseases include, for example, solid tumors such as: sarcomas (e.g., clear cell sarcoma), carcinomas (e.g., renal cell carcinoma), and lymphomas; tumors of the breast, colon, rectum, lung, oropharynx, hypopharynx, esophagus, stomach, pancreas, liver, bilecyst, bile duct, small intestine, urinary system (including the kidney, bladder, and epithelium of the urinary tract), female genital system (including the uterine neck, uterus, ovary, chorioma, and gestational trophoblast), male genital system (including the prostate, seminal vesicle, and testicles), endocrine glands (including the thyroid gland, adrenal gland, and pituitary body), skin (including angioma,
  • recombinant antibody refers to an antibody prepared, expressed, created, or isolated by recombinant means, such as (a) antibodies isolated from an animal (e.g., a mouse) that is transgenic or transchromosomal for immunoglobulin genes (e.g., human immunoglobulin genes) or a hybridoma prepared therefrom, (b) antibodies isolated from a host cell transformed to express the antibody, e.g., from a transfcctoma, (c) antibodies isolated from a recombinant, combinatorial antibody library (e.g., containing human antibody sequences) using phage, yeast, or synthetic scaffold display, and (d) antibodies prepared, expressed, created, or isolated by any other means that involve splicing of immunoglobulin gene sequences (e.g., human immunoglobulin genes) to other DNA sequences.
  • a host cell transformed to express the antibody e.g., from a transfcctoma
  • combinatorial antibody library e.g.,
  • binding moiety e.g., an antibody, antibody fragment, receptor, ligand, or small molecule portion of an agent of the invention
  • a target molecule e.g., a secreted target molecule, such as a cytokine, chemokine, hormone, receptor, or ligand
  • a cell or tissue bearing the target molecule e.g., a cell surface antigen, such as a receptor or ligand
  • a certain degree of non-specific interaction may occur between a binding moiety and a non-target molecule (present alone or in combination with a cell or tissue).
  • specific binding may be distinguished as mediated through specific recognition of the target molecule.
  • Specific binding results in a stronger association between the binding moiety (e.g., an antibody) and e.g., cells bearing the target molecule (e.g., an antigen) than between the binding moiety and e.g., cells lacking the target molecule.
  • Specific binding typically results in greater than 2-fold, preferably greater than 5-fold, more preferably greater than 10-fold and most preferably greater than 100-fold increase in amount of bound binding moiety (per unit time) to e.g., a cell or tissue bearing the target molecule or marker as compared to a cell or tissue lacking that target molecule or marker.
  • Binding moieties bind to the target molecule or marker with a dissociation constant of e.g., less than 10 "6 M, more preferably less than 10 "7 M, 10 '8 M, 10 "9 M, 10 "10 M, 10 "11 M, or 10 "12 M, and most preferably less than 10 "13 M, 10 "14 M, or 10 "15 M.
  • Specific binding to a protein under such conditions requires a binding moiety that is selected for its specificity for that particular protein.
  • a variety of assay formats are appropriate for selecting binding moieties (e.g., antibodies) capable of specifically binding to a particular target molecule.
  • solid-phase ELISA immunoassays are routinely used to select monoclonal antibodies specifically immunoreactive with a protein.
  • polynucleotide or polypeptide sequence is the same as the reference sequence or has a specified percentage of nucleotides or amino acid residues that are the same at the corresponding locations within the reference sequence when the two sequences are optimally aligned.
  • an amino acid sequence that is "substantially identical" to a reference sequence has at least about 60% identity, preferably 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher percentage identity (up to 100%) to the reference sequence (e.g., the HSA amino acid sequence as set forth in SEQ ID NO: 1, or a fragment thereof), when compared and aligned for maximum correspondence over the full length of the reference sequence as measured using a BLAST or BLAST 2.0 sequence comparison algorithms with default parameters, or by manual alignment and visual inspection (see, e.g., NCBI web site).
  • the reference sequence e.g., the HSA amino acid sequence as set forth in SEQ ID NO: 1, or a fragment thereof
  • surface-exposed amino acid residue or “surface-exposed” is meant an amino acid residue that is present on the exterior face of the folded and conformationally-correct tertiary structure of a HSA polypeptide.
  • Such residues can be substituted with e.g., other, chemically- reactive, amino acids (e.g., cysteine) to allow for site-specific conjugation of diagnostic or therapeutic agents.
  • surface-exposed amino acid residues can be substituted to allow (e.g., by addition of serine, threonine, or asparagine residues, or glycosylation motifs) or prevent (e.g., by removal of serine, threonine, or asparagine residues, or glycosylation motifs) glycosylation.
  • Surface-exposed amino acid residues include, but are not limited to, threonine at position 496, serine at position 58, threonine at position 76, threonine at position 79, threonine at position 83, threonine at position 125, threonine at position 236, serine at position 270, serine at position 273, serine at position 304, serine at position 435, threonine at position 478, threonine at position 506, and threonine at position 508 (amino acid numbering is relative to e.g., the sequence of the HSA linker set forth in SEQ ID NO: 1).
  • Other surface -exposed residues can be identified by the skilled artisan using the HSA crystal structure (Sugio et al, "Crystal structure of human serum albumin at 2.5 A resolution," Protein Eng. 12:439-446 (1999)).
  • target molecule or “target cell” is meant a molecule (e.g., a protein, epitope, antigen, receptor, or ligand) or cell to which a binding moiety (e.g., an antibody), or an HSA conjugate that contains one or more binding moieties (e.g., an HSA linker bonded to one or more antibodies or antibody fragments) can specifically bind.
  • a target molecule can be present on the exterior of a target cell (e.g., a cell-surface or secreted protein) or in the interior of a target cell.
  • treating is meant the reduction (e.g., by at least 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, or even 100%) in the progression or severity of a human disease or disorder (e.g., an autoimmune or proliferative disease), or in the progression, severity, or frequency of one or more symptoms of the human disease or disorder in a human patient.
  • a human disease or disorder e.g., an autoimmune or proliferative disease
  • Figure 1 is an illustration showing the schematic representation of an exemplary HSA linker conjugate.
  • the connector between the amino terminal binding moiety and the USA linker has a sequence of alanine, alanine and serine.
  • the connector between the HSA linker and the carboxy terminal binding moiety has a sequence of alanine, alanine, alanine, leucine (SEQ ID NO:5).
  • Figure 2 is a graph showing that B2B3 variants inhibit HRG-induced pErbB3 in ZR75-1 breast cancer cells.
  • Figures 3A-D arc graphs showing the inhibition of phosphorylated ErbB3 in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 (Figure 3A), H3-HSA-B 1D2 ( Figure 3B), H3-HSA-F5B6H2 ( Figure 3C), and F4-HSA-F5B6H2 ( Figure 3D).
  • Figures 4A-D are graphs showing the inhibition of phosphorylated AKT in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 ( Figure 4A), H3-HSA-B 1D2 ( Figure 4B), H3-HSA-F5B6H2 ( Figure 4C), and F4-HSA-F5B6H2 ( Figure 4D).
  • Figures 5A-D are graphs showing that inhibition of phosphorylated ERK in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 (Figure 5A), H3-HSA-B 1D2 ( Figure 5B), H3-HSA-F5B6H2 ( Figure 5C), and F4-HSA-F5B6H2 ( Figure 5D).
  • Figure 6 is a graph showing that treatment of BT474 breast cancer cells with B2B3-1 variants causes Gl arrest and a decrease in the number of cells in S phase.
  • Figure 7 is a flow cytometry histogram showing that pre-incubation of BT-474-M3 cells with 1 ⁇ M B2B3-1 substantially blocks binding of HRG.
  • Figures 8A-D are graphs showing that B2B3-1 inhibits ErbB3 and AKT phosphorylation in B-T474-M3 and ZR75-30 cell lines.
  • Breast cancer cell lines BT-474-M3 ( Figures 8A and 8C) and ZR75-3 0 ( Figures 8B and 8D) were pre-treated with a dose titration of B2B3-1 for 24 hours and then stimulated for 10 minutes with 5 nM of HRG l ⁇ EGF domain. The phosphorylation status of ErbB3 and AKT was then examined using an ELISA assay.
  • Figure 9 is a photograph of a Western blot that shows the effect of B2B3-1 treatment on signaling proteins in BT474 breast cancer cells.
  • Figure 10 is a photograph of a Western blot that shows the immunoprecipitation of B2B3-1 treated BT474 breast cancer cells.
  • Figures 11A-C are graphs showing B2B3-1 treatment of BT-474 cell line causes Gl arrest and a decrease in the population of cells in S phase ( Figure 1 IA), and inhibits colony formation in both BT-474 and SKBr3 cells compared to untreated cells (Figure 1 IB).
  • B2B3-1 inhibits proliferation of BT-474-M3 cells in a cell impedance assay (Figure HC).
  • Figure 12 is a graph showing that B2B3-1 does not stimulate ErbB3 phosphorylation in ZR75-1 cells.
  • Figures 13A-B are graphs showing that D2B3-1 binds specifically to ErbB3 ( Figure 13A) and ErbB2 ( Figure 13B).
  • Figure 14 is a graph showing that avidity binding of B2B3-1 to MALME-3 cells results in a significant increase in apparent binding affinity compared to ErbB2-only binding variant, SKO-3, and ErbB3-only binding variant, SKO-2.
  • Figures 15A-C are graphs showing the stability of B2B3-1 in mouse, Cynomolgus monkey, and human serum. 100 nM B2B3-1 was incubated in mouse ( Figure 15A), Cynomolgus monkey ( Figure 15B), or human ( Figure 15C) serum at 37°C for a period of 120 hours. Samples were removed at 0, 24, 48, 72, 96 and 120 hours and the ability of B2B3-1 to bind both ErbB2 and ErbB3 was measured by ELISA (RLU - relative light units).
  • Figures 16 is a graph showing B2B3-1 dose response in a BT-474-M3 breast cancer xenograft model. The relationship of B2B3-1 dose on tumor response was assessed in the BT-474- M3 breast tumor line at the doses indicated. HSA was given at 52.5 mg/kg, which is an equimolar dose to the 90 mg/kg B2B3-1 dose.
  • Figures 17A-E are graphs showing that B2B3-1 is effective in multiple xenograft models in an ErbB2 dependent manner.
  • Calu-3 human lung adenocarcinoma; Figure 17 ⁇
  • SKOV-3 human ovarian adenocarcinoma; Figure 17B
  • NCI-N87 human gastric carcinoma; Figure 17C
  • ACFIN human kidney adenocarcinoma; Figure 17D
  • MD ⁇ -MB-361 human breast adenocarcinoma; Figure 17E
  • Figures 18A-B are graphs showing that the over-expression of ErbB2 converts B2B3-1 non- responder ADRr breast cancer xenograft model into a responder. ErbB2 was over-expressed in wild type ADRr xenografts ( Figure 18A) and ADRr-E2 xenografts ( Figure 18B) using a retroviral expression system.
  • Figures 19A-B are graphs showing that B2B3-1 activity correlates positively with ErbB2 expression levels in vitro ( Figure 19A) and in vivo ( Figure 19B).
  • Figure 20A-B show that B2B3-1 treatment modifies tumor cell cycling.
  • Figure 2OA includes fluorescent micrographs showing that B2B3-1 treatment of BT474-M3 breast tumor cells for 6 hours results in translocation of cell cycle inhibitor p27 k ⁇ l to the nucleus. Hoechst stain was used to identify the nucleus.
  • Figure 2OB is a Western blot of BT-474-M3 cells treated with B2B3-1 for 72 hours, which resulted in a decrease in the levels of the cell cycle regulator Cyclin Dl. The cytoskeleton protein vinculin was probed as a protein loading control in this experiment.
  • Figures 21A-B are micrographs showing that B2B3-1 treatment of BT474 breast tumor xenografts results in translocation of p27 kipl to the nucleus.
  • BT474 breast tumor xenografts were treated with B2B3-1 ( Figure 21A) at a dose of 30 mg/kg or an equimolar dose of HSA ( Figure 21B) every 3 days for a total of 4 doses and stained for p27 k ⁇ l .
  • Figure 22A-B are fluorescent micrographs showing that B2B3-1 treatment results in a reduction of the proliferation marker Ki67 in BT474-M3 breast cancer xenograft.
  • BT474-M3 breast tumor xenografts were treated with B2B3-1 (Figure 22A) at a dose of 30 mg/kg or an equimolar dose of HSA ( Figure 22B) every 3 days for a total of 4 doses.
  • Figures 23A-B are fluorescent micrographs showing that B2B3-1 treatment results in a reduction of vessel density in BT474-M3 breast cancer xenograft tumors (as determined by a reduction in CD31 staining).
  • BT474-M3 breast tumor xenografts were treated with B2B3-1 ( Figure 23A) at a dose of 30 mg/kg or an equimolar dose of HSA ( Figure 23B) every 3 days for a total of 4 doses.
  • Figures 24A-B are graphs showing that B2B3-1 inhibits phosphorylation of ErbB3 in vivo. Lysates from individual BT-474-M3 xenograft tumors treated with B2B3-1 (M1-M5) or control HSA (H1-H2) were subjected to SDS-PAGE and probed for pErbB3 and beta tubulin using Western blot analysis (Figure 24A). Normalization of the mean pErbB3 signal to the mean beta tubulin signal demonstrated that B2B3-1 treated tumors contained significantly less pErbB3 than HSA tumors ( Figure 24B).
  • Figures 25A and B are graphs showing the in vivo activity of B2B3-1 in BT-474-M3 xenografts which have reduced PTEN activity.
  • Cultured BT-474-M3 tumor cells were transfected with a control vector ( Figure 25A) or with a retroviral vector encoding shPTEN ( Figure 25B), which knocks out PTEN activity.
  • BT-474-M3 breast cancer cells engineered to knock out PTEN activity were injected into the right flank of mice, while cells transfected with control vector were injected into the left flank of the same mouse.
  • mice were treated with 30mg/kg B2B3-1 every 3 days or 10mg/kg Herceptin every week and HSA was injected as a control at an equimolar dose to B2B3-1 .
  • B2B3-1 and Herceptin promoted a reduction in the size of tumors formed by control BT-474-M3 breast cancer cells ( Figure 25A), whereas only B2B3-1 (and not Hcrceptin) promoted a reduction in the size of tumors formed by BT-474-M3 breast cancer cells lacking expression of PTEN ( Figure 25B).
  • Figures 26A-B show that B2B3-1 inhibits phosphorylation of AKT in BT-474-M3 xenografts that have reduced PTEN activity.
  • Tumors were lysed following the completion of treatment (q3dxl 1) and tested for PTEN, pErbB3, and pAKT expression levels by Western blot analysis (Figure 26A). Densitometry on the band intensity for pAKT normalized to total AKT and total protein demonstrate that B2B3-1 was able to inhibit phosphorylation of this protein, when FIerceptin did not (Figure 26B).
  • Figures 27 A-D are graphs showing the single dose pharmacokinetic properties of 5 (Figure 27A), 15 (Figure 27B), 30 (Figure 27C), and 45 (Figure 27D) mg/kg bolus dose of B2B3-1 in nu/nu mice.
  • B2B3-1 serum concentrations are comparable measured by the HSA assay or ErbB2/ErbB3 assay, indicating that the antigen binding activity of B2B3-1 is retained in circulation.
  • Figure 28 is a graph showing the dose-exposure relationship for 5, J 5, 30, and 45 mg/kg bolus doses of B2B3-1 in nude mice. Increases in dose result in a linear increase in overall exposure to B2B3-1.
  • Figure 30 is an illustration of the B2B3-1 expression plasmid pMPl 0k4H3-mIISA-B 1D2.
  • Figure 31 is an illustration of the neomycin resistance plasmid pSV2-neo.
  • Figure 32 is an illustration of the hygromycin resistance plasmid pTK-IIyg.
  • HSA human serum albumin linker
  • an agent of the invention e.g., a binding, diagnostic, or therapeutic agent
  • the invention provides a mutated HSA linker that has two defined amino acid substitutions (i.e., the "C34S” and "N503Q" substitutions, as set forth in SEQ ID NO:1).
  • the invention provides an HSA linker bonded to one or more binding moieties (e.g., antibodies, antibody fragments, receptor/ligands, or small molecules) for diagnostic or therapeutic applications in a mammal (e.g., a human) in vivo or for use in vitro in connection with mammalian cells, tissues, or organs.
  • a mammal e.g., a human
  • the HSA linker may be coupled to one or more immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents for diagnostic or therapeutic applications in a mammal (or in connection with a mammalian cell, tissue, or organ).
  • An agent of the invention which includes the HSA linker, can be optionally combined with one or more pharmaceutically acceptable carriers or excipients and can be formulated to be administered intravenously, intramuscularly, orally, by inhalation, parenterally, intraperitoneally, intraarterially, transdermally, sublingually, nasally, through use of suppositories, transbuccally, liposomally, adiposally, opthalmically, intraocularly, subcutaneously, intrathecal Iy, topically, or locally.
  • an agent of the invention which includes the HSA linker can be combined or coadministered with one or more biologically-active agents (e.g., biological or chemical agents, such as chemotherapeutics and antineoplastic agents).
  • biologically-active agents e.g., biological or chemical agents, such as chemotherapeutics and antineoplastic agents.
  • the invention provides a kit, with instructions, for the conjugation of binding moieties (e.g., antibodies, antibody fragments, receptors or ligands), immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents to the HSA linker of the invention to prepare agents of the invention that can be used for diagnostic or therapeutic applications.
  • binding moieties e.g., antibodies, antibody fragments, receptors or ligands
  • immunomodulatory agents e.g., cytotoxic or cytostatic agents, detectable labels, or radioactive agents
  • a Mutated Human Serum Albumin (HSA) Linker contains two amino acid mutations, at positions 34 and 503, relative to the wild-type HSA amino acid sequence set forth in SEQ ID NO:3.
  • the cysteine residue at position 34 i.e., C34
  • the asparagine residue at position 503 i.e., N503
  • can be mutated to any amino acid residue other than asparagine e.g., glutamine, serine, histidine, or alanine).
  • the HSA linker of the invention has the amino acid and corresponding nucleotide sequence set forth in SEQ ID NOS :1 and 2, respectively.
  • This mutated HSA linker of the invention contains two amino acid substitutions (i.e., serine for cysteine at amino acid residue 34 ("C34S”) and glutamine for asparagine at amino acid residue 503 (“N503Q”)).
  • the HSA linker when bonded to one or more binding moieties (e.g., antibodies, antibody fragments (e.g., single chain antibodies), or other targeting or biologically active agents (e.g., receptors and ligands)), confers several beneficial pharmacologic properties to those conjugates and to additional diagnostic or therapeutic agents also conjoined (e.g., immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents)) relative to the pharmacologic properties of these agents in the absence of the HSA linker of the invention.
  • binding moieties e.g., antibodies, antibody fragments (e.g., single chain antibodies), or other targeting or biologically active agents (e.g., receptors and ligands)
  • additional diagnostic or therapeutic agents also conjoined (e.g., immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents)) relative to the pharmacologic properties of these agents in the absence of the HSA linker of the invention.
  • These benefits can include decreased immunogenicity (e.g., decreased host antibody neutralization of linker-antibody conjugates), increased detection of HSA linker conjugates (e.g., by mass spectroscopy) and increased pharmacologic half-life (e.g., a half-life greater than 6 hours, 8 hours, 12 hours, 24 hours, 36 hours, 2 days, 3 days, 4 days, 5 days, 6 days, or 7 days) when administered to a mammal (e.g., a human).
  • pharmacologic half-life e.g., a half-life greater than 6 hours, 8 hours, 12 hours, 24 hours, 36 hours, 2 days, 3 days, 4 days, 5 days, 6 days, or 7 days
  • the asparagine at amino acid residue 503 is sensitive to deamination, likely resulting in reduced pharmacologic half-life.
  • the substitution of glutamine for asparagine at amino acid residue 503 can result in increased pharmacologic half-life of the HSA linker of the invention, and correspondingly, of conjugate agents that include the HSA linker when administered to a mammal (e.g., a human) or cells, tissues, or organs thereof.
  • the mutated HSA linker of the invention includes domain I of HSA
  • an HSA linker of the invention can include domains I and II, I and 111, or 11 and III.
  • cysteine residue at position 34 i.e., C34 of domain I (SEQ ID NO:53) can be mutated to any amino acid residue other than cysteine (e.g., serine, threonine, or alanine).
  • asparagine residue at position 503 i.e., N503 of domain III (SEQ ID NO:55) can be mutated to any amino acid residue other than asparagine (e.g., glutamine, serine, histidine, or alanine).
  • HSA linkers can be incorporated into an HSA linker conjugate of the invention, which includes one or more of a polypeptide connector, a binding moiety, and therapeutic or diagnostic agents, each of which is described in detail below.
  • short (e.g., 2-20 amino acids in length) polypeptide connectors that can be bonded (e.g, covalently (e.g., a peptidic bond), ionically, or hydrophobically bonded, or via a high-affinity protein-protein binding interaction (e.g., biotin and avidin)) to the amino or carboxy termini of an HSA linker.
  • These connectors provide flexible tethers to which any of the binding moieties described herein can be attached.
  • a polypeptide connector may be 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more amino acids in length.
  • the connector is a sequence of, e.g., glycine, alanine, serine, glutamine, leucine, or valine residues.
  • the connector of the invention can be solely glycine, alanine, serine, glutamine, leucine, or valine residues, or it may be any combination of these residues up to about 20 amino acids in length.
  • the connector attached to the amino terminus of an HSA linker has the amino acid sequence "AAS" or "AAQ” and the connector attached to the carboxy terminus has the amino acid sequence "AAAL" (SEQ ID NO:5).
  • the connector can be covalently bound to the amino or carboxy terminal residue of the HSA linker, to an amino acid residue within the HSA linker, or can be included between one or more binding moieties, if present.
  • HSA Linker Manufacture The HSA linker of the invention, which may optionally include the peptide connectors described above, one or more of the binding moieties described below, polypeptide-based detectable labels, and other polypeptide-based therapeutic agents, can be produced recombinantly.
  • a nucleotide sequence encoding the HSA linker (and one or more of the optional elements) may be expressed (e.g., in a plasmid, viral vector, or transgenically) in a bacterial (e.g., E.
  • HSA linker e.g., coli
  • insect yeast
  • mammalian cell e.g., a CHO cell
  • mammalian tissue organ, or organism
  • a transgenic rodent e.g., a goat
  • non-human primate e.g., a transgenic rodent, ungulate (e.g., a goat), or non-human primate.
  • the HSA linker of the invention which may include one or more of the optional elements described above, can be synthetically produced.
  • the HSA linker can be prepared by techniques generally established in the art of peptide synthesis, such as the solid-phase approach. Solid-phase synthesis involves the stepwise addition of amino acid residues to a growing peptide chain that is linked to an insoluble support or matrix, such as polystyrene. The C-terminus residue of the peptide is first anchored to a commercially available support with its amino group protected with an N-protecting agent such as a t-butyloxycarbonyl group (tBoc) or a fluorenylmethoxycarbonyl (FMOC) group.
  • tBoc t-butyloxycarbonyl group
  • FMOC fluorenylmethoxycarbonyl
  • the amino-protecting group is removed with suitable deprotecting agents such as TFA in the case of tBOC or piperidine for FMOC and the next amino acid residue (in N-protected form) is added with a coupling agent such as dicyclocarbodiimide (DCC).
  • a coupling agent such as dicyclocarbodiimide (DCC).
  • DCC dicyclocarbodiimide
  • the agent is cleaved from the support with a suitable reagent, such as trifluoroacetic acid (TFA) or hydrogen fluoride (HF).
  • TFA trifluoroacetic acid
  • HF hydrogen fluoride
  • the HSA linker which may include one or more of the optional elements described above, can be manufactured in one, two, three, or more segments, which can then be ligated to form the whole HSA linker construct.
  • the HSA linker of the invention can also be prepared as a construct that includes one or more binding moieties, such as antibodies, antibody fragments (as defined herein, e.g., a single chain Fv (scFv)) or receptor/ligands (i.e., protein or glycoprotein ligands or receptors) that allow selective and specific binding of the HSA linker construct to a target cell, tissue, or organ.
  • the binding moieties can be bonded to the HSA linker (e.g., via a covalent (e.g., a peptide bond), ionic, or hydrophobic bond, or via a high-affinity protein-protein binding interaction (e.g., biotin and avidin)).
  • an HSA linker of the invention that includes one or more polypeptide connectors or binding moieties can be recombinantly or synthetically produced.
  • One or more binding moieties can be bonded to an HSA linker of the invention.
  • two or more identical binding moieties i.e., moieties having the same structure and binding affinities
  • two or more different binding moieties e.g., an antibody, such as a scFv, with binding affinities for two or more different target molecules, or scFv with binding affinities for two or more different epitopes on the same target molecule
  • an USA linker e.g., a bispecific HSA linker conjugate
  • different species of binding moieties can also be bonded to an HSA linker to bestow, for example, two or more different binding specificities or agonistic/antagonistic biological properties on the linker conjugate.
  • binding moiety pairs for use in the preparation of bispecific HSA linker conjugates are disclosed in, e.g., International Patent Application Publications WO 2006/091209 and WO 2005/117973, herein incorporated by reference.
  • more than two binding moieties e.g., the same or different binding moieties
  • the invention features an agent having at least first and second binding moieties, each of which can be bound at either the amino or carboxy terminus of the HSA linker protein, or to polypeptide connectors, as defined herein, present at either or both termini.
  • Figure 1 illustrates an exemplary mutated HSA linker of the invention in which two binding moieties ("arm 1" and "arm 2") are bonded to the mutated HSA linker by the amino terminal polypeptide connector AAS and carboxy terminal polypeptide connector AAAL (SEQ ID NO:5).
  • Binding moieties e.g., an antibody or scFv
  • can also be bound to other loci e.g., internal amino acid residues of the HSA linker, for example, covalently or ionically, e.g., using biotin-avidin interactions.
  • Biotinylation of amine (e.g., lysine residues) and sulfhydryl (e.g., cysteine residues) amino acid side chains is known in the art and can be used to attach binding moieties to the HSA linker.
  • Binding moieties that can be included in an HSA linker conjugate of the invention include antibodies, antibody fragments, receptors, and ligands. Binding moieties bound to an HSA linker of the invention may be recombinant (e.g., human, murine, chimeric, or humanized), synthetic, or natural.
  • the invention features complete antibodies, domain antibodies, diabodies, bi-specific antibodies, antibody fragments, Fab fragments, F(ab')2 molecules, single chain Fv (scFv) molecules, tandem scFv molecules, antibody fusion proteins, and aptamers.
  • Antibodies of the invention include the IgG, IgA, IgM, IgD, and IgE isotypes.
  • Antibodies or antibody fragments of the invention, as used herein, contain one or more complementarity determining regions (CDR) or binding peptides that bind to target proteins, glycoproteins, or epitopes present on the exterior or in the interior of target cells.
  • CDR complementarity determining regions
  • the HSA linker of the invention can also be bonded to one or more fragments of an antibody that retain the ability to bind with specificity to a target antigen.
  • Antibody fragments include separate variable heavy chains, variable light chains, Fab, Fab', F(ab') 2 , Fabc, and scFv. Fragments can be produced by enzymatic or chemical separation of intact immunoglobulins. For example, a F(ab') 2 fragment can be obtained from an IgG molecule by proteolytic digestion with pepsin at pH 3.0-3.5 using standard methods such as those described in Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Pubs., N. Y. (1988).
  • Fab fragments may be obtained from F(ab') 2 fragments by limited reduction, or from whole antibody by digestion with papain in the presence of reducing agents. Fragments can also be produced by recombinant DNA techniques. Segments of nucleic acids encoding selected fragments are produced by digestion of full-length coding sequences with restriction enzymes, or by de novo synthesis. Often fragments are expressed in the form of phage-coat fusion proteins. This manner of expression is advantageous for affinity- sharpening of antibodies.
  • the invention further provides for humanized antibodies in combination with the HSA linker of the invention, in which one or more of the antibody CDRs arc derived from a non-human antibody sequence, and one or more, but preferably all, of the CDRs bind specifically to an antigen (e.g., a protein, glycoprotein, or other suitable epitope).
  • a humanized antibody contains constant framework regions derived substantially from a human antibody (termed an acceptor antibody), as well as, in some instances, a majority of the variable region derived from a human antibody.
  • One or more of the CDRs are provided from a non- human antibody, such as a mouse antibody.
  • the constant region(s) of the antibody may or may not be present.
  • the substitution of one or more mouse CDRs into a human variable domain framework is most likely to result in retention of their correct spatial orientation if the human variable domain framework adopts the same or a similar conformation as the mouse variable framework from which the CDRs originated. This is achieved by obtaining the human variable domains from human antibodies whose framework sequences exhibit a high degree of sequence and structural identity with the murine variable framework domains from which the CDRs were derived.
  • the heavy and light chain variable framework regions can be derived from the same or different human antibody sequences.
  • the human antibody sequences can be the sequences of naturally occurring human antibodies, consensus sequences of several human antibodies, or can be human germline variable domain sequences. See, e.g., Kettleborough et at, Protein Engineering 4:113 (1991); Kolbinger et al, Protein Engineering 6:971 (1993).
  • Suitable human antibody sequences are identified by alignments of the amino acid sequences of the mouse variable regions with the sequences of known human antibodies. The comparison is performed separately for heavy and light chains but the principles are similar for each. Methods of preparing chimeric and humanized antibodies and antibody fragments are described in, e.g., U.S. Patent Nos. 4,816,567, 5,530,101, 5,622,701, 5,800,815, 5,874,540, 5,914,1 10, 5,928,904, 6,210,670, 6,677,436, and 7,067,313 and U.S. Patent Application Nos. 2002/0031508, 2004/0265311 , and 2005/0226876. Preparation of antibody or fragments thereof is further described in, e.g., U.S. Patent Nos. 6,331,415, 6,818,216, and 7,067,313.
  • the invention provides for protein or glycoprotein receptors or ligands bound to an HSA linker of the invention.
  • HSA linkers bonded with a receptor or ligand can be used, for example, to specifically target a secreted protein, a cell (e.g., a cancer cell), tissue, or organ.
  • the specific binding of the HSA linker-receptor or ligand conjugate to cognate target receptors or ligands can cause agonistic or antagonistic biological activity in intracellular or intercellular signaling pathways.
  • receptors and ligands, or fragments thereof can be conjoined to the amino and/or carboxy termini of an HSA linker of the invention, or to an amino acid residue within the HSA linker.
  • Exemplary receptors and ligands that can be joined to an HSA linker of the invention include, but are not limited to, insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF- ⁇ ), TNF- ⁇ , folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, ⁇ 4
  • Receptors and ligands can be expressed, isolated, or joined to an HSA linker of the invention using any of the methods described supra relating to antibodies or antibody fragments.
  • HSA linker of the invention can be coupled to a chelating agent or to a detectable label to form a diagnostic agent of the invention.
  • HSA linker conjugates that include a detectable label, as described herein, as well as one or more of the therapeutic agents or binding moieties described herein.
  • the HSA linker and chelator components can be coupled to form a conjugate by reacting the free amino group of a threonine residue of the USA linker with an appropriate functional group of the chelator, such as a carboxyl group or activated ester.
  • a conjugate may be formed by incorporating the chelator ethylenediaminetetraacetic acid (EDTA), which is common in the art of coordination chemistry, when functional ized with a carboxyl substituent on the ethylene chain. Synthesis of EDTA derivatives of this type are reported in Arya et al.
  • An HSA linker or an HSA linker conjugate may incorporate a metal chelator component that is peptidic, i.e., compatible with solid-phase peptide synthesis.
  • the chelator may be coupled to the HSA linker of the invention in the same manner as EDTA described above or, more conveniently, the chelator and HSA linker or HSA linker conjugate of the invention are synthesized in ⁇ oto starting from the C-terminal residue of the HSA linker or HSA linker conjugate and ending with the N-terminal residue of the chelator.
  • An HSA linker or an HSA linker conjugate may further incorporate a linking group component that serves to couple the HSA linker of the invention to the chelator while not adversely affecting the biological properties of the HSA linker, the targeting function of the binding moiety portion(s) of the HSA linker conjugate, or the metal binding function of the chelator.
  • Suitable linking groups include amino acid chains and alkyl chains functional ized with reactive groups for coupling to the HSA linker or the HSA linker conjugate and to the chelator.
  • An amino acid chain is the preferred linking group when the chelator is peptidic so that the HSA linker or HSA linker conjugate can be synthesized in toto by solid-phase techniques.
  • An alkyl chain-linking group may be incorporated in the HSA linker or HSA linker conjugate by reacting the amino group of a threonine residue of a peptide portion of an HSA linker of the invention with a first functional group on the alkyl chain, such as a carboxyl group or an activated ester. Subsequently the chelator is attached to the alkyl chain to complete the formation of the HSA linker or HSA linker conjugate by reacting a second functional group on the alkyl chain with an appropriate group on the chelator.
  • a first functional group on the alkyl chain such as a carboxyl group or an activated ester.
  • the second functional group on the alkyl chain is selected from substituents that are reactive with a functional group on the chelator while not being reactive with a threonine residue of the mutated HSA linker protein.
  • the second functional group of the alkyl chain-linking group can be an amino group.
  • linking group to an alkyl chain is polyethylene glycol (PEG), which is functionalized in the same manner as the alkyl chain described above for incorporation in the HSA linker or HSA linker conjugate. It will be appreciated that linking groups may alternatively be coupled first to the chelator and then to the HSA linker or HSA linker conjugate of the invention.
  • PEG polyethylene glycol
  • HSA linker-chelator conjugates of the invention incorporate a diagnostically useful metal capable of forming a complex.
  • Suitable metals include, e.g., radionuclides, such as technetium and rhenium in their various forms (e.g., ""'TcO 3+ , " m TcO 2 H , ReO 3+ , and ReO 2 + ).
  • Incorporation of the metal within the HSA linker or HSA linker conjugate can be achieved by various methods common in the art of coordination chemistry. When the metal is technetium-99 m, the following general procedure may be used to form a technetium complex.
  • HSA linker-chelator conjugate solution is formed initially by dissolving the HSA linker or HSA linker conjugate in aqueous alcohol such as cthanol. The solution is then degassed to remove oxygen then thiol protecting groups are removed with a suitable reagent, for example, with sodium hydroxide, and then neutralized with an organic acid, such as acetic acid (pTI 6.0-6.5).
  • a suitable reagent for example, with sodium hydroxide
  • an organic acid such as acetic acid (pTI 6.0-6.5).
  • a stoichiometric excess of sodium pertechnetate, obtained from a molybdenum generator is added to a solution of the conjugate with an amount of a reducing agent such as stannous chloride sufficient to reduce technetium and heated.
  • a reducing agent such as stannous chloride
  • labeling of an USA linker of the invention can be accomplished by a transchelation reaction.
  • the technetium source is a solution of technetium complexed with labile ligands facilitating ligand exchange with the selected chelator.
  • Suitable ligands for transchelation include tartarate, citrate, and heptagluconate.
  • the preferred reducing reagent is sodium dithionite.
  • HSA linker or HSA linker conjugate may be labeled using the techniques described above, or alternatively the chelator itself may be labeled and subsequently coupled to an HSA linker protein of the invention to form an HSA linker-chelator conjugate; a process referred to as the "prelabeled ligand" method.
  • Another approach for labeling an HSA linker of the invention, or any agent conjugated thereto involves immobilizing the HSA linker-chelator conjugate on a solid-phase support through a linkage that is cleaved upon metal chelation. This is achieved when the chelator is coupled to a functional group of the support by one of the complexing atoms.
  • a complexing sulfur atom is coupled to the support which is functional ized with a sulfur protecting group such as maleimide.
  • HSA linker-chelator conjugate can be used to detect tissue at risk of developing cancer (e.g., lung cancer, breast cancer, colon cancer, and prostate cancer), age-related diseases (e.g., cardiovascular disease, cerebrovascular disease, or Alzheimer's disease), tobacco-related diseases (e.g., emphysema, aortic aneurysms, esophageal cancer, or squamous cell cancer of the head and neck) by procedures established in the art of diagnostic imaging.
  • cancer e.g., lung cancer, breast cancer, colon cancer, and prostate cancer
  • age-related diseases e.g., cardiovascular disease, cerebrovascular disease, or Alzheimer's disease
  • tobacco-related diseases e.g., emphysema, aortic aneurysms, esophageal cancer, or squamous cell cancer of the head and neck
  • An agent of the invention that incorporates an HSA linker labeled with a radionuclide metal, such as technetium-99 m, may be administered to a mammal (e.g., a human) by intravenous injection in a pharmaceutically acceptable solution, such as isotonic saline, or by other methods described herein.
  • a pharmaceutically acceptable solution such as isotonic saline, or by other methods described herein.
  • the amount of a labeled agent of the invention appropriate for administration is dependent upon the distribution profile of the chosen HSA linker or HSA linker conjugate in the sense that an agent of the invention that incorporates a rapidly cleared HSA linker or HSA linker conjugate may be administered at higher doses than an agent that incorporates an HSA linker or HSA linker conjugate that clears less rapidly.
  • Unit doses acceptable for imaging tissues are in the range of about 5-40 mCi for a 70 kg individual.
  • the in vivo distribution and localization of an agent of the invention that incorporates a labeled HSA linker or HSA linker conjugate can be tracked by standard techniques described herein at an appropriate time subsequent to administration, typically between 30 minutes and 180 minutes and up to about 5 days depending upon the rate of accumulation at the target site with respect to the rate of clearance at non- target tissue.
  • HSA linker of the invention can also be modified or labeled to facilitate diagnostic or therapeutic uses.
  • Detectable labels such as a radioactive, fluorescent, heavy metal, or other molecules may be bound to any of the agents of the invention.
  • Single, dual, or multiple labeling of an agent may be advantageous. For example, dual labeling with radioactive iodination of one or more residues combined with the additional coupling of, for example, 90 Y via a chelating group to amine-containing side or reactive groups, would allow combination labeling. This may be useful for specialized diagnostic needs such as identification of widely dispersed small neoplastic cell masses.
  • HSA linker of the invention can also be modified, for example, by halogenation of the tyrosine residues of the peptide component.
  • Halogens include fluorine, chlorine, bromine, iodine, and astatine.
  • Such halogenated agents may be detectably labeled, e.g., if the halogen is a radioisotope, such as, for example, 18 F, 75 Br, 77 Br, 122 1, 123 I, 124 1, 125 I, 129 I, 131 I, or 211 At.
  • Halogenated agents of the invention contain a halogen covalently bound to at least one amino acid, and preferably to D-Tyr residues in each agent molecule.
  • Radioisotopes for radiolabeling an HSA linker of the invention, or any molecule or moiety conjugated thereto include any radioisotope that can be covalently bound to a residue of the peptide component of the agent of the invention or analog thereof.
  • the radioisotopes can also be selected from radioisotopes that emit either beta or gamma radiation, or alternatively, any of the agents of the invention can be modified to contain chelating groups that, for example, can be covalently bonded to lysine residue(s) of the HSA linker or any peptidic agent conjugated thereto.
  • the chelating groups can then be modified to contain any of a variety of radioisotopes, such as gallium, indium, technetium, ytterbium, rhenium, or thallium (e.g., 125 1, 67 Ga, 11 1 In, "mTc, 169 Yb, 186 Re).
  • an HSA linker of the invention can be modified by attachment of a radioisotope.
  • a radioisotope Preferable radioisotopes are those having a radioactive half-life corresponding to, or longer than, the biological half-life of the HSA conjugate used. More preferably, the radioisotope is a radioisotope of a halogen atom (e.g. a radioisotope of fluorine, chlorine, bromine, iodine, and astatine), even more preferably 75 Br, 77 Br, 76 Br, 122 1, 123 I, 124 I, 125 I, 129 I, 131 I 5 Or 21 1 At.
  • a halogen atom e.g. a radioisotope of fluorine, chlorine, bromine, iodine, and astatine
  • radioactive metals can be coupled to radioactive metals and used in radiographic imaging or radiotherapy.
  • Preferred radioisotopes also include " 111 Tc, 51 Cr, 67 Ga, 68 Ga, 11 1 In, 168 Yb, 140 La, 90 Y, 88 Y, 153 Sm, 156 Ho, 165 Dy, 64 Cu, 97 Ru, 103 Ru, 186 Re, 188 Re, 203 Pb, 21 1 Bi, 212 Bi, 213 Bi, and 214 Bi.
  • the choice of metal is determined based on the desired therapeutic or diagnostic application.
  • An HSA linker of the invention can be coupled to a metal component, to produce agent of the invention that can be used as a diagnostic or therapeutic agent.
  • a detectable label may be a metal ion from heavy elements or rare earth ions, such as Gd + , Fe + , Mn + , or Cr + .
  • An agent of the invention that incorporates an HSA linker having paramagnetic or superparamagnetic metals conjoined thereto are useful as diagnostic agents in MRI imaging applications.
  • Paramagnetic metals that can be coupled to the agents of the invention include, but are not limited to, chromium (III), manganese (II), iron (II), iron (III), cobalt (II), nickel (II), copper (II), praseodymium (III), neodymium (III), samarium (III), gadolinium (III), terbium (III), dysprosium (III), holmium (III), erbium (III), and ytterbium (III).
  • Chelating groups may be used to indirectly couple detectable labels or other molecules to an HSA linker of the invention or to an agent conjugated thereto.
  • Chelating groups can link agents of the invention with radiolabels, such as a bifunctional stable chelator, or can be linked to one or more terminal or internal amino acid reactive groups.
  • An HSA linker of the invention, or any molecule or moeity conjugated thereto, can be linked via an isothiocyanate ⁇ -Ala or appropriate non- ⁇ -amino acid linker which prevents Edman degradation.
  • chelators known in the art include, for example, the ininocarboxylic and polyaminopolycarboxylic reactive groups, ininocarboxylic and polyaminopolycarboxylic reactive groups, diethylenetriaminepentaacetic acid (DTPA), and 1,4,7,10- tetraazacyclododecane-l ,4,7,10-tetraacetic acid (DOTA).
  • DTPA diethylenetriaminepentaacetic acid
  • DOTA 1,4,7,10- tetraazacyclododecane-l ,4,7,10-tetraacetic acid
  • An HSA linker of the invention when expressed recombinantly, can be joined to a peptidic detectable label or diagnostic agent.
  • Peptides and proteins that can be used as a detectable label with an USA linker include, but are not limited to, fluorescent proteins, bioluminescent proteins, and epitope tags, each of which is discussed in detail below.
  • One or more of these detectable labels can also be incorporated into an HSA linker of the invention that also includes a therapeutic, cytotoxic, or cytostatic agent.
  • Fluorescent proteins or fluorochromes such as green fluorescent protein (GFP; SEQ ID NO:47), enhanced GFP (eGFP), yellow fluorescent protein (SEQ ID NO: 48; YFP), cyan fluorescent protein (SEQ ID NO: 49; CFP), and red fluorescent protein (SEQ ID NO: 50; RFP or DsRed), can be used as detectable label joined to an HSA linker of the invention.
  • Fluorescent proteins can be recombinantly expressed in a cell (e.g., a blood cell, such as a lymphocyte) following transfection or transduction of the cell with an expression vector that encodes the nucleotide sequence of the fluorescent protein.
  • the fluorescent protein Upon exposure of the fluorescent protein to a stimulating frequency of light, the fluorescent protein will emit light at a low, medium, or high intensity that can be observed by eye under a microscope or by an optical imaging device.
  • Exemplary fluorescent proteins suitable for use as the diagnostic sequence in agents of the invention are described in, e.g., U.S. Patent Nos. 7,417,131 and 7,413,874, each of which is herein incorporated by reference.
  • Bioluminescent proteins can also be used as a detectable label incorporated into an HSA linker of the invention.
  • Bioluminescent proteins such as Iuciferase (e.g., firefly (SEQ ID NO:51), Renilla (SEQ ID NO:52), and Omphalotus Iuciferase) and aequorin, emit light as part of a chemical reaction with a substrate (e.g., luciferin and coelenterazine).
  • Iuciferase e.g., firefly (SEQ ID NO:51), Renilla (SEQ ID NO:52), and Omphalotus Iuciferase
  • aequorin emit light as part of a chemical reaction with a substrate (e.g., luciferin and coelenterazine).
  • a vector encoding a Iuciferase gene provides for the in vivo, in vitro, or ex vivo detection of cells (e.g., blood cells, such as lymphocytes) that have been transduced or transfected according to the methods of the invention.
  • cells e.g., blood cells, such as lymphocytes
  • bioluminescent proteins suitable for use as diagnostic sequence of the invention and methods for their use are described in, e.g., U.S. Patent Nos. 5,292,658, 5,670,356, 6,171,809, and 7,183,092, each of which is herein incorporated by reference.
  • Epitope tags are short amino acid sequences, e.g., 5-20 amino acid residues in length, that can be incorporated into an HS ⁇ linker of the invention as a detectable label to facilitate detection once expressed in a cell, secreted from the cell, or bound to a target cell.
  • An agent of the invention that incorporates an epitope tag as a diagnostic sequence can be detected by virtue of its interaction with an antibody, antibody fragment, or other binding molecule specific for the epitope tag.
  • Nucleotide sequences encoding the epitope tag are produced either by cloning appropriate portions of natural genes or by synthesizing a polynucleotide that encodes the epitope tag.
  • An antibody, antibody fragment, or other binding molecule that binds an epitope tag can directly incorporate a detectable label (e.g., a fluorochrome, radiolabel, heavy metal, or enzyme such as horseradish peroxidase) or serve itself as a target for a secondary antibody, antibody fragment, or other binding molecule that incorporates such a label.
  • a detectable label e.g., a fluorochrome, radiolabel, heavy metal, or enzyme such as horseradish peroxidase
  • Exemplary epitope tags that can be used as a diagnostic sequence include c-myc (SEQ ID NO:33), hemagglutinin (HA; SEQ ID NO:34), and histidine tag (His 6 ; SEQ ID NO:35).
  • fluorescent (e.g., GFP) and bioluminescent proteins can also serve as epitope tags, as antibodies, antibody fragments, and other binding molecules are commercially available for the detection of these proteins.
  • an HSA linker of the invention that incorporates a diagnostic sequence (e.g., a fluorescent protein, bioluminescent protein, or epitope tag) or any cell expressing or bound thereto can be accomplished using a microscope, flow cytometer, luminometer, or other state of the art optical imaging device, such as an IVIS ® Imaging System (Caliper LifeSciences, Hopkinton, MA).
  • a diagnostic sequence e.g., a fluorescent protein, bioluminescent protein, or epitope tag
  • any cell expressing or bound thereto can be accomplished using a microscope, flow cytometer, luminometer, or other state of the art optical imaging device, such as an IVIS ® Imaging System (Caliper LifeSciences, Hopkinton, MA).
  • HSA linker protein of the invention can be coupled to any known cytotoxic or therapeutic moiety to form an agent of the invention that can be administered to treat, inhibit, reduce, or ameliorate disease (e.g., a cancer, autoimmune disease, or cardiovascular disease) or one or more symptoms of disease.
  • diseases e.g., a cancer, autoimmune disease, or cardiovascular disease
  • antineoplastic agents such as: Acivicin; Aclarubicin; Acodazole Hydrochloride; Acronine; Adozelesin; Adriamycin; Aldesleukin; Altretamine; Ambomycin; A. metantrone Acetate;
  • Mitotane Mitoxantrone Hydrochloride
  • Mycophenolic Acid Nocodazole; Nogalamycin;Ormaplatin;
  • Tiazofurin Tirapazamine; Tomudex; TOP53; Topotecan Hydrochloride; Toremifene Citrate;
  • Tubulozole Hydrochloride Uracil Mustard; Uredepa; Vapreotide; Verteporfin; Vinblastine;
  • Vinblastine Sulfate Vincristine; Vincristine Sulfate; Vindesine; Vindesine Sulfate; Vinepidine Sulfate; Vinglycinate Sulfate; Vinleursine Sulfate; Vinorelbine Tartrate; Vinrosidine Sulfate;
  • Nnitrosourea MNU
  • N, N'-Bis (2-chloroethyl)-N-nitrosourea BCNU
  • N- (2-chloroethyl)-N' cyclohexyl-N-nitrosourea CCNU
  • MeCCNU N- (2-chloroethyl)-N'- (diethyl) ethylphosphonate-N-nitrosourea (fotemustine); streptozotocin; diacarbazine (DTIC); mitozolomidc; tcmozolomide; thiotepa; mitomycin C; AZQ; adozelesin; Cisplatin; Carboplatin; Ormaplatin; Oxaliplatin;C 1 -973; DWA 21 14R; JM216; JM335;
  • ALL-TK antagonists altretamine; ambamustine; amidox; amifostine; aminolevulinic acid; amrubicin; amsacrine; anagrelide; anastrozole; andrographolide; angiogenesis inhibitors; antagonist D; antagonist G; antarelix; anti-dorsalizing morphogenetic protein- 1; antiandrogen, prostatic carcinoma; antiestrogen; antineoplaston; antisense oligonucleotides; aphidicolin glycinate; apoptosis gene modulators; apoptosis regulators; apurinic acid; ara-CDP-DL-PTBA; argininedeaminase; asulacrine; atamestane; atrimustine; axinastatin 1; axinastatin 2; axinastatin 3; azasetron; azatoxin; azatyrosine; baccatin III derivatives; balanol
  • the HSA linker agents of the invention can also include site-specifically conjugated molecules and moieties.
  • Site-specific conjugation allows for the controlled stoichiometric attachment to specific residues in the HSA linker of cytotoxic, immunomodulatory, or cytostatic agents including, e.g., anti tubulin agents, DNA minor groove binders, DNA replication inhibitors, alkylating agents, anthracyclines, antibiotics, antifolates, antimetabolites, chemotherapy or radiation sensitizer, duocarmycins, etoposides, fluorinated pyrimidines, ionophores, lexitropsins, nitrosoureas, platinols, purine antimetabolites, puromycins, steroids, taxanes, topoisomerase inhibitors, and vinca alkaloids or any other molecules or moieties described herein.
  • An HSA linker of the invention can also be coupled to a lytic peptide to form an agent of the invention.
  • lytic peptides induce cell death and include, but are not limiled to, streptolysin O; stoichactis toxin; phallolysin; staphylococcus alpha toxin; holothurin A; digitonin; melittin; lysolecithin; cardiotoxin; and cerebratulus A toxin (Kem et al, J. Biol. Chem. 253(16):5752-5757, 1978).
  • An agent of the invention can also be formed by conjugating an HSA linker of the invention, or any molecule or moiety conjugated thereto (e.g., antibody or antibody fragment conjugates), to a synthetic peptide that shares some sequence homology or chemical characteristics with any of the naturally occurring peptide lysins; such characteristics include, but are not limited to, linearity, positive charge, amphipathicity, and formation of alpha-helical structures in a hydrophobic environment (Leuschner et al, Biology of Reproduction 73:860-865, 2005).
  • An HSA linker of the invention, or any molecule or moiety conjugated thereto can also be coupled to an agent that induces complement-mediated cell lysis such as, for example, the immunoglobulin F c subunit.
  • An HSA linker of the invention can also coupled to any member of the phospholipase family of enzymes (including phospholipase A, phospholipase B, phospholipase C, or phospholipase D) or to a catalytically-active subunit thereof.
  • An HSA linker of the invention, or any molecule or moiety conjugated thereto can also be coupled to a radioactive agent to form an agent that can be used for detection or therapeutic applications.
  • Radioactive agents that can be used include but are not limited to Fibrinogen 125 I; Fludeoxyglucose 18 F; Fluorodopa 18 F; Insulin 125 I; Insulin 131 I; lobenguane 123 I; Iodipamide Sodium 131 I; Iodoantipyrine 131 I; Iodocholesterol 131 I ; lodohippurate Sodium 123 I; Iodohippurate Sodium 125 I; Iodohippurate Sodium 131 I; Iodopyracct 125 I; Iodopyracet 131 I; lofetamine Hydrochloride 123 I; Iomethin 125 I; Iomethin 131 I; lothalamate Sodium 125 I; Iothalamate Sodium 131 I; tyrosine 131 I; Liothyronine 125 I; Liothyronine 131 I; Merisoprol Acetate 197 Hg; Merisoprol Acetate 203
  • a radioisotope could be site-specifically conjoined to an HSA linker or HSA linker conjugate.
  • the available reactive groups could be used to conjugate site-specific bifunctional chelating agents for labeling of radioisotopes, including 123 1, 124 I, 125 I, ' 31 1, 99m Tc, 11 1 In, 64 Cu, 67 Cu, 186 Re, 188 Re, 177 Lu, 90 Y, 77 As, 72 As, 86 Y, 89 Zr, 21 1 At, 212 Bi, 213 Bi, or 225 Ac.
  • Therapeutic or cytotoxic agents incorporated into or coupled with an HSA linker or an HSA linker conjugate may further include, for example, anti-cancer Supplementary Potentiating Agents, including, but not limited to: tricyclic anti -depressant drugs (e.g., imipramine, desipramine, amitryptyline, clomipramine, trimipramine, doxepin, nortriptyline, protriptyline, amoxapine, and maprotiline); non-tricyclic anti-depressant drugs (e.g., sertraline, trazodone, and citalopram); Ca 21 antagonists (e.g., verapamil, nifedipine, nitrendipine, and caroverine); Calmodulin inhibitors (e.g., prenylamine, trifluoroperazine, and clomipramine); Amphotericin B; Triparanol analogs (e.g., tamoxifen); anti
  • An agent of the invention that includes an HSA linker, or any molecule or moiety conjugated thereto, can also be coupled to or administered with cytokines (e.g., granulocyte colony stimulating factor, interferon-alpha, and tumor necrosis factor-alpha).
  • cytokines e.g., granulocyte colony stimulating factor, interferon-alpha, and tumor necrosis factor-alpha.
  • An LISA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to an antimetabolic agent.
  • Antimetabolic agents include, but are not limited to, the following compounds and their derivatives: azathioprine, cladribine, cytarabine, dacarbazine, fludarabine phosphate, fluorouracil, gencitabine chlorhydrate, mercaptopurine, methotrexate, mitobronitol, mitotane, proguanil chlorohydrate, pyrimethamine, raltitrexed, trimetrexate glucuronate, urethane, vinblastine sulfate, vincristine sulfate, etc.
  • an HSA linker or conjugate of the invention can be coupled to a folic acid-type antimetabolite, a class of agents that includes, for example, methotrexate, proguanil chlorhydrate, pyrimethanime, trimethoprime, or trimetrexate glucuronate, or derivatives of these compounds.
  • An HSA linker of the invention can also be coupled to a member of the anthracycline family of neoplastic agents, including but not limited to aclarubicine chlorhydrate, daunorubicine chlorhydrate, doxorubicine chlorhydrate, epirubicine chlorhydrate, idarubicine chlorhydrate, pirarubicine, or zorubicine chlorhydrate; a camptothecin, or its derivatives or related compounds, such as 10, 1 1 methylenedioxycamptothecin; or a member of the maytansinoid family of compounds, which includes a variety of structurally-related compounds, e.g., ansamitocin P3, maytansine, 2'-N-demethylmaytanbutine, and maytanbicyclinol.
  • aclarubicine chlorhydrate daunorubicine chlorhydrate, doxorubicine chlorhydrate, epirubicine chlorhydrate, idarubicine chlorhydrate, pirarubicine, or zorubicine chlorhydrate
  • HSA linker of the invention can also be coupled directly to a cytotoxic or therapeutic agent using known chemical methods, or coupled indirectly to a cytotoxic or therapeutic agent via an indirect linkage.
  • an HSA linker can be attached to a chelating group that is attached to the cytotoxic or therapeutic agent.
  • Chelating groups include, but are not limited to, ininocarboxylic and polyaminopolycarboxylic reactive groups, diethylenetriaminepentaacetic acid (DTPA), and l,4,7,10-tetraazacyclododecane-l ,4,7,10-tetraacetic acid (DOTA).
  • An agent of the invention that includes, e.g., an HSA linker, one or more binding moieties (with or without intervening polypeptide connectors, as defined herein), and a therapeutic or cytotoxic agent, can be specifically targeted by the binding moiety (e.g., antibody, antibody fragment, or receptor/ligand) to a cell or tissue, thereby allowing selective destruction of the target cell or tissue to which the binding moiety is directed.
  • the binding moiety e.g., antibody, antibody fragment, or receptor/ligand
  • an agent of the invention can be used to target and destroy cancer cells of the lung, breast, prostate, and colon in order to prevent, stabilize, inhibit the progression of, or treat cancers originating in these organs when the agent includes a binding moiety that specifically binds to the cancer cells in these organs.
  • the agents of the invention can be used to target and destroy cells of the vasculature, brain, liver, kidney, heart, lung, prostate, colon, nasopharynx, oropharynx, larynx, bronchus, and skin in order to prevent, stabilize, inhibit the progression of, or treat age-related, tobacco-related, or autoimmune diseases or conditions relating to these organs by targeting, in the case of autoimmune disease for example, autoreactive T cells (e.g., by binding to and agonizing tumor necrosis factor receptor 2 (TNFR2) present on the autoreactive T cells).
  • TNFR2 tumor necrosis factor receptor 2
  • An HSA linker of the invention when expressed recombinantly, can be joined to a cytotoxic polypeptide.
  • Cytotoxic polypeptides when brought into contact with a target cell (e.g., a cancer cell), exerts cytotoxic or cytostatic effects on the cell.
  • a cytotoxic polypeptide when joined with an HSA linker of the invention, can induce events in a target cell upon binding of the target cell that leads to cell death through, for example, apoptosis, necrosis, or senescence.
  • a cytotoxic polypeptide joined with an HSA linker of the invention can interfere or inhibit normal cellular biological activities, such as division, metabolism, and growth, or abnormal cellular biological activities, such as metastasis.
  • an HSA linker of the invention joined to caspase 3 will bind a target cell (e.g., a cancer cell) and undergoe endocytosis. Once internalized by the target cell, the caspase portion of the FISA linker conjugate can initiate the pro-apoptotic caspase cascade, ultimately resulting in the apoptosis of the target cell.
  • a target cell e.g., a cancer cell
  • the caspase portion of the FISA linker conjugate can initiate the pro-apoptotic caspase cascade, ultimately resulting in the apoptosis of the target cell.
  • an HSA linker of the invention includes a cytotoxic polypeptide capable of killing a cancer cell.
  • the cytotoxic polypeptide inhibits the growth or metastasis of a cancer cell.
  • the cytotoxic polypeptide joined with an HSA linker of the invention can also be used to kill or inhibit the growth of cells associated with, necessary for, or beneficial to cancer growth, such as endothelial cells that form blood vessels that perfuse solid tumors.
  • an HSA linker of the invention can include two or more cytotoxic polypeptides so as to modulate (e.g., increase) the specificity, intensity, or duration of the cytotoxic or cytostatic effect on a target cell (e.g., a cancer cell).
  • the HSA linker of the invention is joined to an activatable form of cytotoxic polypeptide (e.g., a biologically-inactive pro-agent that is capable of activation upon cleavage by an enzyme or drug).
  • texposure e.g., in vivo
  • an enzyme or drug capable of cleaving the cytotoxic polypeptide renders the cytotoxic polypeptide biologically-active (e.g., cytotoxic or cytostatic).
  • a biologically-inactive cytotoxic polypeptide that can be converted to a biologically-active form for use with an HSA linker of the invention is a procaspase (e.g., procaspase 8 or 3).
  • the procaspase 8 domain of an HSA linker of the invention can be cleaved by TRAIL or FasL upon internalization by a target cell (e.g., a cancer cell). Once cleaved, the biologically active caspase 8 can promote apoptosis of the target cell.
  • the cytotoxic polypeptide joined to an HSA linker of the invention can include a full-length peptide, polypeptide, or protein, or biologically-active fragment thereof (e.g., a "death domain"), known to have cytotoxic or cytostatic properties.
  • Peptides, polypeptides, or proteins with cytotoxic or cytostatic properties can be altered (e.g., by making amino acid substitutions, mutations, truncations, or additions) to facilitate incorporation of the cytotoxic sequence into an agent of the invention. Desirable alterations include, for example, changes to the amino acid sequence that facilitate protein expression, longevity, cell secretion, and target cell toxicity.
  • the invention also features a nucleic acid molecule encoding a cytotoxic polypeptide as a fusion protein with an HSA linker of the invention, optionally including binding moieities and polypeptide connectors.
  • the nucleic acid molecule can be incorporated into a vector (e.g., an expression vector), such that, upon expression of the HSA linker of the invention in a cell transfected or transduced with the vector, the cytotoxic polypeptide, HSA linker, and binding moieties, if present, are operably linked (e.g., fused, contiguously-joined, or tethered together).
  • cytotoxic polypeptide of the present invention examples include, but are not limited to, apoptosis-inducing proteins such as cytochrome c (SEQ ID NO:39); caspases (e.g., caspase 3 (SEQ ID NO:36) and caspase 8 (SEQ ID NO:37)); procaspases, granzymes (e.g., granzymes A and B (SEQ ID NO: 38)); tumor necrosis factor (TNF) and TNF receptor family members, including TNF-alpha (TNF ⁇ ; SEQ ID NO:40)), TNF-beta, Fas (SEQ ID NO:41) and Fas ligand; Fas-associated death domain-like IL-l ⁇ converting enzyme (FLICE); TRAIL/APO2L (SEQ ID NO:45) and TWEAK/APO3L (see, e.g., U.S.
  • apoptosis-inducing proteins such as cytochrome c (S
  • Patent Application Publication No. 2005/0187177 herein incorporated by reference
  • pro-apoptotic members of the BcI- 2 family including Bax (SEQ ID NO:46), Bid, Bik, Bad (SEQ ID NO:42), Bak, and RICK (see, e.g., U.S. Patent Application Publication No. 2004/0224389, herein incorporate by reference); vascular apoptosis inducing proteins 1 and 2 (VAPl and VAP2; Masuda et al., Biochem. Biophys. Res. Commun.
  • pierisin SEQ ID NO:44; Watanabe et al., Biochemistry 96:10608- 10613 (1999)
  • apoptosis-inducing protein SEQ ID NO:43; AIP; Murawaka et al., Nature 8:298-307 (2001)
  • IL-I ⁇ propiece polypeptide see, e.g., U.S. Patent 6,191,269, herein incorporated by reference
  • apoptin and apoptin-associated proteins such as AAP-I (see, e.g., European Patent Application Publication No.
  • EP 1083224 herein incorporated by reference
  • anti-angiogenic factors such as endostatin and angiostatin
  • other apoptosis-inducing proteins including those described in the following International and U.S. Patent Application Publications, each herein incorporated by reference: U.S. 2003/0054994, U.S. 2003/0086919, U.S. 2007/0031423, WO 2004/0781 12, WO 2007/012430, and WO 2006/0125001 (intracellular domain of delta 1 and jagged 1).
  • the present invention also encompasses a naturally-occurring wild-type HSA linker, the amino acid and nucleotide sequences of which are provided in SEQ ID NOS:3 and 4, respectively, in the formation of binding, diagnostic, or therapeutic agents of the invention.
  • a naturally-occurring wild-type HSA linker the amino acid and nucleotide sequences of which are provided in SEQ ID NOS:3 and 4, respectively, in the formation of binding, diagnostic, or therapeutic agents of the invention.
  • one or more polypeptide connectors as described above, are covalently attached to the amino and/or carboxy termini of the HSA linker, or to an amino acid residue within the HSA linker sequence, to facilitate conjugation of one or more binding moieties.
  • the invention further features a conjugate that is formed using a truncated wild-type USA polypeptide, which can be combined with one or more polypeptide connectors or binding moieties.
  • a wild-type HSA polypeptide lacking 1, 2, 3, 4, 5, 10, 15, 20, 50, 100, 200 or more amino acids of the full-length wild-type HSA amino acid sequence i.e., SEQ ⁇ D NO:3
  • Truncations can occur at one or both ends of the HSA linker, or can include a deletion of internal residues. Truncation of more than one amino acid residue need not be linear.
  • wild-type HSA linkers of the invention include those having, in combination with one or more polypeptide connectors or binding moieties, one or more of domain I (SEQ ID NO:56; residues 1-197 of SEQ ID NO:3), domain II (SEQ [D NO:54; residues 189-385 of SEQ ID NO:3), or domain III (SEQ ID NO:57; residues 381- 585 of SEQ ID NO:3), or combinations thereof, e.g., domains I and II, I and III, and II and III.
  • Serum clearance rates of a conjugate of the invention can be optimized by testing conjugates containing a truncated wild- type HSA linker, as describe above. Additional HSA Linker Modifications
  • the invention further provides site-specific chemical modification of amino acid residues in the HSA linker polypeptide.
  • the correctly-folded tertiary structure of HSA displays certain amino acid residues on the external face of the protein.
  • Chemically-reactive amino acid residues e.g., cysteine
  • the invention also provides for the addition or removal of asparagine, serine, or threonine residues from an HSA linker polypeptide sequence to alter glycosylation of these amino acid residues.
  • Glycosylation sites added to an HSA linker are preferably surface-exposed, as discussed herein.
  • Glycosyl or other carbohydrate moieties introduced to an HSA linker can be directly conjugated to diagnostic, therapeutic, or cytotoic agents.
  • the invention features the substitution of surface-exposed amino acid residues of the HSA linker polypeptide with cysteine residues to allow for chemical conjugation of diagnostic, therapeutic, or cytotoxic agents.
  • Cysteine residues exposed on the surface of the HSA linker polypeptide (when folded into its native tertiary structure) allow the specific conjugation of a diagnostic, therapeutic, or cytotoxic agent to a thiol reactive group such as maleimide or haloacetyl.
  • a thiol reactive group such as maleimide or haloacetyl.
  • the nucleophilic reactivity of the thiol functionality of a cysteine residue to a maleimide group is about 1000 times higher compared to any other amino acid functionality in a protein, such as the amino group of a lysine residue or the N-terminal amino group.
  • Thiol specific functionality in iodoacetyl and maleimide reagents may react with amine groups, but higher pll (>9.0) and longer reaction times are required (Garman, 1997, Non-Radioactive Labelling: A Practical Approach, Academic Press, London).
  • the amount of free thiol in a protein may be estimated using the standard Ellman's assay. In some instances, reduction of the disulfide bonds with a reagent such as dithiothreitol (DTT) or selenol (Singh et al, Anal. Biochem. 304:147-156 (2002)) is required to generate the reactive free thiol.
  • DTT dithiothreitol
  • selenol Singh et al, Anal. Biochem. 304:147-156 (2002)
  • Sites for cysteine substitution can be identified by analysis of surface accessibility of the HSA linker (e.g., the identification of serine and threonine residues as suitable for substitution are described in Example 1 below).
  • the surface accessibility can be expressed as the surface area (e.g., square angstroms) that can be contacted by a solvent molecule, e.g., water.
  • the occupied space of water is approximated as a sphere with a 1.4 angstrom radius.
  • Software for calculating the surface accessibility of each amino acid of a protein is freely available or licensable.
  • an HSA linker of the invention is glycosylated.
  • Glycosylation of polypeptides is typically either N-linked or O-linked.
  • N-linked refers to the attachment of a carbohydrate moiety to the side chain of an asparagine residue.
  • the tripeptide sequences asparagine-X-serine and asparagine-X-threonine, where X represents any amino acid except proline, are the recognition sequences for enzymatic attachment of the carbohydrate moiety to the asparagine side chain.
  • X represents any amino acid except proline
  • O-linked glycosylation refers to the attachment of one of the sugars N-aceylgalactosamine, galactose, or xylose to a hydroxyamino acid, most commonly serine or threonine, although 5-hydroxyproline or 5-hydroxylysine may also be used.
  • Addition or deletion of glycosylation sites to the HSA linker is conveniently accomplished by altering the amino acid sequence such that one or more of the above-described tripeptide sequences (for N-linked glycosylation sites) is created.
  • the alteration may also be made by the addition, deletion, or substitution of one or more serine or threonine residues to the sequence of the original
  • HSA linker (for O-linked glycosylation sites).
  • the resulting carbohydrate structures on HSA can also be used for site-specific conjugation of cytotoxic, immunomodulatory or cytostatic agents as described above.
  • HSA Linker Agents in Combination with Therapeutic Agents
  • the invention further provides for the administration of the HSA linker agents described herein with one or more of the therapeutic, cytotoxic, or cytostatic agents described herein.
  • a patient suffering from breast cancer can be administered an HSA linker containing ErbB2 and ErbB3 scFvs (e.g., B2B3-1) can be co-administered with, e.g., doxorubicin, cyclophosphamide, and paclitaxel, a common chemotherapeutic regimen for the treatment of breast cancer.
  • Additional biological and chemical agents useful for the treatment of cancer are listed in Appendix C.
  • HSA Linker Agents in Combination with Radiotherapy or Surgery provides for the administration of an HSA linker agent of the invention prior to, concurrent with, or following radiotherapy or surgery.
  • a patient suffering from a proliferative disorder e.g., breast cancer
  • Radiotherapies suitable for use in combination with HSA linker agents of the invention include brachytherapy and targeted intraoperative radiotherapy (TARGIT).
  • compositions of the invention contain a therapeutically or diagnostically effective amount of an HSA linker conjugate of the invention that includes one or more of a binding moiety (e.g., antibodies or antibody fragments), diagnostic agent (e.g., radionuclide or chelating agents), or a therapeutic agent (e.g., cytotoxic or immunomodulatory agents) agent.
  • a binding moiety e.g., antibodies or antibody fragments
  • diagnostic agent e.g., radionuclide or chelating agents
  • a therapeutic agent e.g., cytotoxic or immunomodulatory agents
  • the active ingredients, an HSA linker conjugate of the invention can be formulated for use in a variety of drug delivery systems.
  • One or more physiologically acceptable excipients or carriers can also be included in the compositions for proper formulation.
  • compositions for use in the present invention are found in Remington's Pharmaceutical Sciences, Mack Publishing Company, Philadelphia, PA, 17th ed. (1985). For a brief review of methods for drug delivery, see, Langer Science 249:1527-1533 (1990).
  • the pharmaceutical compositions are intended for parenteral, intranasal, topical, oral, or local administration, such as by a transdermal means, for prophylactic and/or therapeutic treatment. Commonly, the pharmaceutical compositions are administered parenterally (e.g., by intravenous, intramuscular, or subcutaneous injection), or by oral ingestion, or by topical application.
  • compositions for parenteral administration that include an HSA linker of the invention, with or without one or more binding, diagnostic, and/or therapeutic agent conjugated thereto, dissolved or suspended in an acceptable carrier, preferably an aqueous carrier, e.g., water, buffered water, saline, PBS, and the like.
  • an acceptable carrier preferably an aqueous carrier, e.g., water, buffered water, saline, PBS, and the like.
  • the compositions may contain pharmaceutically acceptable auxiliary substances as required to approximate physiological conditions, such as pH adjusting and buffering agents, tonicity adjusting agents, wetting agents, detergents and the like.
  • compositions for oral delivery which may contain inert ingredients such as binders or fillers for the formulation of a tablet, a capsule, and the like.
  • this invention provides compositions for local administration, which may contain inert ingredients such as solvents or emulsifiers for the formulation of a cream, an ointment, and the like.
  • compositions may be sterilized by conventional sterilization techniques, or may be sterile filtered.
  • the resulting aqueous solutions may be packaged for use as is, or lyophilized, the lyophilized preparation being combined with a sterile aqueous carrier prior to administration.
  • the pH of the preparations typically will be between 3 and 1 1, more preferably between 5 and 9 or between 6 and 8, and most preferably between 7 and 8, such as 7 to 7.5.
  • the resulting compositions in solid form may be packaged in multiple single dose units, each containing a fixed amount of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in a scaled package of tablets or capsules, for example.
  • the composition in solid form can also be packaged in a container for a flexible quantity, such as in a squeezable tube designed for a topically applicable cream or ointment.
  • compositions containing an effective amount of an HSA linker conjugate can be administered to a mammal (e.g., a human) for prophylactic and/or therapeutic treatments.
  • a mammal e.g., a human
  • compositions of the invention containing an HSA linker conjugate are administered to a patient susceptible to or otherwise at risk of developing a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease).
  • Such an amount is defined to be a "prophylactically effective dose.”
  • the precise amounts again depend on the patient's state of health, but generally range from about 0.5 mg to about 400 mg of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) per dose (e.g., 10 mg, 50 mg, 100 mg, 200 mg, 300 mg, or 400 mg per dose) and from about 0.1 ⁇ g to about 300 mg of one or more immunomodulatory agents per dose (e.g., 10 ⁇ g, 30 ⁇ g, 50 ⁇ g, 0.1 mg, 10 mg, 50 mg, 100 mg, or 200 mg per dose).
  • a dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered prophylactically to a patient one or more times per hour, day, week, month, or year (e.g., 2, 4, 5, 6, 7, 8, 9, 10, 1 1, or 12 times per hour, day, week, month, or year). More commonly, a single dose per week of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered.
  • a dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered to a mammal (e.g., a human) already suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) in an amount sufficient to cure or at least partially arrest or alleviate one or more of the symptoms of the disease or condition and its complications.
  • a mammal e.g., a human
  • a disease or condition e.g., a cancer, autoimmune disease, or cardiovascular disease
  • Amounts effective for this use may depend on the severity of the disease or condition and general state of the patient, but generally range from about 0.5 mg to about 400 mg of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) per dose (e.g., 10 mg, 50 mg, 100 mg, 200 mg, 300 mg, or 400 mg per dose).
  • a dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered therapeutically to a patient one or more times per hour, day, week, month, or year (e.g., 2, 4, 5, 6, 7, 8, 9, 10, 11, or 12 times per hour, day, week, month, or year). More commonly, a single dose per week of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered.
  • the patient may receive an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in the range of about 0.5 to about 400 mg per dose one or more times per week (e.g., 2, 3, 4, 5, 6, or 7 or more per week), preferably about 5 mg to about 300 mg per dose one or more times per week, and even more preferably about 5 mg to about 200 mg per dose one or more times per week.
  • an HSA linker conjugate prepared with one or more of a binding, diagnostic, and/or therapeutic agent in the range of about 0.5 to about 400 mg per dose one or more times per week (e.g., 2, 3, 4, 5, 6, or 7 or more per week), preferably about 5 mg to about 300 mg per dose one or more times per week, and even more preferably about 5 mg to about 200 mg per dose one or more times per week.
  • the patient may also receive a biweekly dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in the range of about 50 mg to about 800 mg or a monthly dose of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto, in the range of about 50 mg to about 1 ,200 mg.
  • an HSA linker conjugate prepared with one or more of a binding, diagnostic, and/or therapeutic agent
  • a biweekly dose of an HSA linker conjugate prepared with one or more of a binding, diagnostic, and/or therapeutic agent in the range of about 50 mg to about 800 mg or a monthly dose of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto, in the range of about 50 mg to about 1 ,200 mg.
  • an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered to a patient in a typical dosage range of about 0.5 mg per week to about 400 mg per week, about 1.0 mg per week to about 300 mg per week, about 5 mg per week to about 200 mg per week, about 10 mg per week to about 100 mg per week, about 20 mg per week to about 80 mg per week, about 100 mg per week to about 300 mg per week, or about 100 mg per week to about 200 mg per week.
  • An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered in the range of about 0.5 mg every other day to about 100 mg every other day, preferably about 5 mg every other day to about 75 mg every other day, more preferably about 10 mg every other day to about 50 mg every other day, and even more preferably 20 mg every other day to about 40 mg every other day.
  • HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may also be administered in the range of about 0.5 mg three times per week to about 100 mg three times per week, preferably about 5 mg three times per week to about 75 mg three times per week, more preferably about 10 mg three times per week to about 50 mg three times per week, and even more preferably about 20 mg three times per week to about 40 mg three times per week.
  • an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered to a mammal (e.g., a human) continuously for 1 , 2, 3, or 4 hours; 1, 2, 3, or 4 times a day; every other day or every third, fourth, fifth, or sixth day; 1 , 2, 3, 4, 5, 6, 7, 8, 9, or 10 times a week; biweekly; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 times a month; bimonthly; 1 , 2, 3, 4, 5, 6, 7, 8, 9, or 10 times every six months; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 times a year; or biannually.
  • a mammal e.g., a human
  • An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered at different frequencies during a therapeutic regime.
  • an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered to a patient at the same frequency or at a different frequency.
  • the amount of one or more diagnostic or therapeutic agents and an HSA linker, or any agent conjugated thereto, required to achieve the desired therapeutic effect depends on a number of factors, such as the specific diagnostic or therapeutic agent(s) chosen, the mode of administration, and clinical condition of the recipient. A skilled artisan will be able to determine the appropriate dosages of one or more diagnostic or therapeutic agents and an HSA linker, or any agent conjugated thereto, to achieve the desired results.
  • Single or multiple administrations of the compositions comprising an effective amount of an HSA linker conjugate can be carried out with dose levels and pattern being selected by the treating physician.
  • the dose and administration schedule can be determined and adjusted based on the severity of the disease or condition in a mammal (e.g., a human), which may be monitored throughout the course of treatment according to the methods commonly practiced by clinicians or those described herein.
  • An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered to a mammalian subject, such as a human, directly or in combination with any pharmaceutically acceptable carrier or salt known in the art.
  • Pharmaceutically acceptable salts may include non-toxic acid addition salts or metal complexes that are commonly used in the pharmaceutical industry.
  • acid addition salts include organic acids such as acetic, lactic, pamoic, maleic, citric, malic, ascorbic, succinic, benzoic, palmitic, suberic, salicylic, tartaric, methanesulfonic, toluenesulfonic, or trifluoroacetic acids or the like; polymeric acids such as tannic acid, carboxymethyl cellulose, or the like; and inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid phosphoric acid, or the like.
  • Metal complexes include zinc, iron, and the like.
  • One exemplary pharmaceutically acceptable carrier is physiological saline.
  • physiologically acceptable carriers and their formulations are known to one skilled in the art and described, for example, in Remington's Pharmaceutical Sciences, (18 l edition), ed. A. Gennaro, 1990, Mack Publishing Company, Easton, PA.
  • the HSA linker conjugates of the invention can be used for diagnostic and therapeutic applications in a human, including, for example, the diagnosis or treatment of proliferative diseases (e.g., cancers, such as melanoma, clear cell sarcoma, and renal cancer) and autoimmune diseases (e.g., multiple sclerosis, rheumatoid arthritis, and uveitis).
  • proliferative diseases e.g., cancers, such as melanoma, clear cell sarcoma, and renal cancer
  • autoimmune diseases e.g., multiple sclerosis, rheumatoid arthritis, and uveitis.
  • proliferative diseases e.g., cancers, such as melanoma, clear cell sarcoma, and renal cancer
  • autoimmune diseases e.g., multiple sclerosis, rheumatoid arthritis, and uveitis.
  • the following discussion of human proliferative and autoimmune diseases is meant to provide
  • An HSA linker conjugate of the invention can be used to diagnose, treat, prevent, or eliminate proliferative diseases such as, but not limited to, breast cancer, melanoma, clear cell sarcoma, renal cancer (e.g., renal cell carcinoma), prostate cancer, lung cancer, gastric cancer, and ovarian cancer.
  • Binding moieties to be conjoined with an HSA linker of the invention for diagnostic or therapeutic application in a patient suspected of having or suffering from a proliferative disease may be chosen based on its ability to specifically bind, agonize, activate, antagonize, or inhibit target molecules (e.g., cell surface receptors such as tyrosine kinase receptors) associated with a proliferative disease.
  • target molecules e.g., cell surface receptors such as tyrosine kinase receptors
  • IGFR insulin-like growth factor receptor
  • FGFR fibroblast growth factor receptor
  • PDGFR platelet-derived growth factor receptor
  • VEGFR vascular endothelial growth factor receptor
  • TNFR tumor necrosis factor receptor
  • EGFR epidermal growth factor receptor
  • HSA linker conjugates of the invention can allow for detection (e.g., an HSA linker conjoined to a detectable label, as defined herein) or destruction (e.g., an HSA linker conjoined to a cytotoxic agent) of the bound cancer cell.
  • detection e.g., an HSA linker conjoined to a detectable label, as defined herein
  • destruction e.g., an HSA linker conjoined to a cytotoxic agent
  • breast cancer Common forms of breast cancer include invasive ductal carcinoma, a malignant cancer in the breast's ducts, and invasive lobular carcinoma, a malignant cancer in the breast's lobules.
  • Some types of breast cancer cells are known to highly express high levels of epidermal growth factor receptors, especially ErbB2 (i.e., HER2/neu).
  • ErbB2 i.e., HER2/neu
  • Aberrant signaling or unregulated activation of EGFRs has been linked to the development and progression of many cancers, including breast cancer.
  • Uncontrolled cellular proliferation mediated via dysfunctional EGFR pathways can be found in a wide variety of solid tumors of epithelial origin and data have linked tumor EGFR expression, overexpression, and dysregulation to advanced disease, metastatic phenotype, resistance to chemotherapy, and an overall poorer prognosis.
  • An FISA linker of the invention conjoined to one or more binding moieties specific for an
  • EGFR e.g., anti-ErbB2; trastuzumab
  • a diagnostic e.g., a detectable label
  • cytotoxic, cytostatic, or therapeutic agent e.g., a bispecif ⁇ c HSA linker conjugate that consists of binding moieties specific for ErbB2 and ErbB3, such as "B2B3-1," described further herein, can be employed to diagnose or treat cancers, e.g., breast, kidney, ovarian, and lung cancers.
  • an HSA linker conjugate of the invention used to treat breast cancer can be administered prior to (e.g., neoadjuvant chemotherapy), concurrent with, or following (e.g., adjuvant chemotherapy) radiotherapy or surgical intervention.
  • An HSA linker conjugate can also be co-administered with other compounds (e.g., antineoplastic agents, such as biological or chemical therapeutics) useful for the treatment of breast cancer.
  • antineoplastic agents listed in Table 1 including mitotic inhibitors (e.g., taxanes), topoisomerase inhibitors, alkylating agents (including, e.g., platinum-based agents), selective estrogen modulators (SHRM), aromatase inhibitors, antimetabolites, antitumor antibiotics (e.g., anthracycline antibiotics), anti-VEGF agents, anti-ErbB2 (HER2/neu) agents, and anti-ErbB3 agents, are known to be particularly useful for the treatment of breast cancer.
  • An HSA linker conjugate of the invention can be administered by a clinician in combination with any compound, including those listed in Appendix C, known or thought to be beneficial for the treatment of breast cancer.
  • Table 1 Exemplary antineoplastic agents for treatment of breast cancer in combination with HSA linker conjugates of the invention.
  • Kidney cancers such as renal cell carcinoma, are particularly resistant to traditional radiological and chemical therapies.
  • an HSA linker of the invention represents an attractive option for patients suffering from these cancers.
  • an HSA linker conjoined with binding moieties that agonize type I interferon or interleukin 2 receptors can be used to treat a renal cancer.
  • binding moieties that target and inhibit tumor vascularization e.g., anti-vascular endothelial growth factor (VEGF) antibodies such as bevacizumab
  • VEGF anti-vascular endothelial growth factor
  • An HSA linker conjugate of the invention can be used to diagnose, treat, prevent, or stabilize autoimmune diseases and disorders in e.g., a human patient, such as, e.g., multiple sclerosis (MS), insulin-dependent diabetes mellitus (IDDM), rheumatoid arthritis (RA), uveitis, Sjogren's syndrome, Grave's disease, psoriasis, and myasthenia gravis.
  • autoimmune diseases and disorders are caused by self-reactive elements of the immune system (e.g., T cells, B cells, and self-reactive antibodies).
  • binding moieties that inhibit, block, antagonize, or deplete e.g., anti-lymphocyte or anti- thymocyte globulins; basil iximab, daclizumab, or muromonab-CD3 monoclonal antibodies
  • binding moieties that function as inflammatory signaling inhibitors (ISI), as defined herein can be conjoined to an HSA linker of the invention for the treatment of autoimmunity.
  • binding moieties that inhibit or antagonize integrin function e.g., an integrin antagonist, as defined herein
  • the binding moiety is a soluble TNF receptor, such as etanercept or lenercept; an antibody directed against a pro-inflammatory cytokine or a proinflammatory cell surface signaling molecule, such as adalimumab, certolizumab, inflixamab, golimumab, and rituxan; a dominant-negative pro-inflammatory cytokine variant, such as XENP345, XPROTM1595, anakinra, and variants disclosed in U.S. Patent Application Publication Nos.
  • binding moiety is an interferon, as described herein.
  • Binding moieties that can be conjoined to an USA linker of the invention include, e.g., interferon -beta (REBIF® (IFN- ⁇ -la), AVONEX® (TFN- ⁇ -l a), and BETASERON® (IFN- ⁇ -lb)), interferon-t (TAUFERONTM), interferon-alpha (e.g., ROFERON-A® (IFN- ⁇ -2a), INTRON-A® (IFN- ⁇ -2b), REBETR ON® (TFN- ⁇ -2b), ALFERON-N® (IFN- ⁇ -n3), PEG-INTRON® (IFN- ⁇ -2b covalently conjugated with monomethoxy polyethylene glycol), INFERGEN® (a non-naturally occurring type 1 interferon with 88% homology to IFN- ⁇ -2b), or PEGAS YS® (pegylated
  • the present invention further provides HSA linker conjugates with binding moieties that antagonize these pro-inflammatory molecules or their specific receptors to treat autoimmunity.
  • HSA linker conjugates of the invention for the diagnosis and treatment of MS and RA are described below.
  • MS Multiple sclerosis
  • CNS central nervous system
  • T H I cells The infiltrating CD4 T cells (T H I cells) produce the pro-inflammatory cytokines 1L-2, IFN- ⁇ , and TNF- ⁇ that activate antigcn-prcscnting cells (APCs) such as macrophages to produce additional pro-inflammatory cytokines (e.g., IL-I ⁇ , JL-6, 1L-8, and 1L-12. IL-12 induces further IFN- ⁇ synthesis. The result is progressive demyelination of neuronal sheaths, leading to human disease. HSA linker conjugates can be used to aid in the diagnosis of MS.
  • APCs antigcn-prcscnting cells
  • Diagnostic HSA linker conjugates that include binding moieties, as defined herein, that specifically target one or more (e.g., a bispecific HSA linker conjugate) immune cell activation markers (e.g., CD69, CD28, HLA-DR, and CD45).
  • a bispecific HSA linker conjugate immune cell activation markers
  • An imbalance of one or more of these pro-inflammatory or immune cell activation mediators relative to other factors or cells may be using measured by an HSA linker conjugate conjoined with a diagnostic agent (e.g., a radioisotope or fluorochrome).
  • An HSA linker conjugate of the invention can be used to treat a person at risk of developing or suffering from MS or to prevent, ameliorate, or cure the symptoms of the disease.
  • binding moieties that specifically target and antagonize ⁇ 4 integrin (e.g., natalizumab), CD52 (e.g., alemtuzumab), CD80, P-selectin, sphingosine-1 -phosphate receptor- 1 (SlPRl), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CDl 1 (e.g., efalizumab), CDl 8, CD20 (e.g., rituximab), CD85, ICOS ligand, CCR2, CXCR3, or CCR5 can be useful when conjoined to an HSA linker of the invention for therapeutic use in a patient suffering from MS.
  • ⁇ 4 integrin e.g., natalizumab
  • CD52 e.g., alemtuzumab
  • CD80 P-selectin
  • SlPRl sphingosine-1 -phosphate receptor- 1
  • binding moieties that neutralize type I interferons e.g., interferons -alpha and -beta
  • antagonize type I interferon receptors e.g., IFNaRl
  • RA Rheumatoid arthritis
  • RA is a chronic, inflammatory autoimmune disorder that causes the immune system to attack the joints. It is a disabling and painful inflammatory condition, which can lead to substantial loss of mobility due to pain and joint destruction.
  • RA is a systemic disease, often affecting extra-articular tissues throughout the body including the skin, blood vessels, heart, lungs, and muscles.
  • HSA linker conjugates specific for one or both of these cell surface molecules are useful for the diagnosis of RA.
  • An HSA linker conjugate of the invention can be used to treat a person at risk of developing of suffering from RA to prevent, ameliorate, or cure the symptoms of the disease.
  • binding moieties as defined herein, that specifically target and antagonize TNF- ⁇ (e.g., etanercept, infliximab, and adalimumab), IL-I (e.g., anakinra), or CTLA-4 (e.g., abatacept).
  • Binding moieties that specifically target and deplete B cells e.g., an anti-CD20 antibody, such as rituximab
  • Uveitis specifically refers to inflammation of the middle layer of the eye, but may refer to any inflammatory process involving the interior of the eye.
  • Uveitis may be autoimmune or idiopathic in origin
  • An HSA linker conjugate of the invention can be used to treat a person at risk of developing of suffering from autoimmune uveitis to prevent, ameliorate, or cure the symptoms of the disease.
  • alpha-fetoprotein e.g., human AFP; NCBI Accession No. NM_001134
  • biologically-active fragments thereof can be conjoined to an HSA linker of the invention to reduce or eliminate inflammation associated with autoimmune or idiopathic uveitis. Kits
  • kits that include a pharmaceutical composition containing an HSA linker of the invention, and one or more of a binding moiety (e.g., antibodies or antibody fragments), a diagnostic agent (e.g., radionuclide or chelating agents), and a therapeutic agent (e.g., cytotoxic or immunomodulatory agents) with reagents that can be used to conjugate them to the HSA linker, if necessary, and including a pharmaceutically-acceptable carrier, in a therapeutically effective amount for treating a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease).
  • the kits include instructions to allow a practitioner (e.g., a physician, nurse, or patient) to administer the composition contained therein.
  • kits include multiple packages of the single-dose pharmaceutical composition(s) containing an effective amount of an HSA linker of the invention, or any binding (e.g., antibodies or antibody fragments (e.g., scFv)), diagnostic (e.g., radionuclide or chelating agents), and/or therapeutic (e.g., cytotoxic or immunomodulatory agents) conjugate thereof.
  • any binding e.g., antibodies or antibody fragments (e.g., scFv)
  • diagnostic e.g., radionuclide or chelating agents
  • therapeutic e.g., cytotoxic or immunomodulatory agents conjugate thereof.
  • instruments or devices necessary for administering the pharmaceutical composition(s) may be included in the kits.
  • a kit of this invention may provide one or more pre-filled syringes containing an effective amount of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
  • kits may also include additional components such as instructions or administration schedules for a patient suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) to use the pharmaceutical composition(s) containing an USA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
  • a disease or condition e.g., a cancer, autoimmune disease, or cardiovascular disease
  • Example 1 Methods to identify residues in the USA linker for site-specific conjugation of cytotoxic or cytostatic drugs.
  • Example 2 Methods to identify residues in the HSA linker for introduction of asparagine-linked glycosylation sites.
  • To identify regions for introduction of asparagine-linked glycosylation sites in HSA the crystal structure was studied to identify surface exposed (>30%) asparagine, serine and threonine residues that would be suitable for mutation. Glycosylation occurs on asparagine residues when the consensus sequence asparagine - x - serine/threonine is present, where x cannot be a proline.
  • Table 2 lists possible mutation sites in HSA for the introduction of asparagine-linked glycosylation.
  • Example 3 B2B3-1 is a bispecific scFv antibody fusion molecule consisting of B1D2, a human anti-
  • ErbB2 scFv antibody SEQ ID NO:27
  • H3 a human anti-ErbB3 scFv
  • the two scFvs are joined by a modified human serum albumin (HSA) linker.
  • HSA human serum albumin
  • the anti-ErbB3 scFv, 113 is recombinantly fused to the amino terminus of the HSA linker incorporating a short connector polypeptide and the anti-ErbB2 scFv, B1D2, is recombinantly fused to the carboxy terminus of the modified HSA linker incorporating an additional short connector polypeptide.
  • Each connector polypeptide was selected based on protease resistance properties.
  • the modified HSA linker contains two amino acid substitutions.
  • a cysteine residue at position 34 of native HSA was mutated to serine in order to reduce potential protein heterogeneity due to oxidation at this site.
  • B2B3-1 selectively binds ErbB2 over- expressing tumors by virtue of its high affinity an ⁇ i-ErbB2 scFv binding moiety, which has a kD in the range of 10.0 nM to 0.01 nM and more preferably a kD of about 0.3 nM.
  • B2B3-1 inhibits ligand-induced phosphorylation of ErbB3 with sub-nanomolar potency by exploiting the abundant expression of its dimerization partner, ErbB2, to specifically target cancer cells that express both receptors.
  • B2B3-1 variants inhibit HRG-induced pErbB3 in ZR75-1 breast cancer cells.
  • ZR75-1 breast cancer cells were treated with a dose range of B2B3-1 variants for 24 hours followed by HRG stimulation.
  • pErbB3 levels were measured in cell lysates and IC 50 values were calculated together with the percent of inhibition. Shown are the mean IC 5 0 values (Y axis) with error bars representing replicate experiments. Percent inhibition values are shown above the corresponding bar.
  • BT474 breast tumor cells As shown in Figure 6, treatment of ' BT474 breast tumor cells with B2B3-1 variants causes Gl cell cycle arrest and a decrease in the population of cells in S phase.
  • BT474 cells were treated with 1 ⁇ M of B2B3-1 variants and controls for 72 hours. After the end of treatment, cells were trypsinized, gently resuspended in hypotonic solution containing propidium iodide and single cells were analyzed by flow cytometry. Cell cycle distribution in Gl and S phases was measured using curve-fitting algorithms designed for cell cycle analysis (FlowJo software cell cycle platform).
  • B2B3-1 inhibits ErbB3 activation, utilizing the abundant expression of its dimerization partner, ErbB2, to target tumor cells.
  • a high affinity anti-ErbB2 scFv antibody, B1D2 facilitates targeting of B2B3-1 to tumor cells over-expressing ErbB2.
  • B1D2 is connected by a modified HSA linker to a lower affinity anti-ErbB3 scFv antibody, H3, which blocks binding of ErbB3's ligand, HRG, thereby inhibiting ErbB3 phosphorylation and downstream AKT signaling.
  • the ErbB2 binding scFv, B1D2 is derived from parent scFv C6.5, which possesses neither agonistic nor antagonistic activity. B 1D2, therefore, likely functions solely as a targeting agent.
  • the lower affinity binding of the ErbB3 binding scFv prevents strong binding of B2B3-1 to normal, noncancerous tissues which express ErbB3 but little or no ErbB2, thereby reducing the potential for non- specific toxicity.
  • the avidity effect of bispecif ⁇ c B2B3-1 binding to both receptors overcomes the low affinity of the ErbB3 scFv allowing strong inhibition of HRG interaction.
  • B2B3-1 The ability of B2B3-1 to inhibit HRG binding to ErbB3 was investigated using flow cytometry (FACS).
  • FACS flow cytometry
  • Cells of the breast cancer cell line BT-474-M3 (a variant of BT-474 that over- express ErbB2), were pretreated with 1 ⁇ M B2B3-1 then incubated with 10 nM biotinylated HRG l ⁇ EGF domain. After extensive washing, binding was assessed using streptavidin-AlexaFluor 647 conjugate. All incubations were performed at 4°C.
  • Figure 7 shows that B2B3-1 is capable of blocking the binding of HRG to ErbB3.
  • Figure 9 shows the effect of B2B3-1 treatment on signaling proteins in BT474 breast cancer cells.
  • Cells were treated with a dose range of B2B3-1 for 24 hours, followed by heregulin stimulation.
  • Levels of pErbB2, pErbB3, pErk and pAKT and their corresponding total protein levels were determined on cell lysates by Western blot analysis.
  • Figure 10 shows the immunoprecipitation-Western blot analysis of B2B3-1 treated B ' 1 ' 474 breast cancer cells.
  • Cells were treated with a dose range of B2B3-1 for 24 hours, followed by heregulin stimulation.
  • ErbB2-associated complexes were isolated from cell lysates using an anti- ErbB2 antibody followed by Western blot analysis to detect pErbB2 and pErbB3 and their corresponding total protein levels.
  • the anti-tumor activity of B2B3-1 was investigated in vitro using a number of assays.
  • the effect of B2B3-1 on the accumulation of BT-474 or SKBR3 cells in Gl phase and the concomitant decrease in S phase of the cell cycle was examined. Briefly, cells were treated with 1 ⁇ M B2B3-1 or PBS vehicle for 72 hours. After the end of treatment, cells were trypsinized, gently resuspended in hypotonic solution containing propidium iodide and single cells were analyzed by flow cytometry. Cell cycle distribution in Gl and S phases was measured using curve -fitting algorithms designed for cell cycle analysis (FlowJo software cell cycle platform).
  • B2B3-1 was found to modestly decrease the percentage of cells in S phase and increase the population of cells in Gl phase ( Figure 1 IA).
  • Figure 1 IA the number of cell colonies formed following treatment with B2B3-1 was studied.
  • BT-474 and SKBR3 breast cancer cells were plated in the presence of 1 ⁇ M B2B3-1 and compared to cells plated in media only. Media only or media including treatment was replenished every 3 days. After 14 days the number of colonies were counted and compared to untreated cells.
  • Figure 1 IB illustrates the 40-45% decrease in the number of colonies formed when cells are treated with B2B3-1 compared to control cells.
  • BT- 474 cells were seeded on plates integrated with microelectronic sensor arrays and treated with a dose titration of B2B3-1 or media only for 72 hours. Data reflecting the generation of cell-electrode impedance response was collected every hour for 72 hours and IC 50 values were calculated 68 hours after treatment.
  • Figure 1 1C illustrates that B2B3-1 was able to inhibit impedance of BT-474 cells with an IC 50 of 33 nM.
  • Example 12 We also investigated whether B2B3-1 exhibits agonistic activity based on its ability to simultaneously bind and cross-link ErbB2 and ErbB3 receptors. Serum starved ZR75-1 breast cancer cells were incubated with 1 ⁇ M B2B3-1 or PBS vehicle for 24 hours. Cells were also treated with B2B3-1 or PBS vehicle for 24 hours followed by a 10-minutc stimulation with 5 nM HRG l ⁇ EGF domain. Cells were lysed and the pErbB3 content of the lysates was assessed by ELlSA. Figure 12 shows that cells treated with B2B3-1 alone contained comparable levels of phosphorylated ErbB3 as untreated cells, indicating that B2B3-1 is non-agonistic.
  • B2B3-1 The ability of B2B3-1 to bind with specificity to ErbB2 and ErbB3 and not to related ErbB family members, EGFR and ErbB4, was investigated by ELISA. Plates were coated with the recombinant extracellular domain of either ErbB2 or ErbB3. Plates were blocked and incubated with a half-maximal binding concentration of B2B3-1 in the presence of a dilution series of competing recombinant extracellular domains of EGFR, ErbB2, ErbB3 or ErbB4. The results show only soluble ErbB2 extracellular domain blocked B2B3-1 binding to ErbB2-coated plates (Figure 13A).
  • B2B3-1 The ability of B2B3-1 to bind avidly to tumor cells expressing both ErbB2 and ErbB3 was studied.
  • SKO2 and SKO3 are variants of B2B3-1 that lack the ability to interact with ErbB2 or ErbB3, respectively.
  • MALME-3M melanoma cells which express approximately equal numbers of ErbB2 and ErbB3 receptors, were incubated with a dilution series of B2B3-1, SKO2, or SKO3 in the presence of saturating concentrations of a goat anti-HSA Alexafluor-647 conjugated antibody. Cell binding was assessed by flow cytometry and apparent binding affinities were determined for each molecule. Control cells were incubated with secondary antibody alone.
  • B2B3-1 The stability of B2B3-1 under physiological conditions was assessed by incubating 100 nM B2B3-1 in human, Cynomolgus monkey, or mouse serum at 37°C for a period of 120 hours.
  • Figures 15A-C show that B2B3-l remains stable in serum from all three species under physiological conditions, retaining comparable ability to bind both ErbB2 and ErbB3 at all time points measured.
  • Example 16 B2B3-1 dose response in BT-474-M3 breast cancer xenograft model.
  • mice bearing BT-474-M3 xenografts The efficacy of B2B3-1 in vivo was assessed using nude mice bearing BT-474-M3 xenografts. Ten mice per group were treated with 12 doses of 0.3, 1, 3, 10, 30 or 90 mg/kg of B2B3- 1 every 3 days. Control groups were administered PBS vehicle or HSA at an equimolar dose to the 90 mg/kg B2B3-1 dose. All doses were administered interperitoneally (i.p.). Tumor size was measured twice a week and the corresponding tumor volume was calculated. The results show that B2B3-1 treatment leads to significant reduction in BT-474-M3 tumor size as compared to the control group (Figure 16). Complete regressions were observed in each of the B2B3-1 treatment groups except mice treated with the lowest dose of B2B3-1 (0.1 mg/kg).
  • B2B3-1 is effective in multiple xenograft models in an ErbB2 dependent manner.
  • B2B3-1 was efficacious in the Calu-3 ( Figure 17A), SKO V-3 ( Figure 17B), NCI-N87 ( Figure 17C), and MDA-MB-361 (Figure 17E) xenograft models expressing ErbB2 at > 1 x 10 5 receptors/cell but worked less well in the ACHN ( Figure 17D) xenograft model which expresses 4.5 x 10 ErbB2 receptors/cell. Mice were treated with 30 mg/kg of B2B3-1 every 3 days.
  • ErbB2 converts B2B3-1 non-responder ADRr breast cancer xenograft model into a responder to B2B3-1 ( Figures 18A B).
  • ErbB2 was over-expressed in ADRr breast cancer cells using a retroviral expression system.
  • Transfected cells expressing high levels of ErbB2 (ADRr -E2) were selected using FACS and subsequently injected subcutaneously into nude mice to establish xenograft tumors. Mice were treated with 30 mg/kg of B2B3-1 every 3 days. While no response to B2B3-1 was observed in wild type ADRi- xenografts ( Figure 18A), ADRr-E2 xenografts ( Figure 18B) responded to B2B3- 1.
  • B2B3-1 activity correlates positively with ErbB2 expression levels in vitro ( Figure 19A) and in vivo (Figure 19B).
  • B2B3-1 inhibition of ErbB3 phosphorylation was determined in 9 tumor cell lines with expression levels of ErbB2 ranging from 5 x 10 4 receptors/cell to 2.4 x 10 6 receptors/cell using an ELlSA assay.
  • the extent of B2B3-l 's ability to inhibit ErbB3 phosphorylation to basal levels (% pErbB3 inhibition) was found to correlate positively with ErbB2 expression levels.
  • B2B3-1 activity was assessed in 10 tumor xenograft models expressing low to high levels of ErbB2. Xenograft response also correlated positively with ErbB2 expression levels.
  • B2B3-1 treatment of BT474-M3 breast tumor cells results in translocation of p27 k ⁇ l to the nucleus ( Figure 20A).
  • BT474-M3 cells were treated with 1 ⁇ M of B2B3-1 for 6 hours.
  • the subcellular location of p27 kipl was assessed using immunofluorescence techniques.
  • p27 ipl translocated to the nucleus, which has been shown to result in inhibition of cell proliferation.
  • p27 k ⁇ l remained in the cytoplasm of untreated cells.
  • BT-474-M3 cells treated with B2B3-1 for 72 hours were probed for the cell cycle regulator Cyclin Dl using Western blot analysis ( Figure 20B).
  • the cytoskeleton protein vinculin was used as a protein loading control in this experiment.
  • B2B3-1 treatment resulted in a decrease in the levels of Cyclin Dl compared to untreated cells.
  • B2B3-1 treatment of BT474-M3 breast tumor xenografts results in translocation of p27 kipl to the nucleus.
  • BT474 breast tumor xenografts were treated with B2B3-1 ( Figures 21A) at a dose of 30 mg/kg or an equimolar dose of USA ( Figures 21B) every 3 days for a total of 4 doses.
  • Increased nuclear staining for p27 kipl was observed in B2B3-1 treated tumors compared to HSA control tumors indicating an anti-proliferative effect of B2B3-1 in vivo.
  • Example 22 B2B3-1 treatment results in a reduction of the proliferation marker Ki67 in BT474 breast cancer xenograft tumors.
  • BT474-M3 breast tumor xenografts were treated with B2B3-1 (Figure 22A) at a dose of 30 mg/kg or an equimolar dose of HSA ( Figure 22B) every 3 days for a total of 4 doses.
  • B2B3-1 treatment results in a reduction of vessel density in BT474-M3 breast cancer xenograft tumors, as determined by assaying for CD31 expression ( Figures 23A-B).
  • BT474 breast tumor xenografts were treated with B2B3-1 ( Figure 23A) at a dose of 30 mg/kg or an equimolar dose of HSA ( Figure 23B) every 3 days for a total of 4 doses. Tumors were stained for the presence of vascular marker CD31. Tumors treated with B2B3-1 show a marked decrease in vessel density compared to control tumors treated with HSA.
  • Example 24 B2B3-1 inhibits phosphorylation ofErbB3 in vivo.
  • BT-474-M3 xenograft tumors were treated with 30 mg/kg B2B3-1 or 17.5 mg/kg HSA every 3 days for a total of 4 doses and tumors were harvested 24 hours after the final dose. Tumors were lysed and subjected to SDS-PAGE followed by Western analysis to assess relative levels of phosphorylation of B2B3-1 's target ErbB3. Equal quantities of protein were loaded in each lane and total protein levels were controlled by probing for beta tubulin.
  • Example 25 In vivo activity ofB2B3-l in BT-474-M3 xenografts which have reduced PTEN activity.
  • ShRNA technology was applied to knock out the activity of the tumor suppressor gene phosphatase and tensin homolog (PTEN) in BT-474-M3 breast cancer cells. Briefly, cultured
  • BT-474-M3 cells were transfected with shPTEN or shControlRNA by retroviral transfection.
  • Transfected cells with reduced PTEN were selected using FACS and subsequently injected subcutaneously into the right flank of nude mice to establish xenograft tumors.
  • Cells transfected with a control vector were injected into the left flank of the same mouse. Mice were treated with 30mg/kg B2B3-1 every 3 days or 10mg/kg Herceptin every week. HSA was injected as a control at an equimolar dose to B2B3-1. All injections were done i.p.
  • B2B3-1 and Herceptin promoted a reduction in the size of tumors formed by control BT- 474-M3 breast cancer cells ( Figure 25A), whereas only B2B3-1 (and not Herceptin) promoted a reduction in the size of tumors formed by BT-474-M3 breast cancer cells lacking expression of PTEN ( Figure 25B).
  • Example 26 B2B3-1 inhibits ErbB3 signaling in BT-474-M3 breast cancer cells having reduced PTEN activity.
  • B2B3-1 The ability of B2B3-1 to inhibit phosphorylation of ErbB3 signaling in tumor xenografts was studied using the PTEN deficient BT-474-M3 model.
  • Xenograft tumors of the engineered cell line or control cell line were treated with 30 mg/kg B2B3-1, 17.5 mg/kg HSA every 3 days or 10 mg/kg Herceptin weekly and tumors were harvested 24 hours after the final dose. Tumors were lysed and subjected to SDS-PAGE followed by Western analysis to assess relative levels of phosphorylation of B2B3-1 's target ErbB3, AKT and total PTEN levels. Equal quantities of protein were loaded in each lane and total protein levels were controlled by probing for PCNA.
  • the pharmacokinetic parameters for B2B3-1 were investigated in nu/nu mice. Animals were randomized into groups and administered intravenous (IV) with a single dose of 5, 15, 30, or 45 mg/kg B2B3-1 ( Figures 27A-D, respectively). Blood was collected pre-dose and at 0.5, 4, 8, 24, 48, 72, and 120 hours post dose. Three mice were used for each time point. Serum levels of B2B3-1 were measured using two ELISA methods. The first method requires functional binding of B2B3-1 to both ErbB2 and ErbB3 while the second method measures only the USA component of B2B3-1 in the serum.
  • the HSA ELISA utilizes a polyclonal-anti HSA capture antibody and a HRP-conjugated polyclonal anti-HSA detection antibody.
  • a reduction in B2B3-1 serum concentration measured using the ErbB2/ErbB3 binding method versus the HSA method would indicate a loss in functional B2B3-1.
  • Figures 27 A-D show that the pharmacokinetic properties of B2B3-1 are comparable when assessed using either ELlSA method, indicating that B2B3-1 is stable in circulation in mice.
  • Example 28 B2B3-1 serum concentrations were fit using a two-compartment, biexponential model and showed biphasic disposition. Terminal half-lives were calculated to be 17, 16, 23, and 18 hrs for the 5, 15, 30, or 45 mg/kg doses, respectively, and are shown in Table 4. Increases in B2B3-1 dose resulted in a linear increase in exposure (Figure 28).
  • Table 4 Pharmacokinetic properties of B2B3-1 in mice and Cynomolgus monkeys.
  • Example 29 Blood samples for pharmacokinetic analysis were also obtained from a dose range-finding toxicology study in female Cynomolgus monkeys.
  • animals were infused with 4, 20 or 200 mg/kg of B2B3-1 administered every 3 days for 4 doses. Sampling occurred prior to and 5 minutes after dosing on each dosing day (study days 1, 4, 7 and 10) to provide pre-dose and peak/trough concentrations, and at 1, 2, 4, 8, 24 and 48 hours after the end of the first infusion on day 1 and at 1, 2, 4, 8, 24, 48, 72 and 120 hours after the last infusion on day 10.
  • serum samples were also collected at 168, 336 and 456 hours after the last infusion.
  • the plasmid encoding the B2B3-1 bispecific scFv antibody fusion protein was created combining gene sequences of a unique human anti-ErbB3 scFv (designated "H3"), a human anti- ErbB2 scFv (designated "B1D2”), and a modified human serum albumin (HSA) linker.
  • H3 human anti-ErbB3 scFv
  • B1D2 human anti- ErbB2 scFv
  • HSA human serum albumin
  • the anti- ErbB3 scFv, H3 is recombinantly linked to the amino terminus of the HSA linker via a connecting peptide (Ala-Ala-Ser) and the anti-ErbB2 scFv, B 1D2, is genetically linked the carboxy terminus of the HSA linker via a connecting peptide (Ala-Ala- Ala-Leu).
  • the peptide connectors were formed through the introduction of restriction sites during construction of the mammalian expression vector and were synthesized with optimized codon usage for mammalian expression together with the single chain antibody fragments and HSA linker.
  • the B1D2 scFv was selected from a combinatorial phage display library created by mutagenesis of the ErbB2-binding scFv C6.5, which was selected from a non-immune phage display library.
  • the H3 scFv was selected from a non-immune phage display library originally made by Sheets et al.
  • the gene sequences encoding the B1D2 and H3 single chain antibody fragments were optimized for CHO cell codon preferences and synthesized for subsequent construction of the B2B3- 1 encoding plasmid.
  • the modified HSA linker contains two amino acid substitutions.
  • a cysteine residue at position 34 was mutated to serine in order to reduce potential protein heterogeneity due to oxidation at this site.
  • An asparaginc residue at amino acid 503 was mutated to glutamine, which in wild type HSA is sensitive to deamination and can result in decreased pharmacologic half-life.
  • the gene sequence encoding the modified HSA linker was synthesized with optimized codon usage for mammalian expression for subsequent construction of the B2B3-1 encoding plasmid.
  • Example 31 The B2B3-1 coding sequence was cloned into pMPlOk base vector using standard molecular biology techniques to create plasmid pMP10k4H3-mHSA-BlD2, shown in Figure 30. For the most part this construct employs commonly used genetic elements. B2B3-1 expression is driven by the human GAPD promoter. This vector utilizes genetic elements referred to as Matrix Attachment Regions or MAR elements. The MAR genetic elements control the dynamic organization of chromatin, and insulate nearby genes from the effect of surrounding chromatin thereby increasing copy number dependent, position-independent, expression of genes.
  • MAR elements Matrix Attachment Regions
  • MAR elements have been shown to improve the probability of isolating a clone exhibiting the desired level of expression for the production of a recombinant protein and to increase the stability of production.
  • the MAR elements used in the B2B3-1 constructs are non-coding human MAR elements.
  • a neomycin antibiotic resistance plasmid Figure 31
  • a hygromycin resistance plasmid Figure 32
  • Chinese Hamster Ovary CHO-Kl cells were purchased from ATCC (ATCC # CCL-61).
  • the CHO-Kl cell line is a serum and proline dependent adherent sub-clone of the parental CHO cell line created by T.T. Puck.
  • the CHO-Kl cells used for B2B3-1 transfection were pre-adapted for suspension growth in serum free media prior to transfection. An iterative transfection procedure was used to develop the B2B3-1 cell line.
  • CHO-Kl cells were sub passaged to 1.OxIO 6 cells/mL in SFM4CHO (Serum Free) medium (HyClonc, Logan, UT) supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine.
  • SFM4CHO (Serum Free) medium HyClonc, Logan, UT
  • 8mM L-glutamine 0.1 mM sodium hypoxanthine
  • OptiMEM medium Invitrogen Corp, Carlsbad, CA
  • the B2B3-1 expression plasmid (pMP10k4H3-mHSA-BlD2) and the neomycin resistance plasmid (Figure 30; pSV2-neo (Selexis, Inc., Marlborough, MA) were mixed together using a molar plasmid ratio of 75: l (B2B3-l :neomycin resistance).
  • the plasmid mixture was subsequently mixed with a cationic lipid transfection reagent (Lipofectamine LTX, Invitrogen Corp, Carlsbad, CA) and lipid/DNA complexes were allowed to form for thirty minutes.
  • the DNA/Lipid complex was than added to the CHO-Kl cells and the 24-well plates were placed in a 37°C, 5% CO 2 incubator.
  • Example 33 Selection and Screening for High Producers The contents of each transfection well were washed with PBS, trypsinized and distributed across two, ninety-six well plates.
  • the growth media used consisted of DMEM/F12 (Invitrogen Corp, Carlsbad, CA) with 10% FBS (Invitrogen Corp, Carlsbad, CA) and 500 mg/L of geneticin (G418; Invitrogen Corp, Carlsbad, CA).
  • Media in the 96-well plates was changed on day 4 to SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, 0.016 mM thymidine, and 500mg/L geneticin. Following an additional two weeks of culture in selection medium, surviving cells had formed well-defined colonies. The clones were evaluated using quantitative spot blot techniques. The top producing colonies were trypsinized, and expanded to a single well of a 24-well plate.
  • a seven day productivity assay was used to screen for high B2B3-1 producing colonies. Upon expansion the cells in 24-well plates were allowed to proliferate for seven days in SFM4CHO medium supplemented with 8 mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. The B2B3-1 concentration in the spent media was determined. Top clones from the 24- well scale were expanded into 125 mL baffled shake flasks.
  • the highest producing cell pool determined from the first round of transfection ⁇ supra) was transfected a second time to increase production. Twenty-four hours before transfection, the cell pool was sub passaged to 1.0x10 6 cells/mL in SFM4CHO (Serum Free) medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. On the day of transfection, cells were resuspended in OptiMEM medium (Invitrogen Corp, Carlsbad, CA) and 40,000 cells were placed in each well of a twenty-four well plate.
  • SFM4CHO Serum Free
  • the B2B3- 1 and hygromycin resistance plasmid ( Figure 32; pTK-Hyg (Clontech, Mountain View, CA)) were mixed together using a molar plasmid ratio of 50:1 (B2B3-1 :hygromycin resistance).
  • the plasmid mixture was subsequently mixed with a cationic lipid transfection reagent (Lipofectamine LTX, Invitrogen Corp) and lipid/DNA complexes were allowed to form for thirty minutes.
  • the DNA/Lipid complex was than added to the cell pool and the 24-well plates were placed in a 37 0 C, 5% CO 2 incubator.
  • the contents of each transfection well were washed with PBS, trypsinized and distributed across two, 96-well plates.
  • the growth media used consisted of DMEM/F12 supplemented with 10% FBS and 400 mg/L of hygromycin B (Invitrogen Corp).
  • Media in the 96-well plates was changed on day 4 to Hyclone SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, 0.016 mM thymidine , and 400 mg/L of hygromycin B.
  • After an additional two weeks of selection surviving cells had formed well-defined colonies.
  • the clones were evaluated using quantitative spot blot techniques. The top producing colonies were trypsinized, and expanded to a single well of a 24-well plate.
  • a seven day productivity assay was used to screen for high B2B3-1 producing colonies. Upon expansion the cells were allowed to proliferate for seven days, and the B2B3-1 concentration in the spent media was determined.
  • Top clones from the 24-well plates were expanded into 125 mL baffled shaker flasks in the Hyclone SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine.
  • a seven day study in shake flask was used to screen the cell pools for growth and B2B3-1 production.
  • the spent media was quantitated using Protein Aresin and an HPLC instrument.
  • the best growing and highest B2B3-1 -producing colony identified by the productivity assay was transferred from the 125 mL shaker flask and plated in five 96-well plates at a cell concentration calculated to give one cell/well.
  • the 96-well plates were placed in an incubator at 37 0 C and 5% CO 2 .
  • the wells were examined bi-weekly to track formation of colonies. Colonies arising from a single cell were identified based on the symmetrical shape of the colony. Wells containing such colonies were marked for further screening by 24-well 7-day assessment, and 125mL shaker flask 7- day assessment.
  • the second round of limiting dilution cloning was performed in a similar manner to the first round. An additional 100 mL fed batch evaluation was performed to confirm clone choice.
  • a pre- seed bank was cryopreserved.
  • B2B3-1 can be administered once a week via intravenous infusion over a period of 60 or 90 minutes, depending on patient tolerability.
  • B2B3-1 can be formulated in a sterile 20 mM L- histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human).
  • An HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16) can be administered to a patient diagnosed with breast cancer.
  • a patient diagnosed with breast cancer e.g., a patient whose cancer is diagnosed as expressing high levels of epidermal growth factor receptors, such as ErbB2 (HER2/neu) can be treated with an HSA linker conjoined to an ErbB2 biding moiety.
  • a physician providing care to a patient diagnosed with breast cancer can administer an HSA linker of the invention suitable and capable of providing the best therapeutic benefit to the patient. Selection of, for example, the binding moieties, conjoined to an HSA linker of the invention can be based on clinical determinants of the patient and specific cancer variant.
  • genotypic or histologic screens of cancer biopsies can reveal increased expression of ErbB2, indicating that an HSA linker of the invention that incorporates and anti-ErbB2 binding moiety (e.g., B2B3-1) can be used therapeutically.
  • an HSA linker of the invention that incorporates and anti-ErbB2 binding moiety (e.g., B2B3-1) can be used therapeutically.
  • B2B3-1 can be administered to a patient diagnosed with breast cancer once a week via intravenous infusion over a period of, e.g., 60 or 90 minutes, depending on patient tolerability.
  • B2B3-1 can be formulated in a sterile 20 mM L-histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human).
  • a clinician supervising the administration of B2B3-1 or any other HSA linker of the invention can follow common formulation and dosing practices to determine the proper course of therapy for any given patient.
  • the invention further provides for the co-administration of one or more therapeutic drugs or compounds in combination with the HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16), such as the common chemotherapeutic regimen for the treatment of breast cancer includes doxorubicin, cyclophosphamide, and paclitaxel.
  • a clinician can administer the HSA linker of invention (e.g., B2B3-1) in combination with surgical or radiation therapy to treat breast cancer in a patient in need thereof.
  • An HSA linker of the invention can be administered to a patient diagnosed with ovarian cancer (ovarian carcinoma), for example, a patient whose cancer is diagnosed as expressing high levels of epidermal growth factor receptors, such as ErbB2 (HER2/neu) can be treated with an HSA linker conjoined to an ErbB2 biding moiety.
  • ovarian carcinoma ovarian carcinoma
  • a physician providing care to a patient diagnosed with ovarian cancer can administer an HSA linker of the invention suitable and capable of providing the best therapeutic benefit to the patient. Selection of, for example, the binding moieties, conjoined to an HSA linker of the invention can be based on clinical determinants of the patient and specific cancer variant.
  • genotypic or histologic screens of cancer biopsies can reveal increased expression of ErbB2 or other targeting molecules (e.g., overexpressed receptors or ligands specific to the cancer), which can be targeted by an HSA linker of the invention that incorporates an anti-ErbB2 binding moiety (e.g., B2B3-1) or other target specific binding moiety.
  • ErbB2 or other targeting molecules e.g., overexpressed receptors or ligands specific to the cancer
  • an HSA linker of the invention that incorporates an anti-ErbB2 binding moiety (e.g., B2B3-1) or other target specific binding moiety.
  • B2B3-1 can be administered to a patient diagnosed with ovarian cancer once a week via intravenous infusion over a period of, e.g., 60 or 90 minutes, depending on patient tolerability.
  • B2B3-1 can be formulated in a sterile 20 mM L- histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human).
  • a clinician supervising the administration of B2B3-1 or any other HSA linker of the invention for the treatment of ovarian cancer can follow common formulation and dosing practices (e.g., intraperitoneal injection) to determine the proper course of therapy for any given patient.
  • the invention further provides for the co-administration of one or more therapeutic drugs or compounds in combination with the HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16).
  • a clinician can administer an HSA linker of invention in combination with surgical or radiation therapy to treat ovarian cancer in a patient in need thereof.
  • HSA linker conjugates of the invention can be constructed using one or more of the elements (groups A-E) listed in Table 5 below.
  • an HSA linker of the invention which is shown as Group C in Table 5 below, can incorporate one or more binding moieties selected from groups A and E shown in Table 5.
  • the HSA linker conjugates can also include one or more peptide connectors, which are selected from groups B and D in Table 5, at each of the amino and carboxy terminal ends of the HSA linker. Peptide connectors can be repeated or truncated to increase or decrease the length of the connector sequence.
  • HSA linkers specific embodiments of the HSA linkers, polypeptide connectors, and binding moieties discussed above.
  • Table 6 lists ten HSA linker conjugates with varying ErbB2- specific or ErbB3-specif ⁇ c binding moieties, as well as polypeptide connectors, at the amino and carboxy termini of an HSA linker of the invention.
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • mHSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • mHSA Polypeptide Connector Amino Acid Sequence
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • mHSA Polypeptide Connector Amino Acid Sequence
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • B2B3-4 (A5-mHSA-ML3.9) QVQLVQSGGGLVKPGGSLRLSCAASGFSFNTYDMNWVRQAPGKGLEWVSSISSSSSYIY YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDGVATTPFDYWGQGTLVT VSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQL PGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEAD YYCQSYDSSLSALF GGGTKLTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNE VTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFL QHKDDNPNLPRLVRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAP
  • B2B3-6 (B12-mHSA-F5B6H2) QVQLVQSGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSI GYADSVKGRFTISRDNAKNSLYLQMNSLRPEDTA VYYCARDLGAKQWLEGFD YWGQG TLVTVSSASTGGGGSGGGGSGGGGSSYELTQDPAVSVALGQTVRITCQGDSLRSYYAS WYQQKPGQAPVL VIYGKNNRPSGIPDRFSGSTSGNSASLTITGAQAEDEAD YYCNSRDS SGNHWVFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFED HVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP ERNECFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFKKYLYEIAR
  • B2B3-8 (F4-mHSA-F5B6H2) QVQLQESGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSTISGSGGST YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGYSSSWSEVASGYWGQG TLVTVSSASTGGGGSGGGGSGGGGSAIVMTQSPSSLSASVGDRVTITCRASQGIRNDLG WYQQKAGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYFCQQAHSF PPTFGGGTKVEIKRGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVK LVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERN ECFLQHKDDNPNLPRL VRPEVDVMCTAFHDNEETFLKKYL YEIARRHPY
  • Cytochrome c Homo sapiens NP_061820 MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGI IWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE
  • TNF ⁇ Tumor Necrosis Factor Alpha
  • AIP Apoptosis Inducing Protein
  • TRAIL TNF-related apoptosis-inducing ligand
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • HSA Human Serum Albumin
  • CDR loops are highlighted within H3 (blue with pink CDRs) and B1D2 (pink with cyan CDRs). Connectors to modified HSA are shown in red.

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Abstract

The present invention relates to a human serum albumin (HSA) linker and binding, diagnostic, and therapeutic agents conjugated thereto. Also disclosed are methods and kits for the diagnostic and therapeutic application of an HSA linker conjugate.

Description

HUMAN SERUM ALBUMIN LINKERS AND CONJUGATES THEREOF
FIELD OF THE INVENTION
The invention provides a human serum albumin (HSA) linker and binding, diagnostic, and therapeutic conjugates thereof. In one embodiment, the HSA linker includes two amino acid substitutions. The invention further provides methods for the manufacture and administration of diagnostic and therapeutic HSA linker conjugates.
BACKGROUND OF THE INVENTION
The serum albumins belong to a family of proteins that includes alpha-fetoprotein and human group-specific component, also known as vitamin-D binding protein. The serum albumins are the major soluble proteins of the circulatory system and contribute to many vital physiological processes. Serum albumin generally comprises about 50% of the total blood component by dry weight. The albumins and their related blood proteins also play an important role in the transport, distribution, and metabolism of many endogenous and exogenous ligands in the human body, including a variety of chemically diverse molecules, such as fatty acids, amino acids, steroids, calcium, metals such as copper and zinc, and various pharmaceutical agents. The albumin family of molecules are generally thought to facilitate transfer of many of these ligands across organ-circulatory interfaces, such as the liver, intestines, kidneys, and the brain. The albumins are thus involved in a wide range of circulatory and metabolic functions.
Human serum albumin (HSA) is a protein of about 66,500 IcD and is comprised of 585 amino acids including at least 17 disulphide bridges. As with many of the members of the albumin family, human serum albumin plays an important role in human physiology and is located in virtually every human tissue and bodily secretion. As indicated above, HSA has theability to bind and transport a wide spectrum of ligands throughout the circulatory system, including the long-chain fatty acids, which are otherwise insoluble in circulating plasma.
SUMMARY OF THE INVENTION In a first aspect, the invention features an agent that includes a human serum albumin (HSA) linker having an amino acid sequence set forth in any one of SEQ ID NOS:6-10 and first and second binding moieties selected from antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, receptors (e.g., cell surface receptors), ligands, aptamers, and biologically-active fragments thereof, in which the first binding moiety is bonded to the amino terminus of the HSA linker and the second binding moiety is bonded to the carboxy terminus of the HSA linker. In one embodiment, the first binding moiety specifically binds ErbB3 and the second binding moiety specifically binds ErbB2. In other embodiments, the HSA linker has the amino acid sequences set forth in SEQ ID NOS:9 or 10.
In a second aspect, the invention features an agent that includes an HSA linker that has an amino acid sequence set forth in any one SEQ ID NOS: 1 1-15 and at least first and second binding moieties, which can be selected from antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, receptors (e.g., cell surface receptors), ligands, aptamers, and biologically-active fragments thereof, wherein the first binding moiety is bonded to the amino terminus and the second binding moiety is bonded to the carboxy terminus of the sequence. In an embodiment, three or more binding moieties (e.g., 4, 5, 6, 7, 8, 9, 10, or more) can be included in the agent; these additional binding moities can be added to the agent, e.g., in tandem (e.g., 2, 3, 4, or 5 or more in tandem) with the first or second binding moiety. In one embodiment, the first binding moiety specifically binds ErbB3 and the second binding moiety specifically binds ErbB2. In other embodiments, the HSA linker has the amino acid sequences set forth in SEQ ID NOS: 14 or 15. In a third aspect, the invention provides an HSA linker that has an amino acid sequence having at least 90% sequence identity to the sequence set forth in SEQ ID NO:1 , and a serine residue at position 34 and a glutamine residue at position 503 of the amino acid sequence set forth in SEQ ID NO: 1. In one embodiment, the amino acid sequence has at least 95% sequence identity to the sequence set forth in SEQ ID NO: 1 . In another embodiment, the HSA linker has the amino acid sequence set forth in SEQ ID NO: 1.
In a fourth aspect, the invention features an agent that includes an HSA linker having at least 90% amino acid sequence identity to the sequence set forth in SEQ ID NO:1 and at least a first binding moiety. In one embodiment, the agent includes a first polypeptide connector that binds the first binding moiety to the HSA linker. In a fifth aspect, the invention features an agent that includes an HSA linker having an amino acid sequence set forth in any one of SEQ ID NOS: 11-15, or a fragment or variant of any one of these sequences, and at least a first binding moiety.
In either the fourth or fifth aspect of the invention, the agent further includes a first polypeptide connector (e.g., AAS, AAQ, or AAAL) that binds the first binding moiety to the amino or carboxy terminus of the HSA linker. In an embodiment, the first connector covalently binds the first binding moiety to the HSA linker.
In either the fourth or fifth aspect of the invention, the agent further includes at least a second binding moiety. In an embodiment, the agent further includes a second polypeptide connector (e.g., AAS, AAQ, or AAAL) that binds the second binding moiety to the LISA linker. In other embodiments, the second connector binds the second binding moiety to the amino or carboxy terminus of the HSA linker. In a further embodiment, the second connector covalently binds the second binding moiety to the HSA linker. In other embodiments, the agent further includes three or more binding moieties which are included in tandem with the first or second binding moiety; the three or more binding moieties can further include a connector sequence that joins the three or more binding moieties to the first or second binding moiety and to each other.
In either the fourth or fifth aspect of the invention, the agent includes a first polypeptide connector that covalently binds a first binding moiety to the amino terminus of the HSA linker and a second polypeptide connector that covalently binds a second binding moiety to the carboxy terminus of the HSA linker. In one embodiment, the first connector has the amino acid sequence AAS or AAQ and the second connector has the amino acid sequence set forth in SFQ ID NO:5.
In either the fourth or fifth aspect of the invention, the first or second binding moiety (or third or more binding moiety) is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv')2) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab')2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, aptamer, or biologically- active fragment thereof. In other embodiments, the agents of the invention include combinations of these different types of binding moities. In one embodiment, at least the first or second binding moiety is a human or humanized single-chain Fv molecule.
In an embodiment of any one of the first, second, third, fourth, or fifth aspects of the invention, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to a protein selected from the group consisting of an insulin- like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, an integrin (e.g., an α4 integrin or a β-1 integrin), P-selectin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDl 1 , CDl 8, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD 106 (vascular cell adhesion molecule 1 (VCAMl), CD 166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-rclatcd apoptosis- inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL 12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, MΛRT-1 , gplOO, MAGE-I, cphrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA),
LewisY, MUC-I, epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA 125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof. In a further embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor). In another embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to alpha-fctoprotein (AFP) or an interferon, or a biologically- active fragment thereof. In a further embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, ctanercept, pertuzumab, cetuximab, panitumumab, or anakinra.
In any one of the first, second, third, fourth, or fifth aspects of the invention, the agent is conjoined to a diagnostic, a therapeutic agent, or both. In one embodiment, the diagnostic agent is a detectable label, such as a radioactive, fluorescent, or heavy metal label. In another embodiment, the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I or II inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation. Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistaLin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives.
In any one of the first, second, third, fourth, or fifth aspects of the invention, the agent is admixed with a pharmaceutically acceptable carrier, excipient, or diluent. In one embodiment, the agent exhibits an in vivo half-life of between 6 hours and 7 days. In another embodiment, the agent exhibits an in vivo half-life greater than 8 hours.
In a sixth aspect, the invention features a method for treating a mammal having a disease or disorder by administering any one of the HSA agents described in the first five aspects. In one embodiment, the disease or disorder is associated with cellular signaling through a cell surface receptor. In another embodiment, the mammal is a human. In a further embodiment, the disease or disorder is a proliferative or autoimmune disease. Proliferative diseases include melanoma, clear cell sarcoma, head and neck cancer, bladder cancer, breast cancer, colon cancer, ovarian cancer, endometrial cancer, gastric cancer, pancreatic cancer, renal cancer, prostate cancer, salivary gland cancer, lung cancer, liver cancer, skin cancer, and brain cancer. Autoimmune diseases include multiple sclerosis, psoriasis, myasthenia gravis, uveitis, systemic lupus erythematosus, and rheumatoid arthritis. In one embodiment, the HSA agent is administered in combination with one or more therapeutic agents, such as an antineoplastic agent.
In a seventh aspect, the invention features a method for making an HSA linker agent by bonding at least a first binding moiety to the amino terminus and a second binding moiety to the carboxy terminus of the amino acid sequence set forth in any one of SEQ ID NOS: 1, 3, or 6-15, or a sequence having at least 90%, 95%, 97%, or 100% sequence identity to a sequence set forth in any one of SEQ ID NOS: 1, 3, or 6-15. In one embodiment, the first or second binding moiety is covalently joined to the amino or carboxy terminus of an HSA linker. In other embodiments, a third or additional binding moiety (e.g., a fourth, fifth, sixth, seventh, eighth, ninth, or tenth binding moiety) is covalently joined in tandem with the first or second binding moiety to the amino or carboxy terminus of the HSA linker. In another embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv')2) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab')2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, or aptamer. In another embodiment, the first or second binding moiety (or, if present, the third or further binding moiety) is a human or humanized single-chain Fv molecule. In yet another embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, an integrin (e.g., an α4 integrin or a β-1 integrin), P-selectin, sphingosine-1 -phosphate receptor-1 (Sl PR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDl 1, CD18, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD106 (vascular cell adhesion molecule 1 (VCAMl), CD 166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, MART-I, gplOO, MAGE-I , ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I, epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA 125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof. In a further embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor). In another embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof. In a further embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, or anakinra. In another embodiment, the agent is conjoined to a diagnostic or therapeutic agent. In one embodiment, the diagnostic agent is a detectable label, such as a radioactive, bioluminescent, fluorescent, heavy metal, or epitope tag. In another embodiment, the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I and II inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation. Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives. In a further embodiment, the agent is admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
In a eighth aspect, the invention features a method for making an HSA agent by substituting one or more surface-exposed amino acid residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1, 3, and 6-15 with a substitute amino acid capable of chemical modification that allows conjugation of a diagnostic or therapeutic agent. In one embodiment, the substitute amino acid is cysteine and the surface exposed amino acid residues are serine or threonine. In another embodiment, the chemical modification results in a covalent bond between the substitute amino acid and the diagnostic or therapeutic agent. In a further embodiment, the surface-exposed amino acid residues is threonine at position 496, serine at position 58, threonine at position 76, threonine at position 79, threonine at position 83, threonine at position 125, threonine at position 236, serine at position 270, serine at position 273, serine at position 304, serine at position 435, threonine at position 478, threonine at position 506, or threonine at position 508.
In a ninth aspect, the invention features a method for making an HSA agent by substituting one or more of the residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1 , 3, and 6-15 with an asparagine, serine, or threonine, thereby incorporating a glycosylation site within the HSA agent. In a tenth aspect, the invention features a method for making an HSA agent by substituting one or more of the asparagine, serine, or threonine residues in the amino acid sequences set forth in any one of SEQ ID NOS:1, 3, and 6-15 with any amino acid other than asparagine, serine, or threonine, thereby removing a glycosylation site from the HSA agent. In an eleventh aspect, the invention features an agent that has at least 90% sequence identity to one of the amino acid sequences set forth in SEQ ID NOS:16-25. In one embodiment, the agent has at least 95% sequence identity to one of the amino acid sequences set forth in SEQ ID NOS: 16- 25. In another embodiment, the agent has one of the amino acid sequences set forth in SEQ ID NOS:16-25. In a further embodiment, the agent is conjoined to a diagnostic or therapeutic agent. Diagnostic agents include detectable labels, such as a radioactive, bioluminescent, fluorescent, or heavy metal labels, or epitope tags. Fluorescent molecules that can serve as detectable labels include green fluorescent protein (GFP), enhanced GFP (eGFP), yellow fluorescent protein (YFP), cyan fluorescent protein (CFP), red fluorescent protein (RFP), and dsRed. In one embodiment, the bioluminescent molecule is luciferase. In another embodiment, the epitope tag is c-myc, hemagglutinin, or a histidine tag. In a further embodiment, the therapeutic agent is a cytotoxic polypeptide such as cytochrome c, caspase 1-10, granzyme A or B, tumor necrosis factor-alpha (TNF-α), TNF-β, Fas, Fas ligand, Fas-associated death doman-like IL- lβ converting enzyme (FLICE), TRAIL/APO2L, TWEΛK/APO3L, Bax, Bid, Bik, Bad, Bak, RICK, vascular apoptosis inducing proteins 1 and 2 (VAPl and VAP2), pierisin, apoptosis-inducing protein (AIP), ΪL-lα propiece polypeptide, apoptin, apoptin-associated protein 1 (AAP-I), endostatin, angiostatin, and biologically-active fragments thereof. An agent of the invention can be combined with one or more therapeutic agents such as cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
In an embodiment of any aspect of the invention, the first and second binding moieties (and, if present, one or more of the third or further binding moiety) specifically bind the same target molecule. In another embodiment of any aspect of the invention, the first and second binding moieties (and, if present, one or more of the third or further binding moiety) specifically bind different target molecules. In a further embodiment of any aspect of the invention, the first and second binding moieties (and, if present, one or more of the third or further binding moiety) specifically bind different epitopes on the same target molecule.
In a twelfth aspect, the invention features a polypeptide linker that has amino acid residues 25-44 and 494-513 of the amino acid sequence set forth in SEQ ID NO:1. In one embodiment, the polypeptide linker has amino acid residues 25-70 and 450-513 of the amino acid sequence set forth in SEQ ID NO:1. In another embodiment, the polypeptide linker has amino acid residues 15-100 and 400-520 of the amino acid sequence set forth in SEQ ID NO:1. In a further embodiment, the polypeptide linker has amino acid residues 10-200 and 300-575 of the amino acid sequence set forth in SEQ ID NO: 1. In another embodiment, the polypeptide linker has amino acid residues 5-250 and 275-580 of the amino acid sequence set forth in SEQ ID NOr I .
In the twelfth aspect of the invention, the polypeptide linker includes at least a first binding moiety. In one embodiment, the polypeptide linker includes at least a first polypeptide connector that binds the first binding moiety to the amino or carboxy terminus of the polypeptide linker. In another embodiment, the first polypeptide connector covalently binds the first binding moiety to the polypeptide linker. In a further embodiment, the polypeptide linker includes a second binding moiety. In one embodiment, the polypeptide linker includes a second polypeptide connector that binds the second binding moiety to the polypeptide linker. In other embodiments, the second connector binds the second binding moiety to the amino or carboxy terminus of the polypeptide linker. In a further embodiment, the second connector covalently binds the second binding moiety to the polypeptide linker. In other embodiments, the polypeptide linker includes a third, fourth, fifth, sixth, seventh, eighth, ninth, or tenth binding moiety. In other embodiments, these additional binding moieties are present in tandem with one or both of the first or second binding moiety. In yet other embodiments, a polypeptide connector (e.g., AAS, AAQ, or AAAL) separates one or more of these additional binding moities from each other, the first or second binding moiety, or the polypeptide linker.
In the twelfth aspect of the invention, the polypeptide linker includes a first polypeptide connector that covalently binds a first binding moiety to the amino terminus of the polypeptide linker and a second polypeptide connector that covalently binds a second binding moiety to the carboxy terminus of the polypeptide linker. In one embodiment, the first connector has the amino acid sequence AAS or AAQ and the second connector has the amino acid sequence set forth in SEQ ID NO:5.
In the twelfth aspect of the invention, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is an antibody, single-chain Fv molecule, bispecific single chain Fv ((scFv')2) molecule, domain antibody, diabody, triabody, hormone, Fab fragment, F(ab')2 molecule, tandem scFv (taFv) fragment, receptor (e.g., cell surface receptor), ligand, aptamer, or biologically-active fragment thereof. In one embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is a human or humanized single- chain Fv molecule. In the twelfth aspect of the invention, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to a protein selected from the group consisting of an insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, an integrin (e.g., an α4 integrin or a β-1 integrin), P-selectin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen- 1 (LFA-I), CD4, CDI l, CD 18, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CDl 06 (vascular cell adhesion molecule 1 (VCAMl), CDl 66 (activated leukocyte cell adhesion molecule (ALCAM)), CDl 78 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, MART-I, gplOO, MAGE-I, ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I, epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof. In a further embodiment, the first or second binding moiety is or specifically binds to erythroblastic leukemia viral oncogene homolog (ErbB) receptor (e.g., ErbBl receptor; ErbB2 receptor; ErbB3 receptor; and ErbB4 receptor). In another embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is or specifically binds to alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof. In a further embodiment, one or more of the first or second binding moiety (or, if present, the third or further binding moiety) is natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, or anakinra.
In the twelfth aspect of the invention, the polypeptide linker is conjoined to a diagnostic, a therapeutic agent, or both. In one embodiment, the diagnostic agent is a detectable label, such as a radioactive, fluorescent, or heavy metal label. In another embodiment, the therapeutic agent is a cytotoxic agent, cytostatic, or immunomodulatory agent. Cytotoxic agents include alkylating agents, antibiotics, antineoplastic agents, antiproliferative agents, antimetabolites, tubulin inhibitors, topoisomerase I or Il inhibitors, hormonal agonists or antagonists, immunomodulators, DNA minor groove binders, and radioactive agents, or any agent capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation. Antineoplastic agents include cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, calcachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and their derivatives. In one embodiment, the polypeptide linker is admixed with a pharmaceutically acceptable carrier, excipient, or diluent. In another embodiment, the polypeptide linker exhibits an in vivo half-life of between 6 hours and 7 days. In a further embodiment, the polypeptide linker exhibits an in vivo half-life greater than 8 hours.
A thirteenth aspect of the invention features an agent of any of the prior aspects of the invention (one through twelve), in which the HSA polypeptide linker sequence is replaced by another polypeptide linker sequence. For example, the polypeptide linker sequence could be a mammalian, non-human serum albumin polypeptide sequence, such as, e.g., a bovine, murine, feline, and canine serum albumin (BSA) polypeptide sequence. In other embodiments this polypeptide linker sequence is between 5 and 1,000 amino acids in length, e.g., 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 200, 300, 400, 500, 600, 700, 800, or 900 amino acids in length, or any number of amino acids within this range. In other embodiments, the polypeptide linker sequence includes a single amino acid (including, but not limited to, e.g., glycine, alanine, serine, glutamine, leucine, and valine), or combinations of amino acids. In another embodiment, the HSA polypeptide linker sequence is replaced by an alpha- fetoprotein polypeptide (AFP) polypeptide sequence, e.g., mammalian AFP polypeptide sequence, such as a human, murine, bovine, or canine AFP polypeptide sequence. In an embodiment, the AFP linker sequence of the agent can correspond to the full-length human AFP polypeptide sequence (a.a. 1-609; SEQ ID NO: 58), the mature human AFP polypeptide sequence lacking amino acids 1-18 of the signal sequence (a.a., 19-609 of SEQ ID NO: 58), or fragments thereof. In other embodiments, the AFP polypeptide linker sequence contains at least 5 to 8 contiguous amino acids, preferably at least 10, 20, or 50 contiguous amino acids, more preferably at least 100 contiguous amino acids, and most preferably at least 200, 300, 400, or more contiguous amino acids of SEQ ID NO: 58, or has at least 90% sequence identity (e.g., at least 95%, 97%, 99%, or more sequence identity) to a continguous polypeptide sequence of SEQ ID NO: 58 having one or more of these lengths. For example, an AFP polypeptide linker sequence having 90% sequence identity to a 34-mer human AFP peptide corresponding to amino acids 446-479 of SEQ ID NO: 58 (LSEDKLLACGEGΛΛDIIIGHLCIRHEMTPVNPGV; SEQ ID NO: 59) may contain up to 3 amino acids altered from the 446-479 segment of SEQ ID NO: 58. One such example of sequence deviation in biologically active human AFP fragments is found in, e.g., U.S. Patent No. 5,707,963 (incorporated by reference herein), which discloses a 34-amino acid fragment of human AFP (SEQ ID NO: 59) with flexibility at two amino acid residues (amino acid 9 and 22 of SEQ ID NO: 59). Other examples of AFP polypeptide linker sequences include, e.g., amino acids 19-198 of SEQ ID NO: 58 (human AFP Domain I), amino acids 217-408 of SEQ ID NO: 58 (human AFP Domain II), amino acids 409-609 of SEQ ID NO: 58 (human AFP Domain III), amino acids 19-408 of SEQ ID NO: 58 (human AFP Domain I+II), amino acids 217-609 of SEQ ID NO: 58 (human AFP Domain II+III), and amino acids 285-609 of SEQ TD NO: 58 (human AFP Fragment I). In another embodiment, the human AFP polypeptide linker sequence is an 8-amino acid sequence that includes amino acids 489-496 (i.e., EMTPVNPG) of SEQ ID NO: 58.
A fourteenth aspect of the invention features kits that include any of the HSA linkers, HSA linker agents, or any other agents described in the first, second, third, fourth, fifth, eleventh, twelfth, and thirteenth aspects of the invention. The kits further include instructions to allow a practitioner (e.g., a physician, nurse, or patient) to administer the compositions and agents contained therein. In an embodiment, the kits include multiple packages of a single- or multi-dose pharmaceutical composition containing an effective amount of an agent of the invention, e.g,. an HSA linker of the invention that includes, e.g., one or more binding moieties (e.g., antibodies or antibody fragments (e.g., scFv)), diagnostic agents (e.g., radionuclide or chelating agents), and/or therapeutic agents (e.g., cytotoxic or immunomodulatory agents). Optionally, instruments or devices necessary for administering the pharmaceutical composition(s) may be included in the kits. For instance, a kit of this invention may provide one or more pre-filled syringes containing an effective amount of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto. Furthermore, the kits may also include additional components such as instructions or administration schedules for a patient suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) to use the pharmaceutical composition(s) containing, e.g., an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
DEFINITIONS
The term "antibody" as used interchangeably herein, includes whole antibodies or immunoglobulins and any antigen-binding fragment or single chains thereof. Antibodies, as used herein, can be mammalian (e.g., human or mouse), humanized, chimeric, recombinant, synthetically produced, or naturally isolated. In most mammals, including humans, antibodies have at least two heavy (H) chains and two light (L) chains connected by disulfide bonds. Each heavy chain consists of a heavy chain variable region (abbreviated herein as VH) and a heavy chain constant region. The heavy chain constant region consists of three domains, CHI , CH2, and CH3 and a hinge region between CHI and CH2. Each light chain consists of a light chain variable region (abbreviated herein as VL) and a light chain constant region. The light chain constant region consists of one domain, CL. The VH and VL regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDR), interspersed with regions that are more conserved, termed framework regions (FR). Each VH and VL is composed of three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FRl , CDRl, FR2, CDR2, FR3, CDR3, FR4. The variable regions of the heavy and light chains contain a binding domain that interacts with an antigen. The constant regions of the antibodies may mediate the binding of the immunoglobulin to host tissues or factors, including various cells of the immune system (e.g., effector cells) and the first component (CIq) of the classical complement system. Antibodies of the present invention include all known forms of antibodies and other protein scaffolds with antibody-like properties. For example, the antibody can be a human antibody, a humanized antibody, a bispecific antibody, a chimeric antibody, or a protein scaffold with antibody-like properties, such as fibronectin or ankyrin repeats. The antibody also can be a Fab, Fab'2, scFv, SMIP, diabody, nanobody, aptamers, or a domain antibody. The antibody can have any of the following isotypes: IgG (e.g., IgGl, IgG2, IgG3, and IgG4), IgM, IgA (e.g., IgAl, IgA2, and IgAsec), IgD, or IgE. Antibodies that can be used as binding moieties, as defined herein, in combination with an HSA linker of the invention include, but are not limited to, natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, and panitumumab. The term "antibody fragment," as used herein, refers to one or more fragments of an antibody that retain the ability to specifically bind to an antigen (e.g., ErbB2). The antigen-binding function of an antibody can be performed by fragments of a full-length antibody. Examples of binding fragments encompassed within the term "antigen-binding portion" of an antibody include but are not limited to: (i) a Fab fragment, a monovalent fragment consisting of the VL, VH, CL, and CHI domains; (ii) a F(ab')2 fragment, a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting of the VH and CHI domains; (iv) a Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (v) a dAb including VH and VL domains; (vi) a dAb fragment (Ward et al, Nature 341:544-546 (1989)), which consists of a VH domain; (vii) a dAb which consists of a VH or a VL domain; (viii) an isolated complementarity determining region (CDR); and (ix) a combination of two or more isolated CDRs which may optionally be joined by a synthetic linker. Furthermore, although the two domains of the Fv fragment, VL and VH, are coded for by separate genes, they can be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the VL and VH regions pair to form monovalent molecules (known as single chain Fv (scFv); see e.g., Bird et al, Science 242:423-426 (1988) and Huston et al, Proc. Natl. Acad. Sci. USA 85:5879-5883
(1988)). These antibody fragments are obtained using conventional techniques known to those with skill in the art, and the fragments are screened for utility in the same manner as are intact antibodies. Antibody fragments can be produced by recombinant DNA techniques, or by enzymatic or chemical cleavage of intact immunoglobulins. By "autoimmune disease" is meant a disease in which an immune system response is generated against self epitopes or antigens. Examples of autoimmune diseases include, but are not limited to, alopecia areata, ankylosing spondylitis, antiphospholipid syndrome, autoimmune Addison's disease, autoimmune hemolytic anemia, autoimmune hepatitis, Behcet's disease, bullous pemphigoid, cardiomyopathy, celiac Sprue-dermatitis, chronic fatigue immune dysfunction syndrome (CFIDS), chronic inflammatory demyelinating polyneuropathy, Churg-Strauss syndrome, cicatricial pemphigoid, CREST syndrome, cold agglutinin disease, Crohn's disease, discoid lupus, essential mixed cryoglobulinemia, fibromyalgia-fibromyositis, Grave's disease, Guillain-Barre syndrome, Hashimoto's thyroiditis, hypothyroidism, idiopathic pulmonary fibrosis, idiopathic thrombocytopenia purpura (ITP), IgA nephropathy, insulin dependent diabetes, juvenile arthritis, lichen planus, lupus, Meniere's disease, mixed connective tissue disease, multiple sclerosis, pemphigus vulgaris, pernicious anemia, polyarteritis nodosa, polychondritis, polyglandular syndromes, polymyalgia rheumatica, polymyositis and dermatomyositis, primary agammaglobulinemia, primary biliary cirrhosis, psoriasis, Raynaud's phenomenon, Reiter's syndrome, rheumatic fever, rheumatoid arthritis, sarcoidosis, scleroderma, Sjogren's syndrome, Stiff-Man syndrome, systemic lupus erythematosus (SLE), Takayasu arteritis, temporal arteritis/giant cell arteritis, ulcerative colitis, uveitis (e.g., birdshot retinochoroidopathy uveitis and sarcoid uveitis), vasculitis, vitiligo, Wegener's granulomatosis, and myasthenia gravis.
By "binding moiety" is meant any molecule that specifically binds to a target epitope, antigen, ligand, or receptor. Binding moieties include but are not limited to antibodies (e.g., monoclonal, polyclonal, recombinant, humanized, and chimeric antibodies), antibody fragments (e.g., Fab fragments, Fab'2, scFv antibodies, SMIP, domain antibodies, diabodics, minibodies, scFv- Fc, affibodies, nanobodies, and domain antibodies), receptors, ligands, aptamers, and other molecules having a known binding partner.
By "biologically-active" is meant that a molecule, including biological molecules, such as nucleic acids, peptides, polypeptides, and proteins, exerts a physical or chemical activity on itself or other molecule. For example, a "biologically-active" molecule may possess, e.g., enzymatic activity, protein binding activity (e.g., antibody interactions), or cytotoxic activities are "biologically-active."
The term "chimeric antibody" refers to an immunoglobulin or antibody whose variable regions derive from a first species and whose constant regions derive from a second species. Chimeric antibodies can be constructed, for example, by genetic engineering, from immunoglobulin gene segments belonging to different species (e.g., from a mouse and a human). By "connector" or "polypeptide connector" is meant an amino acid sequence of 2 to 20 residues in length that is covalently attached to one or both of the amino or carboxy termini of an HSA linker of the invention, or is covalently attached to one or more residues of an HSA linker of the invention (e.g., a residue between the amino and carboxy terminal residues). In preferred embodiments, the polypeptide connector attached to the amino terminus of an HSA linker has the amino acid sequence "AAS" or "AAQ" and the connector attached to the carboxy terminus has the amino acid sequence "AAAL" (SEQ ID NO:5).
The terms "effective amount" or "amount effective to" or "therapeutically effective amount" means an amount of an agent of the invention (e.g., an HSA linker bonded with one or more binding moieties or diagnostic or therapeutic agents with or without a connector sequence) sufficient to produce a desired result, for example, killing a cancer cell, reducing tumor cell proliferation, reducing inflammation in a diseased tissue or organ, or labeling a specific population of cells in a tissue, organ, or organism (e.g., a human).
The term "human antibody," as used herein, is intended to include antibodies, or fragments thereof, having variable regions in which both the framework and CDR regions are derived from human germline immunoglobulin sequences as described, for example, by Kabat et ai, {Sequences of proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242 (1991)). Furthermore, if the antibody contains a constant region, the constant region also is derived from human germline immunoglobulin sequences. The human antibodies may include amino acid residues not encoded by human germline immunoglobulin sequences (e.g., mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo). However, the term "human antibody", as used herein, is not intended to include antibodies in which CDR sequences derived from the germline of another mammalian species, such as a mouse, have been grafted onto human framework sequences (i.e., a humanized antibody or antibody fragment).
The term "humanized antibody" refers to any antibody or antibody fragment that includes at least one immunoglobulin domain having a variable region that includes a variable framework region substantially derived from a human immunoglobulin or antibody and complementarity determining regions (e.g., at least one CDR) substantially derived from a non-human immunoglobulin or antibody. As used herein, an "inflammatory signaling inhibitor" or "ISI" is an agent that decreases the binding between a pro-inflammatory cytokine (e.g., TNF-alpha, TNF-beta, or IL-I) and its receptor (e.g., TNF receptor 1 or 2, or IL-I receptor, respectively); decreases the binding of activating molecules to pro-inflammatory cell surface signaling molecules (e.g., CD20, CD25, CTLA -4, CD80/CD86, or CD28); or decreases the downstream activation of, or activity of, intracellular signaling molecules that are activated following the binding of pro-inflammatory cytokines to their receptors or the binding of activating molecules to pro-inflammatory cell surface signaling molecules (e.g., an agent that decreases the activation of, or activity of, signaling molecules in the p38 MΛPK signaling pathway). Preferably, the decrease in binding between a pro-inflammatory cytokine and its receptor, the decrease in binding of an activating molecule to a pro-inflammatory cell surface signaling molecule, or the decrease in intracellular signaling which occurs following the binding of pro-inflammatory cytokines to their receptors or activating molecules to pro-inflammatory cell surface signaling molecules is by at least about 10%, preferably by 20%, 30%, 40%, or 50%, more preferably by 60%, 70%, 80%, 90% or more (up to 100%). An ISI may act by reducing the amount of pro-inflammatory cytokine (e.g., TNF-alpha, TNF-beta, or IL-I) freely available to bind the receptor. For example, an ISI may be a soluble pro-inflammatory cytokine receptor protein (e.g., a soluble TNF receptor fusion protein such as etanercept (ENB REL®) or lenercept), or a soluble proinflammatory cell surface signaling molecule (e.g., a soluble CTLA -4 (abatacept)), or an antibody directed against a pro-inflammatory cytokine or a pro-inflammatory cell surface signaling molecule (e.g., an anti-TNF antibody, such as adalimumab, certolizumab, inflixamab, or golimumab; an anti- CD20 antibody, such as rituximab; or TRU-015 (TRUBION®)). In addition, an TSI may act by disrupting the ability of the endogenous wild-type pro-inflammatory cytokine or the proinflammatory cell surface signaling molecule to bind to its receptor (e.g., TNF receptor 1 or 2, IL-I receptor, or CDl Ia (e.g., efalizumab (RAPTIVA®, Genentech))). Examples of dominant-negative TNF-alpha variants are XENP345 (a pegylated version of TNF variant A145R/I97T) and XproTMl 595, and further variants disclosed in U.S. Patent Application Publication Nos. 20030166559 and 20050265962, herein incorporated by reference. An example of a dominant negative IL-I variant is anakinra (KINERET®), which is a soluble form of IL-I that binds to the IL- 1 receptor without activating intracellular signaling pathways. Inflammatory signaling inhibitors, which can be used in the present invention, are also small molecules which inhibit or reduce the signaling pathways downstream of pro-inflammatory cytokine or pro-inflammatory cell surface signaling molecules (e.g., DE 096). Examples of ISIs of this kind include inhibitors of p38 MAP kinase, e.g., 5-amino-2-carbonylthiopene derivatives (as described in WO 04/089929, herein incorporated); ARRY-797; BIRB 796 BS, (l -5-tert-butyl-2-p-tolyl-2H-pyrazol-3-yl)-3-[4- 2(morpholin-4-yl-ethoxy)-naphtalen-l-yl]-urea); CHR-3620; CNI-1493; FR-167653 (Fujisawa Pharmaceutical, Osaka, Japan); ISIS 101757 (Isis Pharmaceuticals); ML3404; NPC31 145;
PD169316; PHZl 112; RJW67657, (4-(4-(4-fluorophenyl)-l-(3-phenylpropyl)-5-(4-pyridinyl)-lH- imidazol-2-yl)-3-butyn-l-ol; SCIO-469; SB202190; SB203580, (4-(4-fiuorophenyl)-2-(4- methylsulfinylphenyl)-5-(4-pyridyl)lH-imidazole); SB239063, trans- l-(4-hydroxycyclohexyl)-4-(4- fluorophenyl-methoxypyridimidin-4-yl)imidazole; SB242235; SD-282; SKF-86002; TAK 715; VX702; and VX745. Furthermore, an ISI may interfere with the processing of a pro-inflammatory cytokine (e.g., TNF-alpha and TNF-beta) from its membrane bound form to its soluble form. Inhibitors of TACE are ISIs of this class. Examples of inhibitors of TACE include BB-1 101, BB- 3103, BMS-561392, butynyloxyphenyl β-sulfone piperidine hydroxomates, CH4474, DPC333, DPH-067517, GM6001, GW3333, Ro 32-7315, TAPI-I , TΛPI-2, and TMI 005. Additional examples of ISIs include short peptides derived from the E. coli heat shock proteins engineered for disease-specific immunomodulatory activity (e.g., dnaJPl).
By "integrin antagonist" is meant any agent that reduces or inhibits the biological activity of an integrin molecule (e.g., a reduction or inhibition of at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, or more relative to the biological activity in the absence of the integrin antagonist), such as the α4 subunit of an integrin molecule. The agent may act directly or indirectly on the α4 integrin subunit (NCBI Accession No. P13612; Takada et al, EMBO J. 8: 1361 -1368 (1989)) by inhibiting the activity or expression of the α4 integrin subunit, or may act on a target to which the intact integrin containing an α4 subunit binds. For example, an antibody or blocking peptide that binds to vascular cell adhesion molecule- 1 (VCAM-I), thus preventing the binding of α4βl integrin to VCAM-I is considered an integrin antagonist for purposes of the present invention. Non-limiting exemplary integrin antagonists suitable for use with the present invention may include proteins, blocking peptides, antibodies, such as natalizumab (TYSABRI®), and small molecule inhibitors. Examples of α4 integrin antagonists include, but are not limited to, natalizumab (Elan/Biogen Idee; see, e.g., U.S. Patent Nos. 5,840,299; 6,033,665; 6,602,503; 5,168,062; 5,385,839; and 5,730,978; incorporated by reference herein), oMEPUPA-V (Biogen; U.S. Patent No. 6,495,525; incorporated by reference herein), alefacept, CDP-323 (Celltech); firategrast (SB-68399; GlaxoSmithKline); TR-9109 (Pfizer); ISIS-107248 (Antisense Therapeutics); R-1295 (Roche); and TBC-4746 (Schering-Plough). Additional non-limiting examples of α4 integrin antagonists include the small molecules described in U.S. Patent Nos. 5,821,231; 5,869,448; 5,936,065; 6,265,572; 6,288,267; 6,365,619; 6,423,728; 6,426,348; 6,458,844; 6.479,666; 6,482,849; 6,596,752; 6,667,331; 6,668,527; 6,685,617; 6,903,128; and 7,015,216 (each herein incorporated by reference); in U.S. Patent Application Publication Nos. 2002/0049236; 2003/0004196; 2003/0018016; 2003/0078249; 2003/0083267; 2003/0100585; 2004/0039040; 2004/0053907; 2004/0087574; 2004/0102496; 2004/0132809; 2004/0229858; 2006/0014966; 2006/0030553; 2006/0166866; 2006/0166961; 2006/0241132; 2007/0054909; and 2007/0232601 (each herein incorporated by reference); in European Patent Nos. EP 0842943; EP 0842944; EP 0842945; EP 0903353; and EP 0918059; and in PCT Publication Nos. WO 95/15973; WO 96/06108; WO 96/40781; WO 98/04247; WO 98/04913; WO 98/42656; WO 98/53814; WO 98/53817; WO 98/53818; WO 98/54207; WO 98/58902; WO 99/06390; WO 99/06431 ; WO 99/06432; WO 99/06433; WO 99/06434; WO 99/06435; WO 99/06436; WO 99/06437; WO 99/10312; WO 99/10313; WO 99/20272; WO 99/23063; WO 99/24398; WO 99/25685; WO 99/26615; WO 99/26921; WO 99/26922; WO 99/26923; WO
99/35163; WO 99/36393; WO 99/37605; WO 99/37618; WO 99/43642; WO 01/42215; and WO 02/28830; all of which are incorporated by reference herein. Additional examples of α4 integrin antagonists include the phenylalanine derivatives described in: U.S. Patent Nos. 6,197,794; 6,229,011 ; 6,329,372; 6,388,084; 6,348,463; 6,362,204; 6,380,387; 6,445,550; 6,806,365; 6,835,738; 6,855,706; 6,872,719; 6,878,718; 6,91 1,451 ; 6,916,933; 7,105,520; 7,153,963; 7,160,874; 7,193,108; 7,250,516; and 7,291,645 (each herein incorporated by reference). Additional amino acid derivatives that are α4 integrin antagonists include those described in, e.g., U.S. Patent Application Publication Nos. 2004/0229859 and 2006/0211630 (herein incorporated by reference), and PCT Publication Nos. WO 01/36376; WO 01/47868; and WO 01/70670; all of which are incorporated by reference herein. Other examples of α.4 integrin antagonists include the peptides, and the peptide and semi-peptide compounds described in, e.g., PCT Publication Nos. WO 94/15958; WO 95/15973; WO 96/00581 ; WO 96/06108; WO 96/22966 (Leu-Asp-Val tripeptide; Biogen, Inc.); WO 97/02289; WO 97/03094; and WO 97/49731. An additional example of an α4 integrin antagonist is the pegylated molecule described in U.S. Patent Application Publication No. 2007/066533 (herein incorporated by reference). Examples of antibodies that are α4 integrin antagonists include those described in, e.g., PCT Publication Nos. WO 93/13798; WO 93/15764; WO 94/16094; and WO 95/19790. Additional examples of α4 integrin antagonists are described herein.
By "interferon" is meant a mammalian (e.g., a human) interferon -alpha, -beta, -gamma, or - tau polypeptide, or biologically-active fragment thereof, e.g., IFN-α (e.g., IFN-α-la; see U.S. Patent Application No. 20070274950, incorporated herein by reference in its entirety), IFN-α-lb, IFN-α-2a (see PCT Application No. WO 07/044083, herein incorporated by reference in its entirety), and IFN- α-2b), IFN-β (e.g., described in U.S. Patent No. 7,238,344, incorporated by reference in its entirety; IFN-b-la (AVONEX® and REBIF®), as described in U.S. Patent No. 6,962,978, incorporated by reference in its entirety, and IFN-β-lb (BETASERON®, as described in U.S. Patent Nos. 4,588,585; 4,959,314; 4,737,462; and 4,450,103; incorporated by reference in their entirety), IFN-g, and IFN-t (as described in U.S. Patent No. 5,738,845 and U.S. Patent Application Publication Nos. 20040247565 and 20070243163; incorporated by reference in their entirety).
By "HSA linker conjugate" is meant a human serum albumin (HSA) linker protein of the invention in combination with one or more binding moieties, polypeptide connectors, diagnostic agents, or therapeutic agents.
The term "monoclonal antibody" as used herein refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to conventional (polyclonal) antibody preparations which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen. Monoclonal antibodies can be prepared using any art recognized technique and those described herein such as, for example, a hybridoma method, as described by Kohler et al., Nature 256:495 (1975), a transgenic animal {e.g., Lonberg et al, Nature 368(6474):856-859 (1994)), recombinant DNA methods {e.g., U.S. Pat. No. 4,816,567), or using phage, yeast, or synthetic scaffold antibody libraries using the techniques described in, for example, Clackson et al., Nature 352:624-628 (1991) and Marks et al., J. MoI. Biol. 222:581-597 (1991).
By "pharmaceutically acceptable carrier" is meant a carrier which is physiologically acceptable to the treated mammal while retaining the therapeutic properties of the compound with which it is administered. One exemplary pharmaceutically acceptable carrier is physiological saline. Other physiologically acceptable carriers and their formulations are known to one skilled in the art and described, for example, in Remington 's Pharmaceutical Sciences, (18th edition), ed. A. Gennaro, 1990, Mack Publishing Company, Easton, PA incorporated herein by reference.
By "proliferative disease" or "cancer" is meant any condition characterized by abnormal or unregulated cell growth. Examples of proliferative diseases include, for example, solid tumors such as: sarcomas (e.g., clear cell sarcoma), carcinomas (e.g., renal cell carcinoma), and lymphomas; tumors of the breast, colon, rectum, lung, oropharynx, hypopharynx, esophagus, stomach, pancreas, liver, bilecyst, bile duct, small intestine, urinary system (including the kidney, bladder, and epithelium of the urinary tract), female genital system (including the uterine neck, uterus, ovary, chorioma, and gestational trophoblast), male genital system (including the prostate, seminal vesicle, and testicles), endocrine glands (including the thyroid gland, adrenal gland, and pituitary body), skin (including angioma, melanoma, sarcoma originating from bone or soft tissue, and Kaposi's sarcoma), brain and meninges (including astrocytoma, neuroastrocytoma, spongioblastoma, retinoblastoma, neuroma, neuroblastoma, neurinoma and neuroblastoma), nerves, eyes, hemopoietic system (including chloroleukemia, plasmacytoma and dermal T lymphoma/leukemia), and immune system (including lymphoma, e.g., Hodgkin's lymphoma and non-Hodgkin's lymphoma). An example of a non-solid tumor proliferative disease is leukemia (e.g., acute lymphoblastic leukemia).
The term "recombinant antibody," refers to an antibody prepared, expressed, created, or isolated by recombinant means, such as (a) antibodies isolated from an animal (e.g., a mouse) that is transgenic or transchromosomal for immunoglobulin genes (e.g., human immunoglobulin genes) or a hybridoma prepared therefrom, (b) antibodies isolated from a host cell transformed to express the antibody, e.g., from a transfcctoma, (c) antibodies isolated from a recombinant, combinatorial antibody library (e.g., containing human antibody sequences) using phage, yeast, or synthetic scaffold display, and (d) antibodies prepared, expressed, created, or isolated by any other means that involve splicing of immunoglobulin gene sequences (e.g., human immunoglobulin genes) to other DNA sequences.
By "specifically bind" is meant the preferential association of a binding moiety (e.g., an antibody, antibody fragment, receptor, ligand, or small molecule portion of an agent of the invention) to a target molecule (e.g., a secreted target molecule, such as a cytokine, chemokine, hormone, receptor, or ligand) or to a cell or tissue bearing the target molecule (e.g., a cell surface antigen, such as a receptor or ligand) and not to non-target cells or tissues lacking the target molecule. It is recognized that a certain degree of non-specific interaction may occur between a binding moiety and a non-target molecule (present alone or in combination with a cell or tissue). Nevertheless, specific binding may be distinguished as mediated through specific recognition of the target molecule. Specific binding results in a stronger association between the binding moiety (e.g., an antibody) and e.g., cells bearing the target molecule (e.g., an antigen) than between the binding moiety and e.g., cells lacking the target molecule. Specific binding typically results in greater than 2-fold, preferably greater than 5-fold, more preferably greater than 10-fold and most preferably greater than 100-fold increase in amount of bound binding moiety (per unit time) to e.g., a cell or tissue bearing the target molecule or marker as compared to a cell or tissue lacking that target molecule or marker. Binding moieties bind to the target molecule or marker with a dissociation constant of e.g., less than 10"6M, more preferably less than 10"7M, 10'8M, 10"9M, 10"10M, 10"11M, or 10"12M, and most preferably less than 10"13M, 10"14M, or 10"15M. Specific binding to a protein under such conditions requires a binding moiety that is selected for its specificity for that particular protein. A variety of assay formats are appropriate for selecting binding moieties (e.g., antibodies) capable of specifically binding to a particular target molecule. For example, solid-phase ELISA immunoassays are routinely used to select monoclonal antibodies specifically immunoreactive with a protein. See Harlow & Lane, Antibodies, A Laboratory Manual, Cold Spring Harbor Publications, New York (1988), for a description of immunoassay formats and conditions that can be used to determine specific immunoreactivity. The term "substantial identity" or "substantially identical," when used in the context of comparing a polynucleotide or polypeptide sequence to a reference sequence, means that the polynucleotide or polypeptide sequence is the same as the reference sequence or has a specified percentage of nucleotides or amino acid residues that are the same at the corresponding locations within the reference sequence when the two sequences are optimally aligned. For instance, an amino acid sequence that is "substantially identical" to a reference sequence has at least about 60% identity, preferably 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher percentage identity (up to 100%) to the reference sequence (e.g., the HSA amino acid sequence as set forth in SEQ ID NO: 1, or a fragment thereof), when compared and aligned for maximum correspondence over the full length of the reference sequence as measured using a BLAST or BLAST 2.0 sequence comparison algorithms with default parameters, or by manual alignment and visual inspection (see, e.g., NCBI web site). By "surface-exposed amino acid residue" or "surface-exposed" is meant an amino acid residue that is present on the exterior face of the folded and conformationally-correct tertiary structure of a HSA polypeptide. Such residues can be substituted with e.g., other, chemically- reactive, amino acids (e.g., cysteine) to allow for site-specific conjugation of diagnostic or therapeutic agents. Additionally, surface-exposed amino acid residues can be substituted to allow (e.g., by addition of serine, threonine, or asparagine residues, or glycosylation motifs) or prevent (e.g., by removal of serine, threonine, or asparagine residues, or glycosylation motifs) glycosylation. Surface-exposed amino acid residues include, but are not limited to, threonine at position 496, serine at position 58, threonine at position 76, threonine at position 79, threonine at position 83, threonine at position 125, threonine at position 236, serine at position 270, serine at position 273, serine at position 304, serine at position 435, threonine at position 478, threonine at position 506, and threonine at position 508 (amino acid numbering is relative to e.g., the sequence of the HSA linker set forth in SEQ ID NO: 1). Other surface -exposed residues can be identified by the skilled artisan using the HSA crystal structure (Sugio et al, "Crystal structure of human serum albumin at 2.5 A resolution," Protein Eng. 12:439-446 (1999)).
A "target molecule" or "target cell" is meant a molecule (e.g., a protein, epitope, antigen, receptor, or ligand) or cell to which a binding moiety (e.g., an antibody), or an HSA conjugate that contains one or more binding moieties (e.g., an HSA linker bonded to one or more antibodies or antibody fragments) can specifically bind. A target molecule can be present on the exterior of a target cell (e.g., a cell-surface or secreted protein) or in the interior of a target cell.
By "treating" is meant the reduction (e.g., by at least 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, or even 100%) in the progression or severity of a human disease or disorder (e.g., an autoimmune or proliferative disease), or in the progression, severity, or frequency of one or more symptoms of the human disease or disorder in a human patient.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1 is an illustration showing the schematic representation of an exemplary HSA linker conjugate. The connector between the amino terminal binding moiety and the USA linker has a sequence of alanine, alanine and serine. The connector between the HSA linker and the carboxy terminal binding moiety has a sequence of alanine, alanine, alanine, leucine (SEQ ID NO:5). Figure 2 is a graph showing that B2B3 variants inhibit HRG-induced pErbB3 in ZR75-1 breast cancer cells.
Figures 3A-D arc graphs showing the inhibition of phosphorylated ErbB3 in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 (Figure 3A), H3-HSA-B 1D2 (Figure 3B), H3-HSA-F5B6H2 (Figure 3C), and F4-HSA-F5B6H2 (Figure 3D).
Figures 4A-D are graphs showing the inhibition of phosphorylated AKT in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 (Figure 4A), H3-HSA-B 1D2 (Figure 4B), H3-HSA-F5B6H2 (Figure 4C), and F4-HSA-F5B6H2 (Figure 4D).
Figures 5A-D are graphs showing that inhibition of phosphorylated ERK in BT474 breast cancer cells following 24 hour pre-treatment with the B2B3 variants A5-HSA-B1D2 (Figure 5A), H3-HSA-B 1D2 (Figure 5B), H3-HSA-F5B6H2 (Figure 5C), and F4-HSA-F5B6H2 (Figure 5D).
Figure 6 is a graph showing that treatment of BT474 breast cancer cells with B2B3-1 variants causes Gl arrest and a decrease in the number of cells in S phase.
Figure 7 is a flow cytometry histogram showing that pre-incubation of BT-474-M3 cells with 1 μM B2B3-1 substantially blocks binding of HRG.
Figures 8A-D are graphs showing that B2B3-1 inhibits ErbB3 and AKT phosphorylation in B-T474-M3 and ZR75-30 cell lines. Breast cancer cell lines BT-474-M3 (Figures 8A and 8C) and ZR75-3 0 (Figures 8B and 8D) were pre-treated with a dose titration of B2B3-1 for 24 hours and then stimulated for 10 minutes with 5 nM of HRG lβ EGF domain. The phosphorylation status of ErbB3 and AKT was then examined using an ELISA assay.
Figure 9 is a photograph of a Western blot that shows the effect of B2B3-1 treatment on signaling proteins in BT474 breast cancer cells.
Figure 10 is a photograph of a Western blot that shows the immunoprecipitation of B2B3-1 treated BT474 breast cancer cells. Figures 11A-C are graphs showing B2B3-1 treatment of BT-474 cell line causes Gl arrest and a decrease in the population of cells in S phase (Figure 1 IA), and inhibits colony formation in both BT-474 and SKBr3 cells compared to untreated cells (Figure 1 IB). In addition, B2B3-1 inhibits proliferation of BT-474-M3 cells in a cell impedance assay (Figure HC).
Figure 12 is a graph showing that B2B3-1 does not stimulate ErbB3 phosphorylation in ZR75-1 cells. Figures 13A-B are graphs showing that D2B3-1 binds specifically to ErbB3 (Figure 13A) and ErbB2 (Figure 13B).
Figure 14 is a graph showing that avidity binding of B2B3-1 to MALME-3 cells results in a significant increase in apparent binding affinity compared to ErbB2-only binding variant, SKO-3, and ErbB3-only binding variant, SKO-2.
Figures 15A-C are graphs showing the stability of B2B3-1 in mouse, Cynomolgus monkey, and human serum. 100 nM B2B3-1 was incubated in mouse (Figure 15A), Cynomolgus monkey (Figure 15B), or human (Figure 15C) serum at 37°C for a period of 120 hours. Samples were removed at 0, 24, 48, 72, 96 and 120 hours and the ability of B2B3-1 to bind both ErbB2 and ErbB3 was measured by ELISA (RLU - relative light units).
Figures 16 is a graph showing B2B3-1 dose response in a BT-474-M3 breast cancer xenograft model. The relationship of B2B3-1 dose on tumor response was assessed in the BT-474- M3 breast tumor line at the doses indicated. HSA was given at 52.5 mg/kg, which is an equimolar dose to the 90 mg/kg B2B3-1 dose. Figures 17A-E are graphs showing that B2B3-1 is effective in multiple xenograft models in an ErbB2 dependent manner. Calu-3 (human lung adenocarcinoma; Figure 17Λ), SKOV-3 (human ovarian adenocarcinoma; Figure 17B), NCI-N87 (human gastric carcinoma; Figure 17C), ACFIN (human kidney adenocarcinoma; Figure 17D), and MDΛ-MB-361 (human breast adenocarcinoma; Figure 17E) xenograft model are shown. Mice were treated with 30 mg/kg of B2B3-1 every 3 days or HAS control at an equimolar dose to B2B3-1.
Figures 18A-B are graphs showing that the over-expression of ErbB2 converts B2B3-1 non- responder ADRr breast cancer xenograft model into a responder. ErbB2 was over-expressed in wild type ADRr xenografts (Figure 18A) and ADRr-E2 xenografts (Figure 18B) using a retroviral expression system. Figures 19A-B are graphs showing that B2B3-1 activity correlates positively with ErbB2 expression levels in vitro (Figure 19A) and in vivo (Figure 19B).
Figure 20A-B show that B2B3-1 treatment modifies tumor cell cycling. Figure 2OA includes fluorescent micrographs showing that B2B3-1 treatment of BT474-M3 breast tumor cells for 6 hours results in translocation of cell cycle inhibitor p27kφl to the nucleus. Hoechst stain was used to identify the nucleus. Figure 2OB is a Western blot of BT-474-M3 cells treated with B2B3-1 for 72 hours, which resulted in a decrease in the levels of the cell cycle regulator Cyclin Dl. The cytoskeleton protein vinculin was probed as a protein loading control in this experiment.
Figures 21A-B are micrographs showing that B2B3-1 treatment of BT474 breast tumor xenografts results in translocation of p27kipl to the nucleus. BT474 breast tumor xenografts were treated with B2B3-1 (Figure 21A) at a dose of 30 mg/kg or an equimolar dose of HSA (Figure 21B) every 3 days for a total of 4 doses and stained for p27kφl.
Figure 22A-B are fluorescent micrographs showing that B2B3-1 treatment results in a reduction of the proliferation marker Ki67 in BT474-M3 breast cancer xenograft. BT474-M3 breast tumor xenografts were treated with B2B3-1 (Figure 22A) at a dose of 30 mg/kg or an equimolar dose of HSA (Figure 22B) every 3 days for a total of 4 doses.
Figures 23A-B are fluorescent micrographs showing that B2B3-1 treatment results in a reduction of vessel density in BT474-M3 breast cancer xenograft tumors (as determined by a reduction in CD31 staining). BT474-M3 breast tumor xenografts were treated with B2B3-1 (Figure 23A) at a dose of 30 mg/kg or an equimolar dose of HSA (Figure 23B) every 3 days for a total of 4 doses.
Figures 24A-B are graphs showing that B2B3-1 inhibits phosphorylation of ErbB3 in vivo. Lysates from individual BT-474-M3 xenograft tumors treated with B2B3-1 (M1-M5) or control HSA (H1-H2) were subjected to SDS-PAGE and probed for pErbB3 and beta tubulin using Western blot analysis (Figure 24A). Normalization of the mean pErbB3 signal to the mean beta tubulin signal demonstrated that B2B3-1 treated tumors contained significantly less pErbB3 than HSA tumors (Figure 24B).
Figures 25A and B are graphs showing the in vivo activity of B2B3-1 in BT-474-M3 xenografts which have reduced PTEN activity. Cultured BT-474-M3 tumor cells were transfected with a control vector (Figure 25A) or with a retroviral vector encoding shPTEN (Figure 25B), which knocks out PTEN activity. BT-474-M3 breast cancer cells engineered to knock out PTEN activity were injected into the right flank of mice, while cells transfected with control vector were injected into the left flank of the same mouse. Mice were treated with 30mg/kg B2B3-1 every 3 days or 10mg/kg Herceptin every week and HSA was injected as a control at an equimolar dose to B2B3-1 . B2B3-1 and Herceptin promoted a reduction in the size of tumors formed by control BT-474-M3 breast cancer cells (Figure 25A), whereas only B2B3-1 (and not Hcrceptin) promoted a reduction in the size of tumors formed by BT-474-M3 breast cancer cells lacking expression of PTEN (Figure 25B).
Figures 26A-B show that B2B3-1 inhibits phosphorylation of AKT in BT-474-M3 xenografts that have reduced PTEN activity. Tumors were lysed following the completion of treatment (q3dxl 1) and tested for PTEN, pErbB3, and pAKT expression levels by Western blot analysis (Figure 26A). Densitometry on the band intensity for pAKT normalized to total AKT and total protein demonstrate that B2B3-1 was able to inhibit phosphorylation of this protein, when FIerceptin did not (Figure 26B).
Figures 27 A-D are graphs showing the single dose pharmacokinetic properties of 5 (Figure 27A), 15 (Figure 27B), 30 (Figure 27C), and 45 (Figure 27D) mg/kg bolus dose of B2B3-1 in nu/nu mice. B2B3-1 serum concentrations are comparable measured by the HSA assay or ErbB2/ErbB3 assay, indicating that the antigen binding activity of B2B3-1 is retained in circulation.
Figure 28 is a graph showing the dose-exposure relationship for 5, J 5, 30, and 45 mg/kg bolus doses of B2B3-1 in nude mice. Increases in dose result in a linear increase in overall exposure to B2B3-1.
Figure 29 is a graph showing the B2B3-1 serum concentrations measured in Cynomolgus monkeys dosed every three days for 4 doses with 4 mg/kg (n~2), 20 mg/kg (n=2) and 200 mg/kg (up to 336 hour n=4, for 384, 552 and 672 hour time points n=2). Figure 30 is an illustration of the B2B3-1 expression plasmid pMPl 0k4H3-mIISA-B 1D2.
Figure 31 is an illustration of the neomycin resistance plasmid pSV2-neo.
Figure 32 is an illustration of the hygromycin resistance plasmid pTK-IIyg.
DETAILED DESCRIPTION OF THE INVENTION This invention provides a human serum albumin (HSA) linker which, when used to produce an agent of the invention (e.g., a binding, diagnostic, or therapeutic agent) exhibits, for example, an increased in vivo half-life of between 6 hours and 7 days and which does not induce significant humoral or cell-mediated immune responses when administered in vivo to a mammal (e.g., a human). In one aspect, the invention provides a mutated HSA linker that has two defined amino acid substitutions (i.e., the "C34S" and "N503Q" substitutions, as set forth in SEQ ID NO:1). In another aspect, the invention provides an HSA linker bonded to one or more binding moieties (e.g., antibodies, antibody fragments, receptor/ligands, or small molecules) for diagnostic or therapeutic applications in a mammal (e.g., a human) in vivo or for use in vitro in connection with mammalian cells, tissues, or organs. In a further aspect, the HSA linker may be coupled to one or more immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents for diagnostic or therapeutic applications in a mammal (or in connection with a mammalian cell, tissue, or organ). An agent of the invention, which includes the HSA linker, can be optionally combined with one or more pharmaceutically acceptable carriers or excipients and can be formulated to be administered intravenously, intramuscularly, orally, by inhalation, parenterally, intraperitoneally, intraarterially, transdermally, sublingually, nasally, through use of suppositories, transbuccally, liposomally, adiposally, opthalmically, intraocularly, subcutaneously, intrathecal Iy, topically, or locally. An agent of the invention which includes the HSA linker can be combined or coadministered with one or more biologically-active agents (e.g., biological or chemical agents, such as chemotherapeutics and antineoplastic agents). In a further aspect, the invention provides a kit, with instructions, for the conjugation of binding moieties (e.g., antibodies, antibody fragments, receptors or ligands), immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents to the HSA linker of the invention to prepare agents of the invention that can be used for diagnostic or therapeutic applications.
A Mutated Human Serum Albumin (HSA) Linker A mutated HSA linker of the invention contains two amino acid mutations, at positions 34 and 503, relative to the wild-type HSA amino acid sequence set forth in SEQ ID NO:3. The cysteine residue at position 34 (i.e., C34) can be mutated to any amino acid residue other than cysteine (e.g., serine, threonine, or alanine). Likewise, the asparagine residue at position 503 (i.e., N503) can be mutated to any amino acid residue other than asparagine (e.g., glutamine, serine, histidine, or alanine). In one embodiment, the HSA linker of the invention has the the amino acid and corresponding nucleotide sequence set forth in SEQ ID NOS :1 and 2, respectively. This mutated HSA linker of the invention contains two amino acid substitutions (i.e., serine for cysteine at amino acid residue 34 ("C34S") and glutamine for asparagine at amino acid residue 503 ("N503Q")). The HSA linker, when bonded to one or more binding moieties (e.g., antibodies, antibody fragments (e.g., single chain antibodies), or other targeting or biologically active agents (e.g., receptors and ligands)), confers several beneficial pharmacologic properties to those conjugates and to additional diagnostic or therapeutic agents also conjoined (e.g., immunomodulatory agents, cytotoxic or cytostatic agents, detectable labels, or radioactive agents)) relative to the pharmacologic properties of these agents in the absence of the HSA linker of the invention. These benefits can include decreased immunogenicity (e.g., decreased host antibody neutralization of linker-antibody conjugates), increased detection of HSA linker conjugates (e.g., by mass spectroscopy) and increased pharmacologic half-life (e.g., a half-life greater than 6 hours, 8 hours, 12 hours, 24 hours, 36 hours, 2 days, 3 days, 4 days, 5 days, 6 days, or 7 days) when administered to a mammal (e.g., a human). Specifically, the substitution of serine for cysteine at amino acid residue 34 results in reduced oxidation and protein heterogeneity of the HSA linker. In wild-type HSA, the asparagine at amino acid residue 503 is sensitive to deamination, likely resulting in reduced pharmacologic half-life. The substitution of glutamine for asparagine at amino acid residue 503 can result in increased pharmacologic half-life of the HSA linker of the invention, and correspondingly, of conjugate agents that include the HSA linker when administered to a mammal (e.g., a human) or cells, tissues, or organs thereof. In other embodiments, the mutated HSA linker of the invention includes domain I of HSA
(SEQ ID NO:53; residues 1-197 of SEQ ID NO:1), domain III of HSA (SEQ ID NO:55; residues 381-585 of SEQ ID NO: 1), combination of domains I and III of HSA, or a combination of domain I or III of HSA with domain II of HSA (SEQ ID NO:54; residues 189-385 of SEQ ID NO:1). For example, an HSA linker of the invention can include domains I and II, I and 111, or 11 and III. In addition, the cysteine residue at position 34 (i.e., C34) of domain I (SEQ ID NO:53) can be mutated to any amino acid residue other than cysteine (e.g., serine, threonine, or alanine). Likewise, the asparagine residue at position 503 (i.e., N503) of domain III (SEQ ID NO:55) can be mutated to any amino acid residue other than asparagine (e.g., glutamine, serine, histidine, or alanine). These HSA linkers can be incorporated into an HSA linker conjugate of the invention, which includes one or more of a polypeptide connector, a binding moiety, and therapeutic or diagnostic agents, each of which is described in detail below.
Polypeptide Connectors
To facilitate the conjugation of binding moieties, as defined herein, to the HSA linker of the invention, short (e.g., 2-20 amino acids in length) polypeptide connectors that can be bonded (e.g, covalently (e.g., a peptidic bond), ionically, or hydrophobically bonded, or via a high-affinity protein-protein binding interaction (e.g., biotin and avidin)) to the amino or carboxy termini of an HSA linker. These connectors provide flexible tethers to which any of the binding moieties described herein can be attached. A polypeptide connector may be 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more amino acids in length. In one embodiment, the connector is a sequence of, e.g., glycine, alanine, serine, glutamine, leucine, or valine residues. Although not specifically enumerated herein, the connector of the invention can be solely glycine, alanine, serine, glutamine, leucine, or valine residues, or it may be any combination of these residues up to about 20 amino acids in length. In a preferred embodiment, the connector attached to the amino terminus of an HSA linker has the amino acid sequence "AAS" or "AAQ" and the connector attached to the carboxy terminus has the amino acid sequence "AAAL" (SEQ ID NO:5). The connector can be covalently bound to the amino or carboxy terminal residue of the HSA linker, to an amino acid residue within the HSA linker, or can be included between one or more binding moieties, if present.
HSA Linker Manufacture The HSA linker of the invention, which may optionally include the peptide connectors described above, one or more of the binding moieties described below, polypeptide-based detectable labels, and other polypeptide-based therapeutic agents, can be produced recombinantly. For example, a nucleotide sequence encoding the HSA linker (and one or more of the optional elements) may be expressed (e.g., in a plasmid, viral vector, or transgenically) in a bacterial (e.g., E. coli), insect, yeast, or mammalian cell (e.g., a CHO cell), or a mammalian tissue, organ, or organism (e.g., a transgenic rodent, ungulate (e.g., a goat), or non-human primate). After expression of the HSA linker in the host cell, tissue, or organ, the skilled artisan may isolate and purify the HSA linker using standard protein purification methods (e.g., FPLC or affinity chromatography). A recombinant expression system for the production of an USA linker in combination with two binding moieties is illustrated in Figure 1.
The HSA linker of the invention, which may include one or more of the optional elements described above, can be synthetically produced. For example, the HSA linker can be prepared by techniques generally established in the art of peptide synthesis, such as the solid-phase approach. Solid-phase synthesis involves the stepwise addition of amino acid residues to a growing peptide chain that is linked to an insoluble support or matrix, such as polystyrene. The C-terminus residue of the peptide is first anchored to a commercially available support with its amino group protected with an N-protecting agent such as a t-butyloxycarbonyl group (tBoc) or a fluorenylmethoxycarbonyl (FMOC) group. The amino-protecting group is removed with suitable deprotecting agents such as TFA in the case of tBOC or piperidine for FMOC and the next amino acid residue (in N-protected form) is added with a coupling agent such as dicyclocarbodiimide (DCC). Upon formation of a peptide bond, the reagents are washed from the support. After addition of the final residue, the agent is cleaved from the support with a suitable reagent, such as trifluoroacetic acid (TFA) or hydrogen fluoride (HF). If desired, the HSA linker, which may include one or more of the optional elements described above, can be manufactured in one, two, three, or more segments, which can then be ligated to form the whole HSA linker construct.
HSA Linker Binding Moieties
The HSA linker of the invention can also be prepared as a construct that includes one or more binding moieties, such as antibodies, antibody fragments (as defined herein, e.g., a single chain Fv (scFv)) or receptor/ligands (i.e., protein or glycoprotein ligands or receptors) that allow selective and specific binding of the HSA linker construct to a target cell, tissue, or organ. The binding moieties can be bonded to the HSA linker (e.g., via a covalent (e.g., a peptide bond), ionic, or hydrophobic bond, or via a high-affinity protein-protein binding interaction (e.g., biotin and avidin)). As is discussed above, an HSA linker of the invention that includes one or more polypeptide connectors or binding moieties can be recombinantly or synthetically produced. One or more binding moieties can be bonded to an HSA linker of the invention. In one embodiment, two or more identical binding moieties (i.e., moieties having the same structure and binding affinities) are bonded to an HSA linker, one or more (e.g., in tandem) each at the amino and carboxy termini, the HSA linker thereby affording improved avidity of the binding moieties for their target antigen. Alternatively, two or more different binding moieties (e.g., an antibody, such as a scFv, with binding affinities for two or more different target molecules, or scFv with binding affinities for two or more different epitopes on the same target molecule) can be bonded to an USA linker (e.g., a bispecific HSA linker conjugate) to allow multiple target antigens or epitopes to be bound by the HSA linker conjugate. In another embodiment, different species of binding moieties can also be bonded to an HSA linker to bestow, for example, two or more different binding specificities or agonistic/antagonistic biological properties on the linker conjugate. Useful combinations of binding moiety pairs for use in the preparation of bispecific HSA linker conjugates are disclosed in, e.g., International Patent Application Publications WO 2006/091209 and WO 2005/117973, herein incorporated by reference. In other embodiments, more than two binding moieties (e.g., the same or different binding moieties) can be bonded to an HSA linker to form an agent of the invention. The invention features an agent having at least first and second binding moieties, each of which can be bound at either the amino or carboxy terminus of the HSA linker protein, or to polypeptide connectors, as defined herein, present at either or both termini. Figure 1 illustrates an exemplary mutated HSA linker of the invention in which two binding moieties ("arm 1" and "arm 2") are bonded to the mutated HSA linker by the amino terminal polypeptide connector AAS and carboxy terminal polypeptide connector AAAL (SEQ ID NO:5). Binding moieties (e.g., an antibody or scFv) can also be bound to other loci (e.g., internal amino acid residues of the HSA linker), for example, covalently or ionically, e.g., using biotin-avidin interactions. Biotinylation of amine (e.g., lysine residues) and sulfhydryl (e.g., cysteine residues) amino acid side chains is known in the art and can be used to attach binding moieties to the HSA linker. Binding moieties that can be included in an HSA linker conjugate of the invention include antibodies, antibody fragments, receptors, and ligands. Binding moieties bound to an HSA linker of the invention may be recombinant (e.g., human, murine, chimeric, or humanized), synthetic, or natural. The invention features complete antibodies, domain antibodies, diabodies, bi-specific antibodies, antibody fragments, Fab fragments, F(ab')2 molecules, single chain Fv (scFv) molecules, tandem scFv molecules, antibody fusion proteins, and aptamers.
Antibodies
Antibodies of the invention include the IgG, IgA, IgM, IgD, and IgE isotypes. Antibodies or antibody fragments of the invention, as used herein, contain one or more complementarity determining regions (CDR) or binding peptides that bind to target proteins, glycoproteins, or epitopes present on the exterior or in the interior of target cells.
Many of the antibodies, or fragments thereof, described herein can undergo non-critical amino-acid substitutions, additions or deletions in both the variable and constant regions without loss of binding specificity or effector functions, or intolerable reduction of binding affinity (e.g., below about 10" M). Usually, an antibody or antibody fragment incorporating such alterations exhibits substantial sequence identity to a reference antibody or antibody fragment from which it is derived. Occasionally, a mutated antibody or antibody fragment can be selected having the same specificity and increased affinity compared with a reference antibody or antibody fragment from which it was derived. Phage-display technology offers powerful techniques for selecting such antibodies. See, e.g., Dower et al, WO 91/17271 McCafferty et al, WO 92/01047; and Huse, WO 92/06204, incorporated by reference herein.
The HSA linker of the invention can also be bonded to one or more fragments of an antibody that retain the ability to bind with specificity to a target antigen. Antibody fragments include separate variable heavy chains, variable light chains, Fab, Fab', F(ab')2, Fabc, and scFv. Fragments can be produced by enzymatic or chemical separation of intact immunoglobulins. For example, a F(ab') 2 fragment can be obtained from an IgG molecule by proteolytic digestion with pepsin at pH 3.0-3.5 using standard methods such as those described in Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Pubs., N. Y. (1988). Fab fragments may be obtained from F(ab') 2 fragments by limited reduction, or from whole antibody by digestion with papain in the presence of reducing agents. Fragments can also be produced by recombinant DNA techniques. Segments of nucleic acids encoding selected fragments are produced by digestion of full-length coding sequences with restriction enzymes, or by de novo synthesis. Often fragments are expressed in the form of phage-coat fusion proteins. This manner of expression is advantageous for affinity- sharpening of antibodies.
Humanized Antibodies
The invention further provides for humanized antibodies in combination with the HSA linker of the invention, in which one or more of the antibody CDRs arc derived from a non-human antibody sequence, and one or more, but preferably all, of the CDRs bind specifically to an antigen (e.g., a protein, glycoprotein, or other suitable epitope). A humanized antibody contains constant framework regions derived substantially from a human antibody (termed an acceptor antibody), as well as, in some instances, a majority of the variable region derived from a human antibody. One or more of the CDRs (all or a portion thereof, as well as discreet amino acids surrounding one or more of the CDRs) are provided from a non- human antibody, such as a mouse antibody. The constant region(s) of the antibody, may or may not be present. The substitution of one or more mouse CDRs into a human variable domain framework is most likely to result in retention of their correct spatial orientation if the human variable domain framework adopts the same or a similar conformation as the mouse variable framework from which the CDRs originated. This is achieved by obtaining the human variable domains from human antibodies whose framework sequences exhibit a high degree of sequence and structural identity with the murine variable framework domains from which the CDRs were derived. The heavy and light chain variable framework regions can be derived from the same or different human antibody sequences. The human antibody sequences can be the sequences of naturally occurring human antibodies, consensus sequences of several human antibodies, or can be human germline variable domain sequences. See, e.g., Kettleborough et at, Protein Engineering 4:113 (1991); Kolbinger et al, Protein Engineering 6:971 (1993).
Suitable human antibody sequences are identified by alignments of the amino acid sequences of the mouse variable regions with the sequences of known human antibodies. The comparison is performed separately for heavy and light chains but the principles are similar for each. Methods of preparing chimeric and humanized antibodies and antibody fragments are described in, e.g., U.S. Patent Nos. 4,816,567, 5,530,101, 5,622,701, 5,800,815, 5,874,540, 5,914,1 10, 5,928,904, 6,210,670, 6,677,436, and 7,067,313 and U.S. Patent Application Nos. 2002/0031508, 2004/0265311 , and 2005/0226876. Preparation of antibody or fragments thereof is further described in, e.g., U.S. Patent Nos. 6,331,415, 6,818,216, and 7,067,313.
Receptors and Ligands
The invention provides for protein or glycoprotein receptors or ligands bound to an HSA linker of the invention. HSA linkers bonded with a receptor or ligand can be used, for example, to specifically target a secreted protein, a cell (e.g., a cancer cell), tissue, or organ. Furthermore, the specific binding of the HSA linker-receptor or ligand conjugate to cognate target receptors or ligands can cause agonistic or antagonistic biological activity in intracellular or intercellular signaling pathways. As with the other binding moieties described herein, receptors and ligands, or fragments thereof, can be conjoined to the amino and/or carboxy termini of an HSA linker of the invention, or to an amino acid residue within the HSA linker. Exemplary receptors and ligands that can be joined to an HSA linker of the invention include, but are not limited to, insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, α4 integrin, P-selectin, sphingosine-1 -phosphate receptor- 1 (SlPR), hyaluronate receptor, leukocyte function antigen- 1 (LFA-I), CD4, CDI l, CDl 8, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD106 (vascular cell adhesion molecule 1 (VCAMl), CD 166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-relatied apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL 12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, receptors alpha and beta, MART-I, gplOO, MAGE-I, ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I, epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA 125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and biologically-active fragments thereof.
Receptors and ligands can be expressed, isolated, or joined to an HSA linker of the invention using any of the methods described supra relating to antibodies or antibody fragments.
Diagnostic Agents
The HSA linker of the invention, or any binding moiety conjugated thereto (e.g., antibody, antibody fragment, receptor, or ligand), can be coupled to a chelating agent or to a detectable label to form a diagnostic agent of the invention. Also contemplated are HSA linker conjugates that include a detectable label, as described herein, as well as one or more of the therapeutic agents or binding moieties described herein.
The HSA linker and chelator components can be coupled to form a conjugate by reacting the free amino group of a threonine residue of the USA linker with an appropriate functional group of the chelator, such as a carboxyl group or activated ester. For example, a conjugate may be formed by incorporating the chelator ethylenediaminetetraacetic acid (EDTA), which is common in the art of coordination chemistry, when functional ized with a carboxyl substituent on the ethylene chain. Synthesis of EDTA derivatives of this type are reported in Arya et al. (Bioconjugate Chemistry 2:323 (1991)), which describes blocking each of the four coordinating carboxyl groups with a t-butyl group while the carboxyl substituent on the ethylene chain is free to react with the amino group of a peptide portion of the agent of the invention, thereby forming a conjugate. An HSA linker or an HSA linker conjugate may incorporate a metal chelator component that is peptidic, i.e., compatible with solid-phase peptide synthesis. In this case, the chelator may be coupled to the HSA linker of the invention in the same manner as EDTA described above or, more conveniently, the chelator and HSA linker or HSA linker conjugate of the invention are synthesized in ϊoto starting from the C-terminal residue of the HSA linker or HSA linker conjugate and ending with the N-terminal residue of the chelator.
An HSA linker or an HSA linker conjugate may further incorporate a linking group component that serves to couple the HSA linker of the invention to the chelator while not adversely affecting the biological properties of the HSA linker, the targeting function of the binding moiety portion(s) of the HSA linker conjugate, or the metal binding function of the chelator. Suitable linking groups include amino acid chains and alkyl chains functional ized with reactive groups for coupling to the HSA linker or the HSA linker conjugate and to the chelator. An amino acid chain is the preferred linking group when the chelator is peptidic so that the HSA linker or HSA linker conjugate can be synthesized in toto by solid-phase techniques. An alkyl chain-linking group may be incorporated in the HSA linker or HSA linker conjugate by reacting the amino group of a threonine residue of a peptide portion of an HSA linker of the invention with a first functional group on the alkyl chain, such as a carboxyl group or an activated ester. Subsequently the chelator is attached to the alkyl chain to complete the formation of the HSA linker or HSA linker conjugate by reacting a second functional group on the alkyl chain with an appropriate group on the chelator. The second functional group on the alkyl chain is selected from substituents that are reactive with a functional group on the chelator while not being reactive with a threonine residue of the mutated HSA linker protein. For example, when the chelator incorporates a functional group such as a carboxyl group or an activated ester, the second functional group of the alkyl chain-linking group can be an amino group. It will be appreciated that formation of the HSA linker or HSA linker conjugate may require protection and deprotection of the functional groups present in order to avoid formation of undesired products. Protection and deprotection are accomplished using protecting groups, reagents, and protocols common in the art of organic synthesis. Particularly, protection and deprotection techniques employed in solid phase peptide synthesis described above may be used.
An alternative chemical linking group to an alkyl chain is polyethylene glycol (PEG), which is functionalized in the same manner as the alkyl chain described above for incorporation in the HSA linker or HSA linker conjugate. It will be appreciated that linking groups may alternatively be coupled first to the chelator and then to the HSA linker or HSA linker conjugate of the invention.
In accordance with one aspect of the invention, HSA linker-chelator conjugates of the invention incorporate a diagnostically useful metal capable of forming a complex. Suitable metals include, e.g., radionuclides, such as technetium and rhenium in their various forms (e.g., ""'TcO3+, " mTcO2 H , ReO3+, and ReO2 +). Incorporation of the metal within the HSA linker or HSA linker conjugate can be achieved by various methods common in the art of coordination chemistry. When the metal is technetium-99 m, the following general procedure may be used to form a technetium complex. An HSA linker-chelator conjugate solution is formed initially by dissolving the HSA linker or HSA linker conjugate in aqueous alcohol such as cthanol. The solution is then degassed to remove oxygen then thiol protecting groups are removed with a suitable reagent, for example, with sodium hydroxide, and then neutralized with an organic acid, such as acetic acid (pTI 6.0-6.5). In the labeling step, a stoichiometric excess of sodium pertechnetate, obtained from a molybdenum generator, is added to a solution of the conjugate with an amount of a reducing agent such as stannous chloride sufficient to reduce technetium and heated. The labeled HSA linker or HSA linker conjugate may be separated from contaminants 99 mTcθ4 ~ and colloidal " '"TcO2 chromatographically, for example, with a C-18 Sep Pak cartridge.
In an alternative method, labeling of an USA linker of the invention can be accomplished by a transchelation reaction. The technetium source is a solution of technetium complexed with labile ligands facilitating ligand exchange with the selected chelator. Suitable ligands for transchelation include tartarate, citrate, and heptagluconate. In this instance the preferred reducing reagent is sodium dithionite. It will be appreciated that the HSA linker or HSA linker conjugate may be labeled using the techniques described above, or alternatively the chelator itself may be labeled and subsequently coupled to an HSA linker protein of the invention to form an HSA linker-chelator conjugate; a process referred to as the "prelabeled ligand" method. Another approach for labeling an HSA linker of the invention, or any agent conjugated thereto, involves immobilizing the HSA linker-chelator conjugate on a solid-phase support through a linkage that is cleaved upon metal chelation. This is achieved when the chelator is coupled to a functional group of the support by one of the complexing atoms. Preferably, a complexing sulfur atom is coupled to the support which is functional ized with a sulfur protecting group such as maleimide. When labeled with a diagnostically useful metal, an agent of the invention that includes an
HSA linker-chelator conjugate can be used to detect tissue at risk of developing cancer (e.g., lung cancer, breast cancer, colon cancer, and prostate cancer), age-related diseases (e.g., cardiovascular disease, cerebrovascular disease, or Alzheimer's disease), tobacco-related diseases (e.g., emphysema, aortic aneurysms, esophageal cancer, or squamous cell cancer of the head and neck) by procedures established in the art of diagnostic imaging. An agent of the invention that incorporates an HSA linker labeled with a radionuclide metal, such as technetium-99 m, may be administered to a mammal (e.g., a human) by intravenous injection in a pharmaceutically acceptable solution, such as isotonic saline, or by other methods described herein. The amount of a labeled agent of the invention appropriate for administration is dependent upon the distribution profile of the chosen HSA linker or HSA linker conjugate in the sense that an agent of the invention that incorporates a rapidly cleared HSA linker or HSA linker conjugate may be administered at higher doses than an agent that incorporates an HSA linker or HSA linker conjugate that clears less rapidly. Unit doses acceptable for imaging tissues are in the range of about 5-40 mCi for a 70 kg individual. The in vivo distribution and localization of an agent of the invention that incorporates a labeled HSA linker or HSA linker conjugate can be tracked by standard techniques described herein at an appropriate time subsequent to administration, typically between 30 minutes and 180 minutes and up to about 5 days depending upon the rate of accumulation at the target site with respect to the rate of clearance at non- target tissue.
An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be modified or labeled to facilitate diagnostic or therapeutic uses. Detectable labels such as a radioactive, fluorescent, heavy metal, or other molecules may be bound to any of the agents of the invention. Single, dual, or multiple labeling of an agent may be advantageous. For example, dual labeling with radioactive iodination of one or more residues combined with the additional coupling of, for example, 90Y via a chelating group to amine-containing side or reactive groups, would allow combination labeling. This may be useful for specialized diagnostic needs such as identification of widely dispersed small neoplastic cell masses. An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be modified, for example, by halogenation of the tyrosine residues of the peptide component. Halogens include fluorine, chlorine, bromine, iodine, and astatine. Such halogenated agents may be detectably labeled, e.g., if the halogen is a radioisotope, such as, for example, 18F, 75Br, 77Br, 1221, 123I, 1241, 125I, 129I, 131I, or 211At. Halogenated agents of the invention contain a halogen covalently bound to at least one amino acid, and preferably to D-Tyr residues in each agent molecule. Other suitable detectable modifications include binding of other compounds (e.g., a fluorochrome such as fluorescein) to a lysine residue of the agent of the invention, or analog, particularly an agent or analog having a linker including lysines. Radioisotopes for radiolabeling an HSA linker of the invention, or any molecule or moiety conjugated thereto, include any radioisotope that can be covalently bound to a residue of the peptide component of the agent of the invention or analog thereof. The radioisotopes can also be selected from radioisotopes that emit either beta or gamma radiation, or alternatively, any of the agents of the invention can be modified to contain chelating groups that, for example, can be covalently bonded to lysine residue(s) of the HSA linker or any peptidic agent conjugated thereto. The chelating groups can then be modified to contain any of a variety of radioisotopes, such as gallium, indium, technetium, ytterbium, rhenium, or thallium (e.g., 1251, 67Ga, 11 1In, "mTc, 169Yb, 186Re).
An HSA linker of the invention, or any molecule or moiety conjugated thereto, can be modified by attachment of a radioisotope. Preferable radioisotopes are those having a radioactive half-life corresponding to, or longer than, the biological half-life of the HSA conjugate used. More preferably, the radioisotope is a radioisotope of a halogen atom (e.g. a radioisotope of fluorine, chlorine, bromine, iodine, and astatine), even more preferably 75Br, 77Br, 76Br, 1221, 123I, 124I, 125I, 129I, 131I5 Or 21 1At.
An agent of the invention that incorporates an HSA linker, or any molecule or moiety conjugated thereto, can be coupled to radioactive metals and used in radiographic imaging or radiotherapy. Preferred radioisotopes also include "111Tc, 51Cr, 67Ga, 68Ga, 11 1In, 168Yb, 140La, 90Y, 88Y, 153Sm, 156Ho, 165Dy, 64Cu, 97Ru, 103Ru, 186Re, 188Re, 203Pb, 21 1Bi, 212Bi, 213Bi, and 214Bi. The choice of metal is determined based on the desired therapeutic or diagnostic application.
An HSA linker of the invention, or any molecule or moiety conjugated thereto, can be coupled to a metal component, to produce agent of the invention that can be used as a diagnostic or therapeutic agent. A detectable label may be a metal ion from heavy elements or rare earth ions, such as Gd +, Fe +, Mn +, or Cr +, An agent of the invention that incorporates an HSA linker having paramagnetic or superparamagnetic metals conjoined thereto are useful as diagnostic agents in MRI imaging applications. Paramagnetic metals that can be coupled to the agents of the invention include, but are not limited to, chromium (III), manganese (II), iron (II), iron (III), cobalt (II), nickel (II), copper (II), praseodymium (III), neodymium (III), samarium (III), gadolinium (III), terbium (III), dysprosium (III), holmium (III), erbium (III), and ytterbium (III).
Chelating groups may be used to indirectly couple detectable labels or other molecules to an HSA linker of the invention or to an agent conjugated thereto. Chelating groups can link agents of the invention with radiolabels, such as a bifunctional stable chelator, or can be linked to one or more terminal or internal amino acid reactive groups. An HSA linker of the invention, or any molecule or moeity conjugated thereto, can be linked via an isothiocyanate β-Ala or appropriate non-α-amino acid linker which prevents Edman degradation. Examples of chelators known in the art include, for example, the ininocarboxylic and polyaminopolycarboxylic reactive groups, ininocarboxylic and polyaminopolycarboxylic reactive groups, diethylenetriaminepentaacetic acid (DTPA), and 1,4,7,10- tetraazacyclododecane-l ,4,7,10-tetraacetic acid (DOTA).
An HSA linker of the invention, when expressed recombinantly, can be joined to a peptidic detectable label or diagnostic agent. Peptides and proteins that can be used as a detectable label with an USA linker include, but are not limited to, fluorescent proteins, bioluminescent proteins, and epitope tags, each of which is discussed in detail below. One or more of these detectable labels can also be incorporated into an HSA linker of the invention that also includes a therapeutic, cytotoxic, or cytostatic agent.
Fluorescent proteins or fluorochromes, such as green fluorescent protein (GFP; SEQ ID NO:47), enhanced GFP (eGFP), yellow fluorescent protein (SEQ ID NO: 48; YFP), cyan fluorescent protein (SEQ ID NO: 49; CFP), and red fluorescent protein (SEQ ID NO: 50; RFP or DsRed), can be used as detectable label joined to an HSA linker of the invention. Fluorescent proteins can be recombinantly expressed in a cell (e.g., a blood cell, such as a lymphocyte) following transfection or transduction of the cell with an expression vector that encodes the nucleotide sequence of the fluorescent protein. Upon exposure of the fluorescent protein to a stimulating frequency of light, the fluorescent protein will emit light at a low, medium, or high intensity that can be observed by eye under a microscope or by an optical imaging device. Exemplary fluorescent proteins suitable for use as the diagnostic sequence in agents of the invention are described in, e.g., U.S. Patent Nos. 7,417,131 and 7,413,874, each of which is herein incorporated by reference.
Bioluminescent proteins can also be used as a detectable label incorporated into an HSA linker of the invention. Bioluminescent proteins, such as Iuciferase (e.g., firefly (SEQ ID NO:51), Renilla (SEQ ID NO:52), and Omphalotus Iuciferase) and aequorin, emit light as part of a chemical reaction with a substrate (e.g., luciferin and coelenterazine). In one embodiment of the invention, a vector encoding a Iuciferase gene provides for the in vivo, in vitro, or ex vivo detection of cells (e.g., blood cells, such as lymphocytes) that have been transduced or transfected according to the methods of the invention. Exemplary bioluminescent proteins suitable for use as diagnostic sequence of the invention and methods for their use are described in, e.g., U.S. Patent Nos. 5,292,658, 5,670,356, 6,171,809, and 7,183,092, each of which is herein incorporated by reference.
Epitope tags are short amino acid sequences, e.g., 5-20 amino acid residues in length, that can be incorporated into an HSΛ linker of the invention as a detectable label to facilitate detection once expressed in a cell, secreted from the cell, or bound to a target cell. An agent of the invention that incorporates an epitope tag as a diagnostic sequence can be detected by virtue of its interaction with an antibody, antibody fragment, or other binding molecule specific for the epitope tag. Nucleotide sequences encoding the epitope tag are produced either by cloning appropriate portions of natural genes or by synthesizing a polynucleotide that encodes the epitope tag. An antibody, antibody fragment, or other binding molecule that binds an epitope tag can directly incorporate a detectable label (e.g., a fluorochrome, radiolabel, heavy metal, or enzyme such as horseradish peroxidase) or serve itself as a target for a secondary antibody, antibody fragment, or other binding molecule that incorporates such a label. Exemplary epitope tags that can be used as a diagnostic sequence include c-myc (SEQ ID NO:33), hemagglutinin (HA; SEQ ID NO:34), and histidine tag (His6; SEQ ID NO:35). Furthermore, fluorescent (e.g., GFP) and bioluminescent proteins can also serve as epitope tags, as antibodies, antibody fragments, and other binding molecules are commercially available for the detection of these proteins.
The in vivo, in vitro, or ex vivo detection, imaging, or tracking of a an HSA linker of the invention that incorporates a diagnostic sequence (e.g., a fluorescent protein, bioluminescent protein, or epitope tag) or any cell expressing or bound thereto can be accomplished using a microscope, flow cytometer, luminometer, or other state of the art optical imaging device, such as an IVIS® Imaging System (Caliper LifeSciences, Hopkinton, MA).
Therapeutic or Cytotoxic Agents Coupled to the HSA Linker of the Invention An HSA linker protein of the invention, or any molecule or moiety conjugated thereto, can be coupled to any known cytotoxic or therapeutic moiety to form an agent of the invention that can be administered to treat, inhibit, reduce, or ameliorate disease (e.g., a cancer, autoimmune disease, or cardiovascular disease) or one or more symptoms of disease. Examples include but are not limited to antineoplastic agents such as: Acivicin; Aclarubicin; Acodazole Hydrochloride; Acronine; Adozelesin; Adriamycin; Aldesleukin; Altretamine; Ambomycin; A. metantrone Acetate;
Aminoglutethimide; Amsacrine; Anastrozole; Anthramycin; Asparaginase; Asperlin; Azacitidine; Azetepa; Azotomycin; Batimastat; Benzodepa; Bicalutamide; Bisantrene Hydrochloride; Bisnafide Dimesylate; Bizelesin; Bleomycin Sulfate; Brequinar Sodium; Bropirimine; Busulfan; Cactinomycin; Calusterone; Camptothecin; Caracemide; Carbetimer; Carboplatin; Carmustine; Carubicin Hydrochloride; Carzelesin; Cedefingol; Chlorambucil; Cirolemycin; Cisplatin; Cladribine; Combretestatin A-4; Crisnatol Mesylate; Cyclophosphamide; Cytarabine; Dacarbazine; DACA (N- [2- (Dimethyl-amino) ethyl] acridine-4-carboxamide); Dactinomycin; Daunorubicin Hydrochloride; Daunomycin; Decitabine; Dexormaplatin; Dezaguanine; Dezaguaninc Mesylate; Diaziquone; Docetaxel; Dolasatins; Doxorubicin; Doxorubicin Hydrochloride; Droloxifene; Droloxifene Citrate; Dromostanolone Propionate; Duazomycin; Edatrexate; Eflornithine Hydrochloride; Ellipticine; Elsamitmcin; Enloplatin; Enpromate; Epipropidine; Epirubicin Hydrochloride; Erbulozole; Esorubicin Hydrochloride; Estramustine; Estramustine Phosphate Sodium; Etanidazole; Ethiodized Oil 1 131; Etoposide; Etoposide Phosphate; Etoprine; Fadrozole Hydrochloride; Fazarabine; Fenrctinidc; Floxuridine; Fludarabine Phosphate; Fluorouracil; 5-FdUMP; Flurocitabine; Fosquidone; Fostriecin Sodium; Gemcitabine; Gemcitabine Hydrochloride; Gold Au 198;
Homocamptothecin; Hydroxyurea; Idarubicin Hydrochloride; Ifosfamide; Ilmofosine; Interferon Alfa-2a; Interferon Alfa-2b; Interferon Alfa-nl; Interferon Alfa-n3; Interferon Beta-I a; Interferon Gamma-I b; Iproplatin; Irinotecan Hydrochloride; Lanreotide Acetate; Letrozole; Leuprolide Acetate; Liarozole Hydrochloride; Lometrexol Sodium; Lomustine; Losoxantrone Hydrochloride; Masoprocol; Maytansine; Mechlorethamine Hydrochloride; Megestrol Acetate; Melengestrol
Acetate; Melphalan; Menogaril; Mercaptopurine; Methotrexate; Methotrexate Sodium; Metoprine; Meturedcpa; Mitindomide; Mitocarcin; Mitocromin; Mitogillin; Mitomalcin; Mitomycin; Mitosper;
Mitotane; Mitoxantrone Hydrochloride; Mycophenolic Acid; Nocodazole; Nogalamycin;Ormaplatin;
Oxisuran; Paclitaxel; Pegaspargase; Peliomycin; Pentamustine; PeploycinSulfate; Perfosfamide;
Pipobroman; Piposulfan; Piroxantrone Hydrochloride; Plicamycin; Plomestane; Porfimer Sodium; Porfiromycin; Prednimustine; Procarbazine Hydrochloride; Puromycin; Puromycin Hydrochloride;
Pyrazofurin; Rhizoxin; Rhizoxin D; Riboprine; Rogletimide; Safingol; Safingol Hydrochloride;
Semustine; Simtrazene; Sparfosate Sodium; Sparsomycin; Spirogermanium Hydrochloride;
Spiromustine; Spiroplatin; Streptonigrin; Streptozocin; Strontium Chloride Sr 89; Sulofenur;
Talisomycin; Taxane; Taxoid; Tecogalan Sodium; Tegafur; Teloxantrone Hydrochloride; Temoporfm; Teniposide; Teroxirone; Testolactone; Thiamiprine; Thioguanine; Thiotepa; Thymitaq;
Tiazofurin; Tirapazamine; Tomudex; TOP53; Topotecan Hydrochloride; Toremifene Citrate;
Trestolone Acetate; Triciribine Phosphate; Trimetrexate; Trimetrexate Glucuronate; Triptorelin;
Tubulozole Hydrochloride; Uracil Mustard; Uredepa; Vapreotide; Verteporfin; Vinblastine;
Vinblastine Sulfate; Vincristine; Vincristine Sulfate; Vindesine; Vindesine Sulfate; Vinepidine Sulfate; Vinglycinate Sulfate; Vinleurosine Sulfate; Vinorelbine Tartrate; Vinrosidine Sulfate;
Vinzolidine Sulfate; Vorozole; Zeniplatin; Zinostatin; Zorubicin Hydrochloride; 2-
Chlorodeoxyadenosine; 2' Deoxyformycin; 9-aminocamptothecin; raltitrexed; N-propargyl-5,8- dideazafolic acid; 2chloro-2'-arabino-fluoro-2'-deoxyadenosine; 2-chloro-2'-deoxyadenosine; anisomycin; trichostatin A; hPRL-G129R; CEP-751 ; linomide; sulfur mustard; nitrogen mustard (mechlor ethamine); cyclophosphamide; melphalan; chlorambucil; ifosfamide; busulfan; N-methyl-
Nnitrosourea (MNU); N, N'-Bis (2-chloroethyl)-N-nitrosourea (BCNU); N- (2-chloroethyl)-N' cyclohexyl-N-nitrosourea (CCNU); N- (2-chloroethyl)-N'- (trans-4-methylcyclohcxyl-N-nitrosourea
(MeCCNU); N- (2-chloroethyl)-N'- (diethyl) ethylphosphonate-N-nitrosourea (fotemustine); streptozotocin; diacarbazine (DTIC); mitozolomidc; tcmozolomide; thiotepa; mitomycin C; AZQ; adozelesin; Cisplatin; Carboplatin; Ormaplatin; Oxaliplatin;C 1 -973; DWA 21 14R; JM216; JM335;
Bis (platinum); tomudex; azacitidine; cytarabine; gemcitabine; 6-Mercaptopurine; 6-Thioguanine;
Hypoxanthine; teniposide 9-amino camptothecin; l opotecan; CPT-1 1 ; Doxorubicin; Daunomycin;
Epirubicin; darubicin; mitoxantrone; losoxantrone; Dactinomycin (Actinomycin D); amsacrine; pyrazoloacridine; all-trans retinol; 14-hydroxy-retro-retinol; all-trans retinoic acid; N- (4- Hydroxyphenyl) rctinamide; 13-cis retinoic acid; 3-Methyl TTNEB; 9-cis retinoic acid; fludarabine
(2-F-ara-AMP); or 2-chlorodeoxyadenosine (2-Cda). Other therapeutic compounds include, but are not limited to, 20-pi-l,25 dihydroxy vitamin
D3; 5-ethynyluracil; abiraterone; aclarubicin; acylfulvene; adecypenol; adozelesin; aldesleukin;
ALL-TK antagonists; altretamine; ambamustine; amidox; amifostine; aminolevulinic acid; amrubicin; amsacrine; anagrelide; anastrozole; andrographolide; angiogenesis inhibitors; antagonist D; antagonist G; antarelix; anti-dorsalizing morphogenetic protein- 1; antiandrogen, prostatic carcinoma; antiestrogen; antineoplaston; antisense oligonucleotides; aphidicolin glycinate; apoptosis gene modulators; apoptosis regulators; apurinic acid; ara-CDP-DL-PTBA; argininedeaminase; asulacrine; atamestane; atrimustine; axinastatin 1; axinastatin 2; axinastatin 3; azasetron; azatoxin; azatyrosine; baccatin III derivatives; balanol; batimastat; BCR/ ABL antagonists; benzochlorins; benzoylstaurosporine; beta lactam derivatives; beta-alethine; betaclamycin B; betulinic acid; bFGF inhibitor; bicalutamide; bisantrene; bisaziridinylspermine; bisnafide; bistratene A; bizelesin; breflate; bleomycin A2; bleomycin B2; bropirimine; budotitane; buthionine sulfoximine; calcipotriol; calphostin C; camptothecin derivatives (e.g., 10-hydroxy-camptothecin); canarypox IL-2; capecitabine; carboxamide-amino-triazole; carboxyamidotriazole; CaRest M3; CARN 700; cartilage derived inhibitor; carzelesin; casein kinase inhibitors (ICOS); castanospermine; cecropin B; cetrorelix; chlorins; chloroquinoxaline sulfonamide; cicaprost; cis-porphyrin; cladribinc; clomifene analogues; clotrimazole; collismycin A ; collismycin B; combretastatin A4; combretastatin analogue; conagenin; crambescidin 816 ; crisnatol; cryptophycin 8; cryptophycin A derivatives; curacin A; cyclopentanthraquinones; cycloplatam; cypemycin; cytarabine ocfosfate; cytolytic factor; cytostatin; dacliximab; decitabine; dehydrodidemnin B; 2'deoxycoformycin (DCF); deslorelin; dexifosfamide; dexrazoxane; dexverapamil; diaziquone; didemnin B; didox; diethylnorspermine; dihydro-5- azacytidine; dihydrotaxol, 9- ; dioxamycin; diphenyl spiromustine; discodermolide; docosanol; dolasetron; doxifluridine; droloxifene; dronabinol; duocarmycin SA; ebselen; ecomustine; edelfosine; edrecolomab; eflornithine; elemene; emitefur; epirubicin; epothilones (A, R = H; B, R = Me); epithilones; epristeride; estramustine analogue; estrogen agonists; estrogen antagonists; etanidazole; ctoposide; etoposide 4'-phosphate (etopofos); exemestane; fadrozole; fazarabine; fenretinide; filgrastim; finasteride; flavopiridol; flezelastine; fluasterone; fludarabine; fluorodaunorunicin hydrochloride; forfenimex; formestane; fostriecin; fotemustine; gadolinium texaphyrin; gallium nitrate; galocitabine; ganirelix; gelatinase inhibitors; gemcitabine; glutathione inhibitors; hepsulfam; heregulin; hexamethylene bisacetamide; homoharringtonine (HHT); hypericin; ibandronic acid; idarubicin; idoxifene; idramantone; ilmofosine; ilomastat; imidazoacridones; imiquimod; immunostimulant peptides; insulin-like growth factor- 1 receptor inhibitor; interferon agonists; interferons; interleukins; iobenguane; iododoxorubicin; iporaeanol, 4- ; irinotecan; iroplact; irsogladine; isobengazole; isohomohalicondrin B; itasetron; jasplakinolide; kahalalide F; lamellarin-N triacetate; lanreotide; leinamycin; lenograstim; lentinan sulfate; leptolstatin; letrozole; leukemia inhibiting factor; leukocyte alpha interferon; leuprolide + estrogen + progesterone; leuprorelin; levamisole; liarozole; linear polyamine analogue; lipophilic disaccharide peptide; lipophilic platinum compounds; lissoclinamide 7; lobaplatin; lombricine; lometrexol; lonidamine; losoxantrone; lovastatin; loxoribine; lurtotecan; lutetium texaphyrin; lysofylline; lytic peptides; maytansine; mannostatin A; marimastat; masoprocol; maspin; matrilysin inhibitors; matrix metalloproteinase inhibitors; menogaril; rnerbarone; meterelin; methioninase; metoclopramide; MIF inhibitor; ifepristone; miltefosine; mirimostim; mismatched double stranded RNA; mithracin; mitoguazone; mitolactol; mitomycin analogues; mitonafide; mitotoxin fibroblast growth factor- saporin; mitoxantrone; mofarotene; molgramostim; monoclonal antibody, human chorionic gonadotrophin; monophosphoryl lipid A + myobacterium cell wall sk; mopidamol; multiple drug resistance gene inhibitor; multiple tumor suppressor 1 -based therapy; mustard anticancer agent; mycaperoxide B; mycobacterial cell wall extract; myriaporone; N-acetyldinalinc; N-substituted benzamides; nafarelin; nagrestip; naloxone + pentazocine; napavin; naphterpin; nartograstim; nedaplatin; nemorubicin; neridronic acid; neutral endopeptidase; nilutamide; nisamycin; nitric oxide modulators; nitroxide antioxidant; nitrullyn; 06-benzylguanine; octreotide; okicenone; oligonucleotides; onapristone; ondansetron; ondansetron; oracin; oral cytokine inducer; ormaplatin; osaterone; oxaliplatin; oxaunomycin; paclitaxel analogues; paclitaxel derivatives; palauamine; palmitoylrhizoxin; pamidronic acid; panaxytriol; panomifene; parabactin; pazelliptine; pegaspargase; peldesine; pentosan polysulfate sodium; pentostatin; pentrozole; perflubron; perfosfamide; perillyl alcohol; phenazinomycin; phcnylacetate; phosphatase inhibitors; picibanil; pilocarpine hydrochloride; pirarubicin; piritrexim; placetin A; placetin B; plasminogen activator inhibitor; platinum complex; platinum compounds; platinum-triamine complex; podophyllotoxin; porfimer sodium; porfiromycin; propyl bis-acridone; prostaglandin J2; proteasome inhibitors; protein A-based immune modulator; protein kinase C inhibitor; protein kinase C inhibitors, microalgal; protein tyrosine phosphatase inhibitors; purine nucleoside phosphorylase inhibitors; purpurins; pyrazoloacridine; pyridoxylated hemoglobin polyoxyethylene conjugate; raf antagonists; raltitrexed; ramosetron; ras farnesyl protein transferase inhibitors; ras inhibitors; ras-GAP inhibitor; retelliptine demethylated; rhenium Re 186 etidronate; rhizoxin; ribozymes; RII retinamide; rogletimide; rohitukine; romurtide; roquinimex; rubiginone B 1 ; ruboxyl; safingol; saintopin; SarCNU; sarcophytol A; sargramostim; Sdi 1 mimetics; semustine; senescence derived inhibitor 1 ; sense oligonucleotides; signal transduction inhibitors; signal transduction modulators; single chain antigen binding protein; sizofiran; sobuzoxane; sodium borocaptate; sodium phenylacetate; solverol; somatomedin binding protein; sonermin; sparfosic acid; spicamycin D; spiromustine; splenopentin; spongistatin 1 ; squalamine; stem cell inhibitor; stem-cell division inhibitors; stipiamide; stromelysin inhibitors; sulfmosine; superactive vasoactive intestinal peptide antagonist; suradista; suramin; swainsonine; synthetic glycosaminoglycans; tallimustine; tamoxifen methiodide; tauromustine; tazarotene; tecogalan sodium; tegafur; tellurapyrylium; telomerasc inhibitors; temoporfin; temozolomide; teniposide; tetrachlorodecaoxide; tetrazomine; thaliblastine; thalidomide; thiocoraline; thrombopoietin; thrombopoietin mimetic; thymalfasin; thymopoietin receptor agonist; thymotrinan; thyroid stimulating hormone; tin ethyl etiopurpurin; tirapazamine; titanocene dichloride; topotecan; topsentin; toremifenc; totipotent stem cell factor; translation inhibitors; tretinoin; triacetyluridine; triciribine; trimetrexate; triptorelin; tropisetron; turosteride; tyrosine kinase inhibitors; tyrphostins; UBC inhibitors; ubenimex; urogenital sinus-derived growth inhibitory factor; urokinase receptor antagonists; vapreotide; variolin B; vector system, erythrocyte gene therapy; velaresol; veraminc; verdins; verteporfin; vinorelbine; vinxaltine; vitaxin; vorozole; zanoterone; zeniplatin; zilascorb; and zinostatin stimalamer. The HSA linker agents of the invention can also include site-specifically conjugated molecules and moieties. Site-specific conjugation allows for the controlled stoichiometric attachment to specific residues in the HSA linker of cytotoxic, immunomodulatory, or cytostatic agents including, e.g., anti tubulin agents, DNA minor groove binders, DNA replication inhibitors, alkylating agents, anthracyclines, antibiotics, antifolates, antimetabolites, chemotherapy or radiation sensitizer, duocarmycins, etoposides, fluorinated pyrimidines, ionophores, lexitropsins, nitrosoureas, platinols, purine antimetabolites, puromycins, steroids, taxanes, topoisomerase inhibitors, and vinca alkaloids or any other molecules or moieties described herein.
Techniques for conjugating therapeutic agents to proteins, and in particular to antibodies, are well-known (e.g., Arnon et al, "Monoclonal Antibodies For Immunotargeting Of Drugs In Cancer Therapy," in Monoclonal Antibodies And Cancer Therapy (Reisfeld et al, eds., Alan R. Liss, Inc.,
1985); Hellstrom et al, "Antibodies For Drug Delivery," in Controlled Drug Delivery (Robinson et al, eds., Marcel Dekker, Inc., 2nd cd. 1987); Thorpe, "Antibody Carriers Of Cytotoxic Agents In Cancer Therapy: A Review," in Monoclonal Antibodies '84: Biological And Clinical Applications (Pinchera et al, cds., 1985); "Analysis, Results, and Future Prospective of the Therapeutic Use of Radiolabeled Antibody In Cancer Therapy," in Monoclonal Antibodies For Cancer Detection And Therapy (Baldwin et al, eds., Academic Press, 1985); Thorpe et ah, Immunol. Rev. 62:119-58
(1982); and Doronina et al, "Development of potent monoclonal antibody auristatin conjugates for cancer therapy," Nature Biotech. 21:(7)778-784 (2003)). See also, e.g., PCT publication WO 89/12624.
An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to a lytic peptide to form an agent of the invention. Such lytic peptides induce cell death and include, but are not limiled to, streptolysin O; stoichactis toxin; phallolysin; staphylococcus alpha toxin; holothurin A; digitonin; melittin; lysolecithin; cardiotoxin; and cerebratulus A toxin (Kem et al, J. Biol. Chem. 253(16):5752-5757, 1978). An agent of the invention can also be formed by conjugating an HSA linker of the invention, or any molecule or moiety conjugated thereto (e.g., antibody or antibody fragment conjugates), to a synthetic peptide that shares some sequence homology or chemical characteristics with any of the naturally occurring peptide lysins; such characteristics include, but are not limited to, linearity, positive charge, amphipathicity, and formation of alpha-helical structures in a hydrophobic environment (Leuschner et al, Biology of Reproduction 73:860-865, 2005). An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to an agent that induces complement-mediated cell lysis such as, for example, the immunoglobulin Fc subunit. An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also coupled to any member of the phospholipase family of enzymes (including phospholipase A, phospholipase B, phospholipase C, or phospholipase D) or to a catalytically-active subunit thereof. An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to a radioactive agent to form an agent that can be used for detection or therapeutic applications. Radioactive agents that can be used include but are not limited to Fibrinogen 125I; Fludeoxyglucose 18F; Fluorodopa 18F; Insulin 125I; Insulin 131I; lobenguane 123I; Iodipamide Sodium 131I; Iodoantipyrine 131I; Iodocholesterol 131I ; lodohippurate Sodium 123I; Iodohippurate Sodium 125I; Iodohippurate Sodium 131I; Iodopyracct 125I; Iodopyracet 131I; lofetamine Hydrochloride 123I; Iomethin 125I; Iomethin 131I; lothalamate Sodium 125I; Iothalamate Sodium 131I; tyrosine 131I; Liothyronine 125I; Liothyronine 131I; Merisoprol Acetate 197Hg; Merisoprol Acetate 203Hg; Merisoprol
7Hg; Selenomethionine 75Se; Technetium 99mTc Antimony Trisulflde Colloid; Technetium 99mTc Bicisate; Technetium 99mTc Disofenin; Technetium 99mTc Etidronate; Technetium 99mTc Exametazime; Technetium mTc Furifosmin; Technetium mTc Gluceptate; Technetium 99mTc Lidofenin; Technetium 99mTc Mebrofenin; Technetium 99mTc Medronate; Technetium 99mTc Medronate Disodium; Technetium 99mTc Mertiatide; Technetium 99mTc Oxidronate; Technetium 99mTc Pentetate; Technetium 99mTc Pentetate Calcium Trisodium; Technetium 99mTc Sestamibi; Technetium 99mTc Siboroxime; Technetium 99mTc; Succimer; Technetium 99mTc Sulfur Colloid; Technetium 99mTc Teboroxime; Technetium 99mTc Tetrofosmin; Technetium 99mTc Tiatide; Thyroxine 125I; Thyroxine 131I; Tolpovidone 131I; Triolein 125I; or Triolein 131I.
Additionally, a radioisotope could be site-specifically conjoined to an HSA linker or HSA linker conjugate. The available reactive groups could be used to conjugate site-specific bifunctional chelating agents for labeling of radioisotopes, including 1231, 124I, 125I, '311, 99mTc, 11 1In, 64Cu, 67Cu, 186Re, 188Re, 177Lu, 90Y, 77As, 72As, 86Y, 89Zr, 21 1At, 212Bi, 213Bi, or 225Ac. Therapeutic or cytotoxic agents incorporated into or coupled with an HSA linker or an HSA linker conjugate may further include, for example, anti-cancer Supplementary Potentiating Agents, including, but not limited to: tricyclic anti -depressant drugs (e.g., imipramine, desipramine, amitryptyline, clomipramine, trimipramine, doxepin, nortriptyline, protriptyline, amoxapine, and maprotiline); non-tricyclic anti-depressant drugs (e.g., sertraline, trazodone, and citalopram); Ca21 antagonists (e.g., verapamil, nifedipine, nitrendipine, and caroverine); Calmodulin inhibitors (e.g., prenylamine, trifluoroperazine, and clomipramine); Amphotericin B; Triparanol analogs (e.g., tamoxifen); antiarrhythmic drugs (e.g., quinidine); antihypertensive drugs (e.g., reserpine); Thiol depleters (e.g., buthionine and sulfoximine) and Multiple Drug Resistance reducing agents such as Crcmaphor EL. An agent of the invention that includes an HSA linker, or any molecule or moiety conjugated thereto, can also be coupled to or administered with cytokines (e.g., granulocyte colony stimulating factor, interferon-alpha, and tumor necrosis factor-alpha). An LISA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to an antimetabolic agent. Antimetabolic agents include, but are not limited to, the following compounds and their derivatives: azathioprine, cladribine, cytarabine, dacarbazine, fludarabine phosphate, fluorouracil, gencitabine chlorhydrate, mercaptopurine, methotrexate, mitobronitol, mitotane, proguanil chlorohydrate, pyrimethamine, raltitrexed, trimetrexate glucuronate, urethane, vinblastine sulfate, vincristine sulfate, etc. More preferably, an HSA linker or conjugate of the invention can be coupled to a folic acid-type antimetabolite, a class of agents that includes, for example, methotrexate, proguanil chlorhydrate, pyrimethanime, trimethoprime, or trimetrexate glucuronate, or derivatives of these compounds. An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled to a member of the anthracycline family of neoplastic agents, including but not limited to aclarubicine chlorhydrate, daunorubicine chlorhydrate, doxorubicine chlorhydrate, epirubicine chlorhydrate, idarubicine chlorhydrate, pirarubicine, or zorubicine chlorhydrate; a camptothecin, or its derivatives or related compounds, such as 10, 1 1 methylenedioxycamptothecin; or a member of the maytansinoid family of compounds, which includes a variety of structurally-related compounds, e.g., ansamitocin P3, maytansine, 2'-N-demethylmaytanbutine, and maytanbicyclinol.
An HSA linker of the invention, or any molecule or moiety conjugated thereto, can also be coupled directly to a cytotoxic or therapeutic agent using known chemical methods, or coupled indirectly to a cytotoxic or therapeutic agent via an indirect linkage. For example, an HSA linker can be attached to a chelating group that is attached to the cytotoxic or therapeutic agent. Chelating groups include, but are not limited to, ininocarboxylic and polyaminopolycarboxylic reactive groups, diethylenetriaminepentaacetic acid (DTPA), and l,4,7,10-tetraazacyclododecane-l ,4,7,10-tetraacetic acid (DOTA). For general methods, see, e.g., Liu et al, Bioconjugate Chem. 12(4):653, 2001; Chmg et al., WO 89/12631; Kieffer et al, WO 93/12112; Albert et ai, U.S.P.N. 5,753,627; and WO 91/01144 (each of which are hereby incorporated by reference).
An agent of the invention that includes, e.g., an HSA linker, one or more binding moieties (with or without intervening polypeptide connectors, as defined herein), and a therapeutic or cytotoxic agent, can be specifically targeted by the binding moiety (e.g., antibody, antibody fragment, or receptor/ligand) to a cell or tissue, thereby allowing selective destruction of the target cell or tissue to which the binding moiety is directed. For example, an agent of the invention can be used to target and destroy cancer cells of the lung, breast, prostate, and colon in order to prevent, stabilize, inhibit the progression of, or treat cancers originating in these organs when the agent includes a binding moiety that specifically binds to the cancer cells in these organs. Also, for example, the agents of the invention can be used to target and destroy cells of the vasculature, brain, liver, kidney, heart, lung, prostate, colon, nasopharynx, oropharynx, larynx, bronchus, and skin in order to prevent, stabilize, inhibit the progression of, or treat age-related, tobacco-related, or autoimmune diseases or conditions relating to these organs by targeting, in the case of autoimmune disease for example, autoreactive T cells (e.g., by binding to and agonizing tumor necrosis factor receptor 2 (TNFR2) present on the autoreactive T cells).
An HSA linker of the invention, when expressed recombinantly, can be joined to a cytotoxic polypeptide. Cytotoxic polypeptides, when brought into contact with a target cell (e.g., a cancer cell), exerts cytotoxic or cytostatic effects on the cell. For example, a cytotoxic polypeptide, when joined with an HSA linker of the invention, can induce events in a target cell upon binding of the target cell that leads to cell death through, for example, apoptosis, necrosis, or senescence. Alternatively, a cytotoxic polypeptide joined with an HSA linker of the invention can interfere or inhibit normal cellular biological activities, such as division, metabolism, and growth, or abnormal cellular biological activities, such as metastasis.
For example, an HSA linker of the invention joined to caspase 3 will bind a target cell (e.g., a cancer cell) and undergoe endocytosis. Once internalized by the target cell, the caspase portion of the FISA linker conjugate can initiate the pro-apoptotic caspase cascade, ultimately resulting in the apoptosis of the target cell.
In a preferred embodiment, an HSA linker of the invention includes a cytotoxic polypeptide capable of killing a cancer cell. In another embodiment of the invention, the cytotoxic polypeptide inhibits the growth or metastasis of a cancer cell. The cytotoxic polypeptide joined with an HSA linker of the invention can also be used to kill or inhibit the growth of cells associated with, necessary for, or beneficial to cancer growth, such as endothelial cells that form blood vessels that perfuse solid tumors.
In an embodiment, an HSA linker of the invention can include two or more cytotoxic polypeptides so as to modulate (e.g., increase) the specificity, intensity, or duration of the cytotoxic or cytostatic effect on a target cell (e.g., a cancer cell). In another embodiment, the HSA linker of the invention is joined to an activatable form of cytotoxic polypeptide (e.g., a biologically-inactive pro-agent that is capable of activation upon cleavage by an enzyme or drug). In this embodiment, texposure (e.g., in vivo) of the cytotoxic polypeptide pro-agent to an enzyme or drug capable of cleaving the cytotoxic polypeptide, renders the cytotoxic polypeptide biologically-active (e.g., cytotoxic or cytostatic). An example of a biologically-inactive cytotoxic polypeptide that can be converted to a biologically-active form for use with an HSA linker of the invention is a procaspase (e.g., procaspase 8 or 3). For example, the procaspase 8 domain of an HSA linker of the invention can be cleaved by TRAIL or FasL upon internalization by a target cell (e.g., a cancer cell). Once cleaved, the biologically active caspase 8 can promote apoptosis of the target cell.
In one embodiment of the invention, the cytotoxic polypeptide joined to an HSA linker of the invention can include a full-length peptide, polypeptide, or protein, or biologically-active fragment thereof (e.g., a "death domain"), known to have cytotoxic or cytostatic properties. Peptides, polypeptides, or proteins with cytotoxic or cytostatic properties can be altered (e.g., by making amino acid substitutions, mutations, truncations, or additions) to facilitate incorporation of the cytotoxic sequence into an agent of the invention. Desirable alterations include, for example, changes to the amino acid sequence that facilitate protein expression, longevity, cell secretion, and target cell toxicity.
The invention also features a nucleic acid molecule encoding a cytotoxic polypeptide as a fusion protein with an HSA linker of the invention, optionally including binding moieities and polypeptide connectors. The nucleic acid molecule can be incorporated into a vector (e.g., an expression vector), such that, upon expression of the HSA linker of the invention in a cell transfected or transduced with the vector, the cytotoxic polypeptide, HSA linker, and binding moieties, if present, are operably linked (e.g., fused, contiguously-joined, or tethered together). Examples of peptides, polypeptides, and proteins that can be used as a cytotoxic polypeptide of the present invention include, but are not limited to, apoptosis-inducing proteins such as cytochrome c (SEQ ID NO:39); caspases (e.g., caspase 3 (SEQ ID NO:36) and caspase 8 (SEQ ID NO:37)); procaspases, granzymes (e.g., granzymes A and B (SEQ ID NO: 38)); tumor necrosis factor (TNF) and TNF receptor family members, including TNF-alpha (TNFα; SEQ ID NO:40)), TNF-beta, Fas (SEQ ID NO:41) and Fas ligand; Fas-associated death domain-like IL-lβ converting enzyme (FLICE); TRAIL/APO2L (SEQ ID NO:45) and TWEAK/APO3L (see, e.g., U.S. Patent Application Publication No. 2005/0187177, herein incorporated by reference); pro-apoptotic members of the BcI- 2 family, including Bax (SEQ ID NO:46), Bid, Bik, Bad (SEQ ID NO:42), Bak, and RICK (see, e.g., U.S. Patent Application Publication No. 2004/0224389, herein incorporate by reference); vascular apoptosis inducing proteins 1 and 2 (VAPl and VAP2; Masuda et al., Biochem. Biophys. Res. Commun. 278:197-204 (2000)); pierisin (SEQ ID NO:44; Watanabe et al., Biochemistry 96:10608- 10613 (1999)); apoptosis-inducing protein (SEQ ID NO:43; AIP; Murawaka et al., Nature 8:298-307 (2001)); IL-I α propiece polypeptide (see, e.g., U.S. Patent 6,191,269, herein incorporated by reference); apoptin and apoptin-associated proteins such as AAP-I (see, e.g., European Patent Application Publication No. EP 1083224, herein incorporated by reference); anti-angiogenic factors such as endostatin and angiostatin; and other apoptosis-inducing proteins, including those described in the following International and U.S. Patent Application Publications, each herein incorporated by reference: U.S. 2003/0054994, U.S. 2003/0086919, U.S. 2007/0031423, WO 2004/0781 12, WO 2007/012430, and WO 2006/0125001 (intracellular domain of delta 1 and jagged 1).
Wild-type HSA Linker Conjugates
The present invention also encompasses a naturally-occurring wild-type HSA linker, the amino acid and nucleotide sequences of which are provided in SEQ ID NOS:3 and 4, respectively, in the formation of binding, diagnostic, or therapeutic agents of the invention. In all embodiments of the invention utilizing an HSA linker with the amino acid sequence listed in SEQ ID NO:3, one or more polypeptide connectors, as described above, are covalently attached to the amino and/or carboxy termini of the HSA linker, or to an amino acid residue within the HSA linker sequence, to facilitate conjugation of one or more binding moieties.
Truncations
The invention further features a conjugate that is formed using a truncated wild-type USA polypeptide, which can be combined with one or more polypeptide connectors or binding moieties. A wild-type HSA polypeptide lacking 1, 2, 3, 4, 5, 10, 15, 20, 50, 100, 200 or more amino acids of the full-length wild-type HSA amino acid sequence (i.e., SEQ \D NO:3) can be conjoined to any of the binding moieties or diagnostic or therapeutic agents described herein. Truncations can occur at one or both ends of the HSA linker, or can include a deletion of internal residues. Truncation of more than one amino acid residue need not be linear. Examples of wild-type HSA linkers of the invention include those having, in combination with one or more polypeptide connectors or binding moieties, one or more of domain I (SEQ ID NO:56; residues 1-197 of SEQ ID NO:3), domain II (SEQ [D NO:54; residues 189-385 of SEQ ID NO:3), or domain III (SEQ ID NO:57; residues 381- 585 of SEQ ID NO:3), or combinations thereof, e.g., domains I and II, I and III, and II and III. Serum clearance rates of a conjugate of the invention (e.g., a bispecific HSA-drug or radioisotope-containing agent), can be optimized by testing conjugates containing a truncated wild- type HSA linker, as describe above. Additional HSA Linker Modifications
The invention further provides site-specific chemical modification of amino acid residues in the HSA linker polypeptide. The correctly-folded tertiary structure of HSA displays certain amino acid residues on the external face of the protein. Chemically-reactive amino acid residues (e.g., cysteine) can be substituted for these surface-exposed residues to allow site-specific conjugation of a diagnostic or therapeutic agent.
The invention also provides for the addition or removal of asparagine, serine, or threonine residues from an HSA linker polypeptide sequence to alter glycosylation of these amino acid residues. Glycosylation sites added to an HSA linker are preferably surface-exposed, as discussed herein. Glycosyl or other carbohydrate moieties introduced to an HSA linker can be directly conjugated to diagnostic, therapeutic, or cytotoic agents.
Cysteine (Thiol) Conjugation
The invention features the substitution of surface-exposed amino acid residues of the HSA linker polypeptide with cysteine residues to allow for chemical conjugation of diagnostic, therapeutic, or cytotoxic agents. Cysteine residues exposed on the surface of the HSA linker polypeptide (when folded into its native tertiary structure) allow the specific conjugation of a diagnostic, therapeutic, or cytotoxic agent to a thiol reactive group such as maleimide or haloacetyl. The nucleophilic reactivity of the thiol functionality of a cysteine residue to a maleimide group is about 1000 times higher compared to any other amino acid functionality in a protein, such as the amino group of a lysine residue or the N-terminal amino group. Thiol specific functionality in iodoacetyl and maleimide reagents may react with amine groups, but higher pll (>9.0) and longer reaction times are required (Garman, 1997, Non-Radioactive Labelling: A Practical Approach, Academic Press, London). The amount of free thiol in a protein may be estimated using the standard Ellman's assay. In some instances, reduction of the disulfide bonds with a reagent such as dithiothreitol (DTT) or selenol (Singh et al, Anal. Biochem. 304:147-156 (2002)) is required to generate the reactive free thiol.
Sites for cysteine substitution can be identified by analysis of surface accessibility of the HSA linker (e.g., the identification of serine and threonine residues as suitable for substitution are described in Example 1 below). The surface accessibility can be expressed as the surface area (e.g., square angstroms) that can be contacted by a solvent molecule, e.g., water. The occupied space of water is approximated as a sphere with a 1.4 angstrom radius. Software for calculating the surface accessibility of each amino acid of a protein is freely available or licensable. For example, the CCP4 Suite of crystallography programs which employ algorithms to calculate the surface accessibility of each amino acid of a protein with known x-ray crystallography derived coordinates ("The CCP4 Suite: Programs for Protein Crystallography" Acta. Cryst. D50:760-763 (1994); www.ccp4.ac.uk/dist/html/INDEX.html). Solvent accessibility may also be assessed using the free software Deep View Swiss PDB Viewer downloaded from the Swiss Institute of Bioinformatics. The substitution of cysteines at surface-exposed sites allows for conjugation of the reactive cysteine to a thiol reactive group linked to the diagnostic or therapeutic agent.
Glycosylation
In addition, altered serum clearance rates can be achieved by engineering glycosylation sites into the HSA linker. In certain embodiments, an HSA linker of the invention is glycosylated. Glycosylation of polypeptides is typically either N-linked or O-linked. N-linked refers to the attachment of a carbohydrate moiety to the side chain of an asparagine residue. The tripeptide sequences asparagine-X-serine and asparagine-X-threonine, where X represents any amino acid except proline, are the recognition sequences for enzymatic attachment of the carbohydrate moiety to the asparagine side chain. Thus, the presence of either of these tripeptide sequences in a polypeptide creates a potential glycosylation site. O-linked glycosylation refers to the attachment of one of the sugars N-aceylgalactosamine, galactose, or xylose to a hydroxyamino acid, most commonly serine or threonine, although 5-hydroxyproline or 5-hydroxylysine may also be used.
Addition or deletion of glycosylation sites to the HSA linker is conveniently accomplished by altering the amino acid sequence such that one or more of the above-described tripeptide sequences (for N-linked glycosylation sites) is created. The alteration may also be made by the addition, deletion, or substitution of one or more serine or threonine residues to the sequence of the original
HSA linker (for O-linked glycosylation sites). The resulting carbohydrate structures on HSA can also be used for site-specific conjugation of cytotoxic, immunomodulatory or cytostatic agents as described above. HSA Linker Agents in Combination with Therapeutic Agents
The invention further provides for the administration of the HSA linker agents described herein with one or more of the therapeutic, cytotoxic, or cytostatic agents described herein. For example, a patient suffering from breast cancer can be administered an HSA linker containing ErbB2 and ErbB3 scFvs (e.g., B2B3-1) can be co-administered with, e.g., doxorubicin, cyclophosphamide, and paclitaxel, a common chemotherapeutic regimen for the treatment of breast cancer. Additional biological and chemical agents useful for the treatment of cancer are listed in Appendix C.
HSA Linker Agents in Combination with Radiotherapy or Surgery The invention provides for the administration of an HSA linker agent of the invention prior to, concurrent with, or following radiotherapy or surgery. For example, a patient suffering from a proliferative disorder (e.g., breast cancer) can receive an HSA linker agent, alone or in combination with other therapeutic, cytotoxic, or cytotoxic agents as described herein concurrent with targeted radiotherapy or surgical intervention (e.g., lumpectomy or mastectomy) at the site of the cancerous tissue. Radiotherapies suitable for use in combination with HSA linker agents of the invention include brachytherapy and targeted intraoperative radiotherapy (TARGIT).
Pharmaceutical Compositions
Pharmaceutical compositions of the invention contain a therapeutically or diagnostically effective amount of an HSA linker conjugate of the invention that includes one or more of a binding moiety (e.g., antibodies or antibody fragments), diagnostic agent (e.g., radionuclide or chelating agents), or a therapeutic agent (e.g., cytotoxic or immunomodulatory agents) agent. The active ingredients, an HSA linker conjugate of the invention (prepared with one or more of a binding moiety, diagnostic agent, or therapeutic agent) can be formulated for use in a variety of drug delivery systems. One or more physiologically acceptable excipients or carriers can also be included in the compositions for proper formulation. Suitable formulations for use in the present invention are found in Remington's Pharmaceutical Sciences, Mack Publishing Company, Philadelphia, PA, 17th ed. (1985). For a brief review of methods for drug delivery, see, Langer Science 249:1527-1533 (1990). The pharmaceutical compositions are intended for parenteral, intranasal, topical, oral, or local administration, such as by a transdermal means, for prophylactic and/or therapeutic treatment. Commonly, the pharmaceutical compositions are administered parenterally (e.g., by intravenous, intramuscular, or subcutaneous injection), or by oral ingestion, or by topical application. Thus, the invention provides compositions for parenteral administration that include an HSA linker of the invention, with or without one or more binding, diagnostic, and/or therapeutic agent conjugated thereto, dissolved or suspended in an acceptable carrier, preferably an aqueous carrier, e.g., water, buffered water, saline, PBS, and the like. The compositions may contain pharmaceutically acceptable auxiliary substances as required to approximate physiological conditions, such as pH adjusting and buffering agents, tonicity adjusting agents, wetting agents, detergents and the like. The invention also provides compositions for oral delivery, which may contain inert ingredients such as binders or fillers for the formulation of a tablet, a capsule, and the like. Furthermore, this invention provides compositions for local administration, which may contain inert ingredients such as solvents or emulsifiers for the formulation of a cream, an ointment, and the like.
These compositions may be sterilized by conventional sterilization techniques, or may be sterile filtered. The resulting aqueous solutions may be packaged for use as is, or lyophilized, the lyophilized preparation being combined with a sterile aqueous carrier prior to administration. The pH of the preparations typically will be between 3 and 1 1, more preferably between 5 and 9 or between 6 and 8, and most preferably between 7 and 8, such as 7 to 7.5. The resulting compositions in solid form may be packaged in multiple single dose units, each containing a fixed amount of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in a scaled package of tablets or capsules, for example. The composition in solid form can also be packaged in a container for a flexible quantity, such as in a squeezable tube designed for a topically applicable cream or ointment.
The compositions containing an effective amount of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered to a mammal (e.g., a human) for prophylactic and/or therapeutic treatments. In prophylactic applications, compositions of the invention containing an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) are administered to a patient susceptible to or otherwise at risk of developing a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease). Such an amount is defined to be a "prophylactically effective dose." In this use, the precise amounts again depend on the patient's state of health, but generally range from about 0.5 mg to about 400 mg of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) per dose (e.g., 10 mg, 50 mg, 100 mg, 200 mg, 300 mg, or 400 mg per dose) and from about 0.1 μg to about 300 mg of one or more immunomodulatory agents per dose (e.g., 10 μg, 30 μg, 50 μg, 0.1 mg, 10 mg, 50 mg, 100 mg, or 200 mg per dose). A dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered prophylactically to a patient one or more times per hour, day, week, month, or year (e.g., 2, 4, 5, 6, 7, 8, 9, 10, 1 1, or 12 times per hour, day, week, month, or year). More commonly, a single dose per week of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered.
In therapeutic applications, a dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered to a mammal (e.g., a human) already suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) in an amount sufficient to cure or at least partially arrest or alleviate one or more of the symptoms of the disease or condition and its complications. An amount adequate to accomplish this purpose is defined as a "therapeutically effective dose." Amounts effective for this use may depend on the severity of the disease or condition and general state of the patient, but generally range from about 0.5 mg to about 400 mg of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) per dose (e.g., 10 mg, 50 mg, 100 mg, 200 mg, 300 mg, or 400 mg per dose). A dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered therapeutically to a patient one or more times per hour, day, week, month, or year (e.g., 2, 4, 5, 6, 7, 8, 9, 10, 11, or 12 times per hour, day, week, month, or year). More commonly, a single dose per week of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered.
In several embodiments, the patient may receive an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in the range of about 0.5 to about 400 mg per dose one or more times per week (e.g., 2, 3, 4, 5, 6, or 7 or more per week), preferably about 5 mg to about 300 mg per dose one or more times per week, and even more preferably about 5 mg to about 200 mg per dose one or more times per week. The patient may also receive a biweekly dose of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) in the range of about 50 mg to about 800 mg or a monthly dose of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto, in the range of about 50 mg to about 1 ,200 mg. In other embodiments, an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered to a patient in a typical dosage range of about 0.5 mg per week to about 400 mg per week, about 1.0 mg per week to about 300 mg per week, about 5 mg per week to about 200 mg per week, about 10 mg per week to about 100 mg per week, about 20 mg per week to about 80 mg per week, about 100 mg per week to about 300 mg per week, or about 100 mg per week to about 200 mg per week. An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered in the range of about 0.5 mg every other day to about 100 mg every other day, preferably about 5 mg every other day to about 75 mg every other day, more preferably about 10 mg every other day to about 50 mg every other day, and even more preferably 20 mg every other day to about 40 mg every other day. An
HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may also be administered in the range of about 0.5 mg three times per week to about 100 mg three times per week, preferably about 5 mg three times per week to about 75 mg three times per week, more preferably about 10 mg three times per week to about 50 mg three times per week, and even more preferably about 20 mg three times per week to about 40 mg three times per week.
In non-limiting embodiments of the methods of the present invention, an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) is administered to a mammal (e.g., a human) continuously for 1 , 2, 3, or 4 hours; 1, 2, 3, or 4 times a day; every other day or every third, fourth, fifth, or sixth day; 1 , 2, 3, 4, 5, 6, 7, 8, 9, or 10 times a week; biweekly; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 times a month; bimonthly; 1 , 2, 3, 4, 5, 6, 7, 8, 9, or 10 times every six months; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 times a year; or biannually. An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered at different frequencies during a therapeutic regime. In additional embodiments, an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) may be administered to a patient at the same frequency or at a different frequency. The amount of one or more diagnostic or therapeutic agents and an HSA linker, or any agent conjugated thereto, required to achieve the desired therapeutic effect depends on a number of factors, such as the specific diagnostic or therapeutic agent(s) chosen, the mode of administration, and clinical condition of the recipient. A skilled artisan will be able to determine the appropriate dosages of one or more diagnostic or therapeutic agents and an HSA linker, or any agent conjugated thereto, to achieve the desired results.
Single or multiple administrations of the compositions comprising an effective amount of an HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be carried out with dose levels and pattern being selected by the treating physician. The dose and administration schedule can be determined and adjusted based on the severity of the disease or condition in a mammal (e.g., a human), which may be monitored throughout the course of treatment according to the methods commonly practiced by clinicians or those described herein.
An HSA linker conjugate (prepared with one or more of a binding, diagnostic, and/or therapeutic agent) can be administered to a mammalian subject, such as a human, directly or in combination with any pharmaceutically acceptable carrier or salt known in the art. Pharmaceutically acceptable salts may include non-toxic acid addition salts or metal complexes that are commonly used in the pharmaceutical industry. Examples of acid addition salts include organic acids such as acetic, lactic, pamoic, maleic, citric, malic, ascorbic, succinic, benzoic, palmitic, suberic, salicylic, tartaric, methanesulfonic, toluenesulfonic, or trifluoroacetic acids or the like; polymeric acids such as tannic acid, carboxymethyl cellulose, or the like; and inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid phosphoric acid, or the like. Metal complexes include zinc, iron, and the like. One exemplary pharmaceutically acceptable carrier is physiological saline. Other physiologically acceptable carriers and their formulations are known to one skilled in the art and described, for example, in Remington's Pharmaceutical Sciences, (18l edition), ed. A. Gennaro, 1990, Mack Publishing Company, Easton, PA.
Diagnostic and Therapeutic Applications
The HSA linker conjugates of the invention, as described herein, can be used for diagnostic and therapeutic applications in a human, including, for example, the diagnosis or treatment of proliferative diseases (e.g., cancers, such as melanoma, clear cell sarcoma, and renal cancer) and autoimmune diseases (e.g., multiple sclerosis, rheumatoid arthritis, and uveitis). The following discussion of human proliferative and autoimmune diseases is meant to provide the skilled practitioner with a general understanding of how HSA linker conjugates of the invention can be applied in diagnostic and therapeutic applications and is not meant to limit the scope of the present invention. Proliferative Diseases (Cancer)
An HSA linker conjugate of the invention can be used to diagnose, treat, prevent, or eliminate proliferative diseases such as, but not limited to, breast cancer, melanoma, clear cell sarcoma, renal cancer (e.g., renal cell carcinoma), prostate cancer, lung cancer, gastric cancer, and ovarian cancer. Binding moieties to be conjoined with an HSA linker of the invention for diagnostic or therapeutic application in a patient suspected of having or suffering from a proliferative disease may be chosen based on its ability to specifically bind, agonize, activate, antagonize, or inhibit target molecules (e.g., cell surface receptors such as tyrosine kinase receptors) associated with a proliferative disease. Binding moieties that target, for example, insulin-like growth factor receptor (IGFR, e.g., IGFlR and IGF2R), fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), vascular endothelial growth factor receptor (VEGFR), tumor necrosis factor receptor (TNFR), epidermal growth factor receptor (EGFR, e.g., ErbB2 (HER2/neu)), Fc receptor, c-kit receptor, or mesenchymal epithelial transition factor receptor (c-met; also known as hepatocyte growth factor receptor (HGFR)) can be conjoined to an HSA linker of the invention to diagnose or treat a proliferative disease. Specific binding of a cancer cell by an HSA linker conjugate can allow for detection (e.g., an HSA linker conjoined to a detectable label, as defined herein) or destruction (e.g., an HSA linker conjoined to a cytotoxic agent) of the bound cancer cell. Specific application of HSA linker conjugates of the invention for the treatment of breast and renal cancer is described below.
Breast Cancer
Common forms of breast cancer include invasive ductal carcinoma, a malignant cancer in the breast's ducts, and invasive lobular carcinoma, a malignant cancer in the breast's lobules. Some types of breast cancer cells are known to highly express high levels of epidermal growth factor receptors, especially ErbB2 (i.e., HER2/neu). Aberrant signaling or unregulated activation of EGFRs has been linked to the development and progression of many cancers, including breast cancer. Uncontrolled cellular proliferation mediated via dysfunctional EGFR pathways can be found in a wide variety of solid tumors of epithelial origin and data have linked tumor EGFR expression, overexpression, and dysregulation to advanced disease, metastatic phenotype, resistance to chemotherapy, and an overall poorer prognosis. An FISA linker of the invention conjoined to one or more binding moieties specific for an
EGFR (e.g., anti-ErbB2; trastuzumab) can be used with a diagnostic (e.g., a detectable label) or cytotoxic, cytostatic, or therapeutic agent, as described herein, to diagnose or treat breast cancer. Alternatively, a bispecifϊc HSA linker conjugate that consists of binding moieties specific for ErbB2 and ErbB3, such as "B2B3-1," described further herein, can be employed to diagnose or treat cancers, e.g., breast, kidney, ovarian, and lung cancers. As described above, an HSA linker conjugate of the invention used to treat breast cancer can be administered prior to (e.g., neoadjuvant chemotherapy), concurrent with, or following (e.g., adjuvant chemotherapy) radiotherapy or surgical intervention. An HSA linker conjugate can also be co-administered with other compounds (e.g., antineoplastic agents, such as biological or chemical therapeutics) useful for the treatment of breast cancer. For example, the antineoplastic agents listed in Table 1 , including mitotic inhibitors (e.g., taxanes), topoisomerase inhibitors, alkylating agents (including, e.g., platinum-based agents), selective estrogen modulators (SHRM), aromatase inhibitors, antimetabolites, antitumor antibiotics (e.g., anthracycline antibiotics), anti-VEGF agents, anti-ErbB2 (HER2/neu) agents, and anti-ErbB3 agents, are known to be particularly useful for the treatment of breast cancer. An HSA linker conjugate of the invention can be administered by a clinician in combination with any compound, including those listed in Appendix C, known or thought to be beneficial for the treatment of breast cancer.
Table 1 : Exemplary antineoplastic agents for treatment of breast cancer in combination with HSA linker conjugates of the invention.
Figure imgf000062_0001
Figure imgf000063_0001
Renal Cancer
Kidney cancers, such as renal cell carcinoma, are particularly resistant to traditional radiological and chemical therapies. As such, the application of biological therapeutics, conjoined with an HSA linker of the invention represents an attractive option for patients suffering from these cancers. For example, an HSA linker conjoined with binding moieties that agonize type I interferon or interleukin 2 receptors can be used to treat a renal cancer. As a solid tumor, binding moieties that target and inhibit tumor vascularization (e.g., anti-vascular endothelial growth factor (VEGF) antibodies such as bevacizumab) can also be used for therapeutic effect.
Autoimmune Diseases
An HSA linker conjugate of the invention can be used to diagnose, treat, prevent, or stabilize autoimmune diseases and disorders in e.g., a human patient, such as, e.g., multiple sclerosis (MS), insulin-dependent diabetes mellitus (IDDM), rheumatoid arthritis (RA), uveitis, Sjogren's syndrome, Grave's disease, psoriasis, and myasthenia gravis. Autoimmune diseases and disorders are caused by self-reactive elements of the immune system (e.g., T cells, B cells, and self-reactive antibodies). As such, binding moieties that inhibit, block, antagonize, or deplete (e.g., anti-lymphocyte or anti- thymocyte globulins; basil iximab, daclizumab, or muromonab-CD3 monoclonal antibodies) self- reactive immune cells and antibodies can be conjoined with an HSA linker of the invention for therapeutic use. Binding moieties that function as inflammatory signaling inhibitors (ISI), as defined herein, can be conjoined to an HSA linker of the invention for the treatment of autoimmunity. In addition, binding moieties that inhibit or antagonize integrin function (e.g., an integrin antagonist, as defined herein) can ameliorate or halt disease progression.
In other embodiments of the invention, the binding moiety is a soluble TNF receptor, such as etanercept or lenercept; an antibody directed against a pro-inflammatory cytokine or a proinflammatory cell surface signaling molecule, such as adalimumab, certolizumab, inflixamab, golimumab, and rituxan; a dominant-negative pro-inflammatory cytokine variant, such as XENP345, XPROTM1595, anakinra, and variants disclosed in U.S. Patent Application Publication Nos. 20030166559 and 20050265962; an inhibitor of the signaling pathways downstream of proinflammatory cytokine or pro-inflammatory cell surface signaling molecules, such as DE 096, 5- amino-2-carbonylthiopene derivatives (as described in WO2004089929), ARRY-797, BIRB 796 BS, (l-5-tert-butyl-2-p-tolyl-2H-pyrazol-3-yl)-3-[4-2(morpholin-4-yl-ethoxy)-naphtalen-l-yl]-urea, CHR-3620, CNI-1493, FR-167653 (Fujisawa Pharmaceutical, Osaka, Japan), ISIS 101757 (Isis
Pharmaceuticals), ML3404, NPC31145, PD169316, PHZl 112, RJW67657, 4-(4-(4-fluorophcny I)-I- (3-phenylpropyl)-5-(4-pyridinyl)-lH-imidazol-2-yl)-3-butyn-l-ol, SCIO-469, SB202190, SB203580, (4-(4-fluorophenyl)-2-(4-methylsulfinylphenyl)-5-(4-pyridyl)lH-imidazolc), SB239063, trans- 1 -(4- hydroxycyclohexyl)-4-(4-fluorophenyl-methoxypyridimidin-4-yl)imidazole, SB242235, SD-282, SKF-86002, TAK 715, VX702, and VX745; or an inhibitor of TNF-alpha converting enzyme (TACE), such as BB-1 101, BB-3103, BMS-561392, butynyloxyphenyl β-sulfone piperidine hydroxomates, CH4474, DPC333, DPH-067517, GM6001, GW3333, Ro 32-7315, TAPI-I , TAPI-2, and TMI 005); or an anti-idiotypic agent, such as monoclonal antibodies, LJP 394 (abetimus, RIQUENT®, La Jolla Pharmaceuticals). In other embodiments, the binding moiety is an interferon, as described herein. Binding moieties that can be conjoined to an USA linker of the invention include, e.g., interferon -beta (REBIF® (IFN-β-la), AVONEX® (TFN- β-l a), and BETASERON® (IFN- β-lb)), interferon-t (TAUFERONTM), interferon-alpha (e.g., ROFERON-A® (IFN-α-2a), INTRON-A® (IFN-α-2b), REBETR ON® (TFN- α-2b), ALFERON-N® (IFN-α-n3), PEG-INTRON® (IFN-α-2b covalently conjugated with monomethoxy polyethylene glycol), INFERGEN® (a non-naturally occurring type 1 interferon with 88% homology to IFN-α-2b), or PEGAS YS® (pegylated IFN-α-la)), and ACTIMMUNE® (IFN-g-lb).
The present invention further provides HSA linker conjugates with binding moieties that antagonize these pro-inflammatory molecules or their specific receptors to treat autoimmunity. Specific application of HSA linker conjugates of the invention for the diagnosis and treatment of MS and RA are described below.
Multiple Sclerosis
Multiple sclerosis (MS) is a neurological disease characterized by irreversible degeneration of the nerves of the central nervous system (CNS). Although the underlying cause is unclear, the neurodegeneration in MS is the direct result of demyelination, or the stripping of myelin, a protein that normally lines the outer layer and insulates the nerves. T cells play a key role in the development of MS. Inflamed MS lesions, but not normal white matter, can have infiltrating CD4+ T cells that respond to self antigens presented by MHC class II-linkcd molecules such as human HLA- DR2. The infiltrating CD4 T cells (THI cells) produce the pro-inflammatory cytokines 1L-2, IFN-γ, and TNF-α that activate antigcn-prcscnting cells (APCs) such as macrophages to produce additional pro-inflammatory cytokines (e.g., IL-I β, JL-6, 1L-8, and 1L-12. IL-12 induces further IFN-γ synthesis. The result is progressive demyelination of neuronal sheaths, leading to human disease. HSA linker conjugates can be used to aid in the diagnosis of MS. Diagnostic HSA linker conjugates that include binding moieties, as defined herein, that specifically target one or more (e.g., a bispecific HSA linker conjugate) immune cell activation markers (e.g., CD69, CD28, HLA-DR, and CD45). An imbalance of one or more of these pro-inflammatory or immune cell activation mediators relative to other factors or cells may be using measured by an HSA linker conjugate conjoined with a diagnostic agent (e.g., a radioisotope or fluorochrome). An HSA linker conjugate of the invention can be used to treat a person at risk of developing or suffering from MS or to prevent, ameliorate, or cure the symptoms of the disease. For example, binding moieties, as defined herein, that specifically target and antagonize α4 integrin (e.g., natalizumab), CD52 (e.g., alemtuzumab), CD80, P-selectin, sphingosine-1 -phosphate receptor- 1 (SlPRl), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CDl 1 (e.g., efalizumab), CDl 8, CD20 (e.g., rituximab), CD85, ICOS ligand, CCR2, CXCR3, or CCR5 can be useful when conjoined to an HSA linker of the invention for therapeutic use in a patient suffering from MS. Similary, binding moieties that neutralize type I interferons (e.g., interferons -alpha and -beta) or that antagonize type I interferon receptors (e.g., IFNaRl) can also be conjoined to an HSA linker of the invention for therapeutic application.
Rheumatoid arthritis
Rheumatoid arthritis (RA) is a chronic, inflammatory autoimmune disorder that causes the immune system to attack the joints. It is a disabling and painful inflammatory condition, which can lead to substantial loss of mobility due to pain and joint destruction. RA is a systemic disease, often affecting extra-articular tissues throughout the body including the skin, blood vessels, heart, lungs, and muscles.
Patients suffering from RA frequently have an increase in cellular expression of the HLA- DR4/DR1 cluster. HSA linker conjugates specific for one or both of these cell surface molecules are useful for the diagnosis of RA.
An HSA linker conjugate of the invention can be used to treat a person at risk of developing of suffering from RA to prevent, ameliorate, or cure the symptoms of the disease. For example, binding moieties, as defined herein, that specifically target and antagonize TNF-α (e.g., etanercept, infliximab, and adalimumab), IL-I (e.g., anakinra), or CTLA-4 (e.g., abatacept). Binding moieties that specifically target and deplete B cells (e.g., an anti-CD20 antibody, such as rituximab) can also be conjoined to the HSA linker described herein to treat or prevent RA.
Uveitis
Uveitis specifically refers to inflammation of the middle layer of the eye, but may refer to any inflammatory process involving the interior of the eye. Uveitis may be autoimmune or idiopathic in origin An HSA linker conjugate of the invention can be used to treat a person at risk of developing of suffering from autoimmune uveitis to prevent, ameliorate, or cure the symptoms of the disease. For example, alpha-fetoprotein (e.g., human AFP; NCBI Accession No. NM_001134), or biologically-active fragments thereof, can be conjoined to an HSA linker of the invention to reduce or eliminate inflammation associated with autoimmune or idiopathic uveitis. Kits
The invention provides kits that include a pharmaceutical composition containing an HSA linker of the invention, and one or more of a binding moiety (e.g., antibodies or antibody fragments), a diagnostic agent (e.g., radionuclide or chelating agents), and a therapeutic agent (e.g., cytotoxic or immunomodulatory agents) with reagents that can be used to conjugate them to the HSA linker, if necessary, and including a pharmaceutically-acceptable carrier, in a therapeutically effective amount for treating a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease).. The kits include instructions to allow a practitioner (e.g., a physician, nurse, or patient) to administer the composition contained therein. Preferably, the kits include multiple packages of the single-dose pharmaceutical composition(s) containing an effective amount of an HSA linker of the invention, or any binding (e.g., antibodies or antibody fragments (e.g., scFv)), diagnostic (e.g., radionuclide or chelating agents), and/or therapeutic (e.g., cytotoxic or immunomodulatory agents) conjugate thereof. Optionally, instruments or devices necessary for administering the pharmaceutical composition(s) may be included in the kits. For instance, a kit of this invention may provide one or more pre-filled syringes containing an effective amount of an HSA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto. Furthermore, the kits may also include additional components such as instructions or administration schedules for a patient suffering from a disease or condition (e.g., a cancer, autoimmune disease, or cardiovascular disease) to use the pharmaceutical composition(s) containing an USA linker of the invention, or any binding, diagnostic, and/or therapeutic agent conjugated thereto.
It will be apparent to those skilled in the art that various modifications and variations can be made in the compositions, methods, and kits of the present invention without departing from the spirit or scope of the invention. Thus, it is intended that the present invention cover the modifications and variations of this invention provided they come within the scope of the appended claims and their equivalents.
EXAMPLES
The following examples are provided by way of illustration only and not by way of limitation. Those of skill in the art will readily recognize a variety of non-critical parameters that could be changed or modified to yield essentially the same or similar results. Example 1: Methods to identify residues in the USA linker for site-specific conjugation of cytotoxic or cytostatic drugs.
To identify sites for specific conjugation of drug to HSA the crystal structure was studied and surface exposed serine and threonine residues were identified. These particular surface-exposed amino acids can then be mutated to cysteine allowing drug conjugation to the substituted cysteine using a thiol-specific conjugating agent such as maleimide. Mild reduction may be required prior to drug conjugation. The number of drugs conjugated is controlled by the number of surface exposed cysteine residues introduced into HSA. Serine and threonine are selected as the most suitable residues for mutation as they share the most structural identity with cysteine, however, other surface exposed residues may also be mutated to cysteine and successfully conjugated to cytostatic or cytotoxic drugs.
The crystal structure of HSA is deposited in the RSCB Protein Data Bank (lbmO - Sugio et al, "Crystal structure of human serum albumin at 2.5 A resolution," Protein Eng. 12:439-446 (1999)). This structure was analyzed using the Deep View Swiss PDB Viewer downloaded from the Swiss Institute of Bioinformatics. Serine and threonine residues with 50%, 40%, and 30% surface exposure were identified as the most suitable for mutation to cysteine (Table 2). Mutations can be introduced using standard molecular biology procedures. Conjugation of a thiol reactive drug or chelating agent to introduced cysteines can be tested using standard protein chemistry techniques.
Table 2
Figure imgf000068_0001
Example 2: Methods to identify residues in the HSA linker for introduction of asparagine-linked glycosylation sites. To identify regions for introduction of asparagine-linked glycosylation sites in HSA, the crystal structure was studied to identify surface exposed (>30%) asparagine, serine and threonine residues that would be suitable for mutation. Glycosylation occurs on asparagine residues when the consensus sequence asparagine - x - serine/threonine is present, where x cannot be a proline. Table 2 lists possible mutation sites in HSA for the introduction of asparagine-linked glycosylation.
Figure imgf000069_0001
*These mutations have also been reported to occur very rarely in HSA (Carlson et al, "Alloalbuminemia in Sweden: Structural study and phenotypic distribution of nine albumin variants," Proc.Nat.Acad.Sci. USA 89:8225- 8229 (1992); Madison el al, "Genetic variants of human serum albumin in Italy: point mutants and a carboxyl-terminal variant," Proc.Nat.Acad.Sci. USA 91 :6476-6480 (1994); Hutchinson et al, "The N-terminal sequence of albumin Redhill, a variant of human serum albumin," FEBS Lett. 193:211-212 (1985); Brennan et al, "Albumin Redhill (-1 Arg, 320 Ala-Thr): a glycoprotein variant of human serum albumin whose precursor has an aberrant signal peptidase cleavage site," Proc.Nat.Acad.Sci. USA 87:26- 30 (1990); Minchiotti el al, "Structural characterization of four genetic variants of human serum albumin associated with alloalbuminemia in Italy," Eur.J.Biochem. 247:476-482 (1997); Peach et al, "Structural characterization of a glycoprotein variant of human serum albumin: albumin Casebrook (494 Asp-Asn)," Biochim.Biophys.Acta 1097:49-54 (1991)).
Example 3 B2B3-1 is a bispecific scFv antibody fusion molecule consisting of B1D2, a human anti-
ErbB2 scFv antibody (SEQ ID NO:27) and H3, a human anti-ErbB3 scFv (SEQ ID NO:26). The two scFvs are joined by a modified human serum albumin (HSA) linker. The anti-ErbB3 scFv, 113, is recombinantly fused to the amino terminus of the HSA linker incorporating a short connector polypeptide and the anti-ErbB2 scFv, B1D2, is recombinantly fused to the carboxy terminus of the modified HSA linker incorporating an additional short connector polypeptide. Each connector polypeptide was selected based on protease resistance properties. The modified HSA linker contains two amino acid substitutions. A cysteine residue at position 34 of native HSA was mutated to serine in order to reduce potential protein heterogeneity due to oxidation at this site. An asparagine residue at amino acid 503 of native HSA, which in native HSA is sensitive to deamidation and can result in decreased pharmacologic half-life, was mutated to glutamine. B2B3-1 selectively binds ErbB2 over- expressing tumors by virtue of its high affinity anιi-ErbB2 scFv binding moiety, which has a kD in the range of 10.0 nM to 0.01 nM and more preferably a kD of about 0.3 nM. Subsequent binding of ErbB3 by the anti-ErbB3 scFv, which has a kD in the range of 50 to 1 nM and more preferably about 16 nM, prevents HRG induced phosphorylation of ErbB3. The modified HSA linker confers an extended circulating half-life on the bispecific molecule. B2B3-1 has a molecular weight of 119.6 kDa and is not glycosylated.
B2B3-1 inhibits ligand-induced phosphorylation of ErbB3 with sub-nanomolar potency by exploiting the abundant expression of its dimerization partner, ErbB2, to specifically target cancer cells that express both receptors.
Example 4
As shown in Figure 2, B2B3-1 variants inhibit HRG-induced pErbB3 in ZR75-1 breast cancer cells. ZR75-1 breast cancer cells were treated with a dose range of B2B3-1 variants for 24 hours followed by HRG stimulation. pErbB3 levels were measured in cell lysates and IC50 values were calculated together with the percent of inhibition. Shown are the mean IC50 values (Y axis) with error bars representing replicate experiments. Percent inhibition values are shown above the corresponding bar.
Example 5
Inhibition of phosphorylated ErbB3 (Figures 3A-D), AKT (Figures 4A-D), and ERK (Figures 5 A-D) following 24 hour pre-treatment with B2B3-1 variants A5-HSA-B1D2 (panel A of Figures 3- 5), H3-HSA-B1D2 (panel B of Figures 3-5), H3-HSA-F5B6H2 (panel C of Figures 3-5), and F4- HSA-F5B6H2 (panel D of Figures 3-5). BT474 breast cancer cells were treated with a dose range of B2B3-1 variants for 24 hours followed by FIRG stimulation. pErbB3, pAKT, and pERK levels were measured in cell lysates and IC50 values were calculated together with the percent of inhibition. Example 6
As shown in Figure 6, treatment of'BT474 breast tumor cells with B2B3-1 variants causes Gl cell cycle arrest and a decrease in the population of cells in S phase. BT474 cells were treated with 1 μM of B2B3-1 variants and controls for 72 hours. After the end of treatment, cells were trypsinized, gently resuspended in hypotonic solution containing propidium iodide and single cells were analyzed by flow cytometry. Cell cycle distribution in Gl and S phases was measured using curve-fitting algorithms designed for cell cycle analysis (FlowJo software cell cycle platform).
Example 7
B2B3-1 (SEQ ID NO: 16) inhibits ErbB3 activation, utilizing the abundant expression of its dimerization partner, ErbB2, to target tumor cells. A high affinity anti-ErbB2 scFv antibody, B1D2, facilitates targeting of B2B3-1 to tumor cells over-expressing ErbB2. B1D2 is connected by a modified HSA linker to a lower affinity anti-ErbB3 scFv antibody, H3, which blocks binding of ErbB3's ligand, HRG, thereby inhibiting ErbB3 phosphorylation and downstream AKT signaling. The ErbB2 binding scFv, B1D2, is derived from parent scFv C6.5, which possesses neither agonistic nor antagonistic activity. B 1D2, therefore, likely functions solely as a targeting agent. The lower affinity binding of the ErbB3 binding scFv prevents strong binding of B2B3-1 to normal, noncancerous tissues which express ErbB3 but little or no ErbB2, thereby reducing the potential for non- specific toxicity. In tumor cells expressing both ErbB2 and ErbB3, the avidity effect of bispecifϊc B2B3-1 binding to both receptors overcomes the low affinity of the ErbB3 scFv allowing strong inhibition of HRG interaction.
The ability of B2B3-1 to inhibit HRG binding to ErbB3 was investigated using flow cytometry (FACS). Cells of the breast cancer cell line BT-474-M3 (a variant of BT-474 that over- express ErbB2), were pretreated with 1 μM B2B3-1 then incubated with 10 nM biotinylated HRG l β EGF domain. After extensive washing, binding was assessed using streptavidin-AlexaFluor 647 conjugate. All incubations were performed at 4°C. Figure 7 shows that B2B3-1 is capable of blocking the binding of HRG to ErbB3. Example 8
After demonstrating B2B3-1 's ability to block HRG binding to ErbB3, we investigated the effect of B2B3-1 on ErbB3 signaling in vitro on two cell lines that express ErbB3 and over-express ErbB2. Breast cancer cell lines BT-474-M3 and ZR75-3 0 were serum starved overnight, pre-treated with a dose titration of B2B3-1 for 24 hours and then stimulated for 10 minutes with 5 nM of HRG lβ EGF domain. The phosphorylation status of ErbB3 and AKT was then examined using an ELISA assay. The results show that B2B3-1 inhibits HRG induced activation of both ErbB3 and AKT phosphorylation in a dose-dependent manner and with potent IC5os in both cell lines (Figures 8 A-D).
Example 9
Figure 9 shows the effect of B2B3-1 treatment on signaling proteins in BT474 breast cancer cells. Cells were treated with a dose range of B2B3-1 for 24 hours, followed by heregulin stimulation. Levels of pErbB2, pErbB3, pErk and pAKT and their corresponding total protein levels were determined on cell lysates by Western blot analysis.
Example 10
Figure 10 shows the immunoprecipitation-Western blot analysis of B2B3-1 treated B'1'474 breast cancer cells. Cells were treated with a dose range of B2B3-1 for 24 hours, followed by heregulin stimulation. ErbB2-associated complexes were isolated from cell lysates using an anti- ErbB2 antibody followed by Western blot analysis to detect pErbB2 and pErbB3 and their corresponding total protein levels.
Example Il
The anti-tumor activity of B2B3-1 was investigated in vitro using a number of assays. In the first assay, the effect of B2B3-1 on the accumulation of BT-474 or SKBR3 cells in Gl phase and the concomitant decrease in S phase of the cell cycle was examined. Briefly, cells were treated with 1 μM B2B3-1 or PBS vehicle for 72 hours. After the end of treatment, cells were trypsinized, gently resuspended in hypotonic solution containing propidium iodide and single cells were analyzed by flow cytometry. Cell cycle distribution in Gl and S phases was measured using curve -fitting algorithms designed for cell cycle analysis (FlowJo software cell cycle platform). B2B3-1 was found to modestly decrease the percentage of cells in S phase and increase the population of cells in Gl phase (Figure 1 IA). In a second experiment, the number of cell colonies formed following treatment with B2B3-1 was studied. BT-474 and SKBR3 breast cancer cells were plated in the presence of 1 μM B2B3-1 and compared to cells plated in media only. Media only or media including treatment was replenished every 3 days. After 14 days the number of colonies were counted and compared to untreated cells. Figure 1 IB illustrates the 40-45% decrease in the number of colonies formed when cells are treated with B2B3-1 compared to control cells. Finally, the ability of B2B3-1 to inhibit cell proliferation was assessed in a cell impedance assay using a Real-Time Cell Electronic Sensing System (RT-CES: ACEA Biosciences). BT- 474 cells were seeded on plates integrated with microelectronic sensor arrays and treated with a dose titration of B2B3-1 or media only for 72 hours. Data reflecting the generation of cell-electrode impedance response was collected every hour for 72 hours and IC50 values were calculated 68 hours after treatment. Figure 1 1C illustrates that B2B3-1 was able to inhibit impedance of BT-474 cells with an IC50 of 33 nM.
Example 12 We also investigated whether B2B3-1 exhibits agonistic activity based on its ability to simultaneously bind and cross-link ErbB2 and ErbB3 receptors. Serum starved ZR75-1 breast cancer cells were incubated with 1 μM B2B3-1 or PBS vehicle for 24 hours. Cells were also treated with B2B3-1 or PBS vehicle for 24 hours followed by a 10-minutc stimulation with 5 nM HRG lβ EGF domain. Cells were lysed and the pErbB3 content of the lysates was assessed by ELlSA. Figure 12 shows that cells treated with B2B3-1 alone contained comparable levels of phosphorylated ErbB3 as untreated cells, indicating that B2B3-1 is non-agonistic.
Example 13
The ability of B2B3-1 to bind with specificity to ErbB2 and ErbB3 and not to related ErbB family members, EGFR and ErbB4, was investigated by ELISA. Plates were coated with the recombinant extracellular domain of either ErbB2 or ErbB3. Plates were blocked and incubated with a half-maximal binding concentration of B2B3-1 in the presence of a dilution series of competing recombinant extracellular domains of EGFR, ErbB2, ErbB3 or ErbB4. The results show only soluble ErbB2 extracellular domain blocked B2B3-1 binding to ErbB2-coated plates (Figure 13A). Likewise, only soluble ErbB3 extracellular domain blocked B2B3-1 binding to ErbB3-coated plates (Figure 13B). These results demonstrate the specificity of the anti-ErbB2 arm B1D2 for ErbB2, and of the anti-ErbB3 arm H3 for ErbB3. The increased signal observed when soluble ErbB2 extracellular domain was incubated with B2B3-1 on the ErbB3 coated plate is assumed to be due to formation of an ErbB2, ErbB3, B2B3-1 complex on the plate.
Example 14
The ability of B2B3-1 to bind avidly to tumor cells expressing both ErbB2 and ErbB3 was studied. SKO2 and SKO3 are variants of B2B3-1 that lack the ability to interact with ErbB2 or ErbB3, respectively. MALME-3M melanoma cells, which express approximately equal numbers of ErbB2 and ErbB3 receptors, were incubated with a dilution series of B2B3-1, SKO2, or SKO3 in the presence of saturating concentrations of a goat anti-HSA Alexafluor-647 conjugated antibody. Cell binding was assessed by flow cytometry and apparent binding affinities were determined for each molecule. Control cells were incubated with secondary antibody alone. No measurable cell binding was observed for SKO2, which retains only low affinity binding to ErbB3 and lacks ErbB2 binding activity. SKO3, which retains a functional, high affinity ErbB2 binding scFv but lacks the ability to bind ErbB3 had a Kn of 6.7 nM. B2B3-1 bound cells with a KD of 0.2 nM, demonstrating avidity binding of this bispecific molecule (Figure 14).
Example IS
The stability of B2B3-1 under physiological conditions was assessed by incubating 100 nM B2B3-1 in human, Cynomolgus monkey, or mouse serum at 37°C for a period of 120 hours.
Samples were removed at 0, 24, 48, 72, 96 and 120 hours and the ability of B2B3-1 to bind both ErbB2 and ErbB3 was measured by ELISA. This ELISA involves coating a 96-well plate with recombinant ErbB2 extracellular domain overnight followed by a blocking step and then incubation with a dilution series of B2B3-1. Plates are then incubated with an Fc-ErbB3 extracellular domain fusion protein followed by a goat antihuman-Fc-HRP conjugate. Plates are developed by addition of supersignal chemiluminescense substrate. Figures 15A-C show that B2B3-l remains stable in serum from all three species under physiological conditions, retaining comparable ability to bind both ErbB2 and ErbB3 at all time points measured. Example 16: B2B3-1 dose response in BT-474-M3 breast cancer xenograft model.
The efficacy of B2B3-1 in vivo was assessed using nude mice bearing BT-474-M3 xenografts. Ten mice per group were treated with 12 doses of 0.3, 1, 3, 10, 30 or 90 mg/kg of B2B3- 1 every 3 days. Control groups were administered PBS vehicle or HSA at an equimolar dose to the 90 mg/kg B2B3-1 dose. All doses were administered interperitoneally (i.p.). Tumor size was measured twice a week and the corresponding tumor volume was calculated. The results show that B2B3-1 treatment leads to significant reduction in BT-474-M3 tumor size as compared to the control group (Figure 16). Complete regressions were observed in each of the B2B3-1 treatment groups except mice treated with the lowest dose of B2B3-1 (0.1 mg/kg).
Example 17
As shown in Figures 17A-E, B2B3-1 is effective in multiple xenograft models in an ErbB2 dependent manner. B2B3-1 was efficacious in the Calu-3 (Figure 17A), SKO V-3 (Figure 17B), NCI-N87 (Figure 17C), and MDA-MB-361 (Figure 17E) xenograft models expressing ErbB2 at > 1 x 105 receptors/cell but worked less well in the ACHN (Figure 17D) xenograft model which expresses 4.5 x 10 ErbB2 receptors/cell. Mice were treated with 30 mg/kg of B2B3-1 every 3 days.
Example 18
Over-expression of ErbB2 converts B2B3-1 non-responder ADRr breast cancer xenograft model into a responder to B2B3-1 (Figures 18A B). ErbB2 was over-expressed in ADRr breast cancer cells using a retroviral expression system. Transfected cells expressing high levels of ErbB2 (ADRr -E2) were selected using FACS and subsequently injected subcutaneously into nude mice to establish xenograft tumors. Mice were treated with 30 mg/kg of B2B3-1 every 3 days. While no response to B2B3-1 was observed in wild type ADRi- xenografts (Figure 18A), ADRr-E2 xenografts (Figure 18B) responded to B2B3- 1.
Example 19
As shown in Figures 19A-B, B2B3-1 activity correlates positively with ErbB2 expression levels in vitro (Figure 19A) and in vivo (Figure 19B). B2B3-1 inhibition of ErbB3 phosphorylation was determined in 9 tumor cell lines with expression levels of ErbB2 ranging from 5 x 104 receptors/cell to 2.4 x 106 receptors/cell using an ELlSA assay. The extent of B2B3-l 's ability to inhibit ErbB3 phosphorylation to basal levels (% pErbB3 inhibition) was found to correlate positively with ErbB2 expression levels. Similarly, B2B3-1 activity was assessed in 10 tumor xenograft models expressing low to high levels of ErbB2. Xenograft response also correlated positively with ErbB2 expression levels.
Example 20
B2B3-1 treatment of BT474-M3 breast tumor cells results in translocation of p27kφl to the nucleus (Figure 20A). BT474-M3 cells were treated with 1 μM of B2B3-1 for 6 hours. The subcellular location of p27kipl was assessed using immunofluorescence techniques. In cells treated with B2B3-1, p27 ipl translocated to the nucleus, which has been shown to result in inhibition of cell proliferation. p27kφl remained in the cytoplasm of untreated cells.
To further study the effect of B2B3-1 on the cell cycle, BT-474-M3 cells treated with B2B3-1 for 72 hours were probed for the cell cycle regulator Cyclin Dl using Western blot analysis (Figure 20B). The cytoskeleton protein vinculin was used as a protein loading control in this experiment. B2B3-1 treatment resulted in a decrease in the levels of Cyclin Dl compared to untreated cells.
Example 21
As shown in Figures 21A-B, B2B3-1 treatment of BT474-M3 breast tumor xenografts results in translocation of p27kipl to the nucleus. BT474 breast tumor xenografts were treated with B2B3-1 (Figures 21A) at a dose of 30 mg/kg or an equimolar dose of USA (Figures 21B) every 3 days for a total of 4 doses. Increased nuclear staining for p27kipl was observed in B2B3-1 treated tumors compared to HSA control tumors indicating an anti-proliferative effect of B2B3-1 in vivo.
Example 22 B2B3-1 treatment results in a reduction of the proliferation marker Ki67 in BT474 breast cancer xenograft tumors. BT474-M3 breast tumor xenografts were treated with B2B3-1 (Figure 22A) at a dose of 30 mg/kg or an equimolar dose of HSA (Figure 22B) every 3 days for a total of 4 doses.
Subsequent staining of tumor sections for Ki67 demonstrated a reduced expression pattern for B2B3-
1 treated tumors compared to HSA treated tumors. Example 23
B2B3-1 treatment results in a reduction of vessel density in BT474-M3 breast cancer xenograft tumors, as determined by assaying for CD31 expression (Figures 23A-B). BT474 breast tumor xenografts were treated with B2B3-1 (Figure 23A) at a dose of 30 mg/kg or an equimolar dose of HSA (Figure 23B) every 3 days for a total of 4 doses. Tumors were stained for the presence of vascular marker CD31. Tumors treated with B2B3-1 show a marked decrease in vessel density compared to control tumors treated with HSA.
Example 24: B2B3-1 inhibits phosphorylation ofErbB3 in vivo. BT-474-M3 xenograft tumors were treated with 30 mg/kg B2B3-1 or 17.5 mg/kg HSA every 3 days for a total of 4 doses and tumors were harvested 24 hours after the final dose. Tumors were lysed and subjected to SDS-PAGE followed by Western analysis to assess relative levels of phosphorylation of B2B3-1 's target ErbB3. Equal quantities of protein were loaded in each lane and total protein levels were controlled by probing for beta tubulin. Western blot analysis using antibodies specific for phosphorylated ErbB3 show that B2B3-1 treated tumors contain less pErbB3 than HSA treated tumors (Figure 24A). Densitometry of the western blot analysis followed by normalization of the mean pErbB3 integral band intensity to the mean beta tubulin integral band intensity demonstrated that B2B3-1 treated tumors contained significantly less pErbB3 than control HSA treated tumors (Figure 24B). These data confirmed that B2B3-1 inhibits phosphorylation of its target ErbB3 in vivo.
Example 25: In vivo activity ofB2B3-l in BT-474-M3 xenografts which have reduced PTEN activity.
ShRNA technology was applied to knock out the activity of the tumor suppressor gene phosphatase and tensin homolog (PTEN) in BT-474-M3 breast cancer cells. Briefly, cultured
BT-474-M3 cells were transfected with shPTEN or shControlRNA by retroviral transfection.
Transfected cells with reduced PTEN were selected using FACS and subsequently injected subcutaneously into the right flank of nude mice to establish xenograft tumors. Cells transfected with a control vector were injected into the left flank of the same mouse. Mice were treated with 30mg/kg B2B3-1 every 3 days or 10mg/kg Herceptin every week. HSA was injected as a control at an equimolar dose to B2B3-1. All injections were done i.p. B2B3-1 and Herceptin promoted a reduction in the size of tumors formed by control BT- 474-M3 breast cancer cells (Figure 25A), whereas only B2B3-1 (and not Herceptin) promoted a reduction in the size of tumors formed by BT-474-M3 breast cancer cells lacking expression of PTEN (Figure 25B).
Example 26: B2B3-1 inhibits ErbB3 signaling in BT-474-M3 breast cancer cells having reduced PTEN activity.
The ability of B2B3-1 to inhibit phosphorylation of ErbB3 signaling in tumor xenografts was studied using the PTEN deficient BT-474-M3 model. Xenograft tumors of the engineered cell line or control cell line were treated with 30 mg/kg B2B3-1, 17.5 mg/kg HSA every 3 days or 10 mg/kg Herceptin weekly and tumors were harvested 24 hours after the final dose. Tumors were lysed and subjected to SDS-PAGE followed by Western analysis to assess relative levels of phosphorylation of B2B3-1 's target ErbB3, AKT and total PTEN levels. Equal quantities of protein were loaded in each lane and total protein levels were controlled by probing for PCNA. Western blot analysis using antibodies specific for phosphorylated ErbB3 show that B2B3-1 treated tumors contain less pAKT than HSA treated or Herceptin treated tumors (Figure 26A). Densitometry of the western blot analysis followed by normalization of the mean pAKT integral band intensity to the mean PCNA integral band intensity demonstrated that B2B3-1 treated tumors contained significantly less pAKT than control HSA treated and Herceptin-treated tumors (Figure 26B).
Example 27
The pharmacokinetic parameters for B2B3-1 were investigated in nu/nu mice. Animals were randomized into groups and administered intravenous (IV) with a single dose of 5, 15, 30, or 45 mg/kg B2B3-1 (Figures 27A-D, respectively). Blood was collected pre-dose and at 0.5, 4, 8, 24, 48, 72, and 120 hours post dose. Three mice were used for each time point. Serum levels of B2B3-1 were measured using two ELISA methods. The first method requires functional binding of B2B3-1 to both ErbB2 and ErbB3 while the second method measures only the USA component of B2B3-1 in the serum. The HSA ELISA utilizes a polyclonal-anti HSA capture antibody and a HRP-conjugated polyclonal anti-HSA detection antibody. A reduction in B2B3-1 serum concentration measured using the ErbB2/ErbB3 binding method versus the HSA method would indicate a loss in functional B2B3-1. Figures 27 A-D show that the pharmacokinetic properties of B2B3-1 are comparable when assessed using either ELlSA method, indicating that B2B3-1 is stable in circulation in mice.
Example 28 B2B3-1 serum concentrations were fit using a two-compartment, biexponential model and showed biphasic disposition. Terminal half-lives were calculated to be 17, 16, 23, and 18 hrs for the 5, 15, 30, or 45 mg/kg doses, respectively, and are shown in Table 4. Increases in B2B3-1 dose resulted in a linear increase in exposure (Figure 28).
Table 4: Pharmacokinetic properties of B2B3-1 in mice and Cynomolgus monkeys.
Figure imgf000079_0001
Example 29 Blood samples for pharmacokinetic analysis were also obtained from a dose range-finding toxicology study in female Cynomolgus monkeys. In this study, animals were infused with 4, 20 or 200 mg/kg of B2B3-1 administered every 3 days for 4 doses. Sampling occurred prior to and 5 minutes after dosing on each dosing day (study days 1, 4, 7 and 10) to provide pre-dose and peak/trough concentrations, and at 1, 2, 4, 8, 24 and 48 hours after the end of the first infusion on day 1 and at 1, 2, 4, 8, 24, 48, 72 and 120 hours after the last infusion on day 10. For recovery animals dosed at 200 mg/kg serum samples were also collected at 168, 336 and 456 hours after the last infusion. Cynomolgus monkey serum samples were assayed using the ErbB2/ErbB3 ELISA method described previously. Serum concentrations for each dose over the time course are shown in Figure 29. The analysis showed that mean concentration-time profiles for serum B2B3-1 after dosing on days 1 and 10 were qualitatively similar with concentrations generally declining with time from Cmax. Mean half-life estimates ranged from 38.3-67.2 hours on day 1 and 45.0 to 121.0 hours on day 10 (Table 4).
Example 30
The plasmid encoding the B2B3-1 bispecific scFv antibody fusion protein was created combining gene sequences of a unique human anti-ErbB3 scFv (designated "H3"), a human anti- ErbB2 scFv (designated "B1D2"), and a modified human serum albumin (HSA) linker. The anti- ErbB3 scFv, H3, is recombinantly linked to the amino terminus of the HSA linker via a connecting peptide (Ala-Ala-Ser) and the anti-ErbB2 scFv, B 1D2, is genetically linked the carboxy terminus of the HSA linker via a connecting peptide (Ala-Ala- Ala-Leu). The peptide connectors were formed through the introduction of restriction sites during construction of the mammalian expression vector and were synthesized with optimized codon usage for mammalian expression together with the single chain antibody fragments and HSA linker.
The B1D2 scFv was selected from a combinatorial phage display library created by mutagenesis of the ErbB2-binding scFv C6.5, which was selected from a non-immune phage display library. The H3 scFv was selected from a non-immune phage display library originally made by Sheets et al. The gene sequences encoding the B1D2 and H3 single chain antibody fragments were optimized for CHO cell codon preferences and synthesized for subsequent construction of the B2B3- 1 encoding plasmid.
The modified HSA linker contains two amino acid substitutions. A cysteine residue at position 34 was mutated to serine in order to reduce potential protein heterogeneity due to oxidation at this site. An asparaginc residue at amino acid 503 was mutated to glutamine, which in wild type HSA is sensitive to deamination and can result in decreased pharmacologic half-life. The gene sequence encoding the modified HSA linker was synthesized with optimized codon usage for mammalian expression for subsequent construction of the B2B3-1 encoding plasmid.
Example 31 The B2B3-1 coding sequence was cloned into pMPlOk base vector using standard molecular biology techniques to create plasmid pMP10k4H3-mHSA-BlD2, shown in Figure 30. For the most part this construct employs commonly used genetic elements. B2B3-1 expression is driven by the human GAPD promoter. This vector utilizes genetic elements referred to as Matrix Attachment Regions or MAR elements. The MAR genetic elements control the dynamic organization of chromatin, and insulate nearby genes from the effect of surrounding chromatin thereby increasing copy number dependent, position-independent, expression of genes. MAR elements have been shown to improve the probability of isolating a clone exhibiting the desired level of expression for the production of a recombinant protein and to increase the stability of production. The MAR elements used in the B2B3-1 constructs are non-coding human MAR elements. In addition to the B2B3-1 plasmid, a neomycin antibiotic resistance plasmid (Figure 31) and a hygromycin resistance plasmid (Figure 32) were also used to select for stable transformants.
Example 32: First round of Gene Transfection
Chinese Hamster Ovary CHO-Kl cells were purchased from ATCC (ATCC # CCL-61). The CHO-Kl cell line is a serum and proline dependent adherent sub-clone of the parental CHO cell line created by T.T. Puck. The CHO-Kl cells used for B2B3-1 transfection were pre-adapted for suspension growth in serum free media prior to transfection. An iterative transfection procedure was used to develop the B2B3-1 cell line. Twenty-four hours before transfection, CHO-Kl cells were sub passaged to 1.OxIO6 cells/mL in SFM4CHO (Serum Free) medium (HyClonc, Logan, UT) supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. On the day of transfection, cells were resuspended in OptiMEM medium (Invitrogen Corp, Carlsbad, CA) and 40,000 cells were placed in each well of a twenty- four well plate. In the first transfection, the B2B3-1 expression plasmid (pMP10k4H3-mHSA-BlD2) and the neomycin resistance plasmid (Figure 30; pSV2-neo (Selexis, Inc., Marlborough, MA) were mixed together using a molar plasmid ratio of 75: l (B2B3-l :neomycin resistance). The plasmid mixture was subsequently mixed with a cationic lipid transfection reagent (Lipofectamine LTX, Invitrogen Corp, Carlsbad, CA) and lipid/DNA complexes were allowed to form for thirty minutes. The DNA/Lipid complex was than added to the CHO-Kl cells and the 24-well plates were placed in a 37°C, 5% CO2 incubator.
Example 33: Selection and Screening for High Producers The contents of each transfection well were washed with PBS, trypsinized and distributed across two, ninety-six well plates. The growth media used consisted of DMEM/F12 (Invitrogen Corp, Carlsbad, CA) with 10% FBS (Invitrogen Corp, Carlsbad, CA) and 500 mg/L of geneticin (G418; Invitrogen Corp, Carlsbad, CA). Media in the 96-well plates was changed on day 4 to SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, 0.016 mM thymidine, and 500mg/L geneticin. Following an additional two weeks of culture in selection medium, surviving cells had formed well-defined colonies. The clones were evaluated using quantitative spot blot techniques. The top producing colonies were trypsinized, and expanded to a single well of a 24-well plate.
A seven day productivity assay was used to screen for high B2B3-1 producing colonies. Upon expansion the cells in 24-well plates were allowed to proliferate for seven days in SFM4CHO medium supplemented with 8 mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. The B2B3-1 concentration in the spent media was determined. Top clones from the 24- well scale were expanded into 125 mL baffled shake flasks. A seven day study in the shake flask in SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine was used to screen the cell pools for growth and B2B3-1 production.
Example 34: Second Round of Gene Transfection
The highest producing cell pool determined from the first round of transfection {supra) was transfected a second time to increase production. Twenty-four hours before transfection, the cell pool was sub passaged to 1.0x106 cells/mL in SFM4CHO (Serum Free) medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. On the day of transfection, cells were resuspended in OptiMEM medium (Invitrogen Corp, Carlsbad, CA) and 40,000 cells were placed in each well of a twenty-four well plate. In the first transfection, the B2B3- 1 and hygromycin resistance plasmid (Figure 32; pTK-Hyg (Clontech, Mountain View, CA)) were mixed together using a molar plasmid ratio of 50:1 (B2B3-1 :hygromycin resistance). The plasmid mixture was subsequently mixed with a cationic lipid transfection reagent (Lipofectamine LTX, Invitrogen Corp) and lipid/DNA complexes were allowed to form for thirty minutes. The DNA/Lipid complex was than added to the cell pool and the 24-well plates were placed in a 370C, 5% CO2 incubator.
Example 35: Selection and Screening for High Producers From Second Transfection
The contents of each transfection well were washed with PBS, trypsinized and distributed across two, 96-well plates. The growth media used consisted of DMEM/F12 supplemented with 10% FBS and 400 mg/L of hygromycin B (Invitrogen Corp). Media in the 96-well plates was changed on day 4 to Hyclone SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, 0.016 mM thymidine , and 400 mg/L of hygromycin B. After an additional two weeks of selection, surviving cells had formed well-defined colonies. The clones were evaluated using quantitative spot blot techniques. The top producing colonies were trypsinized, and expanded to a single well of a 24-well plate.
A seven day productivity assay was used to screen for high B2B3-1 producing colonies. Upon expansion the cells were allowed to proliferate for seven days, and the B2B3-1 concentration in the spent media was determined.
Top clones from the 24-well plates were expanded into 125 mL baffled shaker flasks in the Hyclone SFM4CHO medium supplemented with 8mM L-glutamine, 0.1 mM sodium hypoxanthine, and 0.016 mM thymidine. A seven day study in shake flask was used to screen the cell pools for growth and B2B3-1 production. The spent media was quantitated using Protein Aresin and an HPLC instrument.
Example 36: Limiting Dilution Cloning
The best growing and highest B2B3-1 -producing colony identified by the productivity assay was transferred from the 125 mL shaker flask and plated in five 96-well plates at a cell concentration calculated to give one cell/well. The 96-well plates were placed in an incubator at 370C and 5% CO2. The wells were examined bi-weekly to track formation of colonies. Colonies arising from a single cell were identified based on the symmetrical shape of the colony. Wells containing such colonies were marked for further screening by 24-well 7-day assessment, and 125mL shaker flask 7- day assessment. The second round of limiting dilution cloning was performed in a similar manner to the first round. An additional 100 mL fed batch evaluation was performed to confirm clone choice. A pre- seed bank was cryopreserved.
Example 37: Formulation ofB2B3-l
B2B3-1 can be administered once a week via intravenous infusion over a period of 60 or 90 minutes, depending on patient tolerability. B2B3-1 can be formulated in a sterile 20 mM L- histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human).
Example 38: Treatment of Breast Cancer
An HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16) can be administered to a patient diagnosed with breast cancer. For example, a patient whose cancer is diagnosed as expressing high levels of epidermal growth factor receptors, such as ErbB2 (HER2/neu) can be treated with an HSA linker conjoined to an ErbB2 biding moiety. A physician providing care to a patient diagnosed with breast cancer can administer an HSA linker of the invention suitable and capable of providing the best therapeutic benefit to the patient. Selection of, for example, the binding moieties, conjoined to an HSA linker of the invention can be based on clinical determinants of the patient and specific cancer variant. For example, genotypic or histologic screens of cancer biopsies can reveal increased expression of ErbB2, indicating that an HSA linker of the invention that incorporates and anti-ErbB2 binding moiety (e.g., B2B3-1) can be used therapeutically.
In one embodiment of the invention, B2B3-1 can be administered to a patient diagnosed with breast cancer once a week via intravenous infusion over a period of, e.g., 60 or 90 minutes, depending on patient tolerability. B2B3-1 can be formulated in a sterile 20 mM L-histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human). A clinician supervising the administration of B2B3-1 or any other HSA linker of the invention can follow common formulation and dosing practices to determine the proper course of therapy for any given patient. The invention further provides for the co-administration of one or more therapeutic drugs or compounds in combination with the HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16), such as the common chemotherapeutic regimen for the treatment of breast cancer includes doxorubicin, cyclophosphamide, and paclitaxel. Alternatively, a clinician can administer the HSA linker of invention (e.g., B2B3-1) in combination with surgical or radiation therapy to treat breast cancer in a patient in need thereof.
Example 39: Treatment of Ovarian Cancer
An HSA linker of the invention can be administered to a patient diagnosed with ovarian cancer (ovarian carcinoma), for example, a patient whose cancer is diagnosed as expressing high levels of epidermal growth factor receptors, such as ErbB2 (HER2/neu) can be treated with an HSA linker conjoined to an ErbB2 biding moiety. A physician providing care to a patient diagnosed with ovarian cancer can administer an HSA linker of the invention suitable and capable of providing the best therapeutic benefit to the patient. Selection of, for example, the binding moieties, conjoined to an HSA linker of the invention can be based on clinical determinants of the patient and specific cancer variant. For example, genotypic or histologic screens of cancer biopsies can reveal increased expression of ErbB2 or other targeting molecules (e.g., overexpressed receptors or ligands specific to the cancer), which can be targeted by an HSA linker of the invention that incorporates an anti-ErbB2 binding moiety (e.g., B2B3-1) or other target specific binding moiety.
In one embodiment of the invention, B2B3-1 can be administered to a patient diagnosed with ovarian cancer once a week via intravenous infusion over a period of, e.g., 60 or 90 minutes, depending on patient tolerability. B2B3-1 can be formulated in a sterile 20 mM L- histidine hydrochloride, 150 mM sodium chloride, pH 6.5 solution at a concentration of 25mg/mL for administration to a patient (e.g., a human). A clinician supervising the administration of B2B3-1 or any other HSA linker of the invention for the treatment of ovarian cancer can follow common formulation and dosing practices (e.g., intraperitoneal injection) to determine the proper course of therapy for any given patient.
The invention further provides for the co-administration of one or more therapeutic drugs or compounds in combination with the HSA linker of the invention (e.g., B2B3-1 ; SEQ ID NO: 16). Alternatively, a clinician can administer an HSA linker of invention in combination with surgical or radiation therapy to treat ovarian cancer in a patient in need thereof. Example 40
HSA linker conjugates of the invention can be constructed using one or more of the elements (groups A-E) listed in Table 5 below. In particular, an HSA linker of the invention, which is shown as Group C in Table 5 below, can incorporate one or more binding moieties selected from groups A and E shown in Table 5. In addition, the HSA linker conjugates can also include one or more peptide connectors, which are selected from groups B and D in Table 5, at each of the amino and carboxy terminal ends of the HSA linker. Peptide connectors can be repeated or truncated to increase or decrease the length of the connector sequence.
The invention provides specific embodiments of the HSA linkers, polypeptide connectors, and binding moieties discussed above. Table 6 lists ten HSA linker conjugates with varying ErbB2- specific or ErbB3-specifϊc binding moieties, as well as polypeptide connectors, at the amino and carboxy termini of an HSA linker of the invention.
Table 6
Figure imgf000086_0001
APPENDIX A SEQUENCE LISTINGS
SEQ ID NO :1
Human Serum Albumin (HSA) Linker with C34S and N503Q substitutions ("mHSΛ") Amino Acid Sequence
DAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKL VNEVTEF AKTCVADESAE NCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEV DVMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLP KLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAEVSKL VTDLTK VHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPAD LPSLAADFVESKDVCKNYAEAKD VFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCC AAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALL VRYTKK VPQVSTPT LVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLV NRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIKKQTAL VEL VKHKPKATKEQL KA VMDDFAAFVEKCCKADDKETCFAEEGKKL V AASQAALGL
SEQ ID NO:2
Human Serum Albumin (HSA) Linker w/C34S and N503Q substitutions ("mHSA") Nucleotide Sequence
GACGCTCACAAGAGCGAAGTGGCACATAGGTTCAAAGATCTGGGCGAAGAGAACTTTA
AGGCCCTCGTCCTGATCGCTTTCGCACAGTACCTCCAGCAGTCTCCCTTTGAAGATCAC
GTGAAACTGGTCAATGAGGTGACCGAATTTGCCAAGACATGCGTGGCTGATGAGAGTG CAGAAAACTGTGACAAATCACTGCATACTCTCTTTGGAGATAAGCTGTGCACCGTCGCC ACACTCAGAGAGACTTATGGGGAAATGGCTGACTGTTGCGCAAAACAGGAGCCTGAAC GGAATGAGTGTTTCCTCCAGCACAAGGATGACAACCCAAATCTGCCCCGCCTCGTGCGA CCTGAGGTCGATGTGATGTGCACCGCCTTTCATGACAACGAAGAGACATTCCTGAAGA AATACCTGTATGAAATTGCTCGTAGGCACCCATACTTTTATGCCCCCGAGCTCCTGTTCT TTGCAAAGAGATACAAAGCTGCCTTCACTGAATGTTGCCAGGCAGCTGATAAGGCCGC ATGTCTCCTGCCTAAACTGGACGAGCTCCGGGATGAAGGTAAGGCTTCCAGCGCCAAA CAGCGCCTGAAGTGCGCTT CTCTCCAGAAGTT TGGCGAGCGAGCA TTCAAAGCCTGGGC TGTGGCCCGTCTCAGTCAGAGGTTTCCAAAGGCAGAATTTGCTGAGGTCTCAAAACTGG TGACCGACCTCACAAAGGTCCATACTGAGTGTTGCCACGGAGATCTGCTGGAATGTGCC GACGATAGAGCAGACCTCGCTAAATATATCTGCGAGAATCAGGATTCCATTAGCTCTAA GCTGAAAGAATGTTGCGAGAAGCCCCTCCTGGAAAAGAGTCATTGTATCGCCGAGGTG GAAAACGACGAGATGCCAGCAGATCTGCCATCACTCGCTGCCGACTTTGTGGAATCCΛ AAGATGTCTGCAAGAATTACGCAGAGGCTAAAGACGTGTTCCTGGGGATGTTTCTGTAT GAGTACGCCCGGCGTCACCCCGATTATAGCGTCGTGCTCCTGCTCCGACTGGCAAAGAC CTACGAAACAACTCTGGAGAAATGTTGCGCTGCCGCAGACCCTCATGAATGTTATGCTA AGGTGTTCGATGAGTTTAAGCCACTCGTCGAAGAGCCCCAGAACCTGATTAAACAGAA TTGCGAACTGTTCGAGCAGCTCGGTGAATACAAGTTTCAGAACGCCCTGCTCGTGCGTT ATACCAAAAAGGTCCCTCAGGTGTCTACACCAACTCTGGTGGAGGTCAGTAGGAATCT GGGCAAAGTGGGATCAAAGTGTTGCAAACACCCCGAGGCAAAGAGAATGCCTTGTGCT GAAGATTACCTCTCCGTCGTGCTGAACCAGCTCTGCGTGCTGCATGAAAAGACCCCAGT
CAGCGATCGGGTGACAAAATGTTGCACCGAATCTCTGGTCAATCGCCGACCCTGTTTCA
GTGCCCTCGAAGTGGACGAAACTTATGTGCCTAAGGAGTTTCAGGCTGAAACATTCACC
TTTCACGCCGATATCTGCACTCTGTCCGAGAAAGAAAGGCAGATTAAGAAACAGACAG
CACTGGTCGAGCTCGTGAAGCATAAACCAAAGGCTACCAAGGAGCAGCTGAAAGCCGT
CATGGACGATTTCGCAGCTTTTGTGGAAAAGTGTTGCAAAGCCGACGATAAGGAGACT
TGTTTCGCAGAAGAGGGGAAAAAGCTCGTGGCTGCCAGCCAGGCAGCTCTGGGTCTG
SEQ ID NO:3
Human Serum Albumin (HSA) Amino Acid Sequence
DAHKSEV AHRFKDLGHENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVADESAE NCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEV DVMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFF AKRYKAAFTECCQAADKAACLLP KLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAEVSKL VTDLTK VHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPAD LPSLAADFVESKDVCKNYAEAKDVFLGMFL YEYARRFIPDYSVVLLLRLAKTYETTLEKCC AAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALL VRYTKKVPQVSTPT LVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLV NRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTAL VEL VKHKPKATKEQL KA VMDDFAAFVEKCCKADDKETCFAEEGKKL V AASQAALGL
SEQ ID NO:4
Human Serum Albumin (HSA) Nucleotide Sequence
GATGCACACAAGAGTGAGGTTGCTCATCGGTTTAAAGATTTGGGAGAAGAAAATTTCA AAGCCTTGGTGTTGATTGCCTTTGCTCAGTATCTTCAGCAGTGTCCATTTGAAGATCATG TAAAATTAGTGAATGAAGTAACTGAATTTGCAAAAACATGTGTAGCTGATGAGTCAGC TGAAAATTGTGACAAATCACTTCATACCCTTTTTGGAGACAAATTATGCACAGTTGCAA CTCTTCGTGAAACCTATGGTGAAATGGCTGACTGCTGTGCAAAACAAGAACCTGAGAG AAATGAATGCTTCTTGCAACACAAAGATGACAACCCAAACCTCCCCCGATTGGTGAGA CCAGAGGTTGATGTGATGTGCACTGCTTTTCATGACAATGAAGAGACATTTTTGAAAAA ATACTTATATGAAATTGCCAGAAGACATCCTTACTTTTATGCCCCGGAACTCCTTTTCTT TGCTAAAAGGTATAAAGCTGCTTTTACAGAATGTTGCCAAGCTGCTGATAAAGCTGCCT GCCTGTTGCCAAAGCTCGATGAACTTCGGGATGAAGGGAAGGCTTCGTCTGCCAAACA GAGACTCAAATGTGCCAGTCTCCAAAAATTTGGAGAAAGAGCTTTCAAAGCATGGGCA GTGGCTCGCCTGAGCCAGAGATTTCCCAAΛGCTGΛGTTTGCAGAAGTTTCCAAGTTAGT GACAGA l C lT ACCAAAGTCCACACGGAATGCTGCCATGGAGATCTGCTTGAATGTGCTG ATGACAGGGCGGACCTTGCCAAGTATATCTGTGAAAATCAGGATTCGATCTCCAGTAA ACTGAAGGAΛTGCTGTGΛAAAACCTCTGTTGGAAAAATCCCACTGCATTGCCGAAGTG GAAAATGATGAGATGCCTGCTGACTTGCCTTCATTAGCTGCTGATTTTGTTGAAAGTAA GGATGTTTGCAAAAACTATGCTGAGGCAAAGGATGTCTTCCTGGGCATGTTTTTGTATG AATATGCAAGAAGGCATCCTGATTACTCTGTCGTGCTGCTGCTGΛGACTTGCCAAGACA TATGAAACCACTCTAGAGAAGTGCTGTGCCGCTGCAGATCCTCATGAATGCTATGCCAA AGTGTTCGATGAATTTAAACCTCTTGTGGAAGAGCCTCAGAATTTAATCAAACAAAACT GTGAGCTTTTTAAGCAGCTTGGAGAGTACΛΛΛTTCCAGAATGCGCTATTAGTTCGTTAC ACCAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAAACCTAG GAAAAGTGGGCAGCAAATGTTGTAAACATCCTGAAGCAAAAAGAATGCCCTGTGCAGA ΛGΛCTATCTATCCGTGGTCCTGAACCAGTTATGTGTGTTGCATGAGAAAACGCCAGTAA GTGACAGAGTCACAAAATGCTGCACAGAGTCCTTGGTGAACAGGCGACCATGCTTTTC AGCTCTGGAAGTCGATGAAACATACGTTCCCAAAGAGTTTAATGCTGAAACATTCACCT TCCATGCAGATATATGCACACTTTCTGAGAAGGAGAGACAAATCAAGAAACAAACTGC ACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTT ATGGATGATTTCGCAGCTTTTGTAGAGAAGTGCTGCAAGGCTGACGATAAGGAGACCT GCTTTGCCGAGGAGGGTAAAAAACTTGTTGCTGCAAGTCAAGCTGCCTTAGGCTTA
SEQ ID NO:5 Polypeptide Connector Amino Acid Sequence AAAL
SEQ ID NO:6
Human Serum Albumin (HSA) Linker with C34S and N503Q substitutions ("mHSA") and Polypeptide Connector Amino Acid Sequence
AASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RLVRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYΛPELLFFAKRYKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYΛEΛKDVFLGMFL YEYARRHPDYSVVLLL RLAKTYEl TLEKCCAAADPHECYAKVFDEFKPL VEEPQNLTKQNCELFEQLGEYKFQNA LL VRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIK KQ I AL VELVKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCF AEEGKKL V AASQA ALGL
SEQ ID NO:7 Human Serum Albumin (HSA) Linker with C34S and N503Q substitutions ("mHSA") and Polypeptide Connector Amino Acid Sequence
AAQDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RLVRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKRYKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEF AE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCF AEEGKKL VAASQA ALGL
SEQ ID NO:8
Human Serum Albumin (HSA) Linker with C34S and N503Qsubstitutions ("mHSA") and
Polypeptide Connector
Amino Acid Sequence
DAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVADES AENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLV RPEVD VMCTAFHDNEETFLKKYLYEIARRHP YFYAPELLFF AKRYKAAFTECCQAADK AACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEF AEVS KLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAE VENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRL AKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALL VRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEK TPVSDRVTKCCTESL VNRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIKKQ TAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKL VAASQAAL GLAAAL
SEQ ID NO: 9
Human Serum Albumin (HSA) Linker with C34S and N503Q substitutions ("mHSA") and Polypeptide Connector Amino Acid Sequence
AASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RLVRPE VD VMCTAFHDNEETFLKK YL YEI ARRHP YF YAPELLFF AKR YKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFΈQLGEYKFQNA LL VRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCF AEEGKKLVAASQA ALGLAAAL SEQ ID NO:10
Human Serum Albumin (HSA) Linker with C34S and N503Q substitutions ("mHSA") and
Polypeptide Connector
Amino Acid Sequence
AAQDAHKSbVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RL VRPEVD VMCTΛFHDNEETFLKK YL YEIARRHP YFYAPELLFFAKRYKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYLS VVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKL VAASQA ALGLAAAL
SEQ ID NOrIl
Human Serum Albumin (HSA) Linker and Polypeptide Connector Amino Acid Sequence
AASDAHKSEVAHRFKDLGEENFKAL VLIAF AQYLQQCPFEDHVKL VNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RLVRPEVDVMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKRYKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LL VRYTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYLS VVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKL VAASQA ALGL
SEQ ID NO:12 Human Serum Albumin (HSA) Linker and Polypeptide Connector Amino Acid Sequence
AAQDAHKSEVAHRFKDLGEENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAA DKΛΛCLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQA ALGL
SEQ ID NO:13
Human Serum Albumin (HSA) Linker and Polypeptide Connector Amino Acid Sequence
DAHKSEV AHRFKDLGEENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVADES AENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLV RPEVD VMCTAFHDNEETFLKKYL YEIARRHP YFYAPELLFFAKRYKAAFTECCQAADK AACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAEVS KLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAE VENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRL AKTYETTLEKCCAAADPFIECYAKVFDEFKPL VEEPQNLIKQNCELFEQLGEYKFQNALL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEK TPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHΛDICTLSEKERQIKKQ TALVEL VKHKPKA TKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKL VAASQAAL GLAAAL
SEQ ID NO:14
Human Serum Albumin (HSA) Linker and Polypeptide Connector
Amino Acid Sequence AASDAHKSEVAHRFKDLGEENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RL VRPEVDVMCTAFHDNEETFLKKYL YEIARRHP YFYAPELLFFAKRYKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSIICI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDR VTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCF AEEGKKLVAASQA ALGLAAAL
SEQ ID NO:15
Human Serum Albumin (HSA) Linker and Polypeptide Connector
Amino Acid Sequence
AAQDAHKSEVAHRFKDLGEENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVA DESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLP RL VRPEVD VMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKR YKAAFTECCQAA DKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAE VSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCI AEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLL RLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNA LLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLH EKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIK KQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQA ALGLAAAL
SEQ ID NO: 16 mHSA Linker, Polypeptide Connectors, H3 (anti-ErbB3) scFv, and B1D2 (anti-ErbB2) scFv ("B2B3-1") Amino Acid Sequence
QVQLQESGGGL VKPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANINRDGSA SYYVDSVKGRFTISRDDAKNSLYLQMNSLRAEDTAVYYCARDRGVGYFDLWGRGTLV TVSSASTGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDVGGYNFVSWY QQHPGKAPKLMIYDVSDRPSGVSDRFSGSKSGNTASLIISGLQADDEADYYCSSYGSSST HVIFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKL VNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNE CFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAK RYKAAΓTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV ARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKL KECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYE YARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPL VEEPQNLIKQNC ELFEQLGEYKFQNALL VRYTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAE DYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTF HADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCICADDKETC FAEEGKKL VAASQAALGLAAALQVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIAW VRQMPGKGLEYMGLIYPGDSDTKYSPSFQGQVTIS VDKSVSTA YLQWSSLKPSDSA VYF CARHDVGYCTDRTCAKWPEWLGVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLTQPP SVSAAPGQKVΉSCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSGSKS GTSASLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:17
B2B3-2 (A5-mHSA-BlD2) QVQLVQSGGGLVKPGGSLRLSCAASGFSFNTYDMNWVRQAPGKGLEWVSSISSSSSYIY YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDGVATTPFDYWGQGTLVT VSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYD VHWYQQL PGTΛPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSALF GGGTKLTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNE VTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFL QHKDDNPNLPRL VRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKR YK AAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARL SQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKEC CEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKD VFLGMFL YEYAR RHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELF EQLGEYKFQNALL VRYTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYL SWLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADI CTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEE GKKLVAASQAALGLAAALQVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIAWVRQ MPGKGLEYMGLIYPGDSDTKYSPSFQGQ VTISVDKSVSTA YLQWSSLKPSDSA VYFCAR HDVGYCTDRTCAKWPEWLGVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLTQPPSVS AAPGQKVΉSCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSGSKSGTS ASLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO: 18 B2B3-3 (A5-mHSA-F5B6H2)
QVQLVQSGGGL VKPGGSLRLSCAASGFSFNTYDMNWVRQAPGKGLEWVSSISSSSSYIY YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDGVATTPFDYWGQGTLVT VSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYD VHWYQQL PGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSALF GGGTKLTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNE VTEFΛKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFL
QHKDDNPNLPRLVRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKRYK AAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARL SQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKEC CEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKD VFLGMFLYEYAR RHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPL VEEPQNLIKQNCELF EQLGEYKFQNALL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYL SVVLNQLCVLHEKTPVSDR VTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTFHADI CTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEE GKKLVAASQAALGLAAALQVQLVESGGGL VQPGGSLRLSCAASGFTFRSYAMSWVRQ APGKGLEWVSAISGRGDNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA KMTSNA VGFD YWGQGTL VTVSSGGGGSGGGSGGGGSGQSVLTQPPSVSGAPGQR V TlS CTGRHSNIGLGYGVHWYQQLPGTAPKLLIYGNTNRPSGVPDRFSGFKSGTSASLAITGLQ AEDEADYYCQSYDRRTPGWVFGGGTKLTVLG
SEQ ID NO:19
B2B3-4 (A5-mHSA-ML3.9) QVQLVQSGGGLVKPGGSLRLSCAASGFSFNTYDMNWVRQAPGKGLEWVSSISSSSSYIY YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDGVATTPFDYWGQGTLVT VSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQL PGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEAD YYCQSYDSSLSALF GGGTKLTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKLVNE VTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFL QHKDDNPNLPRLVRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAKRYK AAFTECCQAADKAACLLPKLDELRDEGKASSΛKQRLKCASLQKFGERAFKAWAVARL SQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKEC CEKPLLEKSHCIAE VENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYAR RHPDYSVVLLLRLAKTYETTLEKCCΛAADPHECYAKVFDEFKPLVEEPQNLIKQNCELF EQLGEYKFQNALL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAEDYL SVVLNQLC VLIIEKTPVSDRVTKCCTESL VNRRPCFSALEVDETYVPKEFQAETFTFHADI CTLSEKERQIKKQTALVELVICHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEE GKKLVAASQAALGLAAALQVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIAWVRQ MPGKGLEYMGLIYPGDSDTKYSPSFQGQVTISVDKSVSTA YLQWSSLKPSDSA VYFCAR HDVGYCSSSNCAKWPEYFQHWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLTQPPSVSA APGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSGSKSGTSA SLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:20 B2B3-5 (B12-mHSA-BlD2)
QVQLVQSGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSI GYADSVKGRFTISRDNAKNSLYLQMNSLRPEDTAVYYCARDLGAKQWLEGFDYWGQG TLVTVSSASTGGGGSGGGGSGGGGSSYELTQDPAVSVALGQTVRITCQGDSLRSYYAS WYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSTSGNSASLTITGAQAEDEADYYCNSRDS SGNHWVFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFED HVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP ERNECFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELL FFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEF AEVSKL VTDLTKVHTECCIIGDLLECADDRADLAKYICENQDSIS
SKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKT)VFLGMF LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIK QNCELFEQLGEYKFQNALL VR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMP CAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAET FTFHADICTLSEKERQIKKQTAL VELVKHKPKATKEQLKA VMDDFAAFVEKCCKADDK ETCFAEEGKKL VAASQAALGLAAALQVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWI AWVRQMPGKGLEYMGLIYPGDSDTKYSPSFQGQVTISVDKSVSTAYLQWSSLKPSDSA VYFCARHDVGYCTDRTCAK WPEWLGVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVL TQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFS GSKSGTSASLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:21
B2B3-6 (B12-mHSA-F5B6H2) QVQLVQSGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSI GYADSVKGRFTISRDNAKNSLYLQMNSLRPEDTA VYYCARDLGAKQWLEGFD YWGQG TLVTVSSASTGGGGSGGGGSGGGGSSYELTQDPAVSVALGQTVRITCQGDSLRSYYAS WYQQKPGQAPVL VIYGKNNRPSGIPDRFSGSTSGNSASLTITGAQAEDEAD YYCNSRDS SGNHWVFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFED HVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP ERNECFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFKKYLYEIARRHPYFYAPELLF FAKRYKAAFTECCQAADKAACLLPKLDELRDEGI-CASSAKQRLKCASLQKFGERAFKA WAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSIS SKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMF LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPL VEEPQNLIK QNCELFEQLGEYKFQNALL VRYTKK VPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMP CAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAET FTFHADICTLSEKERQIKKQTAL VEL VKHKPKATKEQLKA VMDDFΛAFVEKCCKADDK ETCFAEEGKKL VAASQAALGLAAALQVQL VESGGGLVQPGGSLRLSCAASGFTFRSYA MSWVRQAPGKGLEWVSAISGRGDNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAED TAVYYCAKMTSNAVGFDYWGQGTLVTVSSGGGGSGGGSGGGGSGQSVLTQPPSVSGA PGQRVTISCTGRHSNIGLGYGVHWYQQLPGTAPKLLIYGNTNRPSGVPDRFSGFKSGTSA SLAITGLQAEDEADYYCQSYDRRTPGWVFGGGTKLTVLG
SEQ ID NO:22 B2B3-7 (F4-mHSA-B 1D2)
QVQLQESGGGLVKPGGSLRLSCAASGFTFSSYAMS WVRQAPGKGLEWVSTISGSGGST
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGYSSSWSEVASGYWGQG
TLVTVSSΛSTGGGGSGGGGSGGGGSAIVMTQSPSSLSASVGDRVTITCRASQGIRNDLG WYQQKAGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYFCQQAHSF PPTFGGGTKVEIKRGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVK LVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERN ECFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFΛ KRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWA VARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSK LKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLY EYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPL VEEPQNLIKQN CELFEQLGEYKFQNALLVR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCA ED YLSVVLNQLCVLHEKTPVSDRVTKCCTESL VNRRPCFSALEVDETYVPKEFQΛETFT FHADICTLSEKERQIKKQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKET CFAEEGKKL V AASQAALGLAAALQVQL VQSGAEVKKPGESLKISCKGSGYSFTSYWIA WVRQMPGKGLEYMGLIYPGDSDTKYSPSFQGQVTISVDKSVSTAYLQWSSLKPSDSAV YFCARHDVGYCTDRTCAK WPEWLGVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLT QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSG SKSGTSASLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:23
B2B3-8 (F4-mHSA-F5B6H2) QVQLQESGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSTISGSGGST YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGYSSSWSEVASGYWGQG TLVTVSSASTGGGGSGGGGSGGGGSAIVMTQSPSSLSASVGDRVTITCRASQGIRNDLG WYQQKAGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYFCQQAHSF PPTFGGGTKVEIKRGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVK LVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERN ECFLQHKDDNPNLPRL VRPEVDVMCTAFHDNEETFLKKYL YEIARRHPYFY APELLFFA KRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWA VARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSK LKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLY EYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPL VEEPQNLIKQN CELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCA EDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFT FHADICTLSEKERQIKKQTALVEL VKHKPKATKEQLKA VMDDF AAFVEKCCKADDKET CFAEEGKKL VAASQAALGLAAALQVQL VESGGGL VQPGGSLRLSCAASGFTFRSYAMS WVRQAPGKGLEWVSAISGRGDNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTA VYYCAKMTSNAVGFDYWGQGTLVTVSSGGGGSGGGSGGGGSGQSVLTQPPSVSGAPG QRVTISCTGRHSNTGLGYGVHWYQQLPGTAPKLLIYGNTNRPSGVPDRFSGFKSGTSASL AITGLQAEDEADYYCQSYDRRTPGWVFGGGTKLTVLG
SEQ ID NO:24 B2B3-9 (H3-HSA-B1D2)
QVQLQESGGGL VKPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANINRDGSA SYYVDSVKGRFTISRDDAKNSLYLQMNSLRAEDTAVYYCARDRGVGYFDLWGRGTLV TVSSASTGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSD VGGYNFVSWY QQHPGKAPKLMIYDVSDRPSGVSDRFSGSKSGNTASLIISGLQADDEADYYCSSYGSSST HVIFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPtEDHVK LVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERN ECFLQHKDDNPNLPRL VRPEVDVMCTAFHDNEETFLKKYL YEIARRHP YFYAPELLFFΛ KRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWA VARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSK LKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLY EYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAK VFDEFKPL VEEPQNLIKQN CELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCA EDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFT FHADICTLSEKERQIKKQTALVEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKET CF AEEGKKL VAASQAALGLAAALQVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIA WVRQMPGKGLEYMGLIYPGDSDTKYSPSFQGQVTISVDKSVSTΛ YLQ WSSLKPSDSAV YFCARHDVGYCTDRTCAKWPEWLGVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLT QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSG SKSGTSASLAISGFRSEDEADYYCASWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:25
B2B3-10 (H3-mHSA-F5B6H2) QVQLQESGGGLVKPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANINRDGSA SYYVDSVKGRFTISRDDΛKNSL YLQMNSLRAEDTA VYYCARDRGVGYFDLWGRGTLV TVSSASTGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDVGG YNFVSWY QQHPGKAPKLMIYDVSDRPSGVSDRFSGSKSGNTASLIISGLQADDEADYYCSSYGSSST HVIFGGGTKVTVLGAASDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQSPFEDHVKL VNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNE CFLQHKDDNPNLPRL VRPEVD VMCTAFHDNEETFLKKYL YEIARRHPYFYAPELLFFAK RYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV ARLSQRFPKAEFAEVSKL VTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKL KECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYE YARRHPDYSWLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNC ELFEQLGEYKFQNALLVR YTKKVPQVSTPTL VEVSRNLGKVGSKCCKHPEAKRMPCAE DYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFQAETFTF HADICTLSEKERQIKKQTAL VEL VKHKPKATKEQLKA VMDDFAAFVEKCCKADDKETC FAEEGKKLVAASQAALGLAAALQVQLVESGGGLVQPGGSLRLSCAASGFTFRSYAMSW VRQAPGKGLEWVSAISGRGDNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVY YCAKMTSNAVGFDYWGQGTLVTVSSGGGGSGGGSGGGGSGQSVLTQPPSVSGAPGQR VTISCTGRHSNIGLGYGVHWYQQLPGTAPKLLIYGNTNRPSGVPDRFSGFKSGTSASLAI TGLQAEDEADYYCQSYDRRTPGWVFGGGTKLTVLG
SEQ ID NO:26 H3 (anti-ErbB3) scFv
QVQLQLSGGGLVKPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANINRDGSA SYYVDSVKGRFTISRDDAKNSLYLQMNSLRAEDTAVYYCARDRGVGYFDLWGRGTLV TVSSASTGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDVGGYNFVSWY QQHPGKAPKLMIYDVSDRPSGVSDRFSGSKSGNTASLIISGLQADDEADYYCSS YGSSST HVIFGGGTKVTVLG
SEQ ID NO:27 B1D2 (anti-ErbB2)
QVQL VQSGAEVKKPGESLKISCKGSGYSFTSYWIA WVRQMPGKGLEYMGLIYPGDSDT KYSPSFQGQVTISVDKSVSTA YLQ WSSLKPSDSA VYFCARHDVGYCTDRTCAKWPEWL GVWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLTQPPSVSAAPGQKVTISCSGSSSNIGN NYVSWYQQLPGTAPKLLIYDHTNRPAGVPDRFSGSKSGTSASLAISGFRSEDEADYYCA SWDYTLSGWVFGGGTKLTVLG
SEQ ID NO:28
A5 (anti-ErbB3) scFv QVQLVQSGGGL VKPGGSLRLSCAASGFSFNTYDMNWVRQAPGKGLEWVSSISSSSSYIY
YADSVKGRFTiSRDNAKNSLYLQMNSLRAEDTA VYYC ARDGVA Γ ΓPFD Y WGQGTL VT
VSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYD VHWYQQL PGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEAD YYCQSYDSSLSALF GGGTKLTVLG
SEQ ID NO:29
ML3.9 (anti-ErbB2) scFv
QVQLVQSGAE VKKPGESLKISCKGSGYSFTSYWIA WVRQMPGKGLEYMGLIYPGDSDT KYSPSFQGQVTISVDKSVSTAYLQWSSLKPSDSA VYFCARHDVGYCSSSNCAKWPEYFQ HWGQGTL VTVSSGGGGSSGGGSGGGGSQSVLTQPPSVSAAPGQKVTISCSGSSSNIGNN YVSWYQQLPGTAPKLLIYDHTNRPΛ GVPDRFSGSKSGTSASLAISGFRSEDEAD YYCAS WDYTLSGWVFGGGTKLTVLG
91 SEQ ID NO:30
B12 (anti-ErbB3) scFv
QVQLVQSGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSI GYADSVKGRFTISRDNAKNSLYLQMNSLRPEDTAVYYCARDLGAKQWLEGFDYWGQG TLV'FVSSASTGGGGSGGGGSGGGGSSYELTQDPA VSVALGQTVRITCQGDSLRSYYAS WYQQKPGQAPVL VIYGKNNRPSGIPDRFSGSTSGNSASLTITGAQAEDEAD YYCNSRDS SGNHWVFGGGTKVTVLG SEQ ID NO:31
F4 (anti-ErbB3) scFv
QVQLQESGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSTISGSGGST YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGYSSSWSEVASGYWGQG TL VTVSSASTGGGGSGGGGSGGGGSAIVMTQSPSSLSASVGDRVTITCRASQGIRNDLG WYQQKAGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYFCQQAHSF PPTFGGGTKVEIKRG
SEQ ID NO:32 F5B6H2 (anti-ErbB2) scFv
QVQLVESGGGLVQPGGSLRLSCAASGFTFRSYAMSWVRQAPGKGLEWVSAISGRGDNT YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKMTSNAVGFDYWGQGTLV TVSSGGGGSGGGSGGGGSGQSVLTQPPSVSGAPGQR VTISCTGRHSNIGLGYGVHWYQ QLPGTAPKLLIYGNTNRPSGVPDRFSGFKSGTSASLAITGLQAEDEADYYCQSYDRRTPG WVFGGGTKLTVLG
SEQ ID NO:33 c-myc EQKLISEEDL
SEQ ID NO:34 hemagglutinin YPYDVPDYA
SEQ ID NO:35
Histidine tag (HIS6) HHHHHH SEQ TD NO:36
Caspase 3 Homo sapiens CAC88866 MENTENSVDSKSIKNLEPKIIHGSESMDSGMSWDTGYKMDYPEMGLCIIINNKNFHKST GMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCV LLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVD DDMACHKIPVDADFL YAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILT RVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYH SEQ ID NO:37
Caspase 8 Homo sapiens AAD24962 MDFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLS FLKELLFRΓNRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFK FLLQEEISKCKLDDDMNLLDTFΪEMKKRVILGEGKLDILKRVCAQFNKSLLKIIND YEEFSK ERSSSLEGSPDEFSNGEELCGVMTISDSPREQDSESQTLDKVYQMKSKPRGYCLIINNHN FΛKΛREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYDILKIYQLMD HSNMDCFICCΪLSHGDKGIIYGTDGQEPPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDN YQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNP AEGTWYIQ SLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTLRKKL VFPSD
SEQ ID NO:38 Granzyme B Homo sapiens AAA75490
MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVL TAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRAIPHPA YNPKNFSNDIMLLQLERKAKR TRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSF VHWIKKTMKRY SEQ ID NO:39
Cytochrome c Homo sapiens NP_061820 MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGI IWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE
SEQ ID NO:40
Tumor Necrosis Factor Alpha (TNFα) Homo sapiens CAA26669
MSTESMIRDVLLAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQRE EFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR DNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRET PEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPD YLDFAESGQVYFGIIAL SEQ ID NO:41
Fas
Homo sapiens CAI13871
MLGIWTLLPLVLTSVARLSSKSVNAQVTDINSKGLELRKTVTTVRTQNLEGLHHDGQFC HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEI NCTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCEHGIIKECTLTSNTKCKEEVKRKEVQK TCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNE AKIDEIKNDN VQDTAEQK VQLLRN WHQLHGKKEA YDTLIKDLKKANLCTLAEKIQTIIL KDITSDSENSNFRNEIQSLV
SEQ ID NO:42
Bad (Bcl2 antagonist of cell death) Homo sapiens CAG46757
MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH HGGAGAVEIRSRΉSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMS DEFVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
SEQ ID NO:43
Apoptosis Inducing Protein (AIP) Homo sapiens AAK67626
MVDHLANTEINSQRIAA VESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFND ILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQ EWISHIEECVRRQLKATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGF VVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPRQPAHLARPIC GASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS
SEQ ID NO:44
Pierisin-1 Pier is rapae Q9U8Q4
MADRQPYMTNGIQAAVVEWIRALDLEIISLLLSRAWPMALLATSELRWRPTVLTDTDN VVRLDRRQRLVRWDRRPPNEIFLDGFVPIVTRENPDWEETDLYGFAKNNHPSIFVSTTKT QRNKKKYVWTPRNANRGIVYQYETYAPGGVDVNDSFSDASPWPNQMEVAFPGGIQNIY IRSARELFINGRIQRIWINPNFLDPGDLEPIVSSSRTPQVIWRMNHPDGGFIRDQRSERSASS YDDLMYGGTGNVQEDTFGDEPNNPKPIAAGEFMIESIKDKNSFLDLSKNVNGGVIHSNL YSGGDNQTWVFSYDDNKKAYRIQSYQNSYLYLSWDSNASSKEMILRGYTNSGSNNQY WQIEQTGKNYRLRNLLNLDMIITAQDKPSAFGGKEVIVNTEISNSNTKISQEWKMIPFDF RPIIDGDYNIFNVDLSNQVVDFSNQPDLLVHGHIFCDNENQTWHFTYNSTYHAYKIWSG RICSNLLLTWDSNAASKEMVVRA YTESRSKNQYWRIEQTGSKSYKVRNLENSSMILGLT RVSTPYGGLNLMVEDDSDGHSDLHSDWDIKPIFYQDIPDGDYNIFNDNFPNIAIDFTNQE GSLIHGHNFCSNNNQKWSFVFDGKRKA YRIKSGVRSNL WLSWDSNASSKEMVLRA YTE SGSSNQYWRLDEANDGSYRIRNLQDYYKLIALTNKNTPYGGKELIVSDNKESGNTWYL KKLGEVPLPNRKFRIATKLNYKKVIDSSTSYNLIITHDLNFASSIWELVYDSSKKAYNIYS SDINNLGWIYQNKNFFVKLGNIDGPDHGDLRYFWTIEYSMQTGCYLIRSLHDP ANAVGY TDSESVITDTSTYSDNQLFHFILM
SEQ ID NO:45
TRAIL (TNF-related apoptosis-inducing ligand) Homo sapiens P50591
MAMMEVQGGPSLGQTCVLIVIFTVLLQSLCVA VTYVYFTNELKQMQDKYSKSGIACFL KEDDSYWDPNDEESMNSPCWQVKWQLRQLVRKMILRTSEETISTVQEKQQNISPLVRE RGPQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVI HEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPDPILLMKSARNSCWSKDA EYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFLVG
SEQ ID NO:46 Bax
Homo sapiens Q07812
MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKK LSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYF ASKLVLKALCTKVPELIRTIMGAVTLDFLRERLLG WIQDQGGWDGLLSYFGTPTWQTVTI FVAGVLTASLTIWKKMG
SEQ ID NO:47 Green Fluorescent Protein (GFP) Aequorea victoria P42212
MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPT LVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGD TLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQ LADHYQQNTPIGDGPVLLPDNFIYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDE
LYK SEQ ID NO:48
Yellow Fluorescent Protein (YFP)
Aliivibrio fischeri
P21578
MFKGIVEGIGIIEKIDIYTDLDKYAIRFPENMLNGIKKESSIMFNGCFLTVTSVNSNIVWFD IFEKEARKLDTFRE YKVGDRVNLGTFPKFGAASGGHILSARISCVASIIEIIENEDYQQMW IQIPENFTEFLIDKDYIAVDGISLTIDTIKNNQFFISLPLKIAQNTNMKWRKKGDKVNVELS NKINANQCW
SEQ ID NO:49
Cyan Fluorescent Protein (CFP)
Montastraea cavernosa
AALl 7905
MSVIKSVMKIKLRMDGIVNGHKFMITGEGEGKPFEGTHTIILKVKEGGPLPFAYDILTTAF
QYGNRVFTKYPKDIPDYFKQSFPEGYSWERSMTFEDQGVCTVTSDIKLEGDCFFYEIRFY
GVNFPSSGPVMQKKTLKWEPSTENMYVRDGVLLGDVSRTLLLEGDKHHRCNFRSTYG
AKKGVVLPEYHFVDHRIEILSHDKD YNTVE VYENA VARPSMLPVKAK
SEQ ID NO:50
Red Fluorescent Protein (RFP)
Discosoma sp. SSAL-2000
AAG 16224
MSCSKNVIKEFMRFKVRMEGTVNGIIEFEIKGEGEGRP YEGHCSVKLMVTKGGPLPFAF
DILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVSQDSSLKDG CFIYEVKFIGVNFPSDGPVMQRRTRGWEASSERL YPRDGVLKGDIHMALRLEGGGHYL VEFKSIYMVKKPSVQLPGYYYVDSKLDMTSHNEDYTVVEQYEKTQGRHHPFIKPLQ
SEQ ID NO:51
Luciferase Photinus pyralis CAA59282
MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEM SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVA VAPANDIYNERELLNSM NISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEY DFVPESFDRDKTIALIMNSSGSTGSPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV PFHHGFGMFTTLGYLicGFR VVLMYRFΈEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNDPEATNALIDKDGWLH SGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPGDDAGE LPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE ILIKΛKKGGKSKL SEQ ID NO:52
Luciferase Renilla reniformis AAA29804
MTSKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNAASS YLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFV GHDWGΛCLΛFHYSYEHQDKIKAIVHAESVVDVIESWDEWPDIEEDIALIKSEEGEKMVL ENNFFVETMLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQI VRNYNAYLRASDDLPKMFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFSQEDAPDEM GKYIKSFVERVLKNEQ
SEQ ID NO:53
Human Serum Albumin (HSA) Linker with C34S substitution, Domain I Amino Acid Sequence
DAHKSEVAHRFKDLGEENFKAL VLIAFAQYLQQSPFEDHVKLVNEVTEFAKTCVADESAE NCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEV DVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKR YKAAFTECCQAADKAACLLP KLDELRDEGKASSAKQR
SEQ ID NO: 54
Human Serum Albumin (HSA) Linker, Domain II
Amino Acid Sequence
GKASSAKQRLKCASLQKFGERAFKA WA VARLSQRFPKAEFAEVSKL VTDLTKVHTECC
HGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLΛ
ADFVESKDVCKNYAEAKD VFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA
ADPHECYAKVFDEFKPLVEEPQ
SEQ ID NO: 55
Human Serum Albumin (HSA) Linker with N503Q substitution, Domain III
Amino Acid Sequence VEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTL VEVSRNLGKVGSKCCK HPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETY VPKEFQAETFTFHADICTLSEKERQIKKQTAL VEL VKHKPKATKEQLKA VMDDFAAFVE KCCKADDKETCFAEEGKKLVAASQAALGL SEQ ID NO:56
Human Serum Albumin (HSA) Linker, Domain I Amino Acid Sequence
DAHKSEVAHRFKDLGEENFKAL VLIAFAQYLQQCPFEDHVKL VNEVTEFAKTCVADES AENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLV RPEVD VMCTAFHDNEETFLKK YL YEIARRHPYFY APELLFF AKR YKAAFTECCQAADK A ACLLPKLDELRDEGKΛS SΛKQR
SEQ ID NO:57 Human Scrum Albumin (HSA) Linker, Domain III Amino Acid Sequence
VEEPQNLIKQNCELFEQLGEYKFQNALL VRYTKKVPQVSTPTL VEVSRNLGKVGSKCCK HPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETY VPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKA VMDDFAAFVE KCCKADDKETCFAEEGKKLVAASQAALGL
SEQ ID NO:58 Human Alpha-Fetoprotein Amino Acid Sequence
MK WVESIFLIFLLNFTESRTLHRNEYGIASILDSYQCTAEISLADLATIFFAQFVQEATYKE VSKMVKDALTAIEKPTGDEQSSGCLENQLPAFLEELCHEKEILEKYGHSDCCSQSEEGRH NCFLAHKKPTPASIPLFQVPEPVTSCEA YEEDRETFMNKFIYEIARRHPFLYAPTILLWAA RYDKIIPSCCICAENAVECFQTKAATVTKELRESSLLNQHACAVMKNFGTRTFQAITVTK LSQKFTKVNFTEIQKLVLDVAHVHEHCCRGDVLDCLQDGEKIMSYICSQQDTLSNKITE CCKLTTLERGQCIIHAENDEKPEGLSPNLNRFLGDRDFNQFSSGEKNTFLASFVHEYSRRH PQLA VSVILR VAKGYQELLEKCFQTENPLECQDKGEEELQKYIQESQALAKRSCGLFQK LGEYYLQNAFL VA YTKKAPQLTSSELMAITRKMΛΛTΛΛTCCQLSEDKLLACGEGAADII IGHLCIRHEMTPVNPGVGQCCTSSYANRRPCFSSLVVDETYVPPAFSDDKFIFHKDLCQA QGVALQTMKQEFLINL VKQKPQITEEQLEA VIADFSGLLEKCCQGQEQEVCFAEEGQKLI SKTRAALGV
Figure imgf000106_0001
CDR loops are highlighted within H3 (blue with pink CDRs) and B1D2 (pink with cyan CDRs). Connectors to modified HSA are shown in red.
Figure imgf000107_0001
Figure imgf000108_0001
Figure imgf000109_0001
Figure imgf000110_0001
Figure imgf000111_0001
Figure imgf000112_0001
Figure imgf000113_0001
Figure imgf000114_0001
Figure imgf000115_0001
Figure imgf000116_0001
Figure imgf000117_0001
Figure imgf000118_0001
Figure imgf000119_0001
Figure imgf000119_0002
Figure imgf000120_0001
Other Embodiments
While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure that come within known or customary practice within the art to which the invention pertains and may be applied to the essential features hereinbefore set forth. All publications and patent applications mentioned in this specification are herein incorporated by reference to the same extent as if each independent publication or patent application was specifically and individually indicated to be incorporated by reference in their entirety.
What is claimed is:

Claims

1. Λn agent comprising: i) a human serum albumin (HSA) linker comprising an amino acid sequence set forth in any one of SEQ ID NOS:6-10; and ii) first and second binding moieties selected from the group consisting of antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, receptors, ligands, aptamers, and biologically-active fragments thereof, wherein said first binding moiety is bonded to the amino terminus of said HSA linker and said second binding moiety is bonded to the carboxy terminus of said HSA linker.
2. An agent comprising: i) a human serum albumin (HSA) linker comprising an amino acid sequence set forth in any one SEQ ID NOS:1 1-15; and ii) first and second binding moieties selected from the group consisting of antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, receptors, ligands, aptamers, and biologically-active fragments thereof, wherein said first binding moiety is bonded to the amino terminus and said second binding moiety is bonded to the carboxy terminus of said sequence.
3. The agent of claim 1 or 2, wherein said first binding moiety specifically binds ErbB3 and said second binding moiety specifically binds ErbB2.
4. The agent of claim 1 comprising the amino acid sequence set forth in SEQ ID NO:9.
5. The agent of claim 1 comprising the amino acid sequence set forth in SEQ ID NO: 10.
6. The agent of claim 2 comprising the amino acid sequence set forth in SEQ ID NO: 14.
7. The agent of claim 2 comprising the amino acid sequence set forth in SEQ ID NO:15.
8. A human serum albumin (HSA) linker comprising an amino acid sequence having at least 90% sequence identity to the sequence set forth in SEQ ID NO: 1 and comprising a serine residue at position 34 of SEQ ID NO: 1 and a glutamine residue at position 503 of SEQ ID NO: 1.
9. The HSA linker of claim 8, comprising an amino acid sequence having at least 95% sequence identity to the sequence set forth in SEQ ID NO: 1.
10. The HSA linker of claim 8, comprising the amino acid sequence set forth in SEQ ID NO:1.
11. An agent comprising the HSA linker of claim 8 and at least a first binding moiety.
12. The agent of claim 1 1 further comprising a first polypeptide connector that binds said first binding moiety to said HSA linker.
13. The agent of claim 12, wherein said connector binds said first binding moiety to the amino terminus of said HSA linker.
14. The agent of claim 12, wherein said connector binds said first binding moiety to the carboxy terminus of said HSA linker.
15. The agent of claim 12, wherein said connector covalently binds said first binding moiety to said HSA linker.
16. The agent of claim 1 1 further comprising a second binding moiety.
17. The agent of claim 16 further comprising a second polypeptide connector that binds said second binding moiety to said HSA linker.
18. The agent of claim 17, wherein said connector binds said second binding moiety to the amino terminus of said HSA linker.
19. The agent of claim 17, wherein said connector binds said second binding moiety to the carboxy terminus of said HSA linker.
20. The agent of claim 17, wherein said connector covalently binds said second binding moiety to said HSA linker.
21. The agent of claim 16 further comprising a first connector that covalently binds said first binding moiety to the amino terminus of said HSA linker and a second connector that covalently binds a second binding moiety to the carboxy terminus of said HSA linker.
22. The agent of claim 21, wherein said first connector comprises the amino acid sequence AAS or AAQ and said second connector comprises the amino acid sequence set forth in SEQ ID NO:5.
23. The agent of claim 16, wherein said first binding moiety or second binding moiety is selected from the group consisting of antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (IaFv) fragments, cell surface receptors or ligands, aptamers, and biologically-active fragments thereof,.
24. The agent of claim 16, wherein said first or second binding moiety specifically binds a protein selected from the group consisting of insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin- like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, α4 integrin, P-sclcctin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDl 1, CDl 8, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD 106 (vascular cell adhesion molecule 1 (VCAMl), CD 166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA -4, receptors alpha and beta, MART-I, gplOO, MAGE-I, ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I , epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof.
25. The agent of claim 24, wherein said EGFR is erythroblastic leukemia viral oncogene homolog (ErbB) receptor.
26. The agent of claim 16, wherein said first or second binding moiety is alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
27. The agent of claim 16, wherein said first or second binding moiety is selected from the group consisting of natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, and anakinra.
28. The agent of claim 16, wherein said first or second binding moiety is a single-chain Fv molecule.
29. The agent of claim 28, wherein said single-chain Fv molecule is human or humanized.
30. The agent of claim 1 1 further comprising a diagnostic or therapeutic agent.
31. The agent of claim 30, wherein said diagnostic agent is a detectable label.
32. The agent of claim 31, wherein said detectable label is a radioactive, fluorescent, or heavy metal label.
33. The agent of claim 30, wherein said therapeutic agent is a cytotoxic, cytostatic, or immunomodulatory agent.
34. The agent of claim 33, wherein said cytotoxic agent is an alkylating agent, an antibiotic, an antineoplastic agent, an antiproliferative agent, an antimetabolite, a tubulin inhibitor, a topoisomerase I or II inhibitor, a hormonal agonist or antagonist, an immunomodulator, a DNA minor groove binder, or a radioactive agent.
35. The agent of claim 34, wherein said antineoplastic agent is selected from the group consisting of cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5- fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozolc, cpirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
36. The agent of claim 33, wherein said agent is capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
37. The agent of claim 1 1 admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
38. The agent of claim 1 1, wherein said agent exhibits an in vivo half-life of between 6 hours and 7 days.
39. The agent of claim 1 1, wherein said agent exhibits an in vivo half-life greater than 8 hours.
40. An agent comprising: i) a human serum albumin (HSA) linker comprising the amino acid sequence set forth in any one of SEQ ID NOS: 11-15, or a fragment or variant thereof; and ii) at least a first binding moiety.
41. The agent of claim 40, wherein said first binding moiety is bonded to the amino terminus of said HSA linker.
42. The agent of claim 40, wherein said first binding moiety is bonded to the carboxy terminus of said HSA linker.
43. The agent of claim 40, wherein said first binding moiety is covalently bonded to said HSA linker.
44. The agent of claim 40 further comprising a second binding moiety.
45. The agent of claim 44, wherein said second binding moiety is bonded to the amino terminus of said HSA linker.
46. The agent of claim 44, wherein said second binding moiety is bonded to the carboxy terminus of said HSA linker.
47. The agent of claim 44, wherein said second binding moiety is covalently bonded to said HSA linker.
48. The agent of claim 44, wherein said first binding moiety or second binding moiety is selected from the group consisting of antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, cell surface receptors or ligands, aptamers, and biologically-active fragments thereof.
49. The agent of claim 44, wherein said first or second binding moiety specifically binds a protein selected from the group consisting of insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin- like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, α4 integrin, P-selectin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDl 1, CD18, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD 106 (vascular cell adhesion molecule 1 (VCAMl), CD166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, receptors alpha and beta, MART-I, gplOO, MAGE-I, ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I , epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA 125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof.
50. The agent of claim 49, wherein said EGFR is erythroblastic leukemia viral oncogene homolog (ErbB) receptor.
51. The agent of claim 44, wherein said first or second binding moiety is alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
52. The agent of claim 44, wherein said first or second binding moiety is selected from the group consisting of natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, and anakinra.
53. The agent of claim 44, wherein said first or second binding moiety is a single-chain Fv molecule.
54. The agent of claim 53, wherein said single-chain Fv molecule is human or humanized.
55. The agent of claim 40 further comprising a diagnostic or therapeutic agent.
56. The agent of claim 55, wherein said diagnostic agent is a detectable label.
57. The agent of claim 56, wherein said detectable label is a radioactive, fluorescent, or heavy metal label.
58. The agent of claim 55, wherein said therapeutic agent is a cytotoxic, cytostatic, or immunomodulatory agent.
59. The agent of claim 58, wherein said cytotoxic agent is an alkylating agent, an antibiotic, an antineoplastic agent, an antiproliferative agent, an antimetabolite, a tubulin inhibitor, a topoisomerase I or II inhibitor, a hormonal agonist or antagonist, an immunomodulator, a DNA minor groove binder, or a radioactive agent.
60. The agent of claim 59, wherein said antineoplastic agent is selected from the group consisting of cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, calcachimicin, methotrexate, 5- fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
61. The agent of claim 58, wherein said agent is capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
62. The agent of claim 40 admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
63. The agent of claim 40, wherein said agent exhibits an in vivo half-life of between 6 hours and 7 days.
64. The agent of claim 40, wherein said agent exhibits an in vivo half-life greater than 8 hours.
65. A method for treating a mammal having a disease or disorder, wherein said method comprises administering to said mammal the agent of claim 11 or 40.
66. The method of claim 65, wherein said disease or disorder is associated with cellular signaling through a cell surface receptor.
67. The method of claim 65, wherein said mammal is a human.
68. The method of claim 65, wherein said disease or disorder is a proliferative or autoimmune disease.
69. The method of claim 68, wherein said proliferative disease is melanoma, clear cell sarcoma, head and neck cancer, bladder cancer, breast cancer, colon cancer, ovarian cancer, endometrial cancer, gastric cancer, pancreatic cancer, renal cancer, prostate cancer, salivary gland cancer, lung cancer, liver cancer, skin cancer, or brain cancer.
70. The method of claim 68, wherein said autoimmune disease is multiple sclerosis, psoriasis, myasthenia gravis, uveitis, systemic lupus erythematosus, or rheumatoid arthritis.
71. A method for making a human serum albumin (HSA) agent comprising bonding a first binding moiety to the amino terminus and a second binding moiety to the carboxy terminus of the amino acid sequence set forth in any one of SEQ ID NOS:1, 3, or 6-15.
72. The method of claim 71 , wherein said joining comprises forming a covalent bond between said first and said second binding moiety and said amino and carboxy termini, respectively.
73. The method of claim 71, wherein said first binding moiety or second binding moiety is selected from the group consisting of antibodies, single-chain Fv molecules, bispecific single chain Fv ((scFv')2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, cell surface receptors or ligands, aptamers, and biologically-active fragments thereof,.
74. The method of claim 71 , wherein said first or second binding moiety specifically binds a protein selected from the group consisting of insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin- like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met), hepatocyte growth factor (HGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, α4 integrin, P-sclcctin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDI l, CD18, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD106 (vascular cell adhesion molecule 1 (VCAMl), CD166 (activated leukocyte cell adhesion molecule (ALCAM)), CD 178 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (IL-I), CTLA-4, receptors alpha and beta, MART-I, gplOO, MAGE-I , ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I, epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA 125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof.
75. The method of claim 74, wherein said EGFR is erythroblastic leukemia viral oncogene homolog (ErbB) receptor.
76. The method of claim 71 , wherein said first or second binding moiety is alpha-fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
77. The method of claim 71 , wherein said first or second binding moiety is selected from the group consisting of natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, dacli7umab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, and anakinra.
78. The method of claim 71, wherein said first or second binding moiety is a single-chain Fv molecule.
79. The method of claim 71, wherein said single-chain Fv molecule is human or humanized.
80. The method of claim 71, wherein said method further comprises conjugating one or more detectable labels to said agent.
81. The method of claim 80, wherein said detectable label is a radioactive, fluorescent, or heavy metal label.
82. The method of claim 71, wherein said method further comprises conjugating one ore more cytotoxic, cytostatic, or immunomodulatory agents to said agent.
83. The method of claim 82, wherein said cytotoxic agent is an alkylating agent, an antibiotic, an antineoplastic agent, an antiproliferative agent, an antimetabolite, a tubulin inhibitor, a topoisomerase I or II inhibitor, a hormonal agonist or antagonist, an immunomodulator, or a radioactive agent.
84. The method of claim 83, wherein said antineoplastic agent is selected from the group consisting of cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5- fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
85. The method of any one of claims 71-84, wherein said method further comprises admixing said agent with a pharmaceutically acceptable carrier.
86. A method for making a human serum albumin (HSA) agent comprising substituting one or more surface-exposed amino acid residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1, 3, and 6-15 with a substitute amino acid capable of chemical modification, wherein said modification allows conjugation of a diagnostic or therapeutic agent.
87. The method of claim 86, wherein said substitute amino acid is cysteine and wherein said surface exposed amino acid residues are serine or threonine.
88. The method of claim 86, wherein said chemical modification results in a covalent bond between said substitute amino acid and said diagnostic or therapeutic agent.
89. The method of claim 86, wherein said surface-exposed amino acid residues are selected from the group consisting of threonine at position 496, serine at position 58, threonine at position 76, threonine at position 79, threonine at position 83, threonine at position 125, threonine at position 236, serine at position 270, serine at position 273, serine at position 304, serine at position 435, threonine at position 478, threonine at position 506, and threonine at position 508.
90. A method for making a human serum albumin (HSA) agent comprising substituting one or more of the amino acid residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1, 3, and 6-15 with an asparagine, serine, or threonine, wherein said substituting incorporates a glycosylation site on said HSA agent.
91. A method for making a human serum albumin (HSA) agent comprising substituting one or more of the asparagine, serine, or threonine residues in the amino acid sequences set forth in any one of SEQ ID NOS: 1, 3, and 6-15 with any amino acid other than asparagine, serine, or threonine, wherein said substituting removes a glycosylation site from said HSA agent.
92. A kit comprising the HSA linker of claims 8-10.
93. A kit comprising the agent of claims 1, 2, 11, or 40.
94. An agent comprising an amino acid sequence having at least 90% sequence identity to any one of the amino acid sequences set forth in SEQ ID NOS: 16-25.
95. The agent of claim 94, comprising an amino acid sequence having at least 95% sequence identity to any one of the amino acid sequences set forth in SEQ ID NOS: 16-25.
96. The agent of claim 94, comprising any one of the amino acid sequence set forth in SEQ ID NOS: 16-25.
97. The agent of claim 94, further comprising a detectable label or therapeutic agent.
98. The agent of claim 97, wherein said detectable label is a radioactive, fluorescent, bioluminescent, or heavy metal molecule, or epitope tag.
99. The agent of claim 98, wherein said fluorescent molecule is green fluorescent protein (GFP), enhanced GFP (eGFP), yellow fluorescent protein (YFP), cyan fluorescent protein (CFP), red fluorescent protein (RFP), or dsRed.
100. The agent of claim 98, wherein said bioluminescent molecule is luciferase.
101. The agent of claim 98, wherein said epitope tag is c-myc, hemagglutinin, or a histidine tag.
102. The agent of claim 97, wherein said therapeutic agent is a cytotoxic polypeptide selected from the group consisting of cytochrome c, caspase 1-10, granzyme A or B, tumor necrosis factor-alpha (TNF-α), TNF-β, Fas, Fas ligand, Fas-associated death doman-like IL- l β converting enzyme (FLICE), TRAIL/APO2L, TWEAK/APO3L, Bax, Bid, Bik, Bad, Bak, RICK, vascular apoptosis inducing proteins 1 and 2 (VAPl and VAP2), pierisin, apoptosis-inducing protein (AIP), IL-lα propiece polypeptide, apoptin, apoptin-associated protein 1 (AAP-I), endostatin, angiostatin, and biologically-active fragments thereof.
103. The agent of claim 94, in combination with one or more therapeutic agents selected from the group consisting of cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
104. The agent of claim 1, 2, 16, or 44, wherein said first and second binding moieties specifically bind the same target molecule.
105. The agent of claim 1, 2, 16, or 44, wherein said first and second binding moieties specifically bind different target molecules.
106. The agent of claim 1, 2, 16, or 44, wherein said first and second binding moieties specifically bind different epitopes on the same target molecule.
107. The method of claim 65, wherein said first and second binding moieties specifically bind the same target molecule.
108. The method of claim 65, wherein said first and second binding moieties specifically bind different target molecules.
109. The method of claim 65, wherein said first and second binding moieties specifically bind different epitopes on the same target molecule.
1 10. The method of claim 71, wherein said first and second binding moieties specifically bind the same target molecule.
11 1. The method of claim 71, wherein said first and second binding moieties specifically bind different target molecules.
1 12. The method of claim 71, wherein said first and second binding moieties specifically bind different epitopes on the same target molecule.
113. A polypeptide linker comprising amino acid residues 25-44 and amino acid residues 494-513 of SEQ ID NO: 1.
1 14. The polypeptide linker of claim 113, comprising amino acid residues 25-70 and amino acid residues 450-513 of SEQ ID NO: 1.
115. The polypeptide linker of claim 114, comprising amino acid residues 15-100 and amino acid residues 400-520 of SEQ ID NO: 1.
1 16. The polypeptide linker of claim 115, comprising amino acid residues 10-200 and amino acid residues 300-575 of SEQ ID NO: 1.
1 17. The polypeptide linker of claim 116, comprising amino acid residues 5-250 and 275-580 of SEQ ID NO: 1.
1 18. The polypeptide linker of claim 113, further comprising at least a first binding moiety.
1 19. The polypeptide linker of claim 118 further comprising a first polypeptide connector that binds said first binding moiety to said polypeptide linker.
120. The polypeptide linker of claim 1 19, wherein said connector binds said first binding moiety to the amino-terminus of said polypeptide linker.
121. The polypeptide linker of claim 1 19, wherein said connector binds said first binding moiety to the carboxy terminus of said polypeptide linker.
122. The polypeptide linker of claim 119, wherein said connector covalently binds said first binding moiety to said polypeptide linker.
123. The polypeptide linker of claim 1 18 further comprising a second binding moiety.
124. The polypeptide linker of claim 123 further comprising a second polypeptide connector that binds said second binding moiety to said polypeptide linker.
125. The polypeptide linker of claim 124, wherein said connector binds said second binding moiety to the amino terminus of said polypeptide linker.
126. The polypeptide linker of claim 124, wherein said connector binds said second binding moiety to the carboxy terminus of said polypeptide linker.
127. The polypeptide linker of claim 124, wherein said connector covalently binds said second binding moiety to said polypeptide linker.
128. The polypeptide linker of claim 123 further comprising a first connector that covalently binds said first binding moiety to the amino terminus of said polypeptide linker and a second connector that covalently binds a second binding moiety to the carboxy terminus of said polypeptide linker.
129. The polypeptide linker of claim 128, wherein said first connector comprises the amino acid sequence AAS or AAQ and said second connector comprises the amino acid sequence set forth in SEQ ID NO:5.
130. The polypeptide linker of claim 123, wherein said first binding moiety or second binding moiety is selected from the group consisting of antibodies, single-chain Fv molecules, bispeciflc single chain Fv ((ScFV)2) molecules, domain antibodies, diabodies, triabodies, hormones, Fab fragments, F(ab')2 molecules, tandem scFv (taFv) fragments, cell surface receptors or ligands, aptamers, and biologically-active fragments thereof,.
131. The polypeptide linker of claim 123, wherein said first or second binding moiety specifically binds a protein selected from the group consisting of insulin-like growth factor 1 receptor (IGFlR), IGF2R, insulin-like growth factor (IGF), mesenchymal epithelial transition factor receptor (c-met), hepatocyte growth factor (FIGF), epidermal growth factor receptor (EGFR), epidermal growth factor (EGF), heregulin, fibroblast growth factor receptor (FGFR), platelet-derived growth factor receptor (PDGFR), platelet-derived growth factor (PDGF), vascular endothelial growth factor receptor (VEGFR), vascular endothelial growth factor (VEGF), tumor necrosis factor receptor (TNFR), tumor necrosis factor alpha (TNF-α), TNF-β, folate receptor (FOLR), folate, transferrin receptor (TfR), mesothelin, Fc receptor, c-kit receptor, c-kit, α4 integrin, P-selectin, sphingosine-1 -phosphate receptor-1 (SlPR), hyaluronate receptor, leukocyte function antigen-1 (LFA-I), CD4, CDl 1, CD18, CD20, CD25, CD27, CD52, CD70, CD80, CD85, CD95 (Fas receptor), CD106 (vascular cell adhesion molecule 1 (VCAMl), CD 166 (activated leukocyte cell adhesion molecule (ALCAM)), CDl 78 (Fas ligand), CD253 (TNF-related apoptosis-inducing ligand (TRAIL)), ICOS ligand, CCR2, CXCR3, CCR5, CXCL12 (stromal cell-derived factor 1 (SDF-I)), interleukin 1 (TL-I ), CTLA -4, receptors alpha and beta, MART-I, gplOO, MAGE-I , ephrin (Eph) receptor, mucosal addressin cell adhesion molecule 1 (MAdCAM-I), carcinoembryonic antigen (CEA), Lewisγ, MUC-I , epithelial cell adhesion molecule (EpCAM), cancer antigen 125 (CA125), prostate specific membrane antigen (PSMA), TAG-72 antigen, and fragments thereof.
132. The polypeptide linker of claim 131, wherein said EGFR is erythroblastic leukemia viral oncogene homolog (ErbB) receptor.
133. The polypeptide linker of claim 123, wherein said first or second binding moiety is alpha- fetoprotein (AFP) or an interferon, or a biologically-active fragment thereof.
134. The polypeptide linker of claim 123, wherein said first or second binding moiety is selected from the group consisting of natalizumab, infliximab, adalimumab, rituximab, alemtuzumab, bevacizumab, daclizumab, efalizumab, golimumab, certolizumab, trastuzumab, abatacept, etanercept, pertuzumab, cetuximab, panitumumab, and anakinra.
135. The polypeptide linker of claim 123, wherein said first or second binding moiety is a single- chain Fv molecule.
136. The polypeptide linker of claim 135, wherein said single-chain Fv molecule is human or humanized.
137. The polypeptide linker of claim 118 further comprising a diagnostic or therapeutic agent.
138. The polypeptide linker of claim 137, wherein said diagnostic agent is a detectable label.
139. The polypeptide linker of claim 138, wherein said detectable label is a radioactive, fluorescent, or heavy metal label.
140. The polypeptide linker of claim 137, wherein said therapeutic agent is a cytotoxic, cytostatic, or immunomodulatory agent.
141. The polypeptide linker of claim 140, wherein said cytotoxic agent is an alkylating agent, an antibiotic, an antineoplastic agent, an antiproliferative agent, an antimetabolite, a tubulin inhibitor, a topoisomerase I or Il inhibitor, a hormonal agonist or antagonist, an immunomodulator, a DNA minor groove binder, or a radioactive agent.
142. The polypeptide linker of claim 141, wherein said antineoplastic agent is selected from the group consisting of cyclophosphamide, camptothecin, homocamptothecin, colchicine, combrestatin, combrestatin, rhizoxin, dolistatin, ansamitocin p3, maytansinoid, auristatin, caleachimicin, methotrexate, 5-fluorouracil (5-FU), doxorubicin, paclitaxel, docetaxel, cisplatin, carboplatin, tamoxifen, raloxifene, letrozole, epirubicin, bevacizumab, pertuzumab, trastuzumab, and derivatives thereof.
143. The polypeptide linker of claim 140, wherein said agent is capable of binding to and killing a tumor cell or inhibiting tumor cell proliferation.
144. The polypeptide linker of claim 1 18 admixed with a pharmaceutically acceptable carrier, excipient, or diluent.
145. The polypeptide linker of claim 1 18, wherein said agent exhibits an in vivo half-life of between 6 hours and 7 days.
146. The polypeptide linker of claim 118, wherein said agent exhibits an in vivo half-life greater than 8 hours.
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AU2009234253A AU2009234253C1 (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof
EA201001625A EA022201B1 (en) 2008-04-11 2009-04-10 Agent capable for binding to tumor cell comprising human serum albumin (hsa) linker and use thereof
EP09730096.6A EP2288715B1 (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof
NZ589086A NZ589086A (en) 2008-04-11 2009-04-10 Human serum albumin (HSA) linkers and conjugates thereof
MX2010011145A MX2010011145A (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof.
CN200980121775.1A CN102057054B (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof
JP2011504215A JP5639039B2 (en) 2008-04-11 2009-04-10 Human serum albumin linker and its conjugates
PL09730096T PL2288715T3 (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof
CA2721093A CA2721093A1 (en) 2008-04-11 2009-04-10 Human serum albumin linkers and conjugates thereof
BRPI0911652-4A BRPI0911652A2 (en) 2008-04-11 2009-04-10 Human serum albumin binders and their conjugates
CN2009801545099A CN102282168A (en) 2008-11-18 2009-10-14 Human serum albumin linkers and conjugates thereof
US13/130,007 US8927694B2 (en) 2008-11-18 2009-10-14 Human serum albumin linkers and conjugates thereof
PCT/US2009/060721 WO2010059315A1 (en) 2008-11-18 2009-10-14 Human serum albumin linkers and conjugates thereof
JP2011536365A JP5677972B2 (en) 2008-11-18 2009-10-14 Human serum albumin linker and its conjugates
BRPI0921586A BRPI0921586A2 (en) 2008-11-18 2009-10-14 human serum albumin articulators and conjugates thereof
US12/757,801 US20110059076A1 (en) 2008-11-18 2010-04-09 Human serum albumin linkers and conjugates thereof
IL208598A IL208598A (en) 2008-04-11 2010-10-10 Human serum albumin linkers and conjugates thereof, kits and medicaments comprising the same, use thereof in the preparation of medicaments for treating a proliferative disease and method for making the same
ZA2010/08048A ZA201008048B (en) 2008-04-11 2010-11-10 Human serum albumin linkers and conjugates thereof
US14/582,719 US20150191545A1 (en) 2008-11-18 2014-12-24 Human serum albumin linkers and conjugates thereof
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