WO2009051399A2 - Novel compounds of reverse turn mimetics and the use thereof (1) - Google Patents

Novel compounds of reverse turn mimetics and the use thereof (1) Download PDF

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WO2009051399A2
WO2009051399A2 PCT/KR2008/006072 KR2008006072W WO2009051399A2 WO 2009051399 A2 WO2009051399 A2 WO 2009051399A2 KR 2008006072 W KR2008006072 W KR 2008006072W WO 2009051399 A2 WO2009051399 A2 WO 2009051399A2
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Prior art keywords
indazolyl
alkyl
substituted
independently selected
substituents independently
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PCT/KR2008/006072
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French (fr)
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WO2009051399A3 (en
Inventor
Jae Uk Chung
Hee-Kyung Jung
Kyung-Yun Jung
Min-Wook Jeong
Hyun-Ju La
Sang-Hak Lee
Hoe-Moon Kim
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Choongwae Pharma Corporation
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Priority to ES08839568.6T priority Critical patent/ES2509042T3/en
Priority to JP2010529859A priority patent/JP5400785B2/en
Priority to KR1020107010575A priority patent/KR101229504B1/en
Priority to CN2008801116629A priority patent/CN101827849B/en
Priority to MX2010004045A priority patent/MX2010004045A/en
Priority to AU2008312193A priority patent/AU2008312193B2/en
Priority to CA2702461A priority patent/CA2702461C/en
Priority to BRPI0818511-5A priority patent/BRPI0818511B1/en
Priority to EP08839568.6A priority patent/EP2212329B1/en
Publication of WO2009051399A2 publication Critical patent/WO2009051399A2/en
Publication of WO2009051399A3 publication Critical patent/WO2009051399A3/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/53Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with three nitrogens as the only ring hetero atoms, e.g. chlorazanil, melamine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00Drugs for skeletal disorders
    • A61P19/02Drugs for skeletal disorders for joint disorders, e.g. arthritis, arthrosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/02Antineoplastic agents specific for leukemia
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00

Definitions

  • the present invention relates generally to novel compounds of reverse-turn mimetics and their application in the treatment of medical conditions, e.g., cancer diseases, and pharmaceutical compositions comprising the mimetics.
  • combinatorial chemistry libraries were generally limited to members of peptide or nucleotide origin. While combinatorial libraries containing members of peptide and nucleotide origin are of significant value, there is still a need in the art for libraries containing members of different origin. For example, traditional peptide libraries to a large extent merely vary the amino acid sequence to generate library members. While it is well recognized that the secondary structures of peptides are important to biological activity, such peptide libraries do not impart a constrained secondary structure to its library members.
  • non-peptide compounds have been developed which more closely mimic the secondary structure of reverse-turns found in biologically active proteins or peptides.
  • U.S. Pat. No. 5,440,013 to Kahn and published PCT Applications Nos. WO94/03494, WO01/00210A1, and WO01/16135A2 to Kahn each disclose conformationally constrained, non-peptidic compounds, which mimic the three- dimensional structure of reverse-turns.
  • U.S. Pat. No. 5,929,237 and its continuation-in-part U.S. Pat. No. 6,013,458, both to Kahn disclose conformationally constrained compounds which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins. The synthesis and identification of conformationally constrained, reverse-turn mimetics and their application to diseases were well reviewed by Obrecht (Advances in Med. Chem., 4, 1-68, 1999).
  • c-Myc is known as one of the proto- oncogenes, and dysregulation of c-Myc is considered one of a series of oncogenic events required for mammalian tumorigenesis (Pelengaris S, Khan M. The many faces of c-MYC. Arch Biochem Biophys. 2003; 416:129-136). MYC dysregulation, via a variety of mechanisms, was also found to be associated with myeloid leukemias (Hoffman B, Amanullah A, Shafarenko M, Liebermann DA. The proto-oncogene c-Myc in hematopoietic development and leukemogenesis. Oncogene. 2002; 21 : 3414-3421).
  • c-Myc was found to rapidly induce acute myeloid leukemia (Hui Luo et al. "c- Myc rapidly induces acute myeloid leukemia in mice without evidence of lymphoma- associated antiapoptotic mutations," Blood, 1 October 2005, volume 106, Number 7, pp 2452-2461).
  • c-Myc can be upregulated in acute myeloid leukemia
  • the oncogenic function of c-Myc has been studied and its exact role in myeloid leukemogenesis has been studied.
  • Myc preferentially stimulated the growth of myeloid progenitor cells in methylcellulose and snowed that Myc is a critical downstream effector of myeloid leukemogenesis (ibid.).
  • c-Myc plays a critical role in myeloid leukemogenesis indicates that by inhibiting an activation of c-Myc protein, an acute myeloid leukemia can be cured or prevented.
  • cytochrome P450 enzymes of the cytochrome P450 (CYP) superfamily are the major determinants of half-life and execute pharmacological effects of many therapeutic drugs.
  • the human cytochrome P450 (CYP) 3 A subfamily includes CYP3A4, which is most abundant in the human liver ( ⁇ 40%) and metabolizes more than 50% of clinically used drugs (Shimada et al 1994; Rendic and Di Carlo 1997).
  • CYP3A4 Due to the key role of CYP3A4 in drug metabolism, significant inactivation of this enzyme could result in marked pharmacokinetic drug-drug interactions. Inhibition of CYP3A4 may cause severe drug toxicity through the enhanced exposure to coadministered drugs (Dresser et al 2000). For example, when irreversible CYP3A4 inhibitors such as erythromycin or clarithromycin are coadministered with terfenadine, astemizole, or pimozide patients may experience Torsades de pointes (a life-threatening ventricular arrhythmia associated with QT prolongation) (Spinier et al 1995; Dresser et al 2000). Cancer patients, at times, undergo multiple treatment regimes, which increases the risk of drug-drug interactions followed by adverse drug reactions.
  • Torsades de pointes a life-threatening ventricular arrhythmia associated with QT prolongation
  • the object of the present invention is to provide novel compounds which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins and have biological activity such as anti-cancer effect.
  • Another object of the present invention is to provide novel compounds which inhibit
  • Yet another object of the present invention is to provide novel compounds which can be used as pharmaceuticals, in particular having less CYP3A4 inhibitory activity (higher IC50).
  • Yet another object of the present invention is to provide novel compounds for a treatment or a prevention of acute myeloid leukemia through downregulation of expression of c-Myc.
  • the present invention is directed to a new type of conformationally constrained compounds and derivatives including prodrugs thereof, which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins.
  • This invention also discloses libraries containing such compounds, as well as the synthesis and screening thereof.
  • the compounds of the present invention have the following general Formula (I):
  • the reverse turn mimetic compound may be present as an isolated stereoisomer or a mixture of stereoisomers or as a pharmaceutically acceptable salt thereof.
  • Ri of compounds of Formula (I) is indazolyl or substituted indazolyl.
  • the compounds of this invention have the following general Formula (III):
  • Rj, R 4 , R 6 Xi, X 2 , and X 3 are defined in the following detailed description.
  • the present invention is also related to prodrugs using the libraries containing one or more compounds of Formula (I).
  • a prodrug is typically designed to release the active drug in the body during or after absorption by enzymatic and/or chemical hydrolysis.
  • the prodrug approach is an effective means of improving the oral bioavailability or i.v. administration of poorly water-soluble drugs by chemical derivatization to more water- soluble compounds.
  • the most commonly used prodrug approach for increasing aqueous solubility of drugs containing a hydroxyl group is to produce esters containing an ionizable group; e.g., phosphate group, carboxylate group, alkylamino group (Fleisher et ah, Advanced
  • (III) is Formula (III) as described above; one of Rj, R 4 , R 6 , Xi, X 2 , and X 3 is linked to R 7 via Y; Y is an oxygen, sulfur, or nitrogen in Ri, R 4 , or R 6 , or an oxygen in Xi, X 2 , or X 3 ; and R 7 is hydroxyalkyl, glycosyl, phosphoryloxymethyloxycarbonyl, substituted or unsubstituted piperidine carbonyloxy, or a salt thereof; or Y-R 7 is an amino acid residue, a combination of amino acid residues, phosphate, hemimalate, hemisuccinate, dimethylaminoalkylcarbamate, dimethylaminoacetate, or a salt thereof; and when not linked to R 7 : Ri, R 4 , R 6 , Xi, X 2 , and X 3 are defined in the following detailed description.
  • the prodrugs of the present invention are capable of serving as a substrate for a phosphatase, a carboxylase, or other enzymes and are thereby converted to compounds having general Formula (III).
  • the present invention is also directed to libraries containing one or more compounds of Formula (I) above, as well as methods for synthesizing such libraries and methods for screening the same to identify biologically active compounds.
  • the present invention further provides novel compounds which have less CYP3A4 inhibitory activity.
  • the present invention also provides novel compounds which have inhibition activity against Wnt signaling.
  • the present invention also provides novel compounds which can be used for the preparation of a medicament for a treatment or a prevention of acute myeloid leukemia.
  • the present invention provides novel compounds of reverse-turn mimetics.
  • the compounds of the present invention exhibit less CYP3A4 inhibitory activity (higher IC50) which allows the compounds as potential pharmaceuticals, especially when it is to be administered in combination with other drugs.
  • the compounds of the present invention showed strong inhibition activity against Wnt signaling.
  • the compounds inhibited the growth of AML cancer cells and it can be used in the treatment or prevention of an acute myeloid leukemia.
  • Figure 1 provides a general synthetic scheme for preparing revers-turn mimetics of the present invention.
  • Figure 2 shows an effect of test compounds (Compounds A, B, and C) on the CYP3A4 activity.
  • the graph is based on the measurement of IC 50 for the Compounds of the present invention of CYP3A4 inhibition assay, wherein inhibition of activity of CYP3A4 was measured at various concentrations of the compound to obtain the ICs 0 value.
  • Detailed procedures are disclosed in Example 1.
  • Figure 3 shows the results of the measurement Of IC 50 of Compound D for SW480 cells on TopFlash Reporter Gene Bioassay.
  • Figure 4 shows inhibition of growth of AML cancer cells by the test compounds according to the concentration of the test compounds (Compounds A and C).
  • One or both hydrogens of the amine group of the amidino may be replaced with one or two alkyl groups, as defined herein.
  • the alkyl-derivatized amidino radicals are also referred to as “alkylamidino” and “dialkylamidino,” respectively.
  • Cyano refers to the -CN radical.
  • Carboxy refers to the -COOR radical, wherein R is hydrogen or alkyl, as defined herein.
  • Acyl refers to the -COR radical, wherein R is alkyl, aryl, cycloalkyl, heterocyclyl, as defined herein.
  • R can be methyl, butenyl, cyclopropyl, and the like.
  • the alkyl or aryl can be optionally substituted with the substituents as described for an alkyl or an aryl group, respectively.
  • Exemplary acyl groups include, without limitation, phenylacyl, benzylacyl, Ci ⁇ acyl (e.g., acetyl) and the like.
  • Alkylsulfonate refers to -S(O) 2 -OR radical, wherein R is alkyl, as defined herein.
  • Amidosulfonate refers to the radical -OS(O) 2 -NR 2 , each R is independently hydrogen or alkyl.
  • Exemplary amidosulfonates include -OS(O) 2 NH 2 , -OS(O) 2 NHMe.
  • Aminocarbonyl refers to the radical -C(O)NR 2 , each R is independently hydrogen, alkyl, amino, cycloalkylalkyl, heterocyclyl, alkoxyalkyl, hydroxyalkyl, hydroxyl, alkoxy, arylalkyl, heterocyclylalkyl, or two Rs together with the nitrogen atom to which they are attached form a heterocyclyl, as defined herein.
  • the other R is Cl-4alkyl
  • aminocarbonyl can be represented by "C M alkylformamidyl"
  • 'W-formamidyl refers to the radical -NHC(O)H.
  • Phenyl sulfonyl refers to the -S(O) 2 -R radical, wherein R is phenyl, the phenyl can be further substituted with alkyl or chloro.
  • Phenylsulfonate refers to the -0-S(O) 2 -R radical, wherein R is phenyl, the phenyl can be further substituted with alkyl or chloro.
  • Alkylsulfonyl refers to the -S(O) 2 -R radical, wherein R is alkyl, as defined herein.
  • exemplary alkylsulfonyl radicals include methylsulfonyl.
  • Alkylthio refers to the -SR radical wherein R is alkyl, as defined herein.
  • Arylthio refers to the -SR radical wherein R is aryl, as defined herein.
  • the aryl group of the arylthio can be further substituted with alkyl or chloro.
  • Aryloxy refers to the -OR radical wherein R is aryl, as defined herein.
  • the aryl group can be further substituted with alkyl, alk ⁇ xy and the like.
  • Acyloxyalkyl refers to the -R'-OC(O)-R radical, wherein R is alkyl, aryl, cycloalkyl, heterocyclyl, as defined herein; and R' is an alkyl.
  • One or both hydrogens of the amine group of the guanidino may be replaced with one or two alkyl groups, as defined herein.
  • the alkyl-derivatized guanidine radicals are also referred to as “alkylguanidino” and “dialkyl guanidino,” respectively.
  • Niro refers to the -NO 2 radical.
  • Alkyl refers to a straight or branched hydrocarbon chain radical consisting solely of carbon and hydrogen atoms.
  • An alkyl may be saturated (containing carbons linked together by single bonds only) or unsaturated (containing carbons linked together by at least one double bond or triple bond.)
  • An alkyl having one to twelve carbon atoms is also referred to as “lower chain alkyl moieties" and can be presented by "Ci.i 2 alkyl.”
  • an alkyl may comprise one to four carbon atoms and be represented by "Ci.
  • an alkyl may comprise two to five carbon atoms and be represented by "C 2-5 alkyl.”
  • An alkyl is attached to the rest of the molecule by a single bond. Examples of saturated alkyls include, without limitation, methyl, ethyl, n-propyl,
  • alkyl 1-methylethyl (/so-propyl), n-butyl, n-pentyl, 1 , 1 -dimethylethyl (/-butyl), 3-methylhexyl, 2-methylhexyl, and the like.
  • unsaturated alkyls include, without limitation, ethenyl (i.e., vinyl), prop-1-enyl (i.e., allyl), but-1-enyl, pent-1-enyl, penta-l,4-dienyl, ethynyl (i.e., acytylenyl), prop-1-ynyl and the like.
  • An alkyl may also be a monocyclic or bicyclic hydrocarbon ring radical, which may include fused or bridged ring systems.
  • a cyclic alkyl is also referred to as "cycloalkyl.”
  • a cycloalkyl may comprise three to six carbon atoms and be represented by "C 3 - 6 cycloalkyl.”
  • monocyclic cycloalkyl radicals include, e.g., cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl.
  • An unsaturated cycloalkyl contains an endo double bond (i.e., a double bond in the ring).
  • Examples of an unsaturated cycloalkyl include cyclohexenyl.
  • Examples of bicyclic cycloalkyl radicals include, for example, norbornyl (i.e., bicyclo[2.2.1]heptyl), 7,7-dimethyl-bicyclo[2.2.1]heptyl, and the like.
  • alkyl is meant to include both alkyl and "substituted alkyl,” which refers to an alkyl radical in which one or more hydrogen atoms are replaced by one or more substituents independently selected from: acyl, amidino, alkylamidino, dialkylamidino, alkoxy, aryl, cyano, cycloalkyl, guanidino, alkylguanidino, dialkylguanidino, halo, heterocyclyl, hydrazinyl, hydroxyl, nitro, -OC(O)-R", -N(R 1 ') 2 , -C(O)OR 11 , -C(O)N(R 1 ') 2 , -N(R U )C(O)OR", -N(R")C(O)R", - N(R")S(O) t R" (where t is 1 or 2) -S(O) 1 OR
  • Alkoxy refers to a radical represented by the formula alkyl-O-, wherein alkyl is as defined herein.
  • the alkyl portion can be further substituted by one or more halogen.
  • An alkoxy may also be represented by the number of the carbons in the alkyl group, for example, Ci -6 alkoxy or Ci. 3 alkoxy.
  • Aryl refers to a radical derived from an aromatic monocyclic or bicyclic ring system by removing a hydrogen atom from a ring carbon atom.
  • the aromatic monocyclic or bicyclic hydrocarbon ring system comprises six to twelve carbon atoms (i.e., C 6 -i 2 aryl), wherein at least one of the rings in the ring system is fully unsaturated, i.e., it contains a cyclic, delocalized (4n+2) ⁇ -electron system in accordance with the Huckel theory.
  • one or two ring atoms of the aryl may be heteroatoms selected from nitrogen, oxygen or sulfur. Examples of aryl radicals include, but are not limited to, phenyl and naphthyl.
  • aryl is meant to include both aryl and "substituted aryl,” which refers to an aryl radical in which one or more hydrogen atoms are replaced by one or more substituents independently selected from: alkyl, acyl, amidino, amidosulfonate, alkoxy, aryloxy, cyano, guanidino, alkylguanidino, dialkylguanidino, halo, hydrazinyl, hydroxyl, nitro, heterocyclyl, -OC(O)-R 1 ', -N(R 1 ') 2 ,
  • Arylalkyl refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more aryl groups, as defined herein.
  • arylalkyls include from 7 to 15 carbons and can be represented by C 7- i 5 arylalkyl.
  • arylalkyl is is substituted with one aryl or two aryl groups, the latter being also referred to as "diarylalkyl” or “bisarylalkyl.”
  • arylCi ⁇ alkyl include, but are not limited to arylmethyl, arylethyl, arylpropyl, arylbutyl, bisarylmethyl, bisarylethyl, bisarylpropyl, bisarylbutyl.
  • Exemplary arylalkyl radicals include, without limitation, benzyl, naphthylmethyl, diphenylmethyl, 3,3- bisphenylpropyl and the like.
  • arylalkyl is meant to include both arylalkyl and "substituted arylalkyl,” wherein the alkyl part and/or the aryl part of the arylalkyl radical may be substituted as described herein for the alkyl radical and aryl radical, respectively.
  • Cycloalkylalkyl refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more c groups, as defined herein.
  • cycloalkylalkyl is cycloalkylCi -2 alkyl such as cycloalkylmethyl, cycloalkyl ethyl and the like.
  • cycloalkylalkyl radicals include, without limitation, cyclohexylalkyl (e.g., cyclohexylmethyl and cyclohexyl ethyl), and cyclopentylalkyl (e.g., cyclopentylmethyl and cyclopentylethyl) and the like.
  • cycloalkylalkyl is meant to include both cycloalkylalkyl and "substituted cycloalkylalkyl,” wherein the alkyl part and/or the cycloalkyl part of the cycloalkylalkyl radical may be substituted as described herein for the alkyl radical and cycloalkyl radical, respectively.
  • Glycosyl refers to a radical by removing the hemiacetal hydroxyl group from a cyclic form of a monosaccharide (e.g., glucose), disaccharide, oligosaccharide (compring three to ten monosaccharides), or polysaccharide (comprising more than ten monosaccharides) .
  • a monosaccharide e.g., glucose
  • disaccharide e.g., oligosaccharide (compring three to ten monosaccharides)
  • polysaccharide comprising more than ten monosaccharides
  • Halo or halogen refers to fluoro, chloro, bromo or iodo radicals.
  • Haloalkyl refers to an alkyl radical, as defined herein, which is substituted by one or more halo radicals, as defined herein.
  • Exemplary haloalkyls include, without limitation: trifluoromethyl, difluoromethyl, trichloromethyl, 2,2,2-trifluoroethyl, l-fluoromethyl-2-fluoroethyl, 3-bromo-2-fluoropropyl, l-bromomethyl-2-bromoethyl, and the like.
  • An alkyl substituted with one or more fluoro is also referred to as "perfluoroalkyl," for example, The alkyl part of the haloalkyl radical may be optionally substituted as defined herein for an alkyl group.
  • Heterocyclyl refers to a stable heterocyclic ring radical that comprises two to eleven carbon atoms and from one to three heteroatoms selected from nitrogen, oxygen and sulfur.
  • the heterocyclyl contains one or two heteroatoms.
  • the heterocyclyl radical may be a monocyclic or bicyclic ring system, which may include fused or bridged ring systems.
  • the heterocyclyl may be a 5-, 6- or 7-membered monocyclic ring.
  • the heterocyclyl may be an 8-, 9-, 10-, 11- or 12-membered fused bicyclic ring.
  • the heteroatoms in the heterocyclyl radical may be optionally oxidized.
  • the heterocyclyl radical may be non-aromatic or aromatic (i.e., at least one ring in the heterocyclyl radical has a delocalized (4n+2) ⁇ -electron system in accordance with the Huckel theory.)
  • the heterocyclyl may be attached to the rest of the molecule through any atom of the ring(s).
  • non-aromatic heterocyclyl radicals include, but are not limited to, dioxolanyl, decahydroisoquinolyl, imidazolinyl, imidazolidinyl, isothiazolidinyl, isoxazolidinyl, morpholinyl, octahydroindolyl, octahydroisoindolyl, 2-oxopiperazinyl, 2-oxopiperidinyl, 2-oxopyrrolidinyl, oxazolidinyl, piperidinyl (also referred to as "piperidyl”), piperazinyl, 4-piperidonyl, 3-pyrrolinyl, pyrrolidinyl, pyrazolidinyl, quinuclidinyl, thiazolidinyl, tetrahydrofuryl, trithianyl, tetrahydropyranyl, thiomorpholinyl, and thiamorpholinyl
  • aromatic heterocyclyl radicals include, but are not limited to, azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodioxolyl, benzofuranyl, benzooxazolyl, benzoisoxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[Z?][l,4]dioxepinyl, benzo[b][l,4]oxazinyl, 1 ,4-benzodioxanyl, benzoxazolyl, benzodioxolyl, benzodioxinyl, benzopyranyl, benzopyrazolyl, benzofuranyl, benzofuranonyl, benzothienyl (benzothiophenyl), benzothieno[3,2-d]pyrimidinyl, benzotriazolyl, carbazolyl, chromone, c
  • heterocyclyl is meant to include both heterocyclyl and "substituted heterocyclyl,” which refers to a heterocyclyl radical substituted by one or more substituents selected from alkyl, acyl, oxo (e.g., pyridinonyl, pyrrolidonyl), aryl, arylalkyl, acyloxyalkyl, amidino, alkoxy, cyano, guanidino, alkylguanidino, dialkylguanidino, halo, hydrazinyl, hydroxyl, nitro, -OC(O)-R' 1 , -N(R ⁇ ) 2 , -C(O)OR 11 , -C(O)N(R 1 % -N(R ⁇ )C(O)OR", -N(R 11 JC(O)R 11 , - N(R 11
  • Heterocyclylalkyl refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more heterocyclyl groups, as defined herein. If the heterocyclyl is a nitrogen-containing heterocyclyl, the heterocyclyl may be attached to the alkyl radical at the nitrogen atom. In certain embodiments, the alkyl part of the heterocyclylalkyl contains 1-4 carbon atoms and can be represented by Examples of heterocyclylalkyl radicals include, without limitation, morpholinylalkyl such as morpholinylmethyl, piperidylalkyl such as piperidylmethyl, imidazolidinylalkyl such as imidazolidinylmethyl and the like.
  • heterocyclylalkyl radicals wherein the heterocyclyl part is aromatic, include, but are not limited to: pyridylmethyl, pyridylethyl, pyridylpropyl, pyridylbutyl, quinolinylmethyl, quinolinylethyl, quinolinylpropyl, quinolinylbutyl, indazolylmethyl, indazolylethyl, indazolylpropyl, indazolylbutyl, benzpyrazolylmethyl, benzpyrazolylethyl, benzpyrazolylpropyl, benzpyrazolylbutyl, isoquinolinylmethyl, isoquinolinyl ethyl, isoquinolinylpropyl, isoquinolinylbutyl, benzotriazolylmethyl, benzotriazolylethyl, benzotriazolylpropyl, benzotriazolylbut
  • heterocyclylalkyl is meant to include both heterocyclylalkyl and “substituted heterocyclylalkyl,” wherein the alkyl part and/or the heterocyclyl part of the heterocyclylalkyl radical may be substituted as described herein for the alkyl radical and the heterocyclyl radical, respectively.
  • the compounds, or their pharmaceutically acceptable salts may contain one or more asymmetric centers and may thus give rise to enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)- or (S)- or, as (D)- or (L)- for amino acids.
  • the compounds described herein contain olefinic double bonds or other centers of geometric asymmetry, and unless specified otherwise, it is intended that the compounds include both E and Z geometric isomers (e.g., cis or trans.)
  • all possible isomers, as well as their racemic and optically pure forms, and all tautomeric forms are also intended to be included.
  • amino acid is meant to include naturally occurring ⁇ -amino acids and/or unnatural amino acids, such as ⁇ -amino acids and homoamino acids.
  • amino acids include, but are not limited to: alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, valine, phosphoserine, phosphothreonine, phosphotyrosine, 4-hydroxyproline, hydroxyl ysine, demosine, isodemosine, gamma-carboxyglutamate, hippuric acid, octahydroindole-2-carboxylic acid, statine, l,2,3,4-tetrahydroisoquinoline-3-
  • amino acid residue or “amino acid side chain moiety” refers to the portion of an amino acid that remains after losing a water molecule (or alcohol) when the amino acid is condensed with a molecule.
  • an amino acid is condensed with a molecule, including a compound of any of Formulae (I)-(IV), by forming a peptide bond.
  • the amino functional group of the amino acid can be condensed with a carboxylic acid group or its reactive equivalent (e.g., carboxylic anhydride) of the molecule.
  • carboxylic acid functional group of the amino acid can be condensed with an amine group of the molecule.
  • amino acid residues or “amino acid side chain moiety” include, but are not limited to, residues of alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, valine, phosphoserine, phosphothreonine, phosphotyrosine, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, gamma-carboxyglutamate, hippuric acid, octahydroindole-2- carboxylic acid, statine, l,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, penicillamine
  • amino acid side chain derivative refers to a derivative of any of the amino acid side chain moiety as described in Table 1.
  • the amino acid side chain derivative is alkyl, acyl, alkoxy, aryl, arylalkyl, heterocyclyl, or heterocyclylalkyl, as defined herein.
  • stereoisomer refers to a compound made up of the same atoms bonded by the same bonds but having different three-dimensional structures, which are not interchangeable. It is therefore contemplated that various stereoisomers and mixtures thereof and includes “enantiomers,” which refers to two stereoisomers whose molecules are nonsuperimposeable mirror images of one another.
  • enantiomers refers to two stereoisomers whose molecules are nonsuperimposeable mirror images of one another.
  • tautomer refers to a proton shift from one atom of a molecule to another atom of the same molecule.
  • Prodrugs is meant to indicate a compound that may be converted under physiological conditions or by solvolysis to a biologically active compound described herein.
  • prodrug refers to a precursor of a biologically active compound that is pharmaceutically acceptable.
  • a prodrug may be inactive when administered to a subject, but is converted in vivo to an active compound, for example, by hydrolysis.
  • the prodrug compound often offers advantages of solubility, tissue compatibility or delayed release in a mammalian organism (see, Bundgard, H., Design of Prodrugs (1985), pp. 7-9, 21-24 (Elsevier, Amsterdam).
  • a discussion of prodrugs is provided in Higuchi, T., et al, "Pro-drugs as Novel
  • prodrug is also meant to include any covalently bonded carriers, which release the active compound in vivo when such prodrug is administered to a mammalian subject.
  • Prodrugs of an active compound, as described herein may be prepared by modifying functional groups present in the active compound in such a way that the modifications are cleaved, either in routine manipulation or in vivo, to the parent active compound.
  • Prodrugs include compounds wherein a hydroxyl, amino or mercapto group is bonded to any group that, when the prodrug of the active compound is administered to a mammalian subject, cleaves to form a free hydroxyl, free amino or free mercapto group, respectively.
  • prodrugs examples include, but are not limited to, acetate, succinate, phosphate, hemisuccinate, malate, hemimalate, formate and benzoate derivatives of alcohol or amine functional groups in the active compounds and the like.
  • Other examples of the prodrugs include, but are not limited to, amino acid derivatives of alcohol or amine functional groups in the active compounds and the like.
  • the present invention is directed to confoi ⁇ nationally constrained compounds that mimic the secondary structure of reverse-turn regions of biological peptide and proteins (also referred to herein as "reverse-turn mimetics,” and is also directed to chemical libraries relating thereto.
  • the reverse-turn mimetic structures of the present invention are useful as bioactive agents, including (but not limited to) use as diagnostic, prophylactic and/or therapeutic agents.
  • the reverse-turn mimetic structure libraries of this invention are useful in the identification of bioactive agents having such uses, hi the practice of the present invention, the libraries may contain from tens to hundreds to thousands (or greater) of individual reverse-turn structures (also referred to herein as "members").
  • a reverse-turn mimetic structure is disclosed having the following Formula (I):
  • the reverse turn mimetic compound may be present as an isolated stereoisomer or a mixture of stereoisomers or as a pharmaceutically acceptable salt thereof.
  • Ri of compounds of Formula (I) is indazolyl or substituted indazolyl.
  • Ri of compounds of Formula (I) may be indazolyl or substituted indazolyl having one or more substituents independently selected from Ci -7 alkyl, C 6- i 2 aryl, C 7- i 5 arylalkyl, substituted C 7 .
  • R 2 , R 4 and R 5 of compounds of Formula (I) are independently selected from the group consisting of:
  • R 3 is selected from the group consisting of: hydrogen; Ci -12 alkyl or substituted Ci.i 2 alkyl having one or more substituents independently selected from: halogen, cyano, C t-6 alkoxy, amino, guanidino, C i ⁇ alkyl guanidino, diCi ⁇ alkyl guanidino, amidino, Ci ⁇ alkylamidino, diCi-4alkylamidino, Ci-salkylamino, diCi.salkyl amino, and hydroxyl;
  • C 6- i 3 heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C 6 -i 3 heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci -6 alkyl, Ci -6 alkoxy, cyano, and hydroxyl; and
  • R 2 , R 4 and R 5 of compounds of Formula (I) are independently selected from the group consisting of: aminoC 2-5 alkyl; guanidinoC 2-5 alkyl; Ci ⁇ alkylguanidinoC 2-5 alkyl, diCi_ 4alkylguanidino-C 2-5 alkyl; amidinoC 2-5 alkyl; C i ⁇ alkylamidinoC ⁇ alkyl; diCi.
  • N-amidinopiperazinyl-N-Co ⁇ alkyl N-amidinopiperidinylCi-4alkyl
  • R 3 is selected from the group consisting of: hydrogen; aminoC 2-5 alkyl; guanidinoC 2 .salkyl; Ci- 4 alkylguanidinoC 2 . 5 alkyl, diCj. 4 alkylguanidino-C 2-5 alkyl; amidinoC 2-5 alkyl; Ci- 4 alkylamidinoC 2-5 alkyl; diCi. 4alkylamidinoC 2-5 alkyl; Ci -3 alkoxy;
  • Ri of compounds of Formula (I) is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C 7- i 5 arylalkyl having one or more substituents independently selected from amino and nitro.
  • Ri of compounds of Formula (I) is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- 1 H-indazolyl, 3-cyclopropylcarbonyl-lH- indazolyl, 1 -hydroxyethyl- 1 H-indazolyl, 1 H-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-l H-indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro-l H-indazolyl, 6-chloro-lH- indazolyl, 3 -phenyl- 1 H-indazolyl, l-benzyl-3 -phenyl- 1 H-indazolyl, 1-nitrobenzyl-lH- indazolyl, 1 -aminobenzyl- 1 H-indazolyl, 2-methyl-3-cyclopropylcarbonyl-2H-ind
  • R 2 , R 4 and R 5 of compounds of Formula (I) are independently selected from the group consisting of:
  • R 3 is selected from the group consisting of: hydrogen
  • heterocyclyl or substituted heterocyclyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci ⁇ alkylamino, Ci-
  • arylCi-_ialkyl is benzyl, acetylenylbenzyl, hydroxybenzyl, bisphenylmethyl, naphthylmethyl or 3,3-bisphenylpropyl; and is benzotriazolylC M alkyl, benzopyrazolylC M alkyl, indazolylC M alkyl, quinolinylCi- 4 alkyl, benzimidazolylCi- 4 alkyl, or
  • the reverse turn mimetic compound of this invention has a structure of Formula (II):
  • Ri of compounds of Formula (II) is indazolyl or substituted indazolyl and it may be indazolyl or substituted indazolyl having one or more substituents independently selected from Ci -7 alkyl, C 6-)2 aryl, C 7- i 5 arylalkyl, substituted C 7- i 5 arylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci.i O acyl, amino, halogen, nitro, C 2- i 0 acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl,
  • C ⁇ -nheterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C 6- i 3 heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, cyano, and hydroxyl; and
  • Ci -6 alkoxy C ⁇ -nheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted Ce-nheterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from:
  • Ri of compounds of Formula (II) may be indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C 7 -i 5 arylalkyl having one or more substituents independently selected from amino and nitro, and specific examples of Ri may include, but not limited thereto
  • R 2 and R 5 are independently Ci_i 2 alkyl, C 6- i 2 aryl, C 7- i 2 arylalkyl, C 6-I iheterocyclylalkyl, hydroxybenzyl, or substituted benzyl having a substituents selected from phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, and diethyl-phosphono- acetamido;
  • R 3 is hydrogen or Ci.i 2 alkyl; and R 4 is Ci-i 2 alkyl, C 7- i 2 arylalkyl, or C 2- i 2 alkenyl.
  • reverse-turn mimetic structures having Formula (I) may be prepared by sequential coupling of the individual component pieces either stepwise in solution or by solid phase synthesis as commonly practiced in solid phase peptide synthesis, followed by cyclizing to yield the reverse-turn mimetic structures of this invention.
  • first and second component pieces are coupled to form a combined first-second intermediate
  • third and/or fourth component pieces are coupled to form a combined third-fourth intermediate (or, if commercially available, a single third intermediate may be used)
  • the combined first-second intermediate and third-fourth intermediate (or third intermediate) are then coupled to provide a first-second-third-fourth intermediate (or first-second-third intermediate) which is cyclized to yield the reverse-turn mimetic structures of this invention.
  • Specific component pieces and the assembly thereof to prepare compounds of the present invention are illustrated in Figure 1.
  • a "first component piece” may have the following formula Sl : wherein Ri is as defined above, and R is a protective group suitable for use in peptide synthesis, where this protection group may be joined to a polymeric support to enable solid- phase synthesis.
  • Suitable R groups include alkyl groups and, in a preferred embodiment, R is a methyl group.
  • one of the R groups is a polymeric (solid) support, indicated by "Pol" in the Figure.
  • Such first component pieces may be readily synthesized by reductive animation Of H 2 N-C-Ri with CH(OR) 2 -CHO, or by a displacement reaction between H 2 N-C-Ri and CH(OR) 2 -CH 2 -LG (wherein LG refers to a leaving group, e.g., a halogen (Hal) group).
  • a "second component piece” may have the following formula S2:
  • P is an amino protection group suitable for use in peptide synthesis
  • Li is hydroxyl or a carboxyl-activation group
  • R 2 is as defined above.
  • Preferred protection groups include t-butyl dimethylsilyl (TBDMS), t-butyloxycarbonyl (BOC), methyloxycarbonyl (MOC), 9H-fluorenylmethyloxycarbonyl (FMOC), and allyloxycarbonyl (Alloc).
  • TDMS t-butyl dimethylsilyl
  • BOC t-butyloxycarbonyl
  • MOC methyloxycarbonyl
  • FMOC 9H-fluorenylmethyloxycarbonyl
  • Alloc allyloxycarbonyl
  • Li is a carboxyl-activation group
  • Suitable activated carboxylic acid groups include acid halides where Li is a halide such as chloride or bromide, acid anhydrides where Li is an acyl group such as acetyl, reactive esters such as N-hydroxysuccinimide esters and pentafluorophenyl esters, and other activated intermediates such as the active intermediate formed in a coupling reaction using a carbodiimide such as dicyclohexylcarbodiimide (DCC).
  • DCC dicyclohexylcarbodiimide
  • the reverse-turn mimetic compounds of Formula (I) may be synthesized by reacting a first component piece with a second component piece to yield a combined first-second intermediate, followed by reacting the combined first-second intermediate with third component pieces sequentially to provide a combined first-second- third-fourth intermediate, and then cyclizing this intermediate to yield the reverse-rum mimetic structure.
  • the reverse-turn mimetic structures of the present invention are useful as bioactive agents, such as diagnostic, prophylactic, and therapeutic agents.
  • the reverse- turn mimetic structures of the present invention may be used for modulating a cell signaling transcription factor related peptides in a warm-blooded animal, by a method comprising administering to the animal an effective amount of the compound of Formula (I).
  • reverse-turn mimetic structures of the present invention may also be effective for inhibiting peptide binding to PTB domains in a warm-blooded animal; for modulating G protein coupled receptor (GPCR) and ion channel in a warm-blooded animal; for modulating cytokines in a warm-blooded animal.
  • GPCR G protein coupled receptor
  • the compounds of the Formula (I), especially compounds of Formula (III) are effective for inhibiting or treating disorders modulated by Wnt-signaling pathway, such as cancer.
  • Formula (III) is shown above, wherein each of Ri, R 4 , and R 6 is the same or different and independently an amino acid side chain moiety or an animo acid side chain derivative, Xi may be hydrogen, hydroxyl, or halogen, and X 2 and X 3 may be independently hydrogen, hydroxyl, or any groups that may make the compound a prodrug, such as phosphate, carboxylate, carbamate and substituted amine.
  • Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from Ci -7 alkyl, C 6 -i 2 aryl, C 7- isarylalkyl, substituted C 7- isarylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci-i O acyl, amino, halogen, nitro, C 2- i 0 acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl, hydroxyalkyl, cyanoCi.
  • alkyl, morpholinylCi -3 alkyl, alkoxyalkylamide and cycloalkylcarbonyl and specific examples of the substituents may be methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C 7- i 5 arylalkyl having one or more substituents independently selected from amino and nitro;
  • R 4 is Ci -6 alkyl, Ci -6 alkoxy, C 2 . 6 alkenyl or perfluoroCi. 6 alkyl;
  • R 6 is C ⁇ - ⁇ aryl or substituted C 6- i 2 aryl having one or more substituents independently selected from the group consisting of: halogen, hydroxyl, cyano, Ci -6 alkyl, acetyleneyl and Ci -6 alkoxy; or Cs- ⁇ heterocyclyl or substituted C 5- i 2 heterocyclyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci -6 alkyl, and Ci -6 alkoxy;
  • Xi is hydrogen, hydroxyl or halogen; and each of X 2 and X 3 is independently hydrogen, hydroxyl, phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, diethyl-phosphono-acetamido or halogen.
  • Ri is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- IH- indazolyl, 3-cyclopropylcarbonyl-lH-indazolyl, 1 -hydroxyethyl- lH-indazolyl, 1 H-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-l H-indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro- 1 H-indazolyl, 6-chloro-l H-indazolyl, 3-phenyl-l H-indazolyl, 1 -benzyl-3 -phenyl- IH- indazolyl, 1-nitrobenzyl-l H-indazolyl, 1-aminobenzyl-l H-indazolyl, 2-methyl-3- cyclopropylcarbonyl-2H-indazolyl
  • R 6 is phenyl or substituted phenyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci. 6 alkyl, acetylenyl and Ci -6 alkoxy; or pyridyl or substituted pyridyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, and Cj. 6 alkoxy.
  • prodrugs generally increase aqueous solubility and thus bioavailability of compounds having general Formula (I).
  • the prodrugs of the present invention have the following general Formula (IV):
  • Y is an oxygen, sulfur, or nitrogen in Ri, R 4 , or R 6 , or an oxygen in Xi, X 2 , or X 3 ;
  • R 7 is hydroxyalkyl, glycosyl, phosphoryloxymethyloxycarbonyl, substituted or unsubstituted piperidine carbonyloxy, or a salt thereof; or Y-R 7 is an amino acid residue, a combination of amino acid residues, phosphate, hemimalate, hemisuccinate, dimethylaminoalkylcarbamate, dimethylaminoacetate, or a salt thereof; and when not linked to R 7 : Ri, R 4 , R 6 , Xi, X 2 , and X 3 are defined as they are in Formula (III).
  • libraries containing reverse-turn mimetic structures of the present invention are disclosed.
  • the libraries of the present invention may be screened to identify individual members having bioactivity.
  • screening of the libraries for bioactive members may involve; for example, evaluating the binding activity of the members of the library or evaluating the effect the library members have on a functional assay. Screening is normally accomplished by contacting the library members (or a subset of library members) with a target of interest, such as, for example, an antibody, an enzyme, a receptor or a cell line.
  • a target of interest such as, for example, an antibody, an enzyme, a receptor or a cell line.
  • Bioactive library members or “bioactive mimetics”.
  • a bioactive mimetic may be a library member which is capable of binding to an antibody or receptor, or which is capable of inhibiting an enzyme, or which is capable of eliciting or antagonizing a functional response associated, for example, with a cell line.
  • the screening of the libraries of the present invention determines which library members are capable of interacting with one or more biological targets of interest.
  • the bioactive mimetic or mimetics may then be identified from the library members.
  • bioactive mimetic(s) from the library yields reverse-turn mimetic structures which are themselves biologically active, and thus are useful as diagnostic, prophylactic or therapeutic agents, and may further be used to significantly advance identification of lead compounds in these fields.
  • Synthesis of the peptide mimetics of the library of the present invention may be accomplished using known peptide synthesis techniques, in combination with the first, second and third component pieces of this invention. More specifically, any amino acid sequence may be added to the N-terminal and/or C-terminal of the conformationally constrained reverse-turn mimetic.
  • the mimetics may be synthesized on a solid support (such as PAM resin) by known techniques (see, e.g., John M. Stewart and Janis D. Young, Solid Phase Peptide Synthesis, 1984, Pierce Chemical Comp., Rockford, 111.) or on a silyl-linked resin by alcohol attachment (see Randolph et al., J. Am Chem. Soc. 1 17:5712-14, 1995).
  • a combination of both solution and solid phase synthesis techniques may be utilized to synthesize the peptide mimetics of this invention.
  • a solid support may be utilized to synthesize the linear peptide sequence up to the point that the conformationally constrained reverse-turn is added to the sequence.
  • a suitable conformationally constrained reverse-turn mimetic structure which has been previously synthesized by solution synthesis techniques may then be added as the next "amino acid" to the solid phase synthesis (i.e., the conformationally constrained reverse-turn mimetic, which has both an N-terminus and a C-terminus, may be utilized as the next amino acid to be added to the linear peptide).
  • the conformationally constrained reverse-turn mimetic structures Upon incorporation of the conformationally constrained reverse-turn mimetic structures into the sequence, additional amino acids may then be added to complete the peptide bound to the solid support.
  • the linear N-terminus and C-terminus protected peptide sequences may be synthesized on a solid support, removed from the support, and then coupled to the conformationally constrained reverse-turn mimetic structures in solution using known solution coupling techniques.
  • methods for constructing the libraries are disclosed.
  • Traditional combinatorial chemistry techniques see, e.g., Gallop et al., J. Med. Chem. 37:1233-1251, 1994) permit a vast number of compounds to be rapidly prepared by the sequential combination of reagents to a basic molecular scaffold.
  • C ombinatorial techniques have been used to construct peptide libraries derived from the naturally occurring amino acids. F or example, by taking 20 mixtures of 20 suitably protected and different amino acids and coupling each with one of the 20 amino acids, a library of 400 (i.e., 20 2 ) dipeptides is created. Repeating the procedure seven times results in the preparation of a peptide library comprised of about 26 billion (i.e., 20 8 ) octapeptides.
  • synthesis of the peptide mimetics of the library of the present invention may be accomplished using known peptide synthesis techniques, for example, the General Scheme of Reverse-Turn Mimetic Library, as follows:
  • a bromoacetal resin (37mg, 0.98 mmol/g) and a solution of Ri -amine in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates.
  • the reaction mixture was shaken at 60 0 C using a rotating oven [Robbins Scientific] for 12 hours.
  • the resin was washed with DMF, MeOH, and then DCM
  • the resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
  • Table 2 shows the compounds which were prepared according to the present invention, of which representative preparation is given in Preparation Examples.
  • the libraries of the present invention were screened for bioactivity by various techniques and methods.
  • the screening assay may be performed by (1) contacting the mimetics of a library with a biological target of interest, such as a receptor, to allow binding between the mimetics of the library and the target to occur, and (2) detecting the binding event by an appropriate assay, such as the calorimetric assay disclosed by Lam et al. (Nature 354:82-84, 1991) or Griminski et al. (Biotechnology 12: 1008-101 1, 1994) (both of which are incorporated herein by reference).
  • the library members are in solution and the target is immobilized on a solid phase.
  • the library may be immobilized on a solid phase and may be probed by contacting it with the target in solution.
  • Inhibition activity against Wnt signaling was measured by the TopFlash reporter.
  • the lower IC50 value means the higher inhibition activity.
  • a compound can be classified as active if IC50 is 10 ⁇ M or below. When IC50 is 5 ⁇ 10 ⁇ M, the compound can be a candidate for a pharmaceutical. A compound is deemed strong if IC50 is l ⁇ 5 ⁇ M, and a compound is deemed very strong if IC50 is 1 ⁇ M or below.
  • Table 3 below shows compounds for bioactivity test selected from the library of the present invention and IC50 values thereof, which were measured by the Reporter gene assay as described in Example 2.
  • Table 4 shows compounds for bioactivity test selected from the library of the present invention and IC50 values thereof, which were measured by the P450 CYP3A4 Inhibitory Activity Screening as described in Example 1. [Table 4]
  • the present invention is also related to methods for preventing or treating an acute myeloid leukemia comprising administering to the subject the compound having Formula (I) above.
  • the present invention provides compounds that inhibit the formation of a complex of ⁇ -catenin, p300 and TCF binding onto c-Myc protein and formation of a complex of ⁇ -catenin, p300 and TCF binding onto survivin promoter.
  • the present invention provides compounds, in particular those having Formula (II), that control c-Myc protein. It has been found according to the present invention that compounds of general
  • Formula (I) affect the cell proliferation and inhibit the growth of AML cancer cells, as described in Example 3.
  • GI50 of MV-4-11 shows cell growth inhibition activity against AML cancer cells. The lower GI50 value means the higher inhibition activity.
  • a compound can be classified as active if GI50 is 10 ⁇ M or less. When GI50 is 5 ⁇ 10 ⁇ M, the compound can be a candidate for a pharmaceutical. A compound is deemed strong if GI 50 is l ⁇ 5 ⁇ M, and a compound is deemed very strong if GI 50 is 1 ⁇ M or below. Most of the compounds of the present invention showed GI50 of 5 ⁇ M or below, that means they have strong inhibition activity against AML cancer cells.
  • Table 5 below shows compounds for bioactivity test selected from the library of the present invention and GI50 values thereof, which were measured by Cell Growth Inhibition Assay as described in Example 3.
  • Step 1 A bromoacetal resin (37mg, 0.98 mmol/g) and a solution of (1 -methyl- lH-indazol-4- yl)methanamine in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates. The reaction mixture was shaken at 60 0 C using a rotating oven [Robbins Scientific] for 12 hours. The resin was washed with DMF, MeOH, and then DCM
  • Step 2 A solution of commercial available Fmoc-Tyr(OtBu)-OH (4 equiv.), PyBob (4 equiv.), HOAt (4 equiv.), and DIEA (12 equiv.) in DMF was added to the resin. After the reaction mixture was shaken for 12 hours at room temperature, the resin was washed with DMF, MeOH, and then DCM.
  • Step 3 To the resin swollen by DMF before reaction was added 25% piperidine in DMF and the reaction mixture was shaken for 30 min at room temperature. This deprotection step was repeated again and the resin was washed with DMF, Methanol, and then DCM. A solution of hydrazine acid (4 equiv.), HOBt (4 equiv.), and DIC (4 equiv.) in DMF was added to the resin and the reaction mixture was shaken for 12 hours at room temperature. The resin was washed with DMF, MeOH, and then DCM.
  • the resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
  • a bromoacetal resin (37mg, 0.98 mmol/g) and a solution of tert-butyl 7- (aminomethyl)-3-(cyclopropanecarbonyl)-lH-indazole-l-carboxylate in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates.
  • the reaction mixture was shaken at 60 0 C using a rotating oven [Robbins Scientific] for 12 hours.
  • the resin was washed with DMF, MeOH, and then DCM
  • the resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
  • a bromoacetal resin (37mg, 0.98 mmol/g) and a solution of 2-(7-(aminomethyl)-lH- indazol-l-yl)ethyl tert-butyl carbonate in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates.
  • the reaction mixture was shaken at 60 0 C using a rotating oven [Robbins Scientific] for 12 hours.
  • the resin was washed with DMF, MeOH, and then DCM
  • Step 4 The resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
  • Compound C Assay was conducted in a 200 ⁇ L volume in 96-well microtiter plates using cDNA- expressed human hepatic CYP3A4 (supersome, BD GentestTM #456202). 7-Benzyloxy-4- trifluoromethyl-coumarin (BFC) was used as a substrate for CYP3A4. Test articles and substrate BFC were dissolved in 100% acetonitrile. The final volume of acetonitrile in the incubation mixture was less than 1% (volume/volume).
  • Potassium phosphate buffer pH 7.4, final concentration 0.1M
  • MgCl 2 final concentration 8.3mM
  • EDTA final concentration 1.67mM
  • a test article stock solution a test article stock solution
  • a CYP3A4 supersome final concentration 0.25 mM
  • Compound D SW480 cells were transfected with the usage of SuperfectTM transfect reagent (Qiagen, 301307). Cells were trypsinized briefly 1 day before transfection and plated on 6 well plate (5 x 10 5 cells/well) so that they were 50-80% confluent on the day of transfection.
  • the DNA-SuperfectTM transfect reagent complexes were applied to the cells before incubating at 37 °C at 5 % CO 2 for 3 hours. After incubation, recovery medium with 10 % FBS was added to bring the final volume to 1.18 ml. After 3 hours incubation, the cells were harvested and reseeded to 96 well plate (3 x 10 4 cells/well). After overnight incubation at 37 °C at 5 % CO 2 , the cells were treated with Compound D for 24 hours. Finally, the activity was checked by means of luciferase assay (Promega, E 1960). Figure 3 illustrates the results of the measurement of IC 50 of Compound D for SW480 cells. IC50 was 0.083 ⁇ 0.007 ⁇ M.
  • MV-4-1 1 human, Acute Myeloid Leukemia cell line
  • MV-4-1 1 human, Acute Myeloid Leukemia cell line
  • IMDM Iscove's modified Dulbecco's medium
  • FBS fetal bovine serum
  • Ix penicillin/streptomycin 10,000 units/ml Penicillin, 10,000 g/ml Streptomycin in 0.85% NaCl
  • MV-4-11 cells were harvested with IMDM medium and 5 x 10 4 cells / well were transferred to each well of 96 well culture plates (Nunc, #167008).
  • the test compounds were treated with the serial dilution and duplicated for each concentration.
  • test compounds were repeatedly diluted with the same volume of media onto 96-well assay block (costar, #3956). After the dilution, each compound was added to each well. The background absorbance was also measured during the test compounds treatment by adding the IMDM media in replacement of test compound to the negative control plate. The plates were incubated for 3 days (72 hours) at 37 0 C in the humidified incubator containing 5% CO 2 . On the last day, 20 ⁇ L of CellTiter 96 Aqueous One Solution (Promega #G3581) was added to the culture in each well and the plates were incubated for a few hours at 37 0 C in the humidified incubator containing 5% CO 2 . After the incubation, the absorbance of each cell was measured at 490 nm using an EnVision
  • GI50 values were calculated using a Prism 3.0 program. The results showed that the test compounds affected the cell proliferation and inhibited the growth of AML cancer cells.
  • Figure 4 shows the result of the inhibition of Compound A. GI50 of Compound A and Compound C were 0.220 ⁇ M and 0.037 ⁇ M, respectively.
  • the present invention provides new compounds of revers-tum mimetics, which can be used as pharmaceutical compounds, especially on AML cancer cells.
  • the invention has been described in detail with reference to preferred embodiments thereof. However, it will be appreciated by those skilled in the art that changes may be made in these embodiments without departing from the principles and spirit of the invention, the scope of which is defined in the appended claims and their equivalents.

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Abstract

Conformationally constrained compounds that are novel and mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins and having bicyclic framework are disclosed, as well as derivatives thereof including prodrugs. Such reverse-turn mimetic structures and prodrugs have utility over a wide range of fields, including use as diagnostic and therapeutic agents. The invention also relates to a use of such compounds for the preparation of a medicament for treating or preventing cancer including an acute myeloid leukemia.

Description

Description NOVEL COMPOUNDS OF REVERSE TURN MIMETICS AND THE
USE THEREOF (l) Technical Field The present invention relates generally to novel compounds of reverse-turn mimetics and their application in the treatment of medical conditions, e.g., cancer diseases, and pharmaceutical compositions comprising the mimetics.
Background Art Random screening of molecules for possible activity as therapeutic agents has occurred for many years and resulted in a number of important drug discoveries. While advances in molecular biology and computational chemistry have led to increased interest in what has been termed "rational drug design," such techniques have not proven as fast or reliable as initially predicted. Thus, in recent years there has been a renewed interest and return to random drug screening. To this end, particular strides having been made in new technologies based on the development of combinatorial chemistry libraries, and the screening of such libraries in search for biologically active members.
Initially, combinatorial chemistry libraries were generally limited to members of peptide or nucleotide origin. While combinatorial libraries containing members of peptide and nucleotide origin are of significant value, there is still a need in the art for libraries containing members of different origin. For example, traditional peptide libraries to a large extent merely vary the amino acid sequence to generate library members. While it is well recognized that the secondary structures of peptides are important to biological activity, such peptide libraries do not impart a constrained secondary structure to its library members.
To this end, some researchers have cyclized peptides with disulfide bridges in an attempt to provide a more constrained secondary structure (Tumelty et al., J. Chem. Soc. 1067-68, 1994; Eichler et al., Peptide Res. 7:300-306, 1994). However, such cyclized peptides are generally still quite flexible and are poorly bioavailable, and thus have met with only limited success.
More recently, non-peptide compounds have been developed which more closely mimic the secondary structure of reverse-turns found in biologically active proteins or peptides. For example, U.S. Pat. No. 5,440,013 to Kahn and published PCT Applications Nos. WO94/03494, WO01/00210A1, and WO01/16135A2 to Kahn each disclose conformationally constrained, non-peptidic compounds, which mimic the three- dimensional structure of reverse-turns. In addition, U.S. Pat. No. 5,929,237 and its continuation-in-part U.S. Pat. No. 6,013,458, both to Kahn, disclose conformationally constrained compounds which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins. The synthesis and identification of conformationally constrained, reverse-turn mimetics and their application to diseases were well reviewed by Obrecht (Advances in Med. Chem., 4, 1-68, 1999).
While significant advances have been made in the synthesis and identification of conformationally constrained, reverse-turn mimetics, there remains a need in the art for small molecules which mimic the secondary structure of peptides. There is also a need in the art for libraries containing such members, as well as techniques for synthesizing and screening the library members against targets of interest, particularly biological targets, to identify bioactive library members. In the mean time, a proto-oncogene is a normal gene that can become an oncogene due to mutations or increased expression. c-Myc (MYC) is known as one of the proto- oncogenes, and dysregulation of c-Myc is considered one of a series of oncogenic events required for mammalian tumorigenesis (Pelengaris S, Khan M. The many faces of c-MYC. Arch Biochem Biophys. 2003; 416:129-136). MYC dysregulation, via a variety of mechanisms, was also found to be associated with myeloid leukemias (Hoffman B, Amanullah A, Shafarenko M, Liebermann DA. The proto-oncogene c-Myc in hematopoietic development and leukemogenesis. Oncogene. 2002; 21 : 3414-3421). In addition, c-Myc was found to rapidly induce acute myeloid leukemia (Hui Luo et al. "c- Myc rapidly induces acute myeloid leukemia in mice without evidence of lymphoma- associated antiapoptotic mutations," Blood, 1 October 2005, volume 106, Number 7, pp 2452-2461).
As c-Myc can be upregulated in acute myeloid leukemia, the oncogenic function of c-Myc has been studied and its exact role in myeloid leukemogenesis has been studied. Recently, some scientist found that Myc preferentially stimulated the growth of myeloid progenitor cells in methylcellulose and snowed that Myc is a critical downstream effector of myeloid leukemogenesis (ibid.).
The finding that c-Myc plays a critical role in myeloid leukemogenesis indicates that by inhibiting an activation of c-Myc protein, an acute myeloid leukemia can be cured or prevented.
On the other hand, enzymes of the cytochrome P450 (CYP) superfamily are the major determinants of half-life and execute pharmacological effects of many therapeutic drugs. The human cytochrome P450 (CYP) 3 A subfamily, includes CYP3A4, which is most abundant in the human liver (~ 40%) and metabolizes more than 50% of clinically used drugs (Shimada et al 1994; Rendic and Di Carlo 1997).
Due to the key role of CYP3A4 in drug metabolism, significant inactivation of this enzyme could result in marked pharmacokinetic drug-drug interactions. Inhibition of CYP3A4 may cause severe drug toxicity through the enhanced exposure to coadministered drugs (Dresser et al 2000). For example, when irreversible CYP3A4 inhibitors such as erythromycin or clarithromycin are coadministered with terfenadine, astemizole, or pimozide patients may experience Torsades de pointes (a life-threatening ventricular arrhythmia associated with QT prolongation) (Spinier et al 1995; Dresser et al 2000). Cancer patients, at times, undergo multiple treatment regimes, which increases the risk of drug-drug interactions followed by adverse drug reactions.
Therefore, in developing therapeutic agents, especially when it is to be administered in combination with other drugs, there is a need for providing compounds having less
CYP3A4 inhibitory activity.
Disclosure of Invention
Technical Problem
The object of the present invention is to provide novel compounds which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins and have biological activity such as anti-cancer effect.
Another object of the present invention is to provide novel compounds which inhibit
Wnt signaling.
Yet another object of the present invention is to provide novel compounds which can be used as pharmaceuticals, in particular having less CYP3A4 inhibitory activity (higher IC50).
Yet another object of the present invention is to provide novel compounds for a treatment or a prevention of acute myeloid leukemia through downregulation of expression of c-Myc.
Technical Solution
The present invention is directed to a new type of conformationally constrained compounds and derivatives including prodrugs thereof, which mimic the secondary structure of reverse-turn regions of biologically active peptides and proteins. This invention also discloses libraries containing such compounds, as well as the synthesis and screening thereof. The compounds of the present invention have the following general Formula (I):
wherein E is -ZR3- or
Figure imgf000005_0001
-(C=O)NH-, -(C=O)O-, -(C=O)S-, -S(O)2- or a bond; and each of Ri, R2, R3, R4 and R5 is the same or different and independently an amino acid side chain moiety or an amino acid side chain derivative. The reverse turn mimetic compound may be present as an isolated stereoisomer or a mixture of stereoisomers or as a pharmaceutically acceptable salt thereof.
In certain embodiments, Ri of compounds of Formula (I) is indazolyl or substituted indazolyl.
Specific examples of Ri, R2, R3, R4 and R5 are provided in the following detailed description.
In an embodiment wherein E is CHR3, the compounds of this invention have the following Formula (II):
Figure imgf000005_0002
° "> ( II) wherein W is as defined above, and Ri, R2, R3, R4 and R5 are as defined in the following detailed description.
In certain embodiments, the compounds of this invention have the following general Formula (III):
Figure imgf000006_0001
wherein Rj, R4, R6 Xi, X2, and X3are defined in the following detailed description.
The present invention is also related to prodrugs using the libraries containing one or more compounds of Formula (I). A prodrug is typically designed to release the active drug in the body during or after absorption by enzymatic and/or chemical hydrolysis. The prodrug approach is an effective means of improving the oral bioavailability or i.v. administration of poorly water-soluble drugs by chemical derivatization to more water- soluble compounds. The most commonly used prodrug approach for increasing aqueous solubility of drugs containing a hydroxyl group is to produce esters containing an ionizable group; e.g., phosphate group, carboxylate group, alkylamino group (Fleisher et ah, Advanced
Figure imgf000006_0002
wherein (III) is Formula (III) as described above; one of Rj, R4, R6, Xi, X2, and X3 is linked to R7 via Y; Y is an oxygen, sulfur, or nitrogen in Ri, R4, or R6, or an oxygen in Xi, X2, or X3; and R7 is hydroxyalkyl, glycosyl, phosphoryloxymethyloxycarbonyl, substituted or unsubstituted piperidine carbonyloxy, or a salt thereof; or Y-R7 is an amino acid residue, a combination of amino acid residues, phosphate, hemimalate, hemisuccinate, dimethylaminoalkylcarbamate, dimethylaminoacetate, or a salt thereof; and when not linked to R7: Ri, R4, R6, Xi, X2, and X3 are defined in the following detailed description.
In certain embodiments, the prodrugs of the present invention are capable of serving as a substrate for a phosphatase, a carboxylase, or other enzymes and are thereby converted to compounds having general Formula (III). The present invention is also directed to libraries containing one or more compounds of Formula (I) above, as well as methods for synthesizing such libraries and methods for screening the same to identify biologically active compounds. In a related aspect, the present invention further provides novel compounds which have less CYP3A4 inhibitory activity. The present invention also provides novel compounds which have inhibition activity against Wnt signaling. The present invention also provides novel compounds which can be used for the preparation of a medicament for a treatment or a prevention of acute myeloid leukemia. Advantageous Effects
The present invention provides novel compounds of reverse-turn mimetics. The compounds of the present invention exhibit less CYP3A4 inhibitory activity (higher IC50) which allows the compounds as potential pharmaceuticals, especially when it is to be administered in combination with other drugs. The compounds of the present invention showed strong inhibition activity against Wnt signaling. The compounds inhibited the growth of AML cancer cells and it can be used in the treatment or prevention of an acute myeloid leukemia. Brief Description of the Drawing
Reference will now be made in detail to the preferred embodiment of the present invention, examples of which are illustrated in the drawings attached herein. The embodiments are described below so as to explain the present invention by referring to the figures. Figure 1 provides a general synthetic scheme for preparing revers-turn mimetics of the present invention.
Figure 2 shows an effect of test compounds (Compounds A, B, and C) on the CYP3A4 activity. The graph is based on the measurement of IC50 for the Compounds of the present invention of CYP3A4 inhibition assay, wherein inhibition of activity of CYP3A4 was measured at various concentrations of the compound to obtain the ICs0 value. Detailed procedures are disclosed in Example 1.
Figure 3 shows the results of the measurement Of IC50 of Compound D for SW480 cells on TopFlash Reporter Gene Bioassay.
Figure 4 shows inhibition of growth of AML cancer cells by the test compounds according to the concentration of the test compounds (Compounds A and C).
Best Mode for Carrying Out the Invention
As used in the specification and appended claims, unless specified to the contrary, the following terms have the meaning indicated: "Amino" refers to the -NH2 radical.
"Amidino" refers to the -C(=NH)-NH2 radical. One or both hydrogens of the amine group of the amidino may be replaced with one or two alkyl groups, as defined herein. The alkyl-derivatized amidino radicals are also referred to as "alkylamidino" and "dialkylamidino," respectively. "Cyano" refers to the -CN radical.
"Carboxy" refers to the -COOR radical, wherein R is hydrogen or alkyl, as defined herein.
"Acyl" refers to the -COR radical, wherein R is alkyl, aryl, cycloalkyl, heterocyclyl, as defined herein. For example, R can be methyl, butenyl, cyclopropyl, and the like. The alkyl or aryl can be optionally substituted with the substituents as described for an alkyl or an aryl group, respectively. Exemplary acyl groups include, without limitation, phenylacyl, benzylacyl, Ci^acyl (e.g., acetyl) and the like.
"Alkylsulfonate" refers to -S(O)2-OR radical, wherein R is alkyl, as defined herein. "Amidosulfonate" refers to the radical -OS(O)2-NR2, each R is independently hydrogen or alkyl. Exemplary amidosulfonates include -OS(O)2NH2, -OS(O)2NHMe.
"Aminocarbonyl" refers to the radical -C(O)NR2, each R is independently hydrogen, alkyl, amino, cycloalkylalkyl, heterocyclyl, alkoxyalkyl, hydroxyalkyl, hydroxyl, alkoxy, arylalkyl, heterocyclylalkyl, or two Rs together with the nitrogen atom to which they are attached form a heterocyclyl, as defined herein. When one of the R is hydrogen, the other R is Cl-4alkyl, aminocarbonyl can be represented by "CMalkylformamidyl"
'W-formamidyl" refers to the radical -NHC(O)H.
"Phenyl sulfonyl" refers to the -S(O)2-R radical, wherein R is phenyl, the phenyl can be further substituted with alkyl or chloro.
"Phenylsulfonate" refers to the -0-S(O)2-R radical, wherein R is phenyl, the phenyl can be further substituted with alkyl or chloro.
"Alkylsulfonyl" refers to the -S(O)2-R radical, wherein R is alkyl, as defined herein. Exemplary alkylsulfonyl radicals include methylsulfonyl. "Alkylthio" refers to the -SR radical wherein R is alkyl, as defined herein.
"Arylthio" refers to the -SR radical wherein R is aryl, as defined herein. The aryl group of the arylthio can be further substituted with alkyl or chloro.
"Aryloxy" refers to the -OR radical wherein R is aryl, as defined herein. The aryl group can be further substituted with alkyl, alkόxy and the like. "Acyloxyalkyl" refers to the -R'-OC(O)-R radical, wherein R is alkyl, aryl, cycloalkyl, heterocyclyl, as defined herein; and R' is an alkyl.
"Guanidino" refers to the -NH-C(=NH)-NH2 radical. One or both hydrogens of the amine group of the guanidino may be replaced with one or two alkyl groups, as defined herein. The alkyl-derivatized guanidine radicals are also referred to as "alkylguanidino" and "dialkyl guanidino," respectively.
"Nitro" refers to the -NO2 radical.
"Alkyl" refers to a straight or branched hydrocarbon chain radical consisting solely of carbon and hydrogen atoms. An alkyl may be saturated (containing carbons linked together by single bonds only) or unsaturated (containing carbons linked together by at least one double bond or triple bond.) An alkyl having one to twelve carbon atoms is also referred to as "lower chain alkyl moieties" and can be presented by "Ci.i2alkyl." In other embodiments, an alkyl may comprise one to four carbon atoms and be represented by "Ci. 4alkyl." In other embodiments, an alkyl may comprise two to five carbon atoms and be represented by "C2-5alkyl." An alkyl is attached to the rest of the molecule by a single bond. Examples of saturated alkyls include, without limitation, methyl, ethyl, n-propyl,
1-methylethyl (/so-propyl), n-butyl, n-pentyl, 1 , 1 -dimethylethyl (/-butyl), 3-methylhexyl, 2-methylhexyl, and the like. Examples of unsaturated alkyls include, without limitation, ethenyl (i.e., vinyl), prop-1-enyl (i.e., allyl), but-1-enyl, pent-1-enyl, penta-l,4-dienyl, ethynyl (i.e., acytylenyl), prop-1-ynyl and the like. An alkyl may also be a monocyclic or bicyclic hydrocarbon ring radical, which may include fused or bridged ring systems. A cyclic alkyl is also referred to as "cycloalkyl." In certain embodiments, a cycloalkyl may comprise three to six carbon atoms and be represented by "C3-6cycloalkyl." Examples of monocyclic cycloalkyl radicals include, e.g., cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. An unsaturated cycloalkyl contains an endo double bond (i.e., a double bond in the ring). Examples of an unsaturated cycloalkyl include cyclohexenyl. Examples of bicyclic cycloalkyl radicals include, for example, norbornyl (i.e., bicyclo[2.2.1]heptyl), 7,7-dimethyl-bicyclo[2.2.1]heptyl, and the like.
Unless stated otherwise specifically in the specification, the term "alkyl" is meant to include both alkyl and "substituted alkyl," which refers to an alkyl radical in which one or more hydrogen atoms are replaced by one or more substituents independently selected from: acyl, amidino, alkylamidino, dialkylamidino, alkoxy, aryl, cyano, cycloalkyl, guanidino, alkylguanidino, dialkylguanidino, halo, heterocyclyl, hydrazinyl, hydroxyl, nitro, -OC(O)-R", -N(R1 ')2, -C(O)OR11, -C(O)N(R1 ')2, -N(RU)C(O)OR", -N(R")C(O)R", - N(R")S(O)tR" (where t is 1 or 2) -S(O)1OR11 (where t is 1 or 2), -S(O)pRπ (where p is 0, 1 or 2), and -S(O)tN(Rπ)2 (where t is 1 or 2) where each R11 is independently hydrogen, alkyl, aryl, arylalkyl, heterocyclyl or heterocyclylalkyl, as defined herein. "Alkoxy" refers to a radical represented by the formula alkyl-O-, wherein alkyl is as defined herein. The alkyl portion can be further substituted by one or more halogen. An alkoxy may also be represented by the number of the carbons in the alkyl group, for example, Ci-6alkoxy or Ci.3alkoxy.
"Aryl" refers to a radical derived from an aromatic monocyclic or bicyclic ring system by removing a hydrogen atom from a ring carbon atom. The aromatic monocyclic or bicyclic hydrocarbon ring system comprises six to twelve carbon atoms (i.e., C6-i2aryl), wherein at least one of the rings in the ring system is fully unsaturated, i.e., it contains a cyclic, delocalized (4n+2) π-electron system in accordance with the Huckel theory. Optionally, one or two ring atoms of the aryl may be heteroatoms selected from nitrogen, oxygen or sulfur. Examples of aryl radicals include, but are not limited to, phenyl and naphthyl. Unless stated otherwise specifically in the specification, the term "aryl" is meant to include both aryl and "substituted aryl," which refers to an aryl radical in which one or more hydrogen atoms are replaced by one or more substituents independently selected from: alkyl, acyl, amidino, amidosulfonate, alkoxy, aryloxy, cyano, guanidino, alkylguanidino, dialkylguanidino, halo, hydrazinyl, hydroxyl, nitro, heterocyclyl, -OC(O)-R1 ', -N(R1 ')2,
-C(O)OR11, -C(O)N(R1 1J2, -N(R11JC(O)OR11, -N(R11JC(O)R11, -N(R1^S(O)1R11 (where t is 1 or 2), -S(O)1OR1 1 (where t is 1 or 2), -S(OJpR11 (where p is O, 1 or 2), and -S(O)1N(R11J2 (where t is 1 or 2) where each R1 1 is independently hydrogen, alkyl, aryl, arylalkyl, heterocyclyl or heterocyclylalkyl. "Arylalkyl" refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more aryl groups, as defined herein. In various embodiments, arylalkyls include from 7 to 15 carbons and can be represented by C7-i5arylalkyl. In certain embodiments, arylalkyl is
Figure imgf000009_0001
is substituted with one aryl or two aryl groups, the latter being also referred to as "diarylalkyl" or "bisarylalkyl." Examples of arylCi^alkyl include, but are not limited to arylmethyl, arylethyl, arylpropyl, arylbutyl, bisarylmethyl, bisarylethyl, bisarylpropyl, bisarylbutyl. Exemplary arylalkyl radicals include, without limitation, benzyl, naphthylmethyl, diphenylmethyl, 3,3- bisphenylpropyl and the like. Unless stated otherwise specifically in the specification, the term "arylalkyl" is meant to include both arylalkyl and "substituted arylalkyl," wherein the alkyl part and/or the aryl part of the arylalkyl radical may be substituted as described herein for the alkyl radical and aryl radical, respectively.
"Cycloalkylalkyl" refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more c groups, as defined herein. In certain embodiments, cycloalkylalkyl is cycloalkylCi-2alkyl such as cycloalkylmethyl, cycloalkyl ethyl and the like. Exemplary cycloalkylalkyl radicals include, without limitation, cyclohexylalkyl (e.g., cyclohexylmethyl and cyclohexyl ethyl), and cyclopentylalkyl (e.g., cyclopentylmethyl and cyclopentylethyl) and the like. Unless stated otherwise specifically in the specification, the term "cycloalkylalkyl" is meant to include both cycloalkylalkyl and "substituted cycloalkylalkyl," wherein the alkyl part and/or the cycloalkyl part of the cycloalkylalkyl radical may be substituted as described herein for the alkyl radical and cycloalkyl radical, respectively.
"Glycosyl" refers to a radical by removing the hemiacetal hydroxyl group from a cyclic form of a monosaccharide (e.g., glucose), disaccharide, oligosaccharide (compring three to ten monosaccharides), or polysaccharide (comprising more than ten monosaccharides) .
"Halo" or "halogen" refers to fluoro, chloro, bromo or iodo radicals. "Haloalkyl" refers to an alkyl radical, as defined herein, which is substituted by one or more halo radicals, as defined herein. Exemplary haloalkyls include, without limitation: trifluoromethyl, difluoromethyl, trichloromethyl, 2,2,2-trifluoroethyl, l-fluoromethyl-2-fluoroethyl, 3-bromo-2-fluoropropyl, l-bromomethyl-2-bromoethyl, and the like. An alkyl substituted with one or more fluoro is also referred to as "perfluoroalkyl," for example,
Figure imgf000010_0001
The alkyl part of the haloalkyl radical may be optionally substituted as defined herein for an alkyl group.
"Heterocyclyl" refers to a stable heterocyclic ring radical that comprises two to eleven carbon atoms and from one to three heteroatoms selected from nitrogen, oxygen and sulfur. In certain embodiments, the heterocyclyl contains one or two heteroatoms. Unless stated otherwise specifically in the specification, the heterocyclyl radical may be a monocyclic or bicyclic ring system, which may include fused or bridged ring systems. In certain embodiments, the heterocyclyl may be a 5-, 6- or 7-membered monocyclic ring. In other embodiments, the heterocyclyl may be an 8-, 9-, 10-, 11- or 12-membered fused bicyclic ring. The heteroatoms in the heterocyclyl radical may be optionally oxidized. One or more nitrogen atoms, if present, may be optionally quaternized. The heterocyclyl radical may be non-aromatic or aromatic (i.e., at least one ring in the heterocyclyl radical has a delocalized (4n+2) π-electron system in accordance with the Huckel theory.) The heterocyclyl may be attached to the rest of the molecule through any atom of the ring(s). Examples of non-aromatic heterocyclyl radicals include, but are not limited to, dioxolanyl, decahydroisoquinolyl, imidazolinyl, imidazolidinyl, isothiazolidinyl, isoxazolidinyl, morpholinyl, octahydroindolyl, octahydroisoindolyl, 2-oxopiperazinyl, 2-oxopiperidinyl, 2-oxopyrrolidinyl, oxazolidinyl, piperidinyl (also referred to as "piperidyl"), piperazinyl, 4-piperidonyl, 3-pyrrolinyl, pyrrolidinyl, pyrazolidinyl, quinuclidinyl, thiazolidinyl, tetrahydrofuryl, trithianyl, tetrahydropyranyl, thiomorpholinyl, and thiamorpholinyl. Examples of aromatic heterocyclyl radicals include, but are not limited to, azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodioxolyl, benzofuranyl, benzooxazolyl, benzoisoxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[Z?][l,4]dioxepinyl, benzo[b][l,4]oxazinyl, 1 ,4-benzodioxanyl, benzoxazolyl, benzodioxolyl, benzodioxinyl, benzopyranyl, benzopyrazolyl, benzofuranyl, benzofuranonyl, benzothienyl (benzothiophenyl), benzothieno[3,2-d]pyrimidinyl, benzotriazolyl, carbazolyl, chromone, cinnolinyl, cyclopenta[d]pyrimidinyl, dibenzofuranyl, dibenzothiophenyl, furanyl, furanonyl, furo[3,2-c]pyridinyl, isothiazolyl, imidazolyl, indazolyl, indolyl, indazolyl, isoindolyl, indolinyl, isoindolinyl, isoquinolyl, indolizinyl, isoxazolyl, 5,8-methano-5,6,7,8-tetrahydroquinazolinyl, naphthyridinyl, 1 ,6-naphthyridinonyl, oxadiazolyl, 2-oxoazepinyl, oxazolyl, oxiranyl, 5,6,6a,7,8,9, 10, 1 Oa-octahydrobenzo[h]quinazolinyl, phenazinyl, phenothiazinyl, phenoxazinyl, phthalazinyl, pteridinyl, purinyl, pyrrolyl, pyrazolyl, pyrazolo[3,4-d]pyrimidinyl, pyridinyl (also referred to as pyridyl), pyrido[3,2-d]pyrimidinyl, pyrido[3,4-d]pyrimidinyl, pyrazinyl, pyrimidinyl, pyridazinyl, pyrrolyl, quinazolinyl, quinoxalinyl, quinolinyl, isoquinolinyl, tetrahydroquinolinyl, 1,2,3,4-tetrahydrocarbazolyl, 5,6,7,8-tetrahydroquinazolinyl, thiazolyl, thiadiazolyl, triazolyl, tetrazolyl, triazin-2-yl, thieno[2,3-d]pyrimidinyl, thieno[3,2-d]pyrimidinyl, thieno[2,3-c]pridinyl, and thiophenyl (i.e. thienyl). Unless stated otherwise specifically in the specification, the term "heterocyclyl" is meant to include both heterocyclyl and "substituted heterocyclyl," which refers to a heterocyclyl radical substituted by one or more substituents selected from alkyl, acyl, oxo (e.g., pyridinonyl, pyrrolidonyl), aryl, arylalkyl, acyloxyalkyl, amidino, alkoxy, cyano, guanidino, alkylguanidino, dialkylguanidino, halo, hydrazinyl, hydroxyl, nitro, -OC(O)-R' 1, -N(Rπ)2, -C(O)OR11, -C(O)N(R1 % -N(RΠ)C(O)OR", -N(R11JC(O)R11, - N(R11JS(O)1R1 ' (where t is 1 or 2), -S(O)1OR1 ' (where t is 1 or 2), -S(O)PR' ' (where p is O, 1 or 2), and -S(O)tN(R' ')2 (where t is 1 or 2) where each R1 ' is independently hydrogen, alkyl, aryl, arylalkyl, heterocyclyl or heterocyclylalkyl.
"Heterocyclylalkyl" refers to an alkyl radical wherein one or more hydrogens of the alkyl are replaced with one or more heterocyclyl groups, as defined herein. If the heterocyclyl is a nitrogen-containing heterocyclyl, the heterocyclyl may be attached to the alkyl radical at the nitrogen atom. In certain embodiments, the alkyl part of the heterocyclylalkyl contains 1-4 carbon atoms and can be represented by
Figure imgf000011_0001
Examples of heterocyclylalkyl radicals include, without limitation, morpholinylalkyl such as morpholinylmethyl, piperidylalkyl such as piperidylmethyl, imidazolidinylalkyl such as imidazolidinylmethyl and the like. Additional examples of heterocyclylalkyl radicals, wherein the heterocyclyl part is aromatic, include, but are not limited to: pyridylmethyl, pyridylethyl, pyridylpropyl, pyridylbutyl, quinolinylmethyl, quinolinylethyl, quinolinylpropyl, quinolinylbutyl, indazolylmethyl, indazolylethyl, indazolylpropyl, indazolylbutyl, benzpyrazolylmethyl, benzpyrazolylethyl, benzpyrazolylpropyl, benzpyrazolylbutyl, isoquinolinylmethyl, isoquinolinyl ethyl, isoquinolinylpropyl, isoquinolinylbutyl, benzotriazolylmethyl, benzotriazolylethyl, benzotriazolylpropyl, benzotriazolylbutyl and the like. Unless stated otherwise specifically in the specification, the term "heterocyclylalkyl" is meant to include both heterocyclylalkyl and "substituted heterocyclylalkyl," wherein the alkyl part and/or the heterocyclyl part of the heterocyclylalkyl radical may be substituted as described herein for the alkyl radical and the heterocyclyl radical, respectively.
The compounds, or their pharmaceutically acceptable salts may contain one or more asymmetric centers and may thus give rise to enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)- or (S)- or, as (D)- or (L)- for amino acids. When the compounds described herein contain olefinic double bonds or other centers of geometric asymmetry, and unless specified otherwise, it is intended that the compounds include both E and Z geometric isomers (e.g., cis or trans.) Likewise, all possible isomers, as well as their racemic and optically pure forms, and all tautomeric forms are also intended to be included. As used herein, "amino acid" is meant to include naturally occurring α-amino acids and/or unnatural amino acids, such as β-amino acids and homoamino acids. Examples of the amino acids include, but are not limited to: alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, valine, phosphoserine, phosphothreonine, phosphotyrosine, 4-hydroxyproline, hydroxyl ysine, demosine, isodemosine, gamma-carboxyglutamate, hippuric acid, octahydroindole-2-carboxylic acid, statine, l,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, penicillamine, ornithine, 3- methylhistidine, norvaline, beta-alanine, gamma-aminobutylic acid, cirtulline, homocysteine, homoserine, methyl-alanine, para-benzoylphenylalanine, phenylglycine, propargylglycine, sarcosine, methionine sulfone, tert-butyl glycine, 3,5-dibromotyrosine and 3,5-diiodotyrosine.
"Amino acid residue" or "amino acid side chain moiety" refers to the portion of an amino acid that remains after losing a water molecule (or alcohol) when the amino acid is condensed with a molecule. Typically, an amino acid is condensed with a molecule, including a compound of any of Formulae (I)-(IV), by forming a peptide bond. In certain embodiments, the amino functional group of the amino acid can be condensed with a carboxylic acid group or its reactive equivalent (e.g., carboxylic anhydride) of the molecule. In other embodiments, the carboxylic acid functional group of the amino acid can be condensed with an amine group of the molecule. Typically, a molecule of water is lost during the formation of the peptide bond. Examples of the "amino acid residues" or "amino acid side chain moiety" include, but are not limited to, residues of alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glutamic acid, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, valine, phosphoserine, phosphothreonine, phosphotyrosine, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, gamma-carboxyglutamate, hippuric acid, octahydroindole-2- carboxylic acid, statine, l,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, penicillamine, ornithine, 3-methylhistidine, norvaline, beta-alanine, gamma-aminobutylic acid, cirtulline, homocysteine, homoserine, methyl-alanine, para-benzoylphenylalanine, phenylglycine, propargylglycine, sarcosine, methionine sulfone, tert-butylglycine, 3,5-dibromotyrosine, 3,5- diiodotyrosine, glycosylated threonine, glycosylated serine, and glycosylated asparagine.
An "amino acid side chain derivative" refers to a derivative of any of the amino acid side chain moiety as described in Table 1. In certain embodiments, the amino acid side chain derivative is alkyl, acyl, alkoxy, aryl, arylalkyl, heterocyclyl, or heterocyclylalkyl, as defined herein.
[TABLE 1]
Amino Acid Side Chain Moietv Amino Acid
-H Glycine
-CH3 Alanine
-CH(CHj)2 Valine
-CH2 CH(CHj)2 Leucine
-CH(CH3)CH2 CH3 Isoleucine
- (CH2)4NH3 + Lysine
- (CH2)3NHC(NH2)NH2 + Arginine
Figure imgf000012_0001
Histidine
-CH2COO" Aspartic acid
-CH2CH2COO" Glutamic acid
-CH2CONH2 Asparagine
-CH2CH2CONH2 Glutamine
Phenylalanine
Figure imgf000012_0002
Tyrosine
Figure imgf000013_0001
Tryptophan
-CH2SH Cysteine -CH2CH2SCH3 Methionine -CH2OH Serine -CH(OH)CH3 Threonine
Proline
Figure imgf000013_0002
Hydroxyproline
A "stereoisomer" refers to a compound made up of the same atoms bonded by the same bonds but having different three-dimensional structures, which are not interchangeable. It is therefore contemplated that various stereoisomers and mixtures thereof and includes "enantiomers," which refers to two stereoisomers whose molecules are nonsuperimposeable mirror images of one another. A "tautomer" refers to a proton shift from one atom of a molecule to another atom of the same molecule.
"Prodrugs" is meant to indicate a compound that may be converted under physiological conditions or by solvolysis to a biologically active compound described herein. Thus, the term "prodrug" refers to a precursor of a biologically active compound that is pharmaceutically acceptable. A prodrug may be inactive when administered to a subject, but is converted in vivo to an active compound, for example, by hydrolysis. The prodrug compound often offers advantages of solubility, tissue compatibility or delayed release in a mammalian organism (see, Bundgard, H., Design of Prodrugs (1985), pp. 7-9, 21-24 (Elsevier, Amsterdam). A discussion of prodrugs is provided in Higuchi, T., et al, "Pro-drugs as Novel
Delivery Systems," A.C.S. Symposium Series, Vol. 14, and in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987, both of which are incorporated in full by reference herein.
The term "prodrug" is also meant to include any covalently bonded carriers, which release the active compound in vivo when such prodrug is administered to a mammalian subject. Prodrugs of an active compound, as described herein, may be prepared by modifying functional groups present in the active compound in such a way that the modifications are cleaved, either in routine manipulation or in vivo, to the parent active compound. Prodrugs include compounds wherein a hydroxyl, amino or mercapto group is bonded to any group that, when the prodrug of the active compound is administered to a mammalian subject, cleaves to form a free hydroxyl, free amino or free mercapto group, respectively. Examples of the prodrugs include, but are not limited to, acetate, succinate, phosphate, hemisuccinate, malate, hemimalate, formate and benzoate derivatives of alcohol or amine functional groups in the active compounds and the like. Other examples of the prodrugs include, but are not limited to, amino acid derivatives of alcohol or amine functional groups in the active compounds and the like.
The present invention is directed to confoiτnationally constrained compounds that mimic the secondary structure of reverse-turn regions of biological peptide and proteins (also referred to herein as "reverse-turn mimetics," and is also directed to chemical libraries relating thereto.
The reverse-turn mimetic structures of the present invention are useful as bioactive agents, including (but not limited to) use as diagnostic, prophylactic and/or therapeutic agents. The reverse-turn mimetic structure libraries of this invention are useful in the identification of bioactive agents having such uses, hi the practice of the present invention, the libraries may contain from tens to hundreds to thousands (or greater) of individual reverse-turn structures (also referred to herein as "members"). hi one aspect of the present invention, a reverse-turn mimetic structure is disclosed having the following Formula (I):
Figure imgf000014_0001
wherein E is -ZR3- or -(C=O)-, wherein Z is CH or N; W is -(C=O)-, -(C=O)NH-, -(C=O)O-, -(C=O)S-, -S(O)2- or a bond; and each of Ri, R2, R3, R4 and R5 is the same or different and independently an amino acid side chain moiety or an amino acid side chain derivative. The reverse turn mimetic compound may be present as an isolated stereoisomer or a mixture of stereoisomers or as a pharmaceutically acceptable salt thereof.
In certain embodiments, Ri of compounds of Formula (I) is indazolyl or substituted indazolyl. hi certain embodiment of the compounds described in the preceding paragraph, Ri of compounds of Formula (I) may be indazolyl or substituted indazolyl having one or more substituents independently selected from Ci-7alkyl, C6-i2aryl, C7-i5arylalkyl, substituted C7. i5arylalkyl, cycloalkylalkyl, hydroxyalkyl, Cj.ioacyl, amino, halogen, nitro, C2~i0acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl, hydroxyalkyl, cyanoCioalkyl, morpholinylCi-3alkyl, alkoxyalkylamide and cycloalkylcarbonyl. In certain embodiments, R2, R4 and R5 of compounds of Formula (I) are independently selected from the group consisting of:
Ci.i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from: halogen, cyano,
Figure imgf000014_0002
guanidino,
Figure imgf000014_0004
amidino,
Figure imgf000014_0003
diCMalkyl amidino, Ci-salkylamino, diCi-5alkylamino, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, C i^alkyl amid
Figure imgf000014_0005
ino, diCi^alkylamidino, Ci-salkylamino, diCi.salkylamino, and hydroxyl; C62aryl or substituted C6.i2aryl having one or more substituents independently ino,
Figure imgf000015_0001
Cό-πheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6.i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci-6alkyl, Ci-6alkoxy, cyano, and hydroxyl; and
C7-i3arylalkyl or substituted C7-i3arylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000015_0002
Ci- 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci-6alkoxy, nitro, carboxy, cyano, sulfuryl, acetylenyl, and hydroxyl; and
R3 is selected from the group consisting of: hydrogen; Ci-12alkyl or substituted Ci.i2alkyl having one or more substituents independently selected from: halogen, cyano, Ct-6alkoxy, amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, Ci^alkylamidino, diCi-4alkylamidino, Ci-salkylamino, diCi.salkyl amino, and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, C i^alkyl amid
Figure imgf000015_0003
ino, diCi^alkylamidino, Ci-5alkylamino, diCi-5alkyl amino, and hydroxyl;
C6-i2aryl or substituted C6.i2aryl having one or more substituents independently selected from: halogen, amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, C Malkyl amidino,
Figure imgf000015_0004
C|-6alkoxy;
C6-i3heterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6-i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci-6alkyl, Ci-6alkoxy, cyano, and hydroxyl; and
C7-i3arylalkyl or substituted C7-i3arylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci. 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci-6alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl. In certain embodiments, R2, R4 and R5 of compounds of Formula (I) are independently selected from the group consisting of: aminoC2-5alkyl; guanidinoC2-5alkyl; Ci^alkylguanidinoC2-5alkyl, diCi_ 4alkylguanidino-C2-5alkyl; amidinoC2-5alkyl; C
Figure imgf000015_0005
i^alkylamidinoC^alkyl; diCi. 4alkylamidinoC2-5alkyl; Ci-3alkoxy; Ci.i2alkyl; C6-i2aryl; C6-,2arylalkyl; C2-i2alkenyl; phenyl or substituted phenyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino,
Figure imgf000015_0006
halogen, perfluoroCMalkyl,
Figure imgf000015_0007
C^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; naphthyl or substituted naphthyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Cmalkylamino,
Figure imgf000015_0008
halogen, perfluoroCMalkyl,
Figure imgf000015_0009
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl, and hydroxyl; benzyl or substituted benzyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000016_0001
halogen, perfluoro Ci.3alkoxy, nitro, carboxy, cyano, sulfuryl,
Figure imgf000016_0002
acetylenyl and hydroxyl; bisphenylmethyl or substituted bisphenylmethyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, CMalkylamino, Ci- 4dialkylamino, halogen, perfluoro C^alkyl, C|-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridyl or substituted pyridyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000016_0003
halogen, perfluoro
Figure imgf000016_0004
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridylCi-4alkyl, or substituted pyridylCi^alkyl having one or more substituents independently selected from:
Figure imgf000016_0005
amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci- 4dialkylamino, halogen, perfluoro
Figure imgf000016_0006
Ci.3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyrimidylCi-4alkyl, or substituted
Figure imgf000016_0007
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Q- 4alkylamino,
Figure imgf000016_0008
Ci-4alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; triazin-2-ylCi.4alkyl, or substituted triazin-2-ylCi-4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci. 4alkylamino, Ci^dialkylamino, halogen, perfluoro C^alkyl, Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; imidazolylCi-4alkyl or substituted imidazolylCi-4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-
4alkylamino,
Figure imgf000016_0009
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
N-amidinopiperazinyl-N-Co^alkyl, N-amidinopiperidinylCi-4alkyl; and
4-aminocyclohexylC0-2alkyl; and R3 is selected from the group consisting of: hydrogen; aminoC2-5alkyl; guanidinoC2.salkyl; Ci-4alkylguanidinoC2.5alkyl, diCj. 4alkylguanidino-C2-5alkyl; amidinoC2-5alkyl; Ci-4alkylamidinoC2-5alkyl; diCi. 4alkylamidinoC2-5alkyl; Ci-3alkoxy;
CM2alkyl; C6-i2aryl; C6-i2arylalkyl; C2-i2alkenyl; phenyl or substituted phenyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000016_0010
halogen, perfluoroCi-4alkyl,
Figure imgf000016_0011
C1.3al.coxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; naphthyl or substituted naphthyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen,
Figure imgf000016_0013
Figure imgf000016_0012
Ci^alkyl, C|.3alkoxy, nitro, carboxy, cyano, sulfuryl, and hydroxyl; benzyl or substituted benzyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen, perfluoro Q
Figure imgf000016_0014
^alkyl, Cj^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; bisphenylmethyl or substituted bisphenylmethyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci- 4dialkylamino, halogen, perfluoro Ci^alkyl, d^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridyl or substituted pyridyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen, perfluoro Ci^alkyl, Ci^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; p
Figure imgf000017_0001
yridylCi^alkyl, or substituted having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, C\. 4dialkylamino, halogen, perfluoro
Figure imgf000017_0003
Figure imgf000017_0002
Q^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000017_0004
or substituted pyrimidylCi-4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino,
Figure imgf000017_0005
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; triazin-2-ylCi-4alkyl, or substituted triazin-2-ylCi.4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino,
Figure imgf000017_0006
halogen, perfluoro CMalkyl,
Figure imgf000017_0007
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000017_0009
or substituted
Figure imgf000017_0008
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci. 4alkylamino,
Figure imgf000017_0010
halogen, perfluoro
Figure imgf000017_0011
Ci.3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; N-amidinopiperazinyl-N-Co^alkyl, N-amidinopiperidinylC i ^alkyl ; and
4-aminocyclohexylC0-2alkyl .
In certain embodiments, Ri of compounds of Formula (I) is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7-i5arylalkyl having one or more substituents independently selected from amino and nitro.
In certain embodiments, Ri of compounds of Formula (I) is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- 1 H-indazolyl, 3-cyclopropylcarbonyl-lH- indazolyl, 1 -hydroxyethyl- 1 H-indazolyl, 1 H-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-l H-indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro-l H-indazolyl, 6-chloro-lH- indazolyl, 3 -phenyl- 1 H-indazolyl, l-benzyl-3 -phenyl- 1 H-indazolyl, 1-nitrobenzyl-lH- indazolyl, 1 -aminobenzyl- 1 H-indazolyl, 2-methyl-3-cyclopropylcarbonyl-2H-indazolyl, 1- methyl-3 -aminocarbonyl- 1 H-indazolyl, carbonyl-indazolyl , 2-isopropyl-2H-indazolyl, 2- aminocarbonylmethyl-2H-indazolyl, l-cyanomethyl-3-cyclopropylcarbonyl-l H-indazolyl, 2- cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1-moφholinyl-N-ethyl-l H-indazolyl, 2- moφholinyl-N-ethyl-2H-indazolyl, 2-dimethylaminocarbonylmethyl-2H-indazolyl, 2- methoxyethylpropionamide-2H-indazolyl, 1 -ethoxycarbonylmethyl- 1 H-indazolyl, 2- ethoxycarbonylmethyl-2H-indazolyl and 1 -acetoxyethyl- 1 H-indazolyl.
In certain embodiments, R2, R4 and R5 of compounds of Formula (I) are independently selected from the group consisting of:
Ci.]2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from acyl, carboxy, alkylthio, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl, cyano, Ci.5alkylamino, diCi-5alkylamino, hydroxyl, Ci-6alkoxy, and phenylsulfonyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from acyl, carboxy, alkylthio, and phenylsulfonyl; substituted C62aryl substituted with amidosulfonate; arylCi-4alkyl or substituted arylCMalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, CMdialkylamino, C3-6cycloalkyl, halogen, perfluoroCi-4alkyl, Ci-6alkyl, acetylenyl, C1. 3alkoxy, nitro, carboxy, cyano, sulfuryl, hydroxyl,
Figure imgf000018_0001
morphorlinylCi. 6alkyl, aryl, aryloxy, (alkyl)(arylalkyl)amino, heterocyclyl, acyl, amidosulfonate, aminocarbonyl, alkylsulfonate, alkylsulfonyl, alkylthio, arylthio, phenylsulfonate, phenylsulfonyl, morphorlinylCi^alkoxy, jV-formamidyl, and pyrrolidonyl; heterocyclyl or substituted heterocyclyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000018_0002
Cj. 4dialkylamino, halogen, perfluoro
Figure imgf000018_0003
Chalky., Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000018_0004
or substituted
Figure imgf000018_0005
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino, Cj^dialkylamino, C3-6cycloalkyl, halogen, perfluoroCi-4alkyl, Ci-6alkyl, Ci-
tly
Ci-
Figure imgf000018_0006
4dialkylamino, halogen, perfluoro Ci-4alkyl, C^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; and
R3 is selected from the group consisting of: hydrogen;
Ci-i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from acyl, carboxy, alkylthio, and phenylsulfonyl; C2-i2alkenyl or substituted C2.i2alkenyl having one or more substituents independently selected from acyl, carboxy, alkylthio, and phenylsulfonyl; substituted C6-i2aryl substituted with amidosulfonate; arylCi^alkyl or substituted arylCi^alkyl having one or more substituents nitro,
Figure imgf000018_0007
morphorlinylCi-3alkoxy, iV-formamidyl, and pyrrolidonyl; heterocyclyl or substituted heterocyclyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci-
4
Figure imgf000018_0008
alkylamino, Ci^dialkylamino, C3-6cycloalkyl, halogen, perfluoroCi^alkyl, Ci-6alkyl, Ci. 3alkoxy, nitro, carboxy, cyano, sulfuryl, hydroxyl, Ci_6alkyloxyCi.6acyl, morphorlinylCi. alkyl, arylalkyl, aryl, heterocyclyl, acyl, phenylsulfonyl, cycloalkylalkyl, acyloxyalkyl, tly h
Figure imgf000019_0001
alogen, perfluoro C^alkyl, Ci^alkyl, C^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; and cycloalkylalkyl or substituted cycloalkylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci. 4dialkylamino, halogen, perfluoro Ci-4alkyl, C^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl.
In certain embodiment of the compounds described in the preceding paragraph, arylCi-_ialkyl is benzyl, acetylenylbenzyl,
Figure imgf000019_0002
hydroxybenzyl, bisphenylmethyl, naphthylmethyl or 3,3-bisphenylpropyl; and is benzotriazolylCMalkyl, benzopyrazolylCMalkyl, indazolylCMalkyl,
Figure imgf000019_0003
Figure imgf000019_0004
quinolinylCi-4alkyl,
Figure imgf000019_0005
Figure imgf000019_0007
benzimidazolylCi-4alkyl, or
Figure imgf000019_0006
In the embodiment where E is CHR3, the reverse turn mimetic compound of this invention has a structure of Formula (II):
Figure imgf000019_0008
wherein W is -(C=O)-, -(C=O)NH-,-(C=O)O-, -(C=O)S-, -S(O)2- or a bond; and each of Ri, R2, R3, R4 and R5 is the same or different and independently an amino side chain moiety or an amino acid side chain derivative.
In certain embodiments, Ri of compounds of Formula (II) is indazolyl or substituted indazolyl and it may be indazolyl or substituted indazolyl having one or more substituents independently selected from Ci-7alkyl, C6-)2aryl, C7-i5arylalkyl, substituted C7-i5arylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci.iOacyl, amino, halogen, nitro, C2-i0acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl,
tly
Figure imgf000019_0009
diCi^alkyl guanidino, amidino, C i^alkyl amidino, diCi-4alkylamidino, Ci-5alkylamino, diCi.5alkylamino, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl, and hydroxyl; C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino, C i
Figure imgf000019_0010
^alkyl guanidino, amidino,
Figure imgf000019_0011
Ci.5alkylamino, diCi.5alkylamino, and hydroxyl;
C6-i2aryl or substituted C6.i2aryl having one or more substituents independently select CMal
Figure imgf000019_0012
kylamidino, diCi^alkylamidino, Ci-5alkylamino, diCi-5alkylamino, and hydroxyl; Ci-6alkoxy; diCi.salkylamino;
Cό-nheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6-i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen,
Figure imgf000020_0001
cyano, and hydroxyl; and
C7-i3arylalkyl or substituted Cγ.narylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, d^alkylamino, Ci. 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci-6alkoxy, nitro, carboxy, cyano, sulfuryl, Ci. 4alkyl, acetylenyl, hydroxyl, phosphate, dimethylaminoacetate, dimethylaminoalkyl carbamate, and diethyl-phosphono-acetamido; and
Ci_i2alkyl or substituted Ci-i2alkyl having one or more substituents independently
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents
dino, C
Figure imgf000020_0002
i^alkylamidino, diCi^alkyl amidino, Ci.salkylamino, diCi.salkylamino, and hydroxyl;
Ci-6alkoxy; Cδ-nheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted Ce-nheterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from:
4
Figure imgf000020_0003
dialkylamino, halogen, perfluoro Ci^alkyl, Ci^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl.
In certain embodiment of the compounds described in the preceding paragraph, Ri of compounds of Formula (II) may be indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7-i5arylalkyl having one or more substituents independently selected from amino and nitro, and specific examples of Ri may include, but not limited thereto
2-methyl-2H-indazolyl, 1 -methyl- lH-indazolyl, 3-cyclopropylcarbonyl-lH- indazolyl, 1 -hydroxyethyl- lH-indazolyl, lH-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-lH-indazolyl, 1 -benzyl- lH-indazolyl, 3-chloro-lH-indazolyl, 6-chloro-lH- indazolyl, 3-phenyl-lH-indazolyl, l-benzyl-3-phenyl-lH-indazolyl, 1-nitrobenzyl-lH- indazolyl, 1-aminobenzyl-lH-indazolyl, 2-methyl-3-cyclopropylcarbonyl-2H-indazolyl, 1- methyl-3-aminocarbonyl-lH-indazolyl, carbonyl-indazolyl , 2-isopropyl-2H-indazolyl, 2- aminocarbonylmethyl-2H-indazolyl, l-cyanomethyl-3-cyclopropylcarbonyl-lH-indazolyl, 2- cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1-moφholinyl-N-ethyl-lH-indazolyl, 2- morpholinyl-N-ethyl-2H-indazolyl, 2-dimethylaminocarbonylmethyl-2H-indazolyl, 2- methoxyethylpropionamide-2H-indazolyl, 1 -ethoxycarbonylmethyl- 1 H-indazolyl, 2- ethoxycarbonylmethyl-2H-indazolyl and 1-acetoxyethyl-l H-indazolyl;
In certain embodiment of the compounds described in the preceding paragraph, R2 and R5 are independently Ci_i2alkyl, C6-i2aryl, C7-i2arylalkyl, C6-I iheterocyclylalkyl, hydroxybenzyl, or substituted benzyl having a substituents selected from phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, and diethyl-phosphono- acetamido;
R3 is hydrogen or Ci.i2alkyl; and R4 is Ci-i2alkyl, C7-i2arylalkyl, or C2-i2alkenyl.
These compounds may be prepared by utilizing appropriate starting component molecules (hereinafter referred to as "component pieces"). Briefly, in the synthesis of reverse-turn mimetic structures having Formula (I), the reverse-turn mimetic structures of Formula (I) may be prepared by sequential coupling of the individual component pieces either stepwise in solution or by solid phase synthesis as commonly practiced in solid phase peptide synthesis, followed by cyclizing to yield the reverse-turn mimetic structures of this invention. Alternatively, first and second component pieces are coupled to form a combined first-second intermediate, if necessary, third and/or fourth component pieces are coupled to form a combined third-fourth intermediate (or, if commercially available, a single third intermediate may be used), the combined first-second intermediate and third-fourth intermediate (or third intermediate) are then coupled to provide a first-second-third-fourth intermediate (or first-second-third intermediate) which is cyclized to yield the reverse-turn mimetic structures of this invention. Specific component pieces and the assembly thereof to prepare compounds of the present invention are illustrated in Figure 1. For example, a "first component piece" may have the following formula Sl :
Figure imgf000021_0001
wherein Ri is as defined above, and R is a protective group suitable for use in peptide synthesis, where this protection group may be joined to a polymeric support to enable solid- phase synthesis. Suitable R groups include alkyl groups and, in a preferred embodiment, R is a methyl group. In Figure 1, one of the R groups is a polymeric (solid) support, indicated by "Pol" in the Figure. Such first component pieces may be readily synthesized by reductive animation Of H2N-C-Ri with CH(OR)2-CHO, or by a displacement reaction between H2N-C-Ri and CH(OR)2-CH2-LG (wherein LG refers to a leaving group, e.g., a halogen (Hal) group).
A "second component piece" may have the following formula S2:
Figure imgf000021_0002
where P is an amino protection group suitable for use in peptide synthesis, Li is hydroxyl or a carboxyl-activation group, and R2 is as defined above. Preferred protection groups include t-butyl dimethylsilyl (TBDMS), t-butyloxycarbonyl (BOC), methyloxycarbonyl (MOC), 9H-fluorenylmethyloxycarbonyl (FMOC), and allyloxycarbonyl (Alloc). N-Protected amino acids are commercially available; for example, FMOC amino acids are available from a variety of sources. In order for the second component piece to be reactive with the first component piece, Li is a carboxyl-activation group, and the conversion of carboxyl groups to activated carboxyl groups may be readily achieved by methods known in the art for the activation of carboxyl groups. Suitable activated carboxylic acid groups include acid halides where Li is a halide such as chloride or bromide, acid anhydrides where Li is an acyl group such as acetyl, reactive esters such as N-hydroxysuccinimide esters and pentafluorophenyl esters, and other activated intermediates such as the active intermediate formed in a coupling reaction using a carbodiimide such as dicyclohexylcarbodiimide (DCC). Accordingly, commercially available N-protected amino acids may be converted to carboxylic activated forms by means known to one of skill in the art.
In the case of the azido derivative of an amino acid serving as the second component piece, such compounds may be prepared from the corresponding amino acid by the reaction disclo the following formula S3:
Figure imgf000022_0001
where R4, E, and Li are as defined above. Suitable third component pieces are commercially available from a variety of sources or can be prepared by methods well known in organic chemistry. Figure 1 illustrates the preparation of compounds of Formula (I).
Thus, as illustrated above, the reverse-turn mimetic compounds of Formula (I) may be synthesized by reacting a first component piece with a second component piece to yield a combined first-second intermediate, followed by reacting the combined first-second intermediate with third component pieces sequentially to provide a combined first-second- third-fourth intermediate, and then cyclizing this intermediate to yield the reverse-rum mimetic structure.
The syntheses of representative component pieces of this invention are described in Preparation Examples.
The reverse-turn mimetic structures of Formulae (I) and (II) may be made by techniques analogous to the modular component synthesis disclosed above, but with appropriate modifications to the component pieces.
The reverse-turn mimetic structures of the present invention are useful as bioactive agents, such as diagnostic, prophylactic, and therapeutic agents. For example, the reverse- turn mimetic structures of the present invention may be used for modulating a cell signaling transcription factor related peptides in a warm-blooded animal, by a method comprising administering to the animal an effective amount of the compound of Formula (I).
Further, the reverse-turn mimetic structures of the present invention may also be effective for inhibiting peptide binding to PTB domains in a warm-blooded animal; for modulating G protein coupled receptor (GPCR) and ion channel in a warm-blooded animal; for modulating cytokines in a warm-blooded animal.
It has been found that the compounds of the Formula (I), especially compounds of Formula (III) are effective for inhibiting or treating disorders modulated by Wnt-signaling pathway, such as cancer.
Figure imgf000023_0001
Formula (III) is shown above, wherein each of Ri, R4, and R6 is the same or different and independently an amino acid side chain moiety or an animo acid side chain derivative, Xi may be hydrogen, hydroxyl, or halogen, and X2 and X3 may be independently hydrogen, hydroxyl, or any groups that may make the compound a prodrug, such as phosphate, carboxylate, carbamate and substituted amine. hi certain embodiments of the compounds of Formula (III), Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from Ci-7alkyl, C6-i2aryl, C7-isarylalkyl, substituted C7-isarylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci-iOacyl, amino, halogen, nitro, C2-i0acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl, hydroxyalkyl, cyanoCi.3alkyl, morpholinylCi-3alkyl, alkoxyalkylamide and cycloalkylcarbonyl and specific examples of the substituents may be methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7-i5arylalkyl having one or more substituents independently selected from amino and nitro;
R4 is Ci-6alkyl, Ci-6alkoxy, C2.6alkenyl or perfluoroCi.6alkyl; R6 is Cδ-πaryl or substituted C6-i2aryl having one or more substituents independently selected from the group consisting of: halogen, hydroxyl, cyano, Ci-6alkyl, acetyleneyl and Ci-6alkoxy; or Cs-^heterocyclyl or substituted C5-i2heterocyclyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci-6alkyl, and Ci-6alkoxy;
Xi is hydrogen, hydroxyl or halogen; and each of X2 and X3 is independently hydrogen, hydroxyl, phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, diethyl-phosphono-acetamido or halogen.
In certain embodiment of the compounds described in the preceding paragraph, Ri is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- IH- indazolyl, 3-cyclopropylcarbonyl-lH-indazolyl, 1 -hydroxyethyl- lH-indazolyl, 1 H-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-l H-indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro- 1 H-indazolyl, 6-chloro-l H-indazolyl, 3-phenyl-l H-indazolyl, 1 -benzyl-3 -phenyl- IH- indazolyl, 1-nitrobenzyl-l H-indazolyl, 1-aminobenzyl-l H-indazolyl, 2-methyl-3- cyclopropylcarbonyl-2H-indazolyl, 1 -methyl-3-aminocarbonyl- 1 H-indazolyl, carbonyl- indazolyl , 2-isopropyl-2H-indazolyl, 2-aminocarbonylmethyl-2H-indazolyl, 1 -cyanomethyl- 3 -cyclopropylcarbonyl- 1 H-indazolyl, 2-cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1 -morpholinyl-N-ethyl- 1 H-indazolyl, 2-moφholinyl-N-ethyl-2H-indazolyl, 2- dimethylaminocarbonylmethyl-2H-indazolyl, 2-methoxyethylpropionamide-2H-indazolyl, 1 - ethoxycarbonylmethyl-1 H-indazolyl, 2-ethoxycarbonylmethyl-2H-indazolyl and 1- acetoxyethyl-1 H-indazolyl; and R4 is Ci-3alkyl or allyl; and
R6 is phenyl or substituted phenyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci.6alkyl, acetylenyl and Ci-6alkoxy; or pyridyl or substituted pyridyl having one or more substituents independently selected from: halogen, hydroxyl, cyano,
Figure imgf000024_0001
and Cj.6alkoxy. In another aspect of this invention, prodrugs derived from compounds having general
Formula (I) are disclosed. The prodrugs generally increase aqueous solubility and thus bioavailability of compounds having general Formula (I). In certain embodiments, the prodrugs of the present invention have the following general Formula (IV):
(IH)-R7 (IV) wherein one of Ri, R4, R6, X i, X2, and X3 is linked to R7 via Y, wherein:
Y is an oxygen, sulfur, or nitrogen in Ri, R4, or R6, or an oxygen in Xi, X2, or X3; and
R7 is hydroxyalkyl, glycosyl, phosphoryloxymethyloxycarbonyl, substituted or unsubstituted piperidine carbonyloxy, or a salt thereof; or Y-R7 is an amino acid residue, a combination of amino acid residues, phosphate, hemimalate, hemisuccinate, dimethylaminoalkylcarbamate, dimethylaminoacetate, or a salt thereof; and when not linked to R7: Ri, R4, R6, Xi, X2, and X3 are defined as they are in Formula (III). In another aspect of this invention, libraries containing reverse-turn mimetic structures of the present invention are disclosed. Once assembled, the libraries of the present invention may be screened to identify individual members having bioactivity. Such screening of the libraries for bioactive members may involve; for example, evaluating the binding activity of the members of the library or evaluating the effect the library members have on a functional assay. Screening is normally accomplished by contacting the library members (or a subset of library members) with a target of interest, such as, for example, an antibody, an enzyme, a receptor or a cell line. Library members which are capable of interacting with the target of interest are referred to herein as "bioactive library members" or "bioactive mimetics". For example, a bioactive mimetic may be a library member which is capable of binding to an antibody or receptor, or which is capable of inhibiting an enzyme, or which is capable of eliciting or antagonizing a functional response associated, for example, with a cell line. In other words, the screening of the libraries of the present invention determines which library members are capable of interacting with one or more biological targets of interest. Furthermore, when interaction does occur, the bioactive mimetic (or mimetics) may then be identified from the library members. The identification of a single (or limited number) of bioactive mimetic(s) from the library yields reverse-turn mimetic structures which are themselves biologically active, and thus are useful as diagnostic, prophylactic or therapeutic agents, and may further be used to significantly advance identification of lead compounds in these fields.
Synthesis of the peptide mimetics of the library of the present invention may be accomplished using known peptide synthesis techniques, in combination with the first, second and third component pieces of this invention. More specifically, any amino acid sequence may be added to the N-terminal and/or C-terminal of the conformationally constrained reverse-turn mimetic. To this end, the mimetics may be synthesized on a solid support (such as PAM resin) by known techniques (see, e.g., John M. Stewart and Janis D. Young, Solid Phase Peptide Synthesis, 1984, Pierce Chemical Comp., Rockford, 111.) or on a silyl-linked resin by alcohol attachment (see Randolph et al., J. Am Chem. Soc. 1 17:5712-14, 1995).
In addition, a combination of both solution and solid phase synthesis techniques may be utilized to synthesize the peptide mimetics of this invention. For example, a solid support may be utilized to synthesize the linear peptide sequence up to the point that the conformationally constrained reverse-turn is added to the sequence. A suitable conformationally constrained reverse-turn mimetic structure which has been previously synthesized by solution synthesis techniques may then be added as the next "amino acid" to the solid phase synthesis (i.e., the conformationally constrained reverse-turn mimetic, which has both an N-terminus and a C-terminus, may be utilized as the next amino acid to be added to the linear peptide). Upon incorporation of the conformationally constrained reverse-turn mimetic structures into the sequence, additional amino acids may then be added to complete the peptide bound to the solid support. Alternatively, the linear N-terminus and C-terminus protected peptide sequences may be synthesized on a solid support, removed from the support, and then coupled to the conformationally constrained reverse-turn mimetic structures in solution using known solution coupling techniques. hi one aspect of this invention, methods for constructing the libraries are disclosed. Traditional combinatorial chemistry techniques (see, e.g., Gallop et al., J. Med. Chem. 37:1233-1251, 1994) permit a vast number of compounds to be rapidly prepared by the sequential combination of reagents to a basic molecular scaffold. C ombinatorial techniques have been used to construct peptide libraries derived from the naturally occurring amino acids. F or example, by taking 20 mixtures of 20 suitably protected and different amino acids and coupling each with one of the 20 amino acids, a library of 400 (i.e., 202) dipeptides is created. Repeating the procedure seven times results in the preparation of a peptide library comprised of about 26 billion (i.e., 208) octapeptides.
Specifically, synthesis of the peptide mimetics of the library of the present invention may be accomplished using known peptide synthesis techniques, for example, the General Scheme of Reverse-Turn Mimetic Library, as follows:
PyBOP, HOAT
Figure imgf000025_0001
DIEA, CH2CI2, rt CH2CI2
Figure imgf000025_0002
Figure imgf000025_0003
DIC1HOBT, DIEA, CH2CI2
Formic acid, rt
Figure imgf000025_0004
Synthesis of the peptide mimetics of the libraries of the present invention was accomplished using a FlexChem Reactor Block which has 96 well plates by known techniques. In the above scheme 'Pol' represents a bromoacetal resin (Advanced ChemTech) and detailed procedure is illustrated below.
Step 1
A bromoacetal resin (37mg, 0.98 mmol/g) and a solution of Ri -amine in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates. The reaction mixture was shaken at 600C using a rotating oven [Robbins Scientific] for 12 hours. The resin was washed with DMF, MeOH, and then DCM
Step 2
A solution of commercially available Fmoc-NH-CH(R2)-COOH (4 equiv.), PyBob (4 equiv.), HOAt (4 equiv.), and DIEA (12 equiv.) in DMF was added to the resin. After the reaction mixture was shaken for 12 hours at room temperature, the resin was washed with DMF, MeOH, and then DCM.
Step 3
To the resin swollen by DMF before reaction was added 25% piperidine in DMF and the reaction mixture was shaken for 30 min at room temperature. This deprotection step was repeated again and the resin was washed with DMF, Methanol, and then DCM. A solution of hydrazine acid (4 equiv.), HOBt (4 equiv.), and DIC (4 equiv.) in DMF was added to the resin and the reaction mixture was shaken for 12 hours at room temperature. The resin was washed with DMF, MeOH, and then DCM.
Step 4
The resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
To generate these block libraries the key intermediate hydrazine acids were synthesized according to the procedure illustrated in Preparation Example 1.
Table 2 shows the compounds which were prepared according to the present invention, of which representative preparation is given in Preparation Examples.
[Table 2]
REVERSE TURN MIMETICS LIBRARY
Figure imgf000026_0001
Figure imgf000027_0001
Figure imgf000028_0001
Figure imgf000029_0001
Figure imgf000030_0001
Figure imgf000031_0001
Figure imgf000032_0001
Figure imgf000033_0001
Figure imgf000034_0001
Figure imgf000035_0001
Figure imgf000036_0001
Figure imgf000037_0001
Figure imgf000038_0001
Belows are NMR data of some of the compounds prepared according to the above procedure:
(6S,9aS)-8-((lH-indazol-7-yI)methyl)-2-allyl-N-benzyI-6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro- 2H-pyrazino[2,l-c][l,2,4Jtriazine-l(6H)-carboxamide (Compound No. 3 in Table 2)
1H NMR (CDCl3, 300 MHz) δ 8.09 (s, IH), δ 7.73 (d, J = 3.0 Hz, IH), δ 7.37-7.22 (m, 5H), δ 7.1 1-7.03 (m, 2H), δ 6.90 (d, J = 9.0 Hz, 1 H), δ 6.74 (d, J = 6.0 Hz, 1 H), δ 6.57 (d, J = 6.0 Hz, 2H), δ 5.65-4.56 (m, IH), δ 5.48-5.35 (m, IH), δ 5.31 (1, 7= 3.0 Hz, IH), δ 5.16-4.95 (m, 3H), δ 4.55 (d, J = 15.0 Hz, IH), δ 4.40-4.12 (m, 2H), δ 3.46-3.23 (m, 8H)
(6S,9aS)-2-aUyl-N-benzyl-6-(4-hydroxy-benzyl)-8-((l-(3-nitrobenzyl)-lH-indazol-7-yl)methyl)-4,7- dioxo-hexahydro-2H-pyrazino[2,l-c][l,2,4]triazine-l(6H)-carboxamide (Compound No. 20 in Table
1H NMR (CDCl3, 300 MHz) δ 8.24 (s, IH), δ 8.09 (d, J = 9.0 Hz, IH), δ 7.83-7.12 (m, 3H), δ 7.10 (t, J = 9.0 Hz, IH), δ 7.32-7.17 (m, 4H), δ 7.10 (t, J= 9.0 Hz, IH), δ 6.92-6.83 (m, 3H), δ 6.61 (d, J= 9.0 Hz, IH), δ 5.79-5.68 (m, IH), δ 5.41-5.36 (m, IH), δ 5.12-4.88 (m, 4H), δ 4.65 (d, J= 18.0 Hz, IH), δ 4.28-4.18 (m, 2H), δ 3.55-3.40 (m, 4H), δ 3.25-3.07 (m, 3H), δ 2.85 (dd, J= 3.0 Hz, J= 12.0 Hz, IH)
(6S,9aS)-2-allyl-8-((l-(3-aminobenzyl)-lH-indazol-7-yl)methyl)-N-benzyl-6-(4-hydroxy-benzyl)-4,7- dioxo-hexahydro-2H-pyrazino[2,l-c][l,2,4]triazine-l(6H)-carboxamide (Compound No. 6 in Table
? 1H> NMR (CDCl3, 300 MHz) δ 8.09 (s, IH), δ 7.73-7.68 (m, IH), δ 7.38-7.21 (m, 5H), δ 7.1 1 (t, J= 9.0
Hz, IH), δ 7.00-6.95 (m, 4H), δ 6.69-6.64 (m, 3H), δ 6.44 (d, y= 9.0 Hz, IH), δ 6.23-6.18 (m, 2H), δ 5.71 (s, 2H), δ 5.59-5.49 (m, IH), δ 5.41-5.34 (m, IH), δ 5.18-5.13 (m, 2H), δ 5.04 (d, J= 9.0 Hz, IH), δ 4.84 (ty J= 15.0 Hz, 2H), δ 4.45-4.25 (m, 2H), δ 3.44-3.22 (m, 6H), δ 2.99-2.95 (m, 2H) sodium 4-(((6S,9aS)-8-((lH-mdazol-7-yl)methyl)-2-aUyl-l-(benzyIcarbamoyl)-4,7-dioxo-octahydro- lH-pyrazino[2,l-c][l,2,4]triazin-6-yl)methyl)phenyl phosphate (Compound No. 23 in Table 2)
1H NMR (CDCl3, 300 MHz) δ 8.08 (s, IH), δ 7.72 (t, J= 6.0 Hz, IH), δ 7.34-7.09 (m, 6H), δ 7.00-6.92 (m, 3H), δ 5.56-5.47 (m, IH), δ 5.40-5.36 (m, IH), δ 5.18 (t, J = 6.0 Hz, IH), δ 4.92-4.57 (m, 5H), δ 4.33-4.14 (m, 2H), δ 3.61-3.48 (m, 2H), δ 3.28-3.14 (m, 5H)
(6S, 9aS) 2-aUyl-6-(4-hydroxy-benzyl)-8-(lH-indazoI-4-ylmethyl)-4,7-dioxo-hexahydro-pyrazino[2,l- c][l, 2,4] triazine-1-car boxy lie acid benzylamide (Compound No. 2 in Table 2)
1H NMR(CDCl3, 300 MHz) δ 9.23 (s, IH), 8.10 (s, IH), 7.80 (t, J= 6.3 Hz, IH), 7.17-7.48 (m, 8H), 6.85 (t, J= 8.4 Hz, 3H), 6.65 (d, J= 8.4 Hz, 2H), 5.72-5.77 (m, IH), 5.36-5.41 (dd, J= 3.6 Hz, 10.8 Hz, IH), 4.89-5.09 (m, 5H), 4.64 (d, J= 15 Hz, IH), 4.13-4.22 (m, 2H), 3.39-3.60 (m, 2H), 3.02-3.25 (m, 8H)
(6S,9aS)-2-allyl-N-benzyl-6-(4-hydroxy-benzyl)-8-((2-methyl-2H-indazol-7-yl)methyl)-4,7-dioxo- hexahydro-2H-pyrazino[2,l-c][l,2,4]triazine-l(6H)-carboxamide (Compound No. 18 in Table 2) 1H NMR (CDCl3, 300 MHz) δ 7.88 (s, IH), δ 7.59 (d, J= 9.0 Hz, IH), δ 7.38-7.22 (m, 4H), δ 7.12-7.03 (m, 2H), δ 6.94 (d, J = 9.0 Hz, 2H), δ 6.71 (t, J= 6.0 Hz, IH), δ 6.58 (d, J= 6.0 Hz, 2H), δ 5.61-5.49 (m, 2H), δ 5.35 (t, J= 6.0 Hz, IH), δ 5.11-4.91 (m, IH), δ 4.40-4.34 (m, 2H), δ 4.17 (s, 3H), δ 3.40-3.25 (m, 6H) (6S, 9aS) 2-allyl-6-(4-hydroxy-benzyl)-8-(l-methyl-lH-indazol-4-ylmethyl)-4,7-dioxo-hexahydro- ρyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamiden (Compound No. 19 in Table 2)
!H NMR(CDCl3, 300 MHz) δ 8.08 (s, IH), 7.21-7.38 (m, 8H), 6.99 (d, J= 8.4 Hz), 6.89-6.94 (m, IH),
6.62-6.69 (m, 3H), 5.40-5.59 (m, 2H), 5.34 (t, J= 5.4 Hz, IH), 5.17-5.23 (m, IH), 5.07 (d, J= 10.5 Hz,
IH), 4.67-4.96 (m, 2H), 4.26-4.45 (m, IH), 4.08 (s, 3H), 3.23-3.44 (m, 9H)
Phosphoric acid mono-{4-[(6S, 9aS) 2-allyI-l-benzylcarbamoyl-8-(l-methyl-lH-indazol-4-ylmethyl)-
4,7-dioxo-octahydro-pyrazino[2,l-c][l,2,4]triazin-6-ylmethyl]-phenyl} ester disodium salt
(Compound No. 30 in Table 2)
1H NMR(D2O, 300 MHz) δ 7.99 (s, IH), 7.09-7.44 (m, 12H), 6.91 (d, J= 6.3 Hz, IH), 5.58-5.61 (m, 2H), 5.32 (t, J= 6.3 Hz, IH), 4.96-5.01 (m, 2H), 4.63-4.77 (m, 2H), 4.23-4.46 (m, 2H), 3.98 (s, 3H), 3.52-3.82
(m, 3H), 3.25-3.37 (m, 6H)
(6S, 9aS) 2-aUyl-8-(2-cyclopropylmethyl-2H-indazol-7-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo- hexahydro-pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 14 in Table 2)
1H NMR ( CDCl3) : 6 8.041 (s, IH), 7.641-7.599 (d, J =12.6 Hz, 1 H), 7.371-6.957 (m, 9 H), 6.723-6.669 (t, J =12.3 Hz, 1 H), 6.613-6.585 (d, J =8.4 Hz, 2 H), 5.652-5.561 (dt , J = 3.9 Hz, J = 10.5 Hz, 2 H), 5.162-4.853 (m, 4 H), 4.444-4.287 (dt , J = 6.0 Hz, J = 15.0 Hz, 2 H), 4.266-4.242 (d, J = 7.2 Hz, 2 H), 3.682-3.537 (m, 8 H)
Phosphoric acid mono-{4-[(6S, 9aS) 2-allyl-l-benzylcarbamoyl-8-(2-cyclopropyl methyl-2H-indazol- 7-ylmethyl)-4,7-dioxo-octahydro-pyrazino[2,l-c](l,2,4J triazin-6-ylmethyl]-phenyl} ester ester disodium salt (Compound No.31 in Table 2) 1H NMR ( D2O) : δ 8.179 (s, 1 H), 7.629-7.604 (d, J =7.5 Hz, 1 H), 7.341-7.002 (m, 1 1 H), 5.666-5.433 (m, 2 H), 5.298-5.257 (t, J =6.6 Hz, 1 H), 5.070-5.019 (d, J =75.3 Hz, 1 H), 4.834-4.723 (m, 1 H),
4.517-4.460 (d, J = 17.1 Hz, 1 H), 4.419-4.367 (d, J = 15.6Hz, 1 H), 4.245-4.136 (m, 3 H), 3.656-3.598 (d, J = 17.4 Hz, 1 H), 3.539-3.463 (t, J = 11.7 Hz, 1 H), 3.384-3.151 (m, 6 H), 1.330-1.239 (tt, J = 7.5 Hz, J = 2.4 Hz, 1 H), 0.546-0.323 (m, 4 H), Phosphoric acid mono-{4-[(6S, 9aS) 2-allyl-l-benzylcarbamoyl-8-(lH-indazol-4-ylmethyl)-4,7-dioxo- octahydro-pyrazino[2,l-c][l,2,4]triazin-6-ylmethyl]-phenyl} ester disodium salt (Compound No. 33 in Table 2)
1H NMR(D2O, 300 MHz) δ 8.18 (s, IH), 7.67 (d, J= 8.7 Hz, IH), 7.31-7.52 (m, 6H), 7.06-7.14 (m, 6H), 5.53-5.65 (m, 2H), 5.34 (t, J= 5.1 Hz, IH), 5.01-5.16 (m, 2H), 4.67-4.90 (m, 3H), 4.28-4.47 (m, 2H), 3.57-3.75 (m, 2H), 3.32-3.43 (m, 7H) (6S, 9aS) 2-allyl-8-(3-amino-lH-indazol-7-ybnethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro- pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 5 in Table 2)
Η NMR (CDCl3, 300 MHz) δ 7.60 (d, J = 8.1 Hz, 1 H), δ 7.53-7.25 (m, 5H), δ 7.13 (d, J = 6.9 Hz, 1 H), δ 7.01 (t, J= 7.5 Hz, IH), δ 6.84 (d, J = 8.1 Hz, 2H), δ 6.65 (t, J = 5.7 Hz, IH), δ 6.57 (d, J = 8.1 Hz, 2H), δ 5.70-5.61 (m, IH), δ 5.28 (t, J= 5.7 Hz, IH), δ 5.21 (d, J= 10.2 Hz, IH), δ 5.09 (d, J= 17.1 Hz, IH), δ 4.95-4.91 (m, 2H), δ 4.55 (d, J= 14.4 Hz, IH), δ 4.45 (dd, J= 6.3 Hz , J= 14.7 Hz, IH), δ 4.34 (dd, J = 6.O Hz 1 J= 15.0 Hz, IH), δ 3.52-3.27 (m, 7H) Acetic acid 2-{7-[(6S, 9aS) 2-aIlyI-l-benzyIcarbamoyl-6-(4-hydroxy-benzyl)-4,7-dioxo-octahydro- pyrazino[2,l-c][l,2,4]triazin-8-ylmethyl)-indazol-l-yl}-ethyl ester (Compound No. 11 in Table 2)
TH NMR(CDCl3, 300 MHz) δ 8.05 (s, IH), 7.71 (d, J= 8.1 Hz, IH), 7.22-7.38 (m, 6H), 7.12 (t, J= 7.2 Hz, IH), 6.97-7.03 (m, 3H), 6.68-6.71 (m, 3H), 5.30-5.56 (m, 4H), 4.99-5.06 (m, 2H), 4.75-4.88 (m, 3H), 4.27-4.47 (m, 4H), 3.25-3.47 (m, 9H), 1.91 (s, 3H)
(6S, 9aS) 2-aIlyl-6-(4-hydroxy-benzyl)-8-[l-(2-hydroxy-ethyl)-lH-indazol-7-ylmethyl]-4,7-dioxo- hexahydro-pyrazino[2,l-c][l,2,4)triazine-l-carboxylic acid benzylamide (Compound No. 17 in Table
2)
1H NMR(CDCl3, 300 MHz) δ 8.04 (s, IH), 7.70 (d, J= 7.8 Hz, IH), 7.21-7.38 (m, 5H), 6.99-7.12 (m, 5H), 6.66-6.69 (m, 3H), 5.44-5.55 (m, 3H), 5.35 (t, J= 5.1 Hz, IH), 4.90-5.01 (m, 2H), 4.56-4.77 (m, 3H), 4.24-4.44 (m, 2H), 4.03-4.1 1 (m, 2H), 3.17-3.48 (m, 8H), 3.02 (t, J= 5.7 Hz, IH)
(6S, 9aS) 2-allyl-8-(3-chloro-lH-indazol-7-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro- pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 15 in Table 2) 1H NMR ( CDCl3) : δ 1 1.506 (s, 1 H), 7.697-7.670 (d, J =8.1 Hz, 1 H), 7.392-7.096 (m, 8 H),
6.912-6.884 (d, J = 8.4 Hz, 2 H), 6.738-6.698 (t, J = 6.0 Hz, 1 H), 6.556-6.529 (d, J = 8.4 Hz, 2 H), 5.682-5.549 (dt, J = 6.3 Hz, J = 10.2 Hz, 1 H), 5.366-5.291 (m, 2 H), ), 5.187-5.153(d, J = 10.2 Hz, 1 H), 5.075-5.039 (d, J = 10.8 Hz, 1 H), 5.028-4.982 (d, J = 13.8 Hz, 1 H), 4.572-4.4.524 (d, J = 14.4 Hz, 1 H), 4.462-4.294 (dt, J = 6.0 Hz, J = 15.0 Hz, 2 H), 3.439-3.253 (m, 8 H)
Phosphoric acid mono-{4-[(6S, 9aS) 2-allyM-benzylcarbamoyl-8-(3-chloro-lH-indazol-7-yImethyl)- 4,7-dioxo-octahydro-pyrazino[2,l-c][l,2,4]triazin-6-yunethyl]-phenyl} ester disodium salt (Compound No. 35 in Table 2) 1H NMR ( D2O) : δ 7.604-7.574 (t, J =9.0 Hz, 1 H) 7.369-7.166 (m, 7 H), 7.071-6.991 (q, J =6.0 Hz1 4 H), 5.640-5.447 (m, 2 H), 5.262-5.223 (t, J = 6.0 Hz, 1 H), 4.965-4.931 (d, J = 10.2 Hz, 1 H), 4.894-4.683 (m, 3 H), 4.392-4.183 (dd, J = 15.6 Hz, J = 47.4 Hz, 2 H), 3.678-3.250 (m, 8 H)
(6S, 9aS) 2-AUyl-8-(l-benzyl-3-phenyl-lH-indazol-7-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo- hexahydro-pyrazino[2,l-c][l,2,4]triazine-l-carboxyu'c acid benzylamide (Compound No. 10 in Table 2)
1H NMR ( CDCl3) : δ 7.538-7.186 (m, 17 H), 7.110-6.951 (m, 3 H), 6.979-6.951 (d, J = 8.4 Hz, 2 H), 6.738-6.697 (t, J = 6.0 Hz, 1 H), 6.622-6.593 (d, J = 8.4 Hz, 2 H), 5.676-5.499 (m, 4 H), 5.367-5.329 (t, J = 5.7 Hz, I H), 5.120-4.984 (q, J = 15.0 Hz, 2 H), 5.059-5.034 (d, J = 7.5 Hz, 1 H), 4.984-4.884 (d, J = 30 Hz, 1 H), 4.478-4.303 (dt, J = 6.0 Hz, J = 15.0 Hz, J = 26.3 Hz, 2 H), 3.766-3.601 (m, 2 H), 3.452-3.224 (m, 6 H)
(6S, 9aS) 2-allyl-6-(4-hydroxy-benzyl)-4,7-dioxo-8-(3-phenyl-l H-indazol-7-ylmethy l)-hexahydro- pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 21 in Table 2)
1H NMR ( CDCl3) : δ 8.037-8.012 (d, J = 7.5 Hz, 1 H), 7.997-7.973 (d, J = 7.2 Hz, 2 H), 7.522-7.472 (t, J = 7.2 Hz, 2 H), 7.522-7.100 (m, 10 H), 6.926-6.898 (d, J = 8.4 Hz, 2 H), 6.726-6.686 (t, J = 6.0 Hz, 1 H), 6.557-6.529 (d, J = 8.4 Hz, 2 H), 5.690-5.539 (dt, J = 6.0 Hz, J = 10.2 Hz, 1 H), 5.374 -5.292 (m, 2 H), 5.175-5.141 (d, J = 10.5 Hz, 1 H), 5.1 10-5.062 (d, J = J 4.4 Hz, 1 H), 5.027-4.970 (d, J = 17.1 Hz, 1 H), 4.614-4.566 (d, J = 14.4 Hz, 1 H), 4.458-4.284 (ddd, J = 6.0 Hz, J = 14.7 Hz J = 20.7 Hz,2 H), 3.491-3.228 (m, 8 H) (6S, 9aS) 2-aUyl-8-(l-benzyl-lH-indazol-3-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro- pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 9 in Table 2)
1H NMR ( CDCl3) : δ 7.984-7.957 (d, J = 8.1 Hz, 1 H), 7.397-7.129 (m, 14 H), 6.938-6.910 (d, J = 8.4 Hz, 2 H), 6.695-6.654 (t, J = 6.0 Hz, 1 H), 6.480-6.452 (d, J = 8.4 Hz, 2 H), 5.688-5.538 (dt, J = 6.6 Hz, J = 16.8 Hz, I H), 5.405-5.356 (dd, J = 5. I Hz, J = 9.6 Hz, 1 H), 5.326-5.287 (t, J = 6.0 Hz, I H),
5Λ74~5Λ26 (d, J = 14.4 Hz, 1 H), 5.1 15-5.079 (d, J = 10.8 Hz, 1 H), 4.996-4.938 (d, J = 17.4 Hz, 1 H), 4.890-4.841 (d, J = 14.7 Hz, 1 H), 4.459-4.283 (ddd, J = 6.3 Hz, J = 15.0 Hz J = 31.8 Hz,2 H), 3.550-3.212 (m, 8 H) (6S, 9aS) 2-aUyl-8-(5-chloro-lH-mdazol-7-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro- pyrazino[2,l-c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 16 in Table 2)
1H NMR ( CDCl3) : δ 8.064 (s, 1 H), 7.735-7.730 (d, J =1.5 Hz, 1 H), 7.404-7.245 (m, 8 H), 7.124-7.1 19 (d, J =1.5 Hz, 1 H), 6.932-6.904 (d, J = 8.4 Hz, 2 H), 6.730-6.690 (t, J = 6.0 Hz, 1 H), 6.578-6.550 (d, J = 8.4 Hz, 2 H), 5.708-5.575 (dt, ./ = 6.3 Hz, J = 12.6Hz, 1 H), 5.393-5.300 (m, 2 H), 5.230-5.197 (d, J = 9.9 Hz, 1 H), 5.064-5.005 (d, J = 17.7 Hz, 2 H), 4.563-4.516 (d, J = 14.1 Hz, 1 H), 4.474-4.297 (ddd, J = 6.0 Hz, J = 14.7 Hz, J = 20.7 Hz, 2 H), 3.458-3.255 (m, 8 H)
(6S, 9aS) 2-aUyI-8-(3-cyclopropanecarbonyl-lH-indazol-7-ylmethyl)-6-(4-hydroxy-benzyl)-4,7-dioxo- hexahydro-pyrazino[2,l-cJ[l,2,4Jtriazine-l-carboxylicacid benzylamide (Compound No. 12 in Table 2)
Η-NMR(300MHz, CDCl3) δ8.32~8.29(dd, J=2.0Hz , J=2.0Hz , IH) δ 7.34~7.14(m, 8H) δ 6.84(d, J=8.3Hz , 2H) δ 6.70(t, J=5.9Hz , IH) δ 6.49(d, J=8.4Hz , 2H) δ 5.60-5.49(m, IH) δ 5.34~5.24(m, 2H) δ 5.12(d, J= 10.3Hz , 2H) δ 4.93(d, J= 17.1 Hz , IH) δ 4.42~4.25(m, 2H) δ 3.35(d, J=7.8Hz , 2H) δ 3.31~3.27(m, 2H) δ 3.25-3.17(m, 2H) δ 1.28-1.15(m, 3H) δ 1.04~0.97(m, 2H)
(6S, 9aS) 2-allyl-6-(4-hydroxy-benzyl)-8-(lH-indazol-3-ylmethyI)-4,7-dioxo-hexahydro-pyrazino[2,l- c][l,2,4]triazine-l-carboxylic acid benzylamide (Compound No. 1 in Table 2) 1H NMR(CDCl3, 300 MHz) δ 10.55 (s, IH), 8.00 (d, J= 8.1 Hz, IH), 7.18-7.36 (m, 8H), 6.80 (d, J= 8.4 Hz, 2H), 6.68 (t, J = 6.0 Hz, IH), 6.35 (d, J= 8.4 Hz, 2H), 5.58-5.68 (m, IH), 5.02-5.31 (m, 5H), 4.75 (d, J= 14.7 Hz, 1 H), 4.23-4.40 (m, 2H), 3.27-3.57 (m, 8H)
Phosphoric acid disodium salt mono-{4-[(6S, 9aS) 2-auyl-l-benzylcarbamoyl-8-(l-benzyl-3-phenyl- lH-indazol-7-ylmethyl)-4,7-dioxo-octahydro-pyrazino[2,l-c][l,2,4]triazin-6-ylmethyl]-phenyl} ester (Compound No. 36 in Table 2) 1H-NMR (300 MHz, CDCl3) : δ 3.02-3.36(m, IH), 3.28-3.36(m, 4H), 3.48(d, J=17.1Hz , IH), 3.62(dd, J=I 1.3 Hz, J=21.7 Hz , 2H), 3.80(dd, J=3.6 Hz, J=I 1.5 Hz , IH), 4.25(dd, J=4.7 Hz, J=15.2 Hz , IH), 4.33-4.38(m, IH), 4.40(dd, J=6.7 Hz, J=15.1 Hz , IH), 4.83(d, J=14.8 Hz , IH), 4.98(d, J=14.8 Hz , IH), 5.1 l(t, J= 10.5 Hz , 2H), 5.18(dd, J=2.6 Hz, J=6.3 Hz , IH), 5.46-5.58(m, 2H), 6.69(t, J=6.4 Hz , NH), 6.79(d, J=8.4 Hz , 2H), 6.92-6.95(m, 4H), 7.12-7.29(m, 10H), 7.42-7.55(m, 6H).
The libraries of the present invention were screened for bioactivity by various techniques and methods. In general, the screening assay may be performed by (1) contacting the mimetics of a library with a biological target of interest, such as a receptor, to allow binding between the mimetics of the library and the target to occur, and (2) detecting the binding event by an appropriate assay, such as the calorimetric assay disclosed by Lam et al. (Nature 354:82-84, 1991) or Griminski et al. (Biotechnology 12: 1008-101 1, 1994) (both of which are incorporated herein by reference). In a preferred embodiment, the library members are in solution and the target is immobilized on a solid phase. Alternatively, the library may be immobilized on a solid phase and may be probed by contacting it with the target in solution.
Inhibition activity against Wnt signaling was measured by the TopFlash reporter. The lower IC50 value means the higher inhibition activity. A compound can be classified as active if IC50 is 10 μM or below. When IC50 is 5~10μM, the compound can be a candidate for a pharmaceutical. A compound is deemed strong if IC50 is l~5μM, and a compound is deemed very strong if IC50 is 1 μM or below.
Most of the compounds of the present invention showed IC50 of 5μM or below, that means they have a strong inhibition activity against Wnt signaling.
Table 3 below shows compounds for bioactivity test selected from the library of the present invention and IC50 values thereof, which were measured by the Reporter gene assay as described in Example 2.
[Table 3]
IC50(uM) MEASURED BY THE TopFlash REPORTER GENE ASSAY OF SELECTED
LIBRARY COMPOUNDS
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
It has been found according to the present invention that compounds of general Formula (I) have less CYP3A4 inhibitory activity (higher IC50). The details of the less measurement of CYP3A4 inhibitory activity are disclosed in Example 1. Less CYP3A4 inhibitory activity means that the compounds of the present invention are more pharmacologically favorable in terms of adverse reactions.
Table 4 below shows compounds for bioactivity test selected from the library of the present invention and IC50 values thereof, which were measured by the P450 CYP3A4 Inhibitory Activity Screening as described in Example 1. [Table 4]
IC50 (μM) MEASURED BY P450 CYP3A4 INHIBITORY ACTIVITY SCREENING OF
(μM)
Figure imgf000046_0001
Figure imgf000047_0001
The present invention is also related to methods for preventing or treating an acute myeloid leukemia comprising administering to the subject the compound having Formula (I) above. In one aspect, the present invention provides compounds that inhibit the formation of a complex of β-catenin, p300 and TCF binding onto c-Myc protein and formation of a complex of β-catenin, p300 and TCF binding onto survivin promoter. In another aspect, the present invention provides compounds, in particular those having Formula (II), that control c-Myc protein. It has been found according to the present invention that compounds of general
Formula (I) affect the cell proliferation and inhibit the growth of AML cancer cells, as described in Example 3.
GI50 of MV-4-11 shows cell growth inhibition activity against AML cancer cells. The lower GI50 value means the higher inhibition activity. A compound can be classified as active if GI50 is 10 μM or less. When GI50 is 5~10μM, the compound can be a candidate for a pharmaceutical. A compound is deemed strong if GI 50 is l~5μM, and a compound is deemed very strong if GI 50 is 1 μM or below. Most of the compounds of the present invention showed GI50 of 5μM or below, that means they have strong inhibition activity against AML cancer cells.
Table 5 below shows compounds for bioactivity test selected from the library of the present invention and GI50 values thereof, which were measured by Cell Growth Inhibition Assay as described in Example 3.
[Table 5]
CELL GROWTH INHIBITION ACTIVITY (GI50) ON AML CANCER CELLS OF SELECTED LIBRARY COMPOUNDS
Figure imgf000048_0001
Figure imgf000049_0001
Figure imgf000050_0001
The following non-limiting examples illustrate the compounds, and the use of this invention. PREPARATION EXAMPLE 1
Preparation of (N-Fmoc-N -R4-hydrazino)-acetic acid
Figure imgf000051_0001
( 1 ) Preparation of N-Fmoc-./V-Methyl Hydrazine
Figure imgf000051_0002
A 2L, two-necked, round-bottomed flask was fitted with a glass stopper and a calcium tube. A solution of R4-hydrazine (20 g, 139 mmol, where R4 is methyl) in THF (300 mL) was added and a solution of DiBoc (33 g, 153 mmol) in THF was added. Saturated sodium bicarbonate aqueous solution (50OmL) was added dropwise via addition funnel over 2 hours with vigorous stirring. After 6 hours, a solution of Fmoc-Cl (39 g, 153 mmol) in THF was added slowly. The resulting suspension was stirred for 6 hours at O0C. The mixture was extracted with ethyl acetate (EA, 500 mL) and the organic layer was retained. The solution was dried with sodium sulfate and evaporated in vacuo. The next step proceeded without purification.
A 1 L, two-necked, round-bottom-flask was fitted with a glass stopper and a calcium tube. A solution of the product from the previous step in MeOH (30OmL) was added and cone. HCl (30 mL, 12 N) was added slowly via addition funnel with magnetic stirring in ice water bath and stirred overnight. The mixture was extracted with EA (1000 mL) and the organic layer was retained. The solution was dried with sodium sulfate and evaporated in vacuo. The residue was purified by recrystallization with n-hexane and EA to give N- Fmoc-iV- methyl hydrazine (32.2 g, 83 %). 1HNMR (DMSO-D6) δ 7.90-7.88 (d, J=6 Hz, 2H,), δ 7.73-7.70 (d, J=9 Hz, 2H,), 7.44-7.31 (m, 4H), 4.52-4.50 (d, J=6 Hz, 2H), 4.31-4.26 (t, J=6 Hz, IH), 2.69 (s, IH).
(2) Preparation of (N-Fmoc-N'-R^hydrazino^acetic acid t-butyl ester
Figure imgf000051_0003
A 1 L, two-necked, round-bottom-flask was fitted with a glass stopper and reflux condenser connected to a calcium tube. A solution of N-Fmoc-N'-R4 hydrazine (20 g, 75 mmol) in toluene (300 mL) was added. A solution of t-butylbromo acetate (22 g, 1 11 mmol) in toluene (50 mL) was added slowly. Cs2CO3 (49 g, 149 mmol) was added slowly. NaI (1 1 g, 74 mmol) was added slowly with vigorous stirring. The reaction mixture was stirred at reflux temperature over 1 day. The product mixture was filtered and extracted with EA (500 mL). The solution was dried over sodium sulfate and evaporated in vacuo. The product was purified by chromatography with hexane : EA = 2 : 1 solution to give (N- Fmoc-N'-methyl-hydrazino)-acetic acid t-butyl ester (19.8 g, 70 %). 1H-NMR (CDCl3-d) δ 7.78-7.75 (d, J=9 Hz, 2H5), δ 7.61-7.59 (d, J=6 Hz, 2H,), 7.43-7.26 (m, 4H), 4.42-4.40 (d, J=6 Hz, 2H), 4.23 (b, IH), 3.57 (s, 2H), 2.78 (s, 3H), 1.50 (s, 9H). (3) Preparation of (N-Fmoc-N'-methyl-hydrazino)-acetic acid
Figure imgf000052_0001
A lL, two-neck, round-bottomed-flask was fitted with a glass stopper and reflux condenser connected to a calcium tube. (jV-Fmoc-iV-R4-hydrazino)-acetic acid t-butyl ester (20 g, 52 mmol) was added. A solution of HCl (150 mL, 4 M solution in dioxane) was added slowly with vigorous stirring in an ice water bath. The reaction mixture was stirred at RT over 1 day. The solution was concentrated completely under reduced pressure at 400C. A saturated aq. NaHCO3 solution (100 mL) was added and the aqueous layer was washed with diethyl ether (100 mL). Cone. HCl was added dropwise slowly at 00C (pH 2- 3). The mixture was extracted and the organic layer was retained (500 mL, MC). The solution was dried with sodium sulfate and evaporated in vacuo. The residue was purified by recrystallization with n-hexane and ethyl acetate to give (N-Fmoc-N'-methyl-hydrazino)- acetic acid (12 g, 72 %). 1H-NMR (DMSOd6) δ 12.38 (s, IH), 8.56 (b, IH), 7.89-7.86 (d, J=9 Hz, 2H5), 7.70-7.67 (d, J=9 Hz, 2H,), 7.43-7.29 (m, 4H), 4.29-4.27 (d, J=6 Hz, 2H), 4.25-4.20 (t, J=6 Hz, IH), 3.47 (s, 2H), 2.56 (s, 3H).
PREPARATION EXAMPLE 2
(6S, 9aS) 2-allyl-6-(4-hydroxy-benzyl)-8-( 1 -methyl- 1 H-indazol-4-ylmethyl)-4,7- dioxo-hexahydro-pyrazino[2, 1 -c] [ 1 ,2,4]triazine- 1 -carboxylic acid benzylamide
Figure imgf000052_0002
To prepare the title compound, the General Scheme of Reverse-Turn Mimetic Library which is described in the above in this specification has been performed by the following scheme:
Figure imgf000053_0001
In the above scheme 'Pol' represents a bromoacetal resin (Advanced ChemTech) and detailed procedure is illustrated below.
Step 1 A bromoacetal resin (37mg, 0.98 mmol/g) and a solution of (1 -methyl- lH-indazol-4- yl)methanamine in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates. The reaction mixture was shaken at 600C using a rotating oven [Robbins Scientific] for 12 hours. The resin was washed with DMF, MeOH, and then DCM
Step 2 A solution of commercial available Fmoc-Tyr(OtBu)-OH (4 equiv.), PyBob (4 equiv.), HOAt (4 equiv.), and DIEA (12 equiv.) in DMF was added to the resin. After the reaction mixture was shaken for 12 hours at room temperature, the resin was washed with DMF, MeOH, and then DCM.
Step 3 To the resin swollen by DMF before reaction was added 25% piperidine in DMF and the reaction mixture was shaken for 30 min at room temperature. This deprotection step was repeated again and the resin was washed with DMF, Methanol, and then DCM. A solution of hydrazine acid (4 equiv.), HOBt (4 equiv.), and DIC (4 equiv.) in DMF was added to the resin and the reaction mixture was shaken for 12 hours at room temperature. The resin was washed with DMF, MeOH, and then DCM.
Step 4
The resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing. 1H NMR(CDCl3, 300 MHz) δ 8.08 (s, IH), 7.21-7.38 (m, 8H), 6.99 (d, J= 8.4 Hz), 6.89-6.94 (m, IH), 6.62-6.69 (m, 3H), 5.40-5.59 (m, 2H), 5.34 (t, J= 5.4 Hz, IH), 5.17-5.23 (m, IH), 5.07 (d, J= 10.5 Hz, IH), 4.67-4.96 (m, 2H), 4.26-4.45 (m, IH), 4.08 (s, 3H), 3.23-3.44 (m, 9H) PREPARATION EXAMPLE 3
Preparation of (6S, 9aS) 2-allyl-8-(3-cyclopropanecarbonyl-lH-indazol-7-ylmethyl)- 6-(4-hydroxy-benzyl)-4,7-dioxo-hexahydro-pyrazino[2, 1 -c][ 1 ,2,4]triazine- 1 -carboxylicacid benzylamide
metic by the
Figure imgf000054_0001
Figure imgf000054_0002
In the above scheme 'Pol' represents a bromoacetal resin (Advanced ChemTech) and detailed procedure is illustrated below.
Step 1
A bromoacetal resin (37mg, 0.98 mmol/g) and a solution of tert-butyl 7- (aminomethyl)-3-(cyclopropanecarbonyl)-lH-indazole-l-carboxylate in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates. The reaction mixture was shaken at 600C using a rotating oven [Robbins Scientific] for 12 hours. The resin was washed with DMF, MeOH, and then DCM
Step 2
A solution of commercial available Fmoc-Tyr(OtBu)-OH (4 equiv.), PyBob (4 equiv.), HOAt (4 equiv.), and DIEA (12 equiv.) in DMF was added to the resin. After the reaction mixture was shaken for 12 hours at room temperature, the resin was washed with DMF, MeOH, and then DCM.
Step 3
To the resin swollen by DMF before reaction was added 25% piperidine in DMF and the reaction mixture was shaken for 30 min at room temperature. This deprotection step was repeated again and the resin was washed with DMF, Methanol, and then DCM. A solution of hydrazine acid (4 equiv.), HOBt (4 equiv.), and DIC (4 equiv.) in DMF was added to the resin and the reaction mixture was shaken for 12 hours at room temperature. The resin was washed with DMF, MeOH, and then DCM.
Step 4
The resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing. 1H- NMR(300MHz, CDCl3) δ8.32~8.29(dd, J=2.0Hz , J=2.0Hz , IH) δ 7.34~7.14(m, 8H) δ 6.84(d, J=8.3Hz , 2H) δ 6.70(t, J=5.9Hz , IH) δ 6.49(d, J=8.4Hz , 2H) δ 5.60~5.49(m, IH) δ 5.34~5.24(m, 2H) δ 5.12(d, J=10.3Hz , 2H) δ 4.93(d, J=17.1Hz , IH) δ 4.42~4.25(m, 2H) δ 3.35(d, J=7.8Hz , 2H) δ 3.31~3.27(m, 2H) δ 3.25-3.17(m, 2H) δ 1.28-1.15(m, 3H) δ 1.04~0.97(m, 2H) H- acid
Figure imgf000055_0001
Library which is described in the above in this specification has been performed by the following scheme:
Figure imgf000055_0002
In the above scheme 'Pol' represents a bromoacetal resin (Advanced ChemTech) and detailed procedure is illustrated below. Step 1
A bromoacetal resin (37mg, 0.98 mmol/g) and a solution of 2-(7-(aminomethyl)-lH- indazol-l-yl)ethyl tert-butyl carbonate in DMSO (1.4mL) were placed in a Robbins block (FlexChem) having 96 well plates. The reaction mixture was shaken at 600C using a rotating oven [Robbins Scientific] for 12 hours. The resin was washed with DMF, MeOH, and then DCM
Step 2
A solution of commercial available Fmoc-Tyr(OtBu)-OH (4 equiv.), PyBob (4 equiv.), HOAt (4 equiv.), and DIEA (12 equiv.) in DMF was added to the resin. After the reaction mixture was shaken for 12 hours at room temperature, the resin was washed with DMF, MeOH, and then DCM.
Step 3
To the resin swollen by DMF before reaction was added 25% piperidine in DMF and the reaction mixture was shaken for 30 min at room temperature. This deprotection step was repeated again and the resin was washed with DMF, Methanol, and then DCM. A solution of hydrazine acid (4 equiv.), HOBt (4 equiv.), and DIC (4 equiv.) in DMF was added to the resin and the reaction mixture was shaken for 12 hours at room temperature. The resin was washed with DMF, MeOH, and then DCM.
Step 4 The resin obtained in Step 3 was treated with formic acid (1.2 mL each well) for 18 hours at room temperature. After the resin was removed by filtration, the filtrate was condensed under a reduced pressure using SpeedVac [SAVANT] to give the product as oil. The product was diluted with 50% water/acetonitrile and then lyophilized after freezing.
1H NMR(CDCl3, 300 MHz) δ 8.04 (s, IH), 7.70 (d, J= 7.8 Hz, IH), 7.21-7.38 (m, 5H), 6.99-7.12 (m, 5H), 6.66-6.69 (m, 3H), 5.44-5.55 (m, 3H), 5.35 (t, J= 5.1 Hz, IH), 4.90- 5.01 (m, 2H), 4.56-4.77 (m, 3H), 4.24-4.44 (m, 2H), 4.03-4.11 (m, 2H), 3.17-3.48 (m, 8H), 3.02 (t, J= 5.7 Hz, IH)
PREPARATION EXAMPLE 5 Preparation of Disodium 4-((2-allyl- 1 -(benzylcarbamoyl)-8-((2-methyl-2H-indazol-
7-yl)methyl)-4,7-dioxo-octahydro- 1 H-pyrazino[2, 1 -c] [ 1 ,2,4]triazin-6-yl)methyl)phenyl phosphate (2)
Figure imgf000057_0001
(V aq NaOH 87%
Figure imgf000057_0002
(3)
To a solution of 2-allyl-N-benzyl-6-(4-hydroxybenzyl)-8-((2-methyl-2H-indazol-7- yl)methyl)-4,7-dioxo-hexahydro-2H-pyrazino[2, 1 -c] [ 1 ,2,4]triazine- 1 (όH)-carboxamide (/) ( 1.0 eq.) in THF ( 1 OmL/mmol) was added POCl3 (4.0 eq.) and TEA (3.0 eq.) at O0C. After being stirred at room temperature for 1 hr, sat. aq. NaHCO3 solution was poured slowly and stirred for lhr. The resulting mixture was washed with EtOAc, and then the aqueous layer was acidified with IN aq. HCl solution at O 0C, and then extracted with EtOAc. The organic layer was dried with Na2SO4 and was concentrated in vacuo. The residue was crystallized with EtOAc and «-Hexane to give an intermediate compound (2) as white solid. The solid was adjusted with O. IN aq. NaOH solution to pH 1 1.0 and lyophilized to give the desired compound (3) (87%).
EXAMPLE 1
P450 CYP3A4 Inhibitory Activity Screening Test Compounds:
Compound A
Figure imgf000057_0003
Compound B
Compound C
Figure imgf000058_0001
Assay was conducted in a 200 μL volume in 96-well microtiter plates using cDNA- expressed human hepatic CYP3A4 (supersome, BD Gentest™ #456202). 7-Benzyloxy-4- trifluoromethyl-coumarin (BFC) was used as a substrate for CYP3A4. Test articles and substrate BFC were dissolved in 100% acetonitrile. The final volume of acetonitrile in the incubation mixture was less than 1% (volume/volume). Potassium phosphate buffer (pH 7.4, final concentration 0.1M), MgCl2 (final concentration 8.3mM), EDTA (final concentration 1.67mM), a test article stock solution, a CYP3A4 supersome and NADPH (final concentration 0.25 mM) were added to each well. The reaction was initiated by the addition of substrate (BFC, final concentration 30 M) after a 10 min pre-incubation at 37 °C . After 10 min incubation at 37 °C, the reaction was terminated by the addition of 75 μL of acetonitrile : 0.5 M Tris-base = 4 : 1 (volume/volume). Thereafter, Fluorescent signal was measured using a fiuorometer. BFC metabolite, 7-hydroxy-4-trifluoromethyl-coumarin, was measured using an excitation wavelength of 409 nm and an emission wavelength of 530 nm. Figure 2 shows IC50 of the test compound A of CYP3A4 inhibition assay. Compounds A, B, and C showed weak inhibition of a CYP3A4 enzyme. [Table 6]
IC50 values of Compounds A, B, and C against CYP3A4 activity
Test Compound IC50 (uM)
Compound A 1 1.6
Compound B 25.3
Compound C 12.9
EXAMPLE 2
TopFlash reporter gene Bioassay for the measurement of IC50 against SW480 cells The test compound (Compound D) used in this example was prepared in Preparation
Example 3.
Compound D
Figure imgf000058_0002
SW480 cells were transfected with the usage of Superfect™ transfect reagent (Qiagen, 301307). Cells were trypsinized briefly 1 day before transfection and plated on 6 well plate (5 x 105 cells/well) so that they were 50-80% confluent on the day of transfection.
Four microgram (TopFlash) and one microgram (pRL-null) of DNAs were diluted in 150 μl of serum-free medium, and 30 μl of Superfect™ transfect reagent was added. The DNA-Superfect mixture was incubated at room temperature for 15 min, and then, 1 ml of 10 % FBS DMEM was added to this complex for an additional 3 hours of incubation. While complexes were forming, cells were washed with PBS twice without antibiotics.
The DNA-Superfect™ transfect reagent complexes were applied to the cells before incubating at 37 °C at 5 % CO2 for 3 hours. After incubation, recovery medium with 10 % FBS was added to bring the final volume to 1.18 ml. After 3 hours incubation, the cells were harvested and reseeded to 96 well plate (3 x 104 cells/well). After overnight incubation at 37 °C at 5 % CO2, the cells were treated with Compound D for 24 hours. Finally, the activity was checked by means of luciferase assay (Promega, E 1960). Figure 3 illustrates the results of the measurement of IC50 of Compound D for SW480 cells. IC50 was 0.083 ±0.007 μM.
EXAMPLE 3
Cell Growth inhibition activity on AML cancer cells (Cell Growth Inhibition Assay)
Test Compounds:
Compound A
Compound C
Figure imgf000059_0001
Cell growth Inhibition assay was performed to investigate the rate of inhibition of cell proliferation by the test compounds. MV-4-1 1 (human, Acute Myeloid Leukemia cell line) cells were cultured in Iscove's modified Dulbecco's medium (IMDM) including 10% fetal bovine serum (FBS), Ix penicillin/streptomycin (10,000 units/ml Penicillin, 10,000 g/ml Streptomycin in 0.85% NaCl). MV-4-11 cells were harvested with IMDM medium and 5 x 104 cells / well were transferred to each well of 96 well culture plates (Nunc, #167008). The test compounds were treated with the serial dilution and duplicated for each concentration. For the serial dilution, the test compounds were repeatedly diluted with the same volume of media onto 96-well assay block (costar, #3956). After the dilution, each compound was added to each well. The background absorbance was also measured during the test compounds treatment by adding the IMDM media in replacement of test compound to the negative control plate. The plates were incubated for 3 days (72 hours) at 370C in the humidified incubator containing 5% CO2. On the last day, 20 μL of CellTiter 96 Aqueous One Solution (Promega #G3581) was added to the culture in each well and the plates were incubated for a few hours at 370C in the humidified incubator containing 5% CO2. After the incubation, the absorbance of each cell was measured at 490 nm using an EnVision
(Perkinelmer, USA). The GI50 values were calculated using a Prism 3.0 program. The results showed that the test compounds affected the cell proliferation and inhibited the growth of AML cancer cells. Figure 4 shows the result of the inhibition of Compound A. GI50 of Compound A and Compound C were 0.220 μM and 0.037 μM, respectively.
As described above, the present invention provides new compounds of revers-tum mimetics, which can be used as pharmaceutical compounds, especially on AML cancer cells. The invention has been described in detail with reference to preferred embodiments thereof. However, it will be appreciated by those skilled in the art that changes may be made in these embodiments without departing from the principles and spirit of the invention, the scope of which is defined in the appended claims and their equivalents.

Claims

CLAIMS 1. A compound having a structure of Formula (I):
Figure imgf000061_0001
as an isolated stereoisomer or a mixture of stereoisomers or as a pharmaceutically acceptable salt thereof, wherein:
E is -ZR3- or -(C=O)-, wherein Z is CH or N; W is -(C=O)-, -(C=O)NH-, -(C=O)O-, -(C=O)S-, -S(O)2- or a bond; Ri is indazolyl or substituted indazolyl; and each of R2, R3, R4 and R5 is the same or different and independently an amino acid side chain moiety or an amino acid side chain derivative.
2. The compound of claim 1, wherein:
Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from Ci-7alkyl, C6-i2aryl, C7_i5arylalkyl, substituted C7-i5arylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci-iOacyl, amino, halogen, nitro, C2~i0acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl, hydroxyalkyl, cyanoCi.3alkyl, morpholinylCi.3alkyl, alkoxyalkylamide and cycloalkylcarbonyl .
3. T he compound of claim 1 wherein ntly d
Figure imgf000061_0002
iCi^alkyl guanidino, amidino, C i^alkyl amidino, diCi^alkylamidino, Ci-salkylamino, diCi-5alkylamino, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino,
Figure imgf000061_0003
amidino,
Figure imgf000061_0004
Ci.salkylamino, diCi-5alkylamino, and hydroxyl; C 6-i2aryl or substituted C6-i2aryl having one or more substituents independently selected from: halogen, amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, C
Figure imgf000061_0005
i^alkylamidino, diCi^alkylamidino, Ci-5alkylamino, diCi.5alkyl amino, and hydroxyl; Ci-6alkoxy; diCi-salkylamino;
Cό-Bheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6-i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci^alkyl, Ci-6alkoxy, cyano, and hydroxyl; and
C7.i3arylalkyl or substituted C7-i3arylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci. 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci.6alkoxy, nitro, carboxy, cyano, sulfuryl, acetyl enyl and hydroxyl; and R3 is selected from the group consisting of: hydrogen;
Ci-nalkyl or substituted Ci-i2alkyl having one or more substituents independently selected from: halogen, cyano, Ci^alkoxy, amino, guanidino, C i^alkyl guanidino, d
Figure imgf000062_0001
iCi^alkyl guanidino, amidino, C i^alkyl amidino, diCi^alkylamidino, Ci-salkylamino, diCi.5alkylamino, and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino,
Figure imgf000062_0002
amidino,
Figure imgf000062_0003
diCi_4alkylamidino, Ci-5alkylamino, diCi-5alkylamino, and hydroxyl;
C 6-i2aryl or substituted C6-i2aryl having one or more substituents independently selected from: halogen, amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, C i-4alkyl amidino,
Figure imgf000062_0004
diCi^alkylamidino, C|.5alkylamino, diCi-salkylamino, and hydroxyl;
Ci-6alkoxy; Cό-πheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted Cό-πheterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, C|-6alkyl, Ci-6alkoxy, cyano, and hydroxyl; and
C7-i3arylalkyl or substituted C7-i3arylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, C^alkylamino, Q- 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci_6alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl.
4. The compound of claim 1 , wherein R2, R4 and R5 are independently selected from the group consisting of: aminoC2.5alkyl; guanidinoC2-5alkyl; CMalkylguanidinoC^alkyl, diQ. 4alkylguanidino-C2-5alkyl; amidinoCi-salkyl; Ci-4alkylamidinoC2-5alkyl; diC]. 4alkylamidinoC2-5alkyl; Ci-3alkoxy;
Ci-i2alkyl; C6-i2aryl; C6-i2arylalkyl; C2-i2alkenyl; phenyl or substituted phenyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino,
Figure imgf000062_0005
halogen, p
Figure imgf000062_0006
erfluoroCi^alkyl, Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; naphthyl or substituted naphthyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen,
Figure imgf000062_0008
Figure imgf000062_0007
Ci^alkyl, Ci^alkoxy, nitro, carboxy, cyano, sulfuryl, and hydroxyl; benzyl or substituted benzyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000062_0009
halogen, perfluoro Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl, acetyl en yl,
Figure imgf000062_0010
and hydroxyl; bisphenylmethyl or substituted bisphenylmethyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Ci. 4dialkylamino, halogen, perfluoro
Figure imgf000062_0011
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridyl or substituted pyridyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, d^dialkylamino, halogen, perfluoro
Figure imgf000062_0012
Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridylCi-4alkyl, or substituted
Figure imgf000063_0001
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Cj^alkylamino, Ci- 4dialkylamino, halogen, perfluoro
Figure imgf000063_0002
Ci^alkyl, Ci.3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyrimidylCMalkyl, or substituted
Figure imgf000063_0003
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino,
Figure imgf000063_0004
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; triazin-2-ylCi.4alkyl, or substituted triazin-2-ylCi.4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci.
4alkylamino,
Figure imgf000063_0005
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000063_0006
or substituted
Figure imgf000063_0007
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Cj. 4alkylamino,
Figure imgf000063_0008
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
N-amidinopiperazinyl-N-Co^alkyl, N-amidinopiperidinylCMalkyl; and
4-aminocyclohexylC0-2alkyl; and
R3 is selected from the group consisting of: hydrogen; aminoC2-5alkyl; guanidinoC2.5alkyl;
Figure imgf000063_0009
diCj.
4alkylguanidino-C2-5alkyl; amidinoC2-5alkyl; Ci.4alkylamidinoC2-5alkyl; diCi. 4alkylamidinoC2-5alkyl; C i -3alkoxy;
CM2alkyl; C6-i2aryl; C6-i2arylalkyl; C2-i2alkenyl; phenyl or substituted phenyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, halogen, p
Figure imgf000063_0010
erfluoroCi^alkyl, Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; naphthyl or substituted naphthyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen, perfluoroCi-4alkyl,
Figure imgf000063_0011
Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl, and hydroxyl; benzyl or substituted benzyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Ci^dialkylamino, halogen, perfluoro
Figure imgf000063_0012
Ci^alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; bisphenylmethyl or substituted bisphenylmethyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, C|. 4dialkylamino, halogen, perfluoro Ci-4alkyl,
Figure imgf000063_0013
nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridyl or substituted pyridyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci-4dialkylamino, halogen, perfluoro Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; pyridylCM
Figure imgf000063_0014
alkyl, or substituted pyridylCi^alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Q- 4dialkylamino, halogen, perfluoro Ci-4alkyl,
Figure imgf000063_0015
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000063_0017
or substituted
Figure imgf000063_0016
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, C|. 4alkylamino,
Figure imgf000063_0018
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; triazin-2-ylCi-4alkyl, or substituted triazin-2-ylCi.4alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino, Ci^dialkylamino, halogen, perfluoro Ci-4alkyl, C^alkyl, Ci.3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000064_0001
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, C\. 4alkylamino,
Figure imgf000064_0002
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000064_0003
4-aminocyclohexylCo.2alkyl.
5. The compound of claim 2, wherein:
Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted Cγ.isarylalkyl having one or more substituents independently selected from amino and nitro. 6. The compound of claim 1 wherein Ri is selected from the group consisting of 2- methyl-2H-indazolyl, 1 -methyl- lH-indazolyl, S-cyclopropylcarbonyl-l H-indazolyl, 1- hydroxyethyl-lH-indazolyl, lH-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-lH- indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro-lH-indazolyl,
6-chloro-lH-indazolyl, 3-phenyl- 1 H-indazolyl, 1 -benzyl-3 -phenyl- 1 H-indazolyl, 1-nitrobenzyl-l H-indazolyl, 1-aminobenzyl- 1 H-indazolyl, 2-methyl-3-cyclopropylcarbonyl-2H-indazolyl, l-methyl-3-aminocarbonyl- 1 H-indazolyl, carbonyl-indazolyl , 2-isopropyl-2H-indazolyl, 2-aminocarbonylmethyl-2H- indazolyl, l-cyanomethyl-3-cyclopropylcarbonyl-l H-indazolyl, 2-cyanomethyl-3- cyclopropylcarbonyl-2H-indazolyl, 1 -moφholinyl-N-ethyl- 1 H-indazolyl, 2-morpholinyl-N- ethyl-2H-indazolyl, 2-dimethylaminocarbonylmethyl-2H-indazolyl, 2- methoxyethylpropionamide-2H-indazolyl, 1 -ethoxycarbonylmethyl- 1 H-indazolyl, 2- ethoxycarbonylmethyl-2H-indazolyl and 1 -acetoxyethyl- 1 H-indazolyl.
7. T he compound of claim 1 wherein
R2, R4 and R5 are independently selected from the group consisting of: Ci_i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from acyl, carboxy, alkylthio, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl, cyano, Ci.salkylamino, did-salkylamino, hydroxyl, Ci-6alkoxy, and phenylsulfonyl;
Ci- .
Figure imgf000064_0004
phenylsulfonyl, moφhorlinylCi-3alkoxy, TV-formamidyl, and pyrrolidonyl; heterocyclyl or substituted heterocyclyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Ci. 4dialkylamino, halogen, perfluoro Ci^alkyl, Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl;
Figure imgf000065_0001
or substituted
Figure imgf000065_0002
having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci. 4alkylamino,
Figure imgf000065_0003
halogen, perfluoroCMalkyl,
Figure imgf000065_0004
Cj. 3alkoxy, nitro, carboxy, cyano, sulfuryl, hydroxyl, Ci.6alkyloxyCi.6acyl, morphorlinylCi. όalkyl, arylalkyl, aryl, heterocyclyl, acyl, phenylsulfonyl, cycloalkylalkyl, acyloxyalkyl, aminocarbonyl and
Figure imgf000065_0005
cycloalkyl or substituted cycloalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci^dialkylamino, halogen, perfluoro
Figure imgf000065_0006
Ci^alkyl, Ci^alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; and cycloalkylalkyl or substituted cycloalkylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Ci- 4dialkylamino, halogen, perfluoro
Figure imgf000065_0007
nitro, carboxy, cyano, sulfuryl and hydroxyl; and
R3 is selected from the group consisting of: hydrogen;
Ci.i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from acyl, carboxy, alkylthio, and phenylsulfonyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from acyl, carboxy, alkylthio, and phenylsulfonyl; substituted C6-i2aryl substituted with amidosulfonate; arylCi^alkyl or substituted arylC^alkyl having one or more substituents independ
Figure imgf000065_0008
ently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino,
Figure imgf000065_0009
C].6alkyl, Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl, hydroxyl, Ci-όalkyloxyCi-όacyl, morphorlinylCi -6alkyl, aryl, aryloxy, (alkyl)(arylalkyl)amino, heterocyclyl, acyl, amidosulfonate, aminocarbonyl, alkylsulfonate, alkylsulfonyl, alkylthio, arylthio, phenylsulfonate, phenylsulfonyl, moφhorlinylCi-3alkoxy, N-formamidyl, and pyrrolidonyl; heterocyclyl or substituted heterocyclyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4 alkylamino, Ci- 4dialkylamino, halogen, perfluoro
Figure imgf000065_0010
nitro, carboxy, cyano, sulfuryl and hydroxyl; heterocyclylC i-4alkyl or substituted heterocyclylCi^alkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci- 4alkylamino, Ci^dialkylamino, C3-6cycloalkyl, halogen, perfluoroCi^alkyl,
Figure imgf000065_0011
C). 3alkoxy, n
Figure imgf000065_0012
itro, carboxy, cyano, sulfuryl, hydroxyl, Ci^alkyloxyCi^acyl, morphorlinylCi. 6alkyl, arylalkyl, aryl, heterocyclyl, acyl, phenylsulfonyl, cycloalkylalkyl, acyloxyalkyl, aminocarbonyl and Ci-4alkylformamidyl; cycloalkyl or substituted cycloalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino,
Figure imgf000065_0013
halogen, perfluoro
Figure imgf000065_0014
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl; and cycloalkylalkyl or substituted cycloalkylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci-4alkylamino, Ci. 4dialkylamino, halogen, perfluoro
Figure imgf000066_0001
Ci-3alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl.
8. T he compound of claim 7, wherein:
Figure imgf000066_0002
benzimidazolylC i ^alkyl, or indolylC i ^alkyl .
9. The compound of claim 1 wherein E is CHR3 and the compound has a structure of Formula (II):
Figure imgf000066_0003
° * (i.) wherein:
W is -(C=O)-, -(C=O)NH-, -(C=O)O-, -(C=O)S-, -S(O)2- or a bond;
Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from C1.7a.kyl, C6-i2aryl, C7-|5arylalkyl, substituted C7-i5arylalkyl, cycloalkylalkyl, hydroxyalkyl, Ci-toacyl, amino, halogen, nitro, C2~i0acyloxyalkyl, aminocarbonyl, aminocarbonylalkyl, dialkylaminocarbonylalkyl, alkoxycarbonylalkyl, hydroxyalkyl, cyanoCi-3alkyl, moφholinylCi.3alkyl, alkoxyalkylamide and cycloalkylcarbonyl;
R2, R4 and R5 are independently selected from the group consisting of:
Ci-i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from: halogen, cyano, Ci-6alkoxy, amino, guanidino,
Figure imgf000066_0004
Figure imgf000066_0006
amidino,
Figure imgf000066_0005
Ci-salkylamino, diCi.5alkylamino, aminocarbonyl, morpholinyl, methyl-piperazinyl, phenyl and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino, C i^alkyl guanidino, diCi-4alkylguanidino, amidino, C i^alkyl amidino, diCi^alkylamidino, Ci-salkylamino, diCi-salkylamino, and hydroxyl;
C6-i2aryl or substituted C6-i2aryl having one or more substituents independently selected from: halogen, amino, guanidino, C i^alkyl guanidino, diCi^alkyl guanidino, amidino, Ci-4alkylamidino,
Figure imgf000066_0007
diCi^alkylamidino, Ci-salkylamino, diCi-5alkylamino, and hydroxyl; Ci.6alkoxy; diCi.salkylamino;
Cό-πheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6-i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci-6alkyl, Cj-6alkoxy, cyano, and hydroxyl; and
Figure imgf000067_0001
Ci- 4dialkylamino, halogen, perfluoro Ci^alkyl, Ci-6alkoxy, nitro, carboxy, cyano, sulfuryl, acetylenyl, hydroxy!, phosphate, dimethylaminoacetate, dimethylaminoalkylcarbamate, and diethyl-phosphono-acetamido; and
R3 is selected from the group consisting of: hydrogen;
Ci.i2alkyl or substituted Ci-i2alkyl having one or more substituents independently selected from: halogen, cyano,
Figure imgf000067_0002
amino, guanidino,
Figure imgf000067_0003
Figure imgf000067_0005
amidino,
Figure imgf000067_0004
Ci-5alkylamino, diCi.5alkylamino, and hydroxyl;
C2-i2alkenyl or substituted C2-i2alkenyl having one or more substituents independently selected from: amino, guanidino,
Figure imgf000067_0006
amidino, Ci_4alkylamidino, diCi-4alkylamidino, Ci-salkylamino, diCi-salkylamino, and hydroxyl;
C6-i2aryl or substituted C6.i2aryl having one or more substituents independently selected from: halogen, amino, guanidino, C^alkylguanidino, diCi^alkyl guanidino, amidino, CMalkylamidino,
Figure imgf000067_0007
diCi^alkylamidino, Ci-salkylamino, diCi-salkylamino, and hydroxyl;
Ci-6alkoxy; Q.πheterocyclylalkyl, which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur, or substituted C6-i3heterocyclylalkyl which has 1 to 2 heteroatoms selected from nitrogen, oxygen or sulfur and has one or more substituents independently selected from: halogen, Ci-6alkyl, Ci-6alkoxy, cyano, and hydroxyl; and
C7-i3arylalkyl or substituted C7-i3arylalkyl having one or more substituents independently selected from: amino, amidino, guanidino, hydrazino, Ci^alkylamino, Ci- 4dialkylamino, halogen, perfluoro Ci-6alkyl, Ci-6alkoxy, nitro, carboxy, cyano, sulfuryl and hydroxyl.
10. The compound of claim 9, wherein Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7-i5arylalkyl having one or more substituents independently selected from amino and nitro.
1 1. The compound of claim 9, wherein
Ri is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- IH- indazolyl, S-cyclopropylcarbonyl-l H-indazolyl, 1 -hydroxyethyl- lH-indazolyl, lH-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-lH-indazolyl, 1 -benzyl- lH-indazolyl, 3-chloro- 1 H-indazolyl, 6-chloro-l H-indazolyl, 3-phenyl-lH-indazolyl, 1 -benzyl-3 -phenyl- IH- indazolyl, 1-nitrobenzyl-l H-indazolyl, 1-aminobenzyl-l H-indazolyl, 2-methyl-3- cyclopropylcarbonyl-2H-indazolyl, l-methyl-3-aminocarbonyl-lH-indazolyl, carbonyl- indazolyl , 2-isopropyl-2H-indazolyl, 2-aminocarbonylmethyl-2H-indazolyl, 1-cyanomethyl- S-cyclopropylcarbonyl- 1 H-indazolyl, 2-cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1 -morpholinyl-N-ethyl- 1 H-indazolyl, 2-moφholinyl-N-ethyl-2H-indazolyl, 2- dimethylaminocarbonylmethyl-2H-indazolyl, 2-methoxyethylpropionamide-2H-indazolyl, 1 - ethoxycarbonylmethyl-lH-indazolyl, 2-ethoxycarbonylmethyl-2H-indazolyl and 1- acetoxyethyl- 1 H-indazolyl ;
R2 and R5 is independently C6-i2aryl, C7-i2arylalkyl, C6- i jheterocyclylalkyl, hydroxybenzyl or substituted benzyl having a substituents selected from phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, and diethyl- phosphono-acetamido;
R3 is hydrogen or Ci.i2alkyl; and
R4 is Ci-i2alkyl, C7-i2arylalkyl, or C2-i2alkenyl.
12. The compound of claim 9 wherein the compound has the structure of Formula (III):
Figure imgf000068_0001
wherein:
Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinyl ethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7.i5arylalkyl having one or more substituents independently selected from amino and nitro;
R4 is
Figure imgf000068_0002
Ci-6alkoxy, C2.6alkenyl or perfluoroCi.6alkyl;
R6 is C6-i2aryl or substituted C6-i2aryl having one or more substituents independently selected from the group consisting of: halogen, hydroxyl, cyano, Ci-6alkyl, acetylenyl and Ci-6alkoxy; or C5.i2heterocyclyl or substituted C5.i2heterocyclyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci^alkyl, and Ci-6alkoxy;
Xi is hydrogen, hydroxyl or halogen; and each of X2 and X3 is independently hydrogen, hydroxyl, phosphate, dimethylaminoacetate, (2-dimethylamino-ethyl)-carbamate, diethyl-phosphono-acetamido or halogen.
13. The compound of claim 12 wherein:
Ri is selected from the group consisting of 2-methyl-2H-indazolyl, 1-methyl-lH- indazolyl, 3-cyclopropylcarbonyl-l H-indazolyl, 1 -hydroxyethyl- 1 H-indazolyl, 1 H-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-lH-indazolyl, 1 -benzyl- 1 H-indazolyl, 3-chloro- 1 H-indazolyl, 6-chloro-l H-indazolyl, 3-phenyl-l H-indazolyl, l-benzyl-3-phenyl-lH- indazolyl, 1 -nitrobenzyl- 1 H-indazolyl, 1-aminobenzyl-l H-indazolyl, 2-methyl-3- cyclopropylcarbonyl-2H-indazolyl, l-methyl-3-aminocarbonyl-l H-indazolyl, carbonyl- indazolyl , 2-isopropyl-2H-indazolyl, 2-aminocarbonylmethyl-2H-indazolyl, 1 -cyanomethyl- 3-cyclopropylcarbonyl-lH-indazolyl, 2-cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1 -morpholinyl-N-ethyl- 1 H-indazolyl, 2-morpholinyl-N-ethyl-2H-indazolyl, 2- dimethylaminocarbonylmethyl-2H-indazolyl, 2-methoxyethylpropionamide-2H-indazolyl, 1 - ethoxycarbonylmethyl-1 H-indazolyl, 2-ethoxycarbonylmethyl-2H-indazolyl and 1- acetoxyethyl-1 H-indazolyl;
R4 is Cioalkyl or allyl; and
R6 is phenyl or substituted phenyl having one or more substituents independently selected from: halogen, hydroxyl, cyano,
Figure imgf000069_0001
acetylenyl and
Figure imgf000069_0002
or pyridyl or substituted pyridyl having one or more substituents independently selected from: halogen, hydroxyl, cyano,
Figure imgf000069_0003
and Ci-6alkoxy.
14. A compound having a structure of Formula (IV):
(HI)-R7 ( IV) wherein (III) is:
Figure imgf000069_0004
one of Ri, R4, R6, Xi, X2, and X3 is linked to R7 via Y, wherein Y is an oxygen, sulfur, or nitrogen in R], R4, or R6, or an oxygen in Xi, X2, or X3, and R7 is hydroxyalkyl, glycosyl, phosphoryloxymethyloxycarbonyl, substituted or unsubstituted piperidine carbonyloxy, or a salt thereof; or
Y-R7 is an amino acid residue, a combination of amino acid residues, phosphate, hemimalate, hemisuccinate, dimethylaminoalkylcarbamate, dimethylaminoacetate, or a salt thereof; and when not linked to R7,
Ri is indazolyl or substituted indazolyl having one or more substituents independently selected from methyl; isopropyl; cyclopropylmethyl; hydroxyethyl; cyclopropylcarbonyl; aminocarbonyl; cyanomethyl; morpholinylethyl; aminocarbonylmethyl; dimethylaminocarbonylmethyl; methoxyethylpropionamide; ethoxycarbonylmethyl; acetoxyethyl; phenyl; benzyl; and substituted C7-i5arylalkyl having one or more substituents independently selected from amino and nitro; R4 is Ci-6alkyl, Ci.6alkoxy, C2-6alkenyl or perfluoroCi^alkyl; R6 is C6-i2aryl or substituted C6-i2aryl having one or more substituents independently selected from the group consisting of: halogen, hydroxyl, cyano, Ci-6alkyl, acetylenyl and Ci-6alkoxy; or C5.|2heterocyclyl or substituted C5.i2heterocyclyl having one or more substituents independently selected from: halogen, hydroxyl, cyano,
Figure imgf000069_0005
and Ci-6alkoxy; and each of Xi, X2 and X3 is independently hydrogen, hydroxyl or halogen.
15. The compound of claim 14 wherein:
Ri is selected from the group consisting of 2-methyl-2H-indazolyl, 1 -methyl- IH- indazolyl, 3-cyclopropylcarbonyl-lH-indazolyl, 1-hydroxyethyl-lH-indazolyl, lH-indazolyl, 2-cyclopropylmethyl-2H-indazolyl, 3-amino-lH-indazolyl, 1 -benzyl- lH-indazolyl, 3-chloro- 1 H-indazolyl, 6-chloro-l H-indazolyl, 3-phenyl-lH-indazolyl, l-benzyl-3-phenyl-lH- indazolyl, 1-nitrobenzyl-l H-indazolyl, 1-aminobenzyl-l H-indazolyl, 2-methyl-3- cyclopropylcarbonyl-2H-indazolyl, l-methyl-3-aminocarbonyl-l H-indazolyl, carbonyl- indazolyl , 2-isopropyl-2H-indazolyl, 2-aminocarbonylmethyl-2H-indazolyl, 1 -cyanomethyl- S-cyclopropylcarbonyl-l H-indazolyl, 2-cyanomethyl-3-cyclopropylcarbonyl-2H-indazolyl, 1-morpholinyl-N-ethyl-l H-indazolyl, 2-moφholinyl-N-ethyl-2H-indazolyl, 2- dimethylaminocarbonylmethyl-2H-indazolyl, 2-methoxyethylpropionamide-2H-indazolyl, 1 - ethoxycarbonylmethyl-1 H-indazolyl, 2-ethoxycarbonylmethyl-2H-indazolyl and 1- acetoxyethyl- 1 H-indazolyl; R4 is Ci^alkyl or allyl; and
RO is phenyl or substituted phenyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci.6alkyl, acetylenyl and Ci^alkoxy; or pyridyl or substituted pyridyl having one or more substituents independently selected from: halogen, hydroxyl, cyano, Ci.6alkyl and Ci.6alkoxy.
16. A use of the compound according to any one of claims 1 to 15, for the preparation of a medicament for treating or preventing an acute myeloid leukemia.
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EP2212329B1 (en) 2014-07-30
WO2009051398A2 (en) 2009-04-23
RU2010119447A (en) 2011-11-27
EP2212330A4 (en) 2011-11-30
KR101269420B1 (en) 2013-05-30
ES2541459T3 (en) 2015-07-20
US20100240662A1 (en) 2010-09-23
CA2701735C (en) 2012-12-11
MX2010004046A (en) 2010-06-25
CN101827850A (en) 2010-09-08
JP5400785B2 (en) 2014-01-29
ES2509042T3 (en) 2014-10-16
CN101827849B (en) 2013-07-24
WO2009051398A3 (en) 2009-06-04
EP2212328B1 (en) 2017-01-25
JP5222949B2 (en) 2013-06-26
CN101896485A (en) 2010-11-24
AU2008312193A1 (en) 2009-04-23
US8049008B2 (en) 2011-11-01
KR20100099116A (en) 2010-09-10
BRPI0818511A2 (en) 2015-06-16
MX2010004045A (en) 2010-07-06
KR20100085102A (en) 2010-07-28
WO2009051397A3 (en) 2009-06-04
AU2008312191B2 (en) 2012-07-05
KR101542921B1 (en) 2015-08-11
WO2009051397A9 (en) 2010-05-27
RU2010119468A (en) 2011-11-27
JP2011500668A (en) 2011-01-06
CN101827850B (en) 2014-03-12
RU2457210C2 (en) 2012-07-27
JP5222948B2 (en) 2013-06-26
EP2212329A2 (en) 2010-08-04

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