WO2008130248A1 - Improvements in and relating to oil production plants - Google Patents

Improvements in and relating to oil production plants Download PDF

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Publication number
WO2008130248A1
WO2008130248A1 PCT/NZ2008/000085 NZ2008000085W WO2008130248A1 WO 2008130248 A1 WO2008130248 A1 WO 2008130248A1 NZ 2008000085 W NZ2008000085 W NZ 2008000085W WO 2008130248 A1 WO2008130248 A1 WO 2008130248A1
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Prior art keywords
oleosin
plant
polyoleosin
tag
construct
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PCT/NZ2008/000085
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French (fr)
Inventor
Ruth Jocelyn Cookson
Nicholas John Roberts
Richard William Scott
Somrutai Winichayakul
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Agresearch Limited
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Publication of WO2008130248A1 publication Critical patent/WO2008130248A1/en

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8247Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving modified lipid metabolism, e.g. seed oil composition
    • AHUMAN NECESSITIES
    • A23FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23KFODDER
    • A23K10/00Animal feeding-stuffs
    • A23K10/30Animal feeding-stuffs from material of plant origin, e.g. roots, seeds or hay; from material of fungal origin, e.g. mushrooms
    • AHUMAN NECESSITIES
    • A23FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23KFODDER
    • A23K50/00Feeding-stuffs specially adapted for particular animals
    • A23K50/10Feeding-stuffs specially adapted for particular animals for ruminants
    • CCHEMISTRY; METALLURGY
    • C11ANIMAL OR VEGETABLE OILS, FATS, FATTY SUBSTANCES OR WAXES; FATTY ACIDS THEREFROM; DETERGENTS; CANDLES
    • C11BPRODUCING, e.g. BY PRESSING RAW MATERIALS OR BY EXTRACTION FROM WASTE MATERIALS, REFINING OR PRESERVING FATS, FATTY SUBSTANCES, e.g. LANOLIN, FATTY OILS OR WAXES; ESSENTIAL OILS; PERFUMES
    • C11B1/00Production of fats or fatty oils from raw materials
    • C11B1/10Production of fats or fatty oils from raw materials by extracting

Definitions

  • the invention relates to improvements in and relating to oil production in plants and seeds.
  • this invention relates to methods, including the use of constructs for increasing the ratio of oleosin/polyoleosin to triacylglycerol (TAG) in the seeds of a plant and the ratio of oleosin/polyoleosin to TAG in the vegetative portions of a plant.
  • TAG triacylglycerol
  • the invention also relates to methods for selecting plants capable of generating new varieties which have increased oleosin/polyoleosin content or a high oleosin/polyoleosin relative to TAG ratio.
  • the invention also relates to methods for generating plants, or plant cells which have increased oleosin/polyoleosin content or a high oleosin/polyoleosin relative to TAG ratio.
  • TAG triacylglycerol
  • TAG biosynthesis The only committed step in TAG biosynthesis is the last one, i.e. the addition of a third fatty acid to an existing diacylglycerol, thus generating TAG.
  • this step is predominantly (but not exclusively) performed by one of three TAG synthesising enzymes including: acyl CoA: diacylglycerol acyltransferase (DGAT1); an unrelated acyl CoA: diacylglycerol acyl transferase (DGAT2); and phosphatidylcholine-sterol O-acyltransferase (PDAT).
  • acyl CoA diacylglycerol acyltransferase
  • PDAT phosphatidylcholine-sterol O-acyltransferase
  • Oleosins are specific plant proteins usually found only in seeds and pollen. Their function is to stop oil bodies coalescing during seed and pollen maturation. In nature, TAG produced in seeds and pollen form micelles encapsulated by a spherical phospholipid monolayer embedded with one or several species of oleosin proteins. Including caoleosin (calcium binding) and steroleosin (sterol binding) (Tzen et al., 2003) Oil bodies in fruit tissues (such as olives and avocados) do not contain oleosins.
  • the protein sequence can be divided almost equally along its length into 4 parts which correspond to a N-terminal hydrophilic region, two centre hydrophobic regions Goined by a proline knot or knob) and a C-terminal hydrophilic region.
  • the topology of oleosin is attributed to its physical properties which includes a folded hydrophobic core flanked by hydrophilic domains. This arrangement confers an amphipathic nature to oleosin resulting in the hydrophobic domain being embedded in the phospholipid monolayer (Tzen et al., 1992) while the flanking hydrophilic domains are exposed to the aqueous environment of the cytoplasm.
  • Polyoleosin is the head to tail fusion of two or more oleosin units (Roberts et al., 2008). Altering the number of oleosin units enables the properties (thermal stability and degradation rate) of the oil bodies to be tailored. Expression of polyoeosin in planta leads to incorporation of the polyoleosin units to the oil bodies as per single oleosin units (Scott et al., 2007). Oil Bodies
  • An oil body that is produced in seed or pollen consists of a droplet of TAG surrounded by a monolayer of phospholipid which is in turn surrounded by a layer of oleosi ⁇ proteins.
  • the hydrophobic acyl moiteies of the phospholipids interact with the encapsulated TAG and the hydrophilic head groups face the cytoplasm and the oleosins are orientated with their central hydrophobic amino acid domains protruding through the phospholipid monolayer and into the TAG core of the oil body.
  • Oil bodies are naturally produced in the seeds and pollen of many plants. Oil bodies can also be generated artificially by combining oleosins, triacylglycerides and phospholipids (Peng et al., 2004).
  • the size and number of oil bodies depends on the ratio of oleosin/polyoleosin to TAG within the plant cell (Siloto et al., 2006).
  • lipid profile of ruminant animal feed in turn influences the lipid profile of meat and dairy products (Demeyer and Doreau, 1999).
  • Different plants have different lipid profiles; by selectively feeding animals only plants with the desired lipid profile it is possible to positively influence the lipid profile of downstream meat and dairy products.
  • the final lipid make up of the meat and milk is not only influenced by the dietary lipids but is also heavily influenced by biohydrogenation (Jenkins and McGuire 2006; Firkins et al., 2006; Lock and Bauman, 2004).
  • Biohydrogenation is the hydrogenation of non-reduced compounds (such as unsaturated fats) by the biota present in the rumen. Biohydrogenation can be prevented/delayed by encapsulating the lipids in a protein or proteins that provide resistance to microbial degradation (Jenkins and Bridges 2007). '
  • oil bodies with an oleosin/polyoleosin outer layer can protect, or at least delay, degradation and/or biohydrogenation, of TAG, within the stomach and/or rumen of an animal, allowing the intact individual lipids from the TAG to be absorbed by the animal in the intestine. Therefore, it would be useful in terms of dietary intake of an animal if there could be provided a means for increasing the oleosin/polyoleosin content within seeds so as to increase the .. protection provided to the oil bodies.
  • plants could be produced which contain oleosin/polyoleosin in their vegetative portions in addition to the seeds of said plants. These plants or their genetic sequences could then be used to develop plants which have oleosin/polyoleosin and TAG produced in the vegetative portions of a plant which would be useful in terms of dietary intake.
  • a construct which includes:
  • nucleic acid molecule encoding an oleosin/polyoleosin protein
  • At least one nucleic acid molecule encoding an triacylglycerol biosynthetic enzyme (TAG synthesising enzyme);
  • promoter(s) are operatively linked to the nucleic acid molecules so as to cause expression of oleosin/polyoleosin and at least one TAG synthesising enzyme.
  • the TAG synthesising enzymes may be any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant and plant cell.
  • the enzymes may preferably be; acyl CoA : diacylglycerol acyltransferase (DGAT1); acyl CoA : diacylglycerol acyl transferase (DGAT2); or phospholipid : diacylglycerol acyltransferase (PDAT).
  • TAG synthesising enzyme there may be at least one TAG synthesising enzyme within the construct.
  • the oleosin/polyoleosin gene and/or the TAG synthesising enzymes may come from a number of plant species.
  • the plant species may be either monocots, dicots or gymnosperms.
  • monocots include; grasses from the genera Lolium, Festuca, Paspalum,
  • Pennisetum, Panicum and other forage and turfgrasses corn, rice, sugarcane, oat, wheat and barley.
  • dicotyledons include: Arabidopsis, tobacco, soybean, canola, cotton, potato, chickpea, medics, white clover, red clover, subterranean clover, alfalfa, eucalyptus, poplar, hybrid aspen, and gymnosperms, for example, pine tree.
  • the nucleic acid molecule encoding an oleosin or polyoleosin protein may have a nucleotide sequence selected from: a) SEQ ID NO's 1, 3, 5, 7 or 9, or other nucleic acid molecules encoding an oleosin gene;
  • the nucleic acid molecule encoding a TAG synthesising enzyme may have a nucleotide sequence selected from:
  • a use of at least one construct substantially as described above to produce oleosin/polyoleosin and TAG synthesising enzymes in the vegetative portions of a plant According to a forth aspect of the present invention there is provided a method of increasing the ratio of oleosin/polyoleosin to triacylglycerol (TAG) within a plant seed comprising a step of manipulating the genome of a plant such that the seeds of said plant express more oleosin/polyoleosin than a corresponding wild-type seed.
  • TAG triacylglycerol
  • a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant comprising the step of manipulating the genome of a plant so as to express more oleosin/polyoleosin and TAG synthesising enzyme in the vegetative portions than a corresponding wild-type plant.
  • a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant including the steps of:
  • a further step (c) which is the step of: measuring oleosin/polyoleosin and TAG in manipulated plants to find plants with a higher oleosin/polyoleosin to TAG ratio in the vegetative portion of the plant.
  • a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant including the steps of:
  • step (c) is the step of: measuring the levels of:
  • the first plant produces sufficient levels of oleosin/polyoleosin relative to the amount of TAG synthesising enzyme produced in the second plant to produce oil bodies encapsulating TAG which are capable of protecting and/or delaying degradation or biohydrogenation of the TAG within the stomach or rumen of an animal.
  • a further step (d) which is the step of: crossing the first and second plants to produce a plant expressing oleosin/polyoleosin and TAG synthesising enzyme.
  • the TAG synthesising enzymes may be any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant and plant cell.
  • the enzymes may be selected from one of the following; acyl CoA: diacylglycerol acyltransferase (DGAT1); acyl CoA: diacylglycerol acyl transferase (DGAT2); or phospholipid: diacylglycerol acyltransferase (PDAT).
  • TAG synthesising enzyme there may be at least one TAG synthesising enzyme within the construct. However, in some other embodiments, there may be more than one enzyme present within the construct.
  • the term 'vegetative portions' of the plant can include; the shoots, leaves, fruit, bark, pods, roots, nodules, stems and the like, including parts thereof.
  • the vegetative portions of the plant may be the leaves.
  • a seed of a plant which has been manipulated to express more oleosin/polyoleosin than a corresponding wild-type seed.
  • a plant or part thereof which has been manipulated to express more oleosin/polyoleosin. than a corresponding wild-type plant or part thereof.
  • a plant cell which has been manipulated to produce more oleosin/polyoleosin than a corresponding wild-type plant cell.
  • a leaf of a plant which expresses oleosin/polyoleosin and a TAG synthesising enzyme.
  • a plant or part thereof which has been manipulated to express both oleosin/polyoleosin and a TAG synthesising enzyme.
  • a plant or part thereof which has been manipulated to produce both oleosin/polyoleosin and TAG synthesising enzyme.
  • an animal feed which includes seeds and/or vegetative portions of plants, which have been manipulated to have elevated levels of oleosin/polyoleosin and/or TAG ..compared to the corresponding wild type seed or plant.
  • oleosin/polyoleosin to TAG in said animal feed.
  • an animal feed which includes seeds which have been manipulated to have elevated oleosin/polyoleosin content compared to the corresponding wild type seeds.
  • an animal feed which includes a vegetative portion of a plant which has been manipulated to have elevated oleosin/polyoleosin to TAG content compared to the vegetative portion of a corresponding wild type plant.
  • an animal feed which includes a seed and vegetative portion of a plant wherein the collective ratio of oleosin/polyoleosin to TAG is capable of protecting oil bodies in the rumen of an animal.
  • a plant or plant cell which has been transformed with a construct which includes:
  • said promoter is operatively linked to said nucleic acid molecule so as to cause expression of said TAG synthesising enzyme.
  • RNA molecule obtained from TAG synthesising enzyme nucleic acid molecule to reduce TAG levels with a cell or in planta.
  • the selection process involves identifying plants or seeds which have a high oleosin/polyoleosin content and/or a low TAG content.
  • the generation of new plants can be by either molecular genetic techniques or by traditional selection breeding techniques.
  • a plant or plant cell which produces more or less TAG than a corresponding wild-type plant or cell.
  • the manipulation of the genome may in some preferred embodiments be undertaken by molecular genetic techniques.
  • the manipulation of the genome may be undertaken using traditional selective breeding techniques.
  • nucleotide sequence information for TAG synthesising enzyme to generate plantibodies or other molecules which can inhibit the plant metabolic pathways which are involved in the synthesis of TAG synthesising enzyme. It should be appreciated that the generation of plantibodies is well known in the art, (refer Jobling SA et al 2003).
  • construct refers to an artificially assembled or isolated nucleic acid molecule which includes the gene or nucleic acid molecule of interest.
  • a construct may include the gene or genes of interest and appropriate regulatory sequences. It should be appreciated that the inclusion of regulatory sequences in a construct is optional for example, such sequences may not be required in situations where the regulatory sequences of a host cell are to be used.
  • construct includes vectors but should not be seen as being limited thereto.
  • wild type' or grammatical variations thereof refers to the genome of a plant and/or seed as found in nature.
  • seed' may refer to the seed as a whole or a cell within the seed.
  • vector' as used herein encompasses both cloning and expression vectors. Vectors are often recombinant molecules containing nucleic acid molecules from several sources.
  • the cloning vector selected may depend on the host and host cell as used. In general the vector may:
  • Suitable vectors may include:
  • an "expression vector” refers to a cloning vector which also contains the necessary regulatory sequences to allow for transcription and translation of the integrated gene of interest, so that the gene product of the gene can be expressed.
  • promoter refers to a sequence of DNA to which RNA polymerase (an enzyme) will bind and initiate transcription of a nucleic acid molecule of interest (a gene) to produce mRNA.
  • a promoter may be a plant promoter.
  • the plant promoter may be any suitable promoter for the plant of interest and which operates within (i.e. the promoter) the portion of the plant that expression is required in.
  • a seed specific promoter, or a vegetative specific promoter may be used dependent on where you want expression to occur.
  • the promoter molecule may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single- or doublestranded.
  • the promoter molecule may also optionally comprise one or more synthetic, non-natural or altered nucleotide bases, or combinations thereof.
  • 'antisense' includes a nucleic acid molecule which has a nucleotide sequence which can bind (i.e. is complementary) to a TAG synthesising enzyme RNA molecule; as well as RNAi molecules; siRNA molecules and the like; which can inhibit transcription of RNA molecules encoding the TAG synthesising enzyme.
  • RNAi molecules, siRNA molecules based on nucleotide sequence information for a gene product, such as a protein or enzyme, is well known to those skilled in the art and a matter of routine experimentation, (refer Small I, 2007; and Mansoor S. et al 2006)
  • nucleic acid molecule as used herein may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single- or doublestranded.
  • the nucleic acid molecule may also optionally comprise one or more synthetic, non-natural or altered nucleotide bases, or combinations thereof.
  • expression as used herein broadly refers to the process by which a nucleic acid molecule is converted by transcription and then translated into a protein/enzyme.
  • fragment nucleic acid molecule' refers to a nucleic acid molecule which represents a portion of the nucleic acid molecule of the present invention and is therefore less than full length and comprises at least a minimum sequence capable of hybridising stringently with a nucleic acid molecule of the. present invention (or a sequence complementary thereto).
  • a "fragment" of a polypeptide of the present invention is a portion of the polypeptide that is less than full length.
  • the polypeptide fragment has at least approximately 60% identity to a polypeptide of the present invention, more preferably at least approximately an 80% identity, and most preferably at least approximately a 90% identity.
  • the fragment has size of at least 10 amino acids, more preferably at least 15 amino acids, and most preferably at least 20 amino acids.
  • fragment or variant in relation to a nucleic acid it is meant that the fragment or variant (such as analogue, derivative or mutant) encodes a polypeptide capable of being used to produce the required protein.
  • 'functional' refers to either: a nucleic acid molecule which encodes a polypeptide capable of acting as an oleosin/polyoleosin or TAG synthesising enzyme
  • gene refers to the DNA or set of chromosomes or genes that make up an organism, and is passed to the organism's offspring.
  • variant refers to nucleotide and polypeptide sequences wherein the nucleotide or amino acid sequence exhibits substantially 60% or greater homology with the nucleotide or amino acid sequence of the Figures, preferably 75% homology and most preferably 90-95% homology to the sequences of the present invention. - as assessed by GAP or BESTFIT (nucleotides and peptides), or BLASTP (peptides) or BLAST X (nucleotides).
  • the variant may result from modification of the native nucleotide or amino acid sequence by such modifications as insertion, substitution or deletion of one or more nucleotides or amino acids or it may be a naturally-occurring variant.
  • variant also includes homologous sequences which hybridise to the sequences of the invention under standard hybridisation conditions defined as 2 x SCC at 55 0 C, or preferably under stringent hybridisation conditions defined as 2 x SSC at 65 0 C or very stringent hybridisation conditions defined as 0.1 x SSC at 65 0 C, provided that the variant is capable of substantially performing the equivalent biological function of oleosin/polyoleosin; or TAG synthesising enzyme; as would be required to perform the present invention.
  • the nucleotide sequence of the native DNA is altered appropriately. This alteration can be effected by synthesis of the DNA or by modification of the native DNA, for example, by site-specific or cassette mutagenesis.
  • site-specific primer directed mutagenesis is employed, using techniques standard in the art.
  • the term 'manipulated', 'manipulation' or grammatical variations thereof refers to the alteration of genetic information in a plant or part thereof, by a number of suitable genetic techniques, including, but not limited to:
  • introducing when used in the context of inserting a nucleic acid molecule into a cell, means “transfection” or “transformation” or “transduction” and includes reference to the incorporation or transfer of a nucleic acid molecule into a eukaryotic or prokaryotic cell where the nucleic acid molecule may be incorporated into the genome of the cell (e.g. chromosome, plasmid, plastid, mitochondrial DNA), converted into an autonomous replicon, or transiently expressed (e.g. transfected mRNA).
  • chromosome e.g. chromosome, plasmid, plastid, mitochondrial DNA
  • transiently expressed e.g. transfected mRNA
  • nucleic acid molecule as used herein may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single-, double-, or triple- stranded.
  • the nucleic acid molecule may also optionally comprise one or more synthetic, non- natural or altered nucleotide bases, or combinations thereof.
  • transformation refers to a process by which the genetic material carried by an individual cell is altered by incorporation of exogenous DNA into its genome.
  • ortholog refers to a functionally equivalent yet distinct corresponding nucleotide or amino acid sequence that may be derived from another plant.
  • an ortholog may have a substantially identical nucleotide or amino acid sequence to the sequences of the present invention as set forth in the sequence listing.
  • 'homolog' refers to a related gene from a different but related species.
  • Figure 1 shows a coomassie gel and lmmunoblot of five Brassica oleraceae samples which have had oil body preps extracted from seed. All the samples were of 35S-white clover oleosin monomer;
  • Figure 2 shows an lmmunoblot of oil body preparations from seeds from independent Arabidopsis thaliana transformants containing 35S- sesame seed oleosin/polyoleosin ;
  • Figure 3 shows a DGAT1 nucleotide and translated amino acid sequence
  • Figure 4 shows a DGAT2 nucleotide and translated amino acid sequence
  • Figure 5 shows a PDAT nucleotide and translated amino acid sequence
  • FIG. 6 shows an SDS-PAGE/Coomassie gel (top panel) and lmmunoblot (bottom panel) of 3.5 day old ryegrass leaves over expressing Arabidopsis thaliana DGAT1.
  • Arrows indicate immunoreactive band of the expected size (59kDa).
  • the indicated band in the AtDS control lane also correlated with the only immunoreactive band from microsomal preparations from the same sample.
  • DGAT1 would be expected to be in the microsomal preparation as it is localised within the ER.;
  • Figure 7 shows a Nile Red (top panel) staining of ryegrass plants over expressing Arabidopsis thaliana DGAT1 and protein extracts (bottom panel) showing oil in water emusion from the two plants over expressing Arabidopsis thaliana DGAT1 ;
  • Figure 8 shows a SDS-PAGE/immunoblot of Arabidopsis thaliana leaves overexpressing sesame seed oleosin under the control of the CaMV35s promoter.
  • pRShi control plant transformed with empty vector
  • PSP1 lines transgenic plants over expressing sesame seed oleosin under the control of the CaMV35s promoter. Arrow indicates immunoreactive band of the expected size;
  • Figure 9 shows an Influence of additional oleosin/polyoleosin accumulation on the thermal stability of oil bodies from Arabidopsis thaliana
  • Figure 10 shows an over accumulation of oleosin in oil bodies (OBs) increases stability in rumen fluid.
  • the top panel shows SDS-PAGE/lmmunoblot of oil body extracts from transgenic Arabidopsis seeds over expressing a synthetic sesame seed oleosin nucleotide sequence
  • Figure 11 shows an expression of oleosin/polyoleosin and production of AOBs.
  • 70 ⁇ g of insoluble protein was used in the preparation of the AOBs, the proportion of each oleosin/polyoleosin within that 70 ⁇ g decreases with increasing repeat number (See AOB Co ⁇ massie and immunoblot panels);
  • FIG. 12 Stability of emulsions prepared with different oleosin/polyoleosin then incubated at 90 0 C.
  • Figure 13 shows a graph of estimated relative emulsion turbidity when the emulsions were prepared with different oleosin/polyoleosin then incubated at 90 0 C.
  • the negative control (-ve,- «- ), control (Ct, ••• ⁇ • ) and 6 ⁇ oleosin/polyoleosin ( •• ⁇ *.
  • Figure 14 shows a microscopic analysis of AOB prepared with different oleosin/polyoleosin and incubated at 90 0 C;
  • Figure 15 shows a Mean diameter of AOBs prepared with different oleosin/polyoleosin after incubation at 9O 0 C for 0, 20 and 60min;
  • Figure 16 shows a Microscopic analysis of AOBs prepared with varying amounts of oil and oleosin repeats
  • Figure 17 shows a Heat stability at 9O 0 C of AOBs prepared with varying amounts of oil and oleosin repeats
  • Figure 18 shows a Possible incomplete inclusion of polyoleosin in AOBs causes instability in 4 ⁇ , 5* and 6* oleosin/polyoleosin caused by insufficient disruption provided by sonication to allow the 6* oleosin/polyoleosin peptide fully denature and assemble with the AOB;
  • Figure 19 shows a Microscopic analysis of AOB stability in rumen fluid.
  • AOB stability decreased as the oleosin/TAG ratio decreased (seen by increase in AOB diameter as AOBs coalesce due to decreased oleosin present on the surface).
  • the greatest AOB stability was shown with the oleosin and 4% TAG sample which only showed signs of aggregation and some coalescence after 60 minutes in rumen fluid.
  • Figure 20 CaMV35S promoter nucleotide sequence and white clover oleosin nucleotide and translated amino acid sequence.
  • Figure 21 CaMV35S driving 1 sesame seed oleosin tandem repeat with the UBQ10 intron in the first repeat and translated amino acid sequence.
  • Figure 22 CaMV35S driving 3 sesame seed oleosin tandem repeats with the UBQ10 intron in the first repeat and translated amino acid sequence.
  • Figure 23 Arabidopsis oleosin promoter driving 1 sesame seed oleosin tandem repeat with the UBQ10 intron in the first repeat and translated amino acid sequence.
  • Figure 24 Arabidopsis oleosin promoter driving 3 sesame seed oleosin tandem repeats with the UBQ10 intron in the first repeat and translated amino acid sequence.
  • sesame seed oleosin either as a single unit or as tandem repeats for expression in both E. coli as well as plants (e.g., Arabidopsis and Lotus).
  • the original sesame seed oleosin nucleotide sequence and translated peptide sequence are from a sesame seed oleosin, GenBank clone AF091840.
  • the codons were optimised for both E. coli and Arabidopsis expression.
  • Each repeat used randomised degenerate codons to code for the specific amino acid sequence thus ensuring that the repeats will not be rearranged by non rec " bacteria such as Agrobacterium rhizogenes.
  • the construct was designed so that it can be relatively simply sublconed from the original backbone (pUC57) into both pET29a and various plant binary vectors. In order to allow simple restriction digestion and re-ligation to reduce the number of repeats as well as to enable us to paste in future peptides . between the repeats we engineered restriction sites between them.
  • the design allows various numbers of tandem repeats to be easily transferred into pET29a and to perform simple digestions on the original clone to remove different numbers of inserts then transfer to binary vectors.
  • For transfer to plant binary vectors we designed an attL1 site to the 5'end and an attl_2 site to the 3'end, these are compatible for with our GATEWAY constructs built in house.
  • Table 1 Comparison of E. coli and A. thaliana codon usage.
  • Each number represents the proportion that codon is used to code for the respective amino acid. Codons in grey were not used in the polyoleosin construct since they coded for the respective amino acid less than 10% of the time in either organism. Codons in bold and underlined were removed to raise the GC content and to remove cryptic splice sites and mRNA degradation signals (ATTTA).
  • ATTTA cryptic splice sites and mRNA degradation signals
  • the multiple cloning sites of both pUC57 and pET29a allowed the design of a sub- cloning strategy using multiple placements of the following restriction sites within the polyoleosin construct.
  • the phenylalanine codon TTT was removed and replaced by TTC; in one case the site was eliminated by moving the engineered Dral site to the 5' end of the MIu NI site. Combined these changes reduced the number of TTTT sites to 14 and the number of TTTTT sites to 1.
  • Vector NTI identified approximately 4 Pstl sites within the proposed polyoleosin construct with the closest to the 5' end occurring approximately 500 bases downstream. All these sites were eliminated using various combinations of degenerate codons and a new Pstl site was engineered at position 300 using. the degenerate codons. This places the intron in the first oleosin repeat and therefore enables the generation of all truncated versions with the intron. Using the UBQ 10 intron sequence (Norris et al., 1993) we engineered the 3' end to include a Pst1 site.
  • the new polyoleosin construct (containing the intron) was then analysed by NetGene2 (Hebsgaard et al., 1996; Brunak et al., 1991, web site address http://www.cbs.dtu.dk/services/NetGene2/) to confirm that the engineered intron would be predicted to be spliced correctly.
  • NetGene2 Hebsgaard et al., 1996; Brunak et al., 1991, web site address http://www.cbs.dtu.dk/services/NetGene2/
  • the repeats were linked using the previously engineered linking regions. These sequences were modified to remove all but the first Pst I sites in the first oleosin repeat and the removal of an Xho site in the second oleosin repeat. In our construct the ORF has no ATTTA or TTTT sites. Furthermore, when the sequence was re-analysed by NetGene2 the only predicted intron splice site in the ORF was the UBQ10 intron engineered into the Pstl site and the % identity of the repeats increased from an average of 74.8% identical to 79.1% identical. NetGene2 was used to predict the splicing of the proposed construct. The results indicated that the RNA should only be spliced at the acceptor and donor sites of the UBQ10 intron.
  • any oleosin/polyoleosin sequence or combinations of oleosin/polyoleosins, steroleosin/polyoleosins and caoleosin/polyoleosins and oleosin/polyoleosin linking sequences could be used.
  • the coding sequence of the complete ORF (after splicing) was then checked against a heptameric repeat of the original oleosin/polyoleosin translated sequence and found to be identical over the oleosin/polyoleosin coding regions.
  • EXAMPLE 3 ENHANCEMENT OF OLEOSIN AND POLYOLEOSIN PRODUCTION IN THE SEEDS
  • the white clover oleosin and polyoleosin constructs were transformed into fast cycling Brassica oleracea plants (using Agrobacterium mediated transformation).
  • T1 seed was received and 6 seeds per plant line were germinated. Seedlings were tested for Basta resistance, all resistant plants were potted and one susceptible plant was retained per line (used to generate a WT control). Plants were allowed to self pollinate and set seed, then seed was collected and cleaned up.
  • Crude oil body preps were prepared by grinding 200mg seed with a spatula tip of sand and 750 ⁇ l extraction buffer (10 mM Phosphate buffer, pH 7.5 containing 600 mM sucrose) in a mortar and pestle. A further 750 ⁇ l extraction buffer was added and the slurry transferred to an eppendorf tube. The sample was centrifuged 5 min at 14,000rpm then the aqueous layer removed to a new tube using a thin gel loading tip. The oil layer (any material remaining attached to the side of the tube) was resuspended with extraction buffer, and removed to a new tube where the volume was made up to the 500 ⁇ l mark on the side of the 2ml eppendorf tube. Samples of aqueous and oil layers were removed and added to an equal volume of 2 x loading buffer, mixed and boiled 5 mins.
  • extraction buffer 10 mM Phosphate buffer, pH 7.5 containing 600 mM sucrose
  • Arabidopsis seed was ground in 300 ⁇ l extraction buffer (10 mM Phosphate buffer, pH 7.5 containing 600 mM sucrose) using a Wiggenhauser D- 130 Homogenizer. Seed was ground until crushed and the sample appeared "creamy” and frothy as starch was released from the seeds. The homogenizer tip was rinsed in 1 ml buffer and this volume was added to the crushed seed. Samples were prepared up to this point in lots of 4, then centrifuged 14,000rpm for 5 mins. A thin gel loading tip was used to gently push the oil layer to the side of the tube, and the aqueous layer removed to a fresh tube.
  • the oil layer was resuspended from the side of the tube using extraction buffer and placed in a fresh 2 ml tube. The final volume was made up to 0.5 ml (as read on the side of the tube) with extraction buffer. Oil body preparation was added to an equal volume of 2 x gel loading buffer and boiled 5 mins before loading on to gel. Samples were run either on duplicate pre-cast N ⁇ PAGE Novex 4-12% Bis-Tris Midi Gel (Invitrogen) on the Criterion gel rig system (Bio-Rad), or on hand-cast Tris-HCI gels. One gel was stained by SafeStain (Invitrogen) to show total protein loaded and the other was blotted onto Nitrocellulose membrane using the iBlot system (Invitrogen).
  • the negative control was a sample extracted from wild type Columbia seed and the positive control was the same extraction method (although grinding was by mortar and pestle) performed on wild type sesame seed. 10 ⁇ l of each sample and the negative control were loaded onto the gel, and 5 ⁇ l was used for the positive control.
  • the membrane was blocked in a solution of 12.5% skim milk powder in TBST (50 mM Tris pH 7.4, 100 mM NaCI, 0.2 % Tween) for at least 1.5 hours.
  • the membrane was then washed in TBST 3 x 5 mins before incubating with primary antibody (anti-sesame) at 1/1000 in TBST for 1 hour at room temperature.
  • primary antibody anti-sesame
  • secondary antibody anti-rabbit
  • Figure 2 shows the accumulation of single and tandem repeat sesame seed oleosin units in the seed under the control of the CaMV35S promoter. It can be seen that recombinant oleosin and polyoleosin was found to accumulate in the seeds of Arabidopsis thaliana and was correctly targeted to the oil bodies (Figure 2).
  • TAG Tricotyledonous plants
  • TAG Tricotyledonous plants
  • the main form of energy storage is carbohydrates (e.g., starch)
  • the only committed step in TAG biosynthesis is the last one, i.e., the addition of a third fatty acid to an existing diacylglycerol, thus generating TAG.
  • this step is performed by one of three enzymes including: acyl CoA:diacylglycerol acyltransferase (DGAT1), Figure 3; an unrelated acyl CoA:diacyIglycerol acyl transferase (DGAT2), Figure 4; and phospholipididiacylglycerol acyltransferase (PDAT), Figure 5 (Zou et al., 1999; Bouvier-Nave et al., 2000; Dahlqvist et al., 2000; Lardizabal et al., 2001).
  • DGAT1 acyl CoA:diacylglycerol acyltransferase
  • DGAT2 unrelated acyl CoA:diacyIglycerol acyl transferase
  • PDAT phospholipididiacylglycerol acyltransferase
  • EXAMPLE 5 PRODUCTION OF OLEOSIN/POLYOLEOSIN IN THE LEAVES OF ARABIDOPSIS THALIANA
  • Leaves were sampled from plants over expressing the single sesame seed oleosin construct and analysed by SDS- PAGE/immunoblot using the polyclonal anti-sesame seed oleosin antisera. It can be seen that recombinant oleosin was found to accumulate in the leaves of Arabidopsis thaliana leaves (Figure 8). This used approximately 3 fully mature leaves of Arabidopsis growing in the potted soil or 100 mg of leaves harvested from Arabidopsis seedlings germinated on plant medium containing 1/2x MS with 1 % sucrose (w/v).
  • oleosin/polyoleosin protein in the same cell (for example leaf cell) will result in the production of triglyceride oil bodies encapsulated by a phospholipid monolayer embedded with oleosin; this has been demonstrated in yeast (Ting et al., 1997) and seeds (Abell et al., 2004).
  • Oil body preparations were made from Arabidopsis wild type seeds and seeds accumulating recombinant sesame seed oleosin and polyoleosin were subjected to 9O 0 C for 24hr, it can be seen that the oil body preparations made from seeds accumulating recombinant sesame seed oleosin/polyoleosin were more stable than those made from wild type seeds accumulating wild type levels of oleosin, this is seen by the thicker emulsification layer correlating with increased oleosin and increasing oleosin repeat number (Figure 9). In addition, increasing the number of oleosin units increased the thermal stability.
  • EXAMPLE 7 INCREASED SEED OIL BODY STABILITY IN RUMEN FLUID DUE TO INCREASED OLEOSIN/POLYOLEOSIN LEVELS
  • Oil bodies were extracted from the seeds of four Arabidopsis lines expressing recombinant sesame seed single oleosin constructs and the level of oleosin expression determined by immunoblot (Figure 10). Oil bodies were extracted using the homogeniser from 25mg seed, in a final volume approximately 500 ⁇ L and stored at 4 0 C overnight. The preparations were re-mixed and an aliquot added to an equal volume (75 ⁇ L) of rumen fluid. Samples were incubated at 39°C without shaking; samples were vortexed each time before an aliquot was removed at each time point (0, 0.5, 1 , 2, 4, and 6h).
  • AOBs Artificial Oil Bodies
  • a fresh 1OmL culture (pET29 [Novagen] vector containing a oleosin/polyoleosin sequence, within E. coli BL21 Rosetta-Gami) was grown at 37°C with shaking (180-200rpm) until OD 60 O * 0.5 - 0.7 ( ⁇ 120min). Recombinant protein expression was induced by the addition of IPTG to 1 mM final concentration. The induced culture was incubated at 37°C with shaking (180-200rpm) for a further 2 - 3h. 1000 ⁇ L aliquots of the culture were transferred to 1.5mL microfuge tubes and the cells pelleted by centrifugation at 2655*g for 5mi ⁇ at 4°C. The supernatant was discarded and the cell pellet immediately used for subsequent steps or stored at -20 0 C until required.
  • Each cell pellet was resuspend in 1000 ⁇ L Oilbody Buffer (5OmM NaPO 4 pH ⁇ .O, 10OmM NaCI) and sonicated (Sonics & Materials Vibra-Cell VC600, 600W, 2OkHz; 1/8" tapered micro-tip probe) off/on ice four times using the following settings - Pulse 100, Time 10, Power 4.
  • Oilbody Buffer 5OmM NaPO 4 pH ⁇ .O, 10OmM NaCI
  • sonicated Sonics & Materials Vibra-Cell VC600, 600W, 2OkHz; 1/8" tapered micro-tip probe
  • Insoluble protein was pelleted by centrifugation at 20,817*g for 10min at 4 0 C. The supernatant was discarded and 500 ⁇ L Oilbody Buffer was added to the pellet, which was briefly sonicated to resuspend the insoluble protein pellet (Pulse 100, Time 10, Power 4). Small aliquots of the resuspended pellet were removed for protein concentration determination (using Bio-Rad Protein Dye). A maximum of • 500 ⁇ l_ of the resuspended pellet was transferred to a fresh 1.5mL microfuge tube, ensuring that the amount of protein in each tube was the same then made up to 1000 ⁇ L with Oilbody Buffer.
  • a 40 ⁇ L aliquot of Purified Sesame Oil (ether extracted oil from sesame seed flour) was added to each tube and sonicated off/on ice four times using the following settings - Pulse 100, Time 10, Power 4.
  • the AOBs were recovered by tilting the tube on its side and removing the lower aqueous phase and any pelleted particulates from beneath the AOB layer.
  • the AOBs were resuspended in 1000 ⁇ L Oilbody Buffer.
  • 3* oleosin/polyoleosin appeared to be the most heat stable, as indicated by the diameter of oil bodies which were less than 2.0 ⁇ m even after incubation at high temperature for 1 h.
  • Do increased numbers of oleosin units require more oil to form AOBs (i.e. provide the surface area to fit the polyoleosin peptides).
  • the number of oleosin units in a oleosin/polyoleosin peptide influences AOB stability
  • Increasing the amount of sonication energy used to form an emulsion from 6* polyolebsin may offer a means of generating emulsions more stable than those seen thus far with the 3* oleosin/polyoleosin emulsions.
  • the incorporation of the hydrophobic regions into the micelle can also be used to explain why the degree of stabilisation offered by the 1 x oleosin/polyoleosin is not as great as that seen with the majority of the longer oleosin/polyoleosin.
  • the single oleosin unit lacks a secondary anchoring point in • the form of another embedded hydophobic region, and the steric hindrance is overcome by the proximity of nearby micelles and is thus unable to prevent coalescence.
  • AOBs with a constant amount of recombinant oleosin were generated with 4, 8 and 18% TAG. These were incubated in 1/2x rumen fluid at 39°C and analysed by microscope at various time points.
  • AOB stability decreased as the oleosin/TAG ratio decreased (seen by increase in AOB diameter as AOBs coalesce due to decreased oleosin present on the surface) (Figure 19). The greatest AOB stability was shown with the oleosin and 4% TAG sample which only showed signs of aggregation and some coalescence after 60 minutes in rumen fluid.
  • Phospholipid:diacylglycerol acyltransferase an enzyme that catalyzes ' the acyl-CoA-independent formation of triacylglycerol in yeast and plants. Proc Natl Acad Sci U S A. 97, 6487-6492.
  • Jenkins TC McGuire MA. (2006). Major advances in nutrition: impact on milk composition. J Dairy Sci. 89(4): 1302-10. Review. Jenkins TC, Bridges WC Jr. (2007). Protection of fatty acids against ruminal biohydrogenation in cattle. Eur. J. Lipid Sci. Technol. 109:778-789.
  • DGAT2 Is a new diacylglycerol acyltransferase gene family. J. B.C. 276, 38862- 38869. Lock AL, Bauman DE. (2004). Modifying milk fat composition of dairy cows to enhance fatty acids beneficial to human health. Lipids. 39(12): 1197-206. Review.
  • Tung tree DGAT1 and DGAT2 have nonredundant functions in triacylglycerol biosynthesis and are localised to different subdomains of the endoplasmic reticulum. Plant Cell., 18,2294-2313.
  • the Arabidopsis thaliana TAG1 mutant has a mutation in a diacylglycerol acyltransferase gene. Plant J. 19, 645-653.

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Abstract

This invention relates to improvements in and relating to oil production in plants and seeds. In particular, this invention relates to methods and constructs for increasing the ratio of oleosin/polyoleosin to TAG synthesising enzymes in seeds, or for producing oleosin/polyoleosin and TAG synthesising enzymes in plants, including in the vegetative portions, or for modulating the amount of TAG synthesising enzymes produced in plants. The invention also relates to new plants comprising nucleic acid sequences comprised by such constructs.

Description

IMPROVEMENTS IN AND RELATING TO OIL PRODUCTION PLANTS
STATEMENT OF CORRESPONDING APPLICATIONS
This application is based on the provisional specification filed in relation to New Zealand Patent Application Number 554114, the entire contents of which are incorporated herein by reference.
TECHNICAL FIELD
The invention relates to improvements in and relating to oil production in plants and seeds. In particular, this invention relates to methods, including the use of constructs for increasing the ratio of oleosin/polyoleosin to triacylglycerol (TAG) in the seeds of a plant and the ratio of oleosin/polyoleosin to TAG in the vegetative portions of a plant.
The invention also relates to methods for selecting plants capable of generating new varieties which have increased oleosin/polyoleosin content or a high oleosin/polyoleosin relative to TAG ratio. In addition the invention also relates to methods for generating plants, or plant cells which have increased oleosin/polyoleosin content or a high oleosin/polyoleosin relative to TAG ratio.
BACKGROUND ART
Triacylglycerol
Most plants synthesise and store significant amounts of triacylglycerol (TAG) only in developing seeds and pollen cells where it is subsequently utilised to provide catabolizable energy during germination and pollen tube growth. Dicotyledonous plants can accumulate up to approximately 60% of their seed weight as TAG. Ordinarily, this level is considerably lower in the monocotyledonous seeds where the main form of energy storage is carbohydrates (e.g. starch).
The only committed step in TAG biosynthesis is the last one, i.e. the addition of a third fatty acid to an existing diacylglycerol, thus generating TAG. In plants this step is predominantly (but not exclusively) performed by one of three TAG synthesising enzymes including: acyl CoA: diacylglycerol acyltransferase (DGAT1); an unrelated acyl CoA: diacylglycerol acyl transferase (DGAT2); and phosphatidylcholine-sterol O-acyltransferase (PDAT).
Oleosin
Oleosins are specific plant proteins usually found only in seeds and pollen. Their function is to stop oil bodies coalescing during seed and pollen maturation. In nature, TAG produced in seeds and pollen form micelles encapsulated by a spherical phospholipid monolayer embedded with one or several species of oleosin proteins. Including caoleosin (calcium binding) and steroleosin (sterol binding) (Tzen et al., 2003) Oil bodies in fruit tissues (such as olives and avocados) do not contain oleosins.
The properties of the major oleosins is relatively conserved between plants and is characterised by the following:
• 15-25kDa protein corresponding to approximately 140-230 amino acid- residues.
• The protein sequence can be divided almost equally along its length into 4 parts which correspond to a N-terminal hydrophilic region, two centre hydrophobic regions Goined by a proline knot or knob) and a C-terminal hydrophilic region.
• The topology of oleosin is attributed to its physical properties which includes a folded hydrophobic core flanked by hydrophilic domains. This arrangement confers an amphipathic nature to oleosin resulting in the hydrophobic domain being embedded in the phospholipid monolayer (Tzen et al., 1992) while the flanking hydrophilic domains are exposed to the aqueous environment of the cytoplasm.
Polvoleosin
Polyoleosin is the head to tail fusion of two or more oleosin units (Roberts et al., 2008). Altering the number of oleosin units enables the properties (thermal stability and degradation rate) of the oil bodies to be tailored. Expression of polyoeosin in planta leads to incorporation of the polyoleosin units to the oil bodies as per single oleosin units (Scott et al., 2007). Oil Bodies
An oil body that is produced in seed or pollen consists of a droplet of TAG surrounded by a monolayer of phospholipid which is in turn surrounded by a layer of oleosiη proteins. Where the hydrophobic acyl moiteies of the phospholipids interact with the encapsulated TAG and the hydrophilic head groups face the cytoplasm and the oleosins are orientated with their central hydrophobic amino acid domains protruding through the phospholipid monolayer and into the TAG core of the oil body. Oil bodies are naturally produced in the seeds and pollen of many plants. Oil bodies can also be generated artificially by combining oleosins, triacylglycerides and phospholipids (Peng et al., 2004).
The size and number of oil bodies depends on the ratio of oleosin/polyoleosin to TAG within the plant cell (Siloto et al., 2006).
Biohydrogenation
It has been demonstrated that the lipid profile of ruminant animal feed in turn influences the lipid profile of meat and dairy products (Demeyer and Doreau, 1999). Different plants have different lipid profiles; by selectively feeding animals only plants with the desired lipid profile it is possible to positively influence the lipid profile of downstream meat and dairy products. In ruminants the final lipid make up of the meat and milk is not only influenced by the dietary lipids but is also heavily influenced by biohydrogenation (Jenkins and McGuire 2006; Firkins et al., 2006; Lock and Bauman, 2004). Biohydrogenation is the hydrogenation of non-reduced compounds (such as unsaturated fats) by the biota present in the rumen. Biohydrogenation can be prevented/delayed by encapsulating the lipids in a protein or proteins that provide resistance to microbial degradation (Jenkins and Bridges 2007). '
Oleosin/polyoleosin in planta
The inventors have found that oil bodies with an oleosin/polyoleosin outer layer can protect, or at least delay, degradation and/or biohydrogenation, of TAG, within the stomach and/or rumen of an animal, allowing the intact individual lipids from the TAG to be absorbed by the animal in the intestine. Therefore, it would be useful in terms of dietary intake of an animal if there could be provided a means for increasing the oleosin/polyoleosin content within seeds so as to increase the .. protection provided to the oil bodies.
The existence of diacylglycerides as membranes within the vegetative portions of plants (e.g. the leaves) has been documented (Mekhedov et al., 2000).
It would therefore be useful if plants could be produced which contain oleosin/polyoleosin in their vegetative portions in addition to the seeds of said plants. These plants or their genetic sequences could then be used to develop plants which have oleosin/polyoleosin and TAG produced in the vegetative portions of a plant which would be useful in terms of dietary intake. In particular, it would be useful to identify plants that produce high levels of oleosin/polyoleosin in their vegetative portions as these can be further manipulated to also produce DGAT1 or other TAG synthesising enzymes so as to simultaneously produce a high level of oleosin/polyoleosin and TAG in the vegetative portion of the plant to generate oil bodies encapsulated with oleosin/polyoleosin.
It is an object of the present invention to address the foregoing problems or at least to provide the public with a useful choice.
All references, including any patents or patent applications cited in this specification are hereby incorporated by reference. No admission is made that any reference constitutes prior art. The discussion of the references states what their authors assert, and the applicants reserve the right to challenge the accuracy and pertinency of the cited documents. It will be clearly understood that, although a number of prior art publications are referred to herein, this reference does not constitute an admission that any of these documents form part of the common general knowledge in the art, in New Zealand or in any other country.
It is acknowledged that the term 'comprise' may, under varying jurisdictions, be attributed with either an exclusive or an inclusive meaning. For the purpose of this specification, and unless otherwise noted, the term 'comprise' shall have an " inclusive meaning - i.e. that it will be taken to mean an inclusion of not only the listed components it directly references, but also other non-specified components or elements. This rationale will also be used when the term 'comprised' or 'comprising1 is used in relation to one of more steps in a method or process.
Further aspects and advantages of the present invention will become apparent from the ensuing description which is given by way of example only.
DISCLOSURE OF INVENTION
According to a first aspect of the present invention there is provided a construct which includes:
- at least one promoter;
a nucleic acid molecule encoding an oleosin/polyoleosin protein; arid
at least one nucleic acid molecule encoding an triacylglycerol biosynthetic enzyme (TAG synthesising enzyme);
wherein the promoter(s) are operatively linked to the nucleic acid molecules so as to cause expression of oleosin/polyoleosin and at least one TAG synthesising enzyme.
It will be appreciated that the TAG synthesising enzymes may be any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant and plant cell. By way of example only, the enzymes may preferably be; acyl CoA : diacylglycerol acyltransferase (DGAT1); acyl CoA : diacylglycerol acyl transferase (DGAT2); or phospholipid : diacylglycerol acyltransferase (PDAT).
Preferably, there may be at least one TAG synthesising enzyme within the construct. However, in some other embodiments, there may be more than one enzyme within the construct.
It will be appreciated that the oleosin/polyoleosin gene and/or the TAG synthesising enzymes may come from a number of plant species. For example, the plant species may be either monocots, dicots or gymnosperms. Non-limiting examples of monocots, include; grasses from the genera Lolium, Festuca, Paspalum,
Pennisetum, Panicum and other forage and turfgrasses, corn, rice, sugarcane, oat, wheat and barley. While non-limiting examples of dicotyledons, include: Arabidopsis, tobacco, soybean, canola, cotton, potato, chickpea, medics, white clover, red clover, subterranean clover, alfalfa, eucalyptus, poplar, hybrid aspen, and gymnosperms, for example, pine tree.
In some preferred embodiments, the nucleic acid molecule encoding an oleosin or polyoleosin protein may have a nucleotide sequence selected from: a) SEQ ID NO's 1, 3, 5, 7 or 9, or other nucleic acid molecules encoding an oleosin gene;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b);
d) a homolog or an ortholog of a sequence in a), b), or c); or
e) a series of fused head to tail tandem repeats of sequences in a), b), c), or d).
In some preferred embodiments, the nucleic acid molecule encoding a TAG synthesising enzyme may have a nucleotide sequence selected from:
a) SEQ ID NO's 11 , 13 or 15 or other nucleic acid molecules encoding TAG synthesising enzymes;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b); or
d) a homolog or an ortholog of a sequence in a), b), or c);
e) an antisense sequence to a RNA sequence obtained from a sequence in a), b), c) or d).
According to a second aspect of the present invention there is provided a use of at least one construct which includes a nucleic acid molecule encoding oleosin/polyoleosin to increase the ratio of oleosin/polyoleosin to TAG within a seed.
According to a third aspect of the present invention there is provided a use of at least one construct substantially as described above to produce oleosin/polyoleosin and TAG synthesising enzymes in the vegetative portions of a plant. According to a forth aspect of the present invention there is provided a method of increasing the ratio of oleosin/polyoleosin to triacylglycerol (TAG) within a plant seed comprising a step of manipulating the genome of a plant such that the seeds of said plant express more oleosin/polyoleosin than a corresponding wild-type seed.
According to a fifth aspect of the present invention there is provided a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, comprising the step of manipulating the genome of a plant so as to express more oleosin/polyoleosin and TAG synthesising enzyme in the vegetative portions than a corresponding wild-type plant.
According to a sixth aspect of the present invention there is provided a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, including the steps of:
(a) genetically manipulating a plant to produce oleosin/polyoleosin in the vegetative portion of the plant; and
(b) genetically manipulating a plant to produce TAG synthesising enzyme in the vegetative portion of the plant.
In some embodiments, there may be a further step (c) which is the step of: measuring oleosin/polyoleosin and TAG in manipulated plants to find plants with a higher oleosin/polyoleosin to TAG ratio in the vegetative portion of the plant.
According to a further aspect of the present invention there is provided a method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, including the steps of:
(a) genetically manipulating a first plant to produce oleosin/polyoleosin in the vegetative portion of the plant;
(b) genetically manipulating a second plant to produce TAG synthesising enzyme in the vegetative portion of the plant.
In some embodiments, there may be a further step (c) which is the step of: measuring the levels of:
(i) oleosin/polyoleosin in the first plant; and (ii) TAG in the vegetative portions of the second plant; -
to find a pair of plants, wherein the first plant produces sufficient levels of oleosin/polyoleosin relative to the amount of TAG synthesising enzyme produced in the second plant to produce oil bodies encapsulating TAG which are capable of protecting and/or delaying degradation or biohydrogenation of the TAG within the stomach or rumen of an animal.
In some further embodiments, there may be even a further step (d) which is the step of: crossing the first and second plants to produce a plant expressing oleosin/polyoleosin and TAG synthesising enzyme.
The TAG synthesising enzymes may be any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant and plant cell. By way of example only, the enzymes may be selected from one of the following; acyl CoA: diacylglycerol acyltransferase (DGAT1); acyl CoA: diacylglycerol acyl transferase (DGAT2); or phospholipid: diacylglycerol acyltransferase (PDAT).
Preferably, there may be at least one TAG synthesising enzyme within the construct. However, in some other embodiments, there may be more than one enzyme present within the construct.
It will be appreciated that the term 'vegetative portions' of the plant, can include; the shoots, leaves, fruit, bark, pods, roots, nodules, stems and the like, including parts thereof. Preferably, the vegetative portions of the plant may be the leaves.
According to a further aspect of the present invention there is provided a seed of a plant which has been manipulated to express more oleosin/polyoleosin than a corresponding wild-type seed.
According to a further aspect of the present invention there is provided a plant or part thereof which has been manipulated to express more oleosin/polyoleosin. than a corresponding wild-type plant or part thereof.
According to another aspect of the present invention there is provided a plant cell which has been manipulated to produce more oleosin/polyoleosin than a corresponding wild-type plant cell.
According to a further aspect of the present invention there is provided a leaf of a plant which expresses oleosin/polyoleosin and a TAG synthesising enzyme.
According to a further aspect of the present invention, there is provided a plant or part thereof which has been manipulated to express both oleosin/polyoleosin and a TAG synthesising enzyme.
According to a further aspect of the present invention, there is provided a plant or part thereof which has been manipulated to produce both oleosin/polyoleosin and TAG synthesising enzyme.
According to yet another aspect of the present invention there is provided an animal feed which includes seeds and/or vegetative portions of plants, which have been manipulated to have elevated levels of oleosin/polyoleosin and/or TAG ..compared to the corresponding wild type seed or plant.
Preferably, there is a high ratio of oleosin/polyoleosin to TAG in said animal feed.
According to another aspect of the present invention there is provided an animal feed which includes seeds which have been manipulated to have elevated oleosin/polyoleosin content compared to the corresponding wild type seeds.
According to a still further aspect of the present invention there is provided an animal feed which includes a vegetative portion of a plant which has been manipulated to have elevated oleosin/polyoleosin to TAG content compared to the vegetative portion of a corresponding wild type plant.
According to a further aspect of the present invention there is provided an animal feed which includes a seed and vegetative portion of a plant wherein the collective ratio of oleosin/polyoleosin to TAG is capable of protecting oil bodies in the rumen of an animal.
According to another aspect of the present invention there is provided a plant which has been manipulated to produce TAG synthetic enzymes in the vegetative portions of the plants.
According to yet another aspect of the present invention there is provided a plant or plant cell which has been transformed with a construct which includes:
- at least one promoter; - a nucleic acid molecule encoding at least one TAG synthesising enzyme;
wherein said promoter is operatively linked to said nucleic acid molecule so as to cause expression of said TAG synthesising enzyme.
A plant or plant cell transformed by a construct substantially as described above wherein the nucleic acid molecule ensuring a TAG synthesising enzyme comprising an antisense sequence.
The use of information regarding the oleosin/polyoleosin and/or TAG content in plants or seeds in a selection process for generating new plants.
The use of antisense sequence to an RNA molecule obtained from TAG synthesising enzyme nucleic acid molecule to reduce TAG levels with a cell or in planta.
Preferably, the selection process involves identifying plants or seeds which have a high oleosin/polyoleosin content and/or a low TAG content.
The generation of new plants can be by either molecular genetic techniques or by traditional selection breeding techniques.
According to another aspect there is provided a plant or plant cell which produces more or less TAG than a corresponding wild-type plant or cell.
The manipulation of the genome may in some preferred embodiments be undertaken by molecular genetic techniques.
In some other embodiments the manipulation of the genome may be undertaken using traditional selective breeding techniques.
The use of nucleotide sequence information for TAG synthesising enzyme to generate plantibodies or other molecules which can inhibit the plant metabolic pathways which are involved in the synthesis of TAG synthesising enzyme. It should be appreciated that the generation of plantibodies is well known in the art, (refer Jobling SA et al 2003).
The term "construct" as used herein refers to an artificially assembled or isolated nucleic acid molecule which includes the gene or nucleic acid molecule of interest. In general a construct may include the gene or genes of interest and appropriate regulatory sequences. It should be appreciated that the inclusion of regulatory sequences in a construct is optional for example, such sequences may not be required in situations where the regulatory sequences of a host cell are to be used. The term construct includes vectors but should not be seen as being limited thereto.
The term 'wild type' or grammatical variations thereof, refers to the genome of a plant and/or seed as found in nature.
The term 'seed' may refer to the seed as a whole or a cell within the seed.
The term 'vector' as used herein encompasses both cloning and expression vectors. Vectors are often recombinant molecules containing nucleic acid molecules from several sources.
The cloning vector selected may depend on the host and host cell as used. In general the vector may:
• self replicate;
• include a marker gene for selection of transformed cells;
• have a nucleic acid sequence capable of being cleaved by an endonuclease
Some examples of suitable vectors may include:
• General cloning - pGEMT
• Binary plant transformation vectors - pRD410, pHZbar, pKR10, pGREEN, pBin19.
An "expression vector" refers to a cloning vector which also contains the necessary regulatory sequences to allow for transcription and translation of the integrated gene of interest, so that the gene product of the gene can be expressed.
The term "promoter" refers to a sequence of DNA to which RNA polymerase (an enzyme) will bind and initiate transcription of a nucleic acid molecule of interest (a gene) to produce mRNA. Preferably, a promoter may be a plant promoter. Even more preferably, the plant promoter may be any suitable promoter for the plant of interest and which operates within (i.e. the promoter) the portion of the plant that expression is required in. For example, a seed specific promoter, or a vegetative specific promoter, may be used dependent on where you want expression to occur.
The promoter molecule may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single- or doublestranded. The promoter molecule may also optionally comprise one or more synthetic, non-natural or altered nucleotide bases, or combinations thereof.
The term 'antisense' includes a nucleic acid molecule which has a nucleotide sequence which can bind (i.e. is complementary) to a TAG synthesising enzyme RNA molecule; as well as RNAi molecules; siRNA molecules and the like; which can inhibit transcription of RNA molecules encoding the TAG synthesising enzyme. The generation of RNAi molecules, siRNA molecules, based on nucleotide sequence information for a gene product, such as a protein or enzyme, is well known to those skilled in the art and a matter of routine experimentation, (refer Small I, 2007; and Mansoor S. et al 2006)
The term "nucleic acid molecule" as used herein may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single- or doublestranded. The nucleic acid molecule may also optionally comprise one or more synthetic, non-natural or altered nucleotide bases, or combinations thereof.
The term "expression" as used herein broadly refers to the process by which a nucleic acid molecule is converted by transcription and then translated into a protein/enzyme.
The term 'fragment nucleic acid molecule' as used herein refers to a nucleic acid molecule which represents a portion of the nucleic acid molecule of the present invention and is therefore less than full length and comprises at least a minimum sequence capable of hybridising stringently with a nucleic acid molecule of the. present invention (or a sequence complementary thereto).
A "fragment" of a polypeptide of the present invention is a portion of the polypeptide that is less than full length. Preferably the polypeptide fragment has at least approximately 60% identity to a polypeptide of the present invention, more preferably at least approximately an 80% identity, and most preferably at least approximately a 90% identity. Preferably the fragment has size of at least 10 amino acids, more preferably at least 15 amino acids, and most preferably at least 20 amino acids.
By "functionally active" in relation to a nucleic acid it is meant that the fragment or variant (such as analogue, derivative or mutant) encodes a polypeptide capable of being used to produce the required protein.
The term 'functional' refers to either: a nucleic acid molecule which encodes a polypeptide capable of acting as an oleosin/polyoleosin or TAG synthesising enzyme
The term "genome" refers to the DNA or set of chromosomes or genes that make up an organism, and is passed to the organism's offspring.
The term "variant" as used herein refers to nucleotide and polypeptide sequences wherein the nucleotide or amino acid sequence exhibits substantially 60% or greater homology with the nucleotide or amino acid sequence of the Figures, preferably 75% homology and most preferably 90-95% homology to the sequences of the present invention. - as assessed by GAP or BESTFIT (nucleotides and peptides), or BLASTP (peptides) or BLAST X (nucleotides). The variant may result from modification of the native nucleotide or amino acid sequence by such modifications as insertion, substitution or deletion of one or more nucleotides or amino acids or it may be a naturally-occurring variant. The term "variant" also includes homologous sequences which hybridise to the sequences of the invention under standard hybridisation conditions defined as 2 x SCC at 550C, or preferably under stringent hybridisation conditions defined as 2 x SSC at 650C or very stringent hybridisation conditions defined as 0.1 x SSC at 650C, provided that the variant is capable of substantially performing the equivalent biological function of oleosin/polyoleosin; or TAG synthesising enzyme; as would be required to perform the present invention. Where such a variant is desired, the nucleotide sequence of the native DNA is altered appropriately. This alteration can be effected by synthesis of the DNA or by modification of the native DNA, for example, by site-specific or cassette mutagenesis. Preferably, where portions of cDNA or genomic DNA require sequence modifications, site-specific primer directed mutagenesis is employed, using techniques standard in the art.
It will be appreciated that the term 'manipulated', 'manipulation' or grammatical variations thereof, refers to the alteration of genetic information in a plant or part thereof, by a number of suitable genetic techniques, including, but not limited to:
- introducing a nucleic acid molecule of interest to a cell; or
- mutagenesis techniques; and/or
- traditional plant breeding techniques (unless specifically excluded);
or a combination thereof. For examples, see Lanfranco, 2003; Tadege et al., 2005.
The term "introducing" (or grammatical variants thereof) when used in the context of inserting a nucleic acid molecule into a cell, means "transfection" or "transformation" or "transduction" and includes reference to the incorporation or transfer of a nucleic acid molecule into a eukaryotic or prokaryotic cell where the nucleic acid molecule may be incorporated into the genome of the cell (e.g. chromosome, plasmid, plastid, mitochondrial DNA), converted into an autonomous replicon, or transiently expressed (e.g. transfected mRNA).
The term "nucleic acid molecule" as used herein may be an RNA, cRNA, genomic DNA or cDNA molecule, and may be single-, double-, or triple- stranded. The nucleic acid molecule may also optionally comprise one or more synthetic, non- natural or altered nucleotide bases, or combinations thereof.
The term "transformation" as used herein refers to a process by which the genetic material carried by an individual cell is altered by incorporation of exogenous DNA into its genome.
The term "ortholog", "orthojogous gene", or "orthologous polypeptide" refers to a functionally equivalent yet distinct corresponding nucleotide or amino acid sequence that may be derived from another plant. In general, an ortholog may have a substantially identical nucleotide or amino acid sequence to the sequences of the present invention as set forth in the sequence listing. The term 'homolog' refers to a related gene from a different but related species. Thus, preferred embodiments of the present invention may have a number of advantages over the prior art which include one or more of the following:
- Increasing the number of oil bodies within a seed and/or the vegetative portions of a plant;
- Increasing the amount of oleosin/polyoleosin produced by a seed and/or vegetative portion of a plant;
- Providing seeds or vegetative portions of a plant which have an increased number of oil bodies therejn;
- Providing plants which produce oleosin/polyoleosin in the vegetative portions therein;
- Providing constructs and methods for producing oleosin/polyoleosin and/or
TAG in planta;
- Providing a mechanism to produce more stable oil bodies containing oleosin/polyoleosin in seeds;
- Providing a mechanism to produce oil bodies containing oleosin/polyoleosin in leaves.
- Providing plants which produce elevated levels of TAG synthesising enzyme in the vegetative portion of a plant.
- Providing plants which produce elevated levels of TAG in the vegetative portions of the plant.
- Providing an animal feed which has an elevated oleosin/polyoleosin to TAG ratio.
- Providing a plant or plant cell which produces elevated or decreased levels Of TAG.
BRIEF DESCRIPTION OF DRAWINGS
Further aspects of the present invention will become apparent from the following description which is given by way of example only and with reference to the accompanying drawings in which:
Figure 1 shows a coomassie gel and lmmunoblot of five Brassica oleraceae samples which have had oil body preps extracted from seed. All the samples were of 35S-white clover oleosin monomer;
Figure 2 shows an lmmunoblot of oil body preparations from seeds from independent Arabidopsis thaliana transformants containing 35S- sesame seed oleosin/polyoleosin ;
Figure 3 shows a DGAT1 nucleotide and translated amino acid sequence;
Figure 4 shows a DGAT2 nucleotide and translated amino acid sequence;
Figure 5 shows a PDAT nucleotide and translated amino acid sequence;
Figure 6 shows an SDS-PAGE/Coomassie gel (top panel) and lmmunoblot (bottom panel) of 3.5 day old ryegrass leaves over expressing Arabidopsis thaliana DGAT1. AtDS = Developing Seeds from Arabidopsis thaliana CoI; FN0107 line = ryegrass transgenic control containing 35S::GFP. Arrows indicate immunoreactive band of the expected size (59kDa). The indicated band in the AtDS control lane also correlated with the only immunoreactive band from microsomal preparations from the same sample. DGAT1 would be expected to be in the microsomal preparation as it is localised within the ER.;
Figure 7 shows a Nile Red (top panel) staining of ryegrass plants over expressing Arabidopsis thaliana DGAT1 and protein extracts (bottom panel) showing oil in water emusion from the two plants over expressing Arabidopsis thaliana DGAT1 ;
Figure 8 shows a SDS-PAGE/immunoblot of Arabidopsis thaliana leaves overexpressing sesame seed oleosin under the control of the CaMV35s promoter. pRShi = control plant transformed with empty vector, PSP1 lines = transgenic plants over expressing sesame seed oleosin under the control of the CaMV35s promoter. Arrow indicates immunoreactive band of the expected size;
Figure 9 shows an Influence of additional oleosin/polyoleosin accumulation on the thermal stability of oil bodies from Arabidopsis thaliana;
Figure 10 shows an over accumulation of oleosin in oil bodies (OBs) increases stability in rumen fluid. The top panel shows SDS-PAGE/lmmunoblot of oil body extracts from transgenic Arabidopsis seeds over expressing a synthetic sesame seed oleosin nucleotide sequence
(wild type plants showed no immunoreactive band at the appropriate size). Bottom panel shows the influence of additional oleosin on OB stability in rumen fluid where OB was measured by turbidity (OD6oo);
Figure 11 shows an expression of oleosin/polyoleosin and production of AOBs.
-ve = negative control, pET29 vector; 1 * - 6χ = relevant oleosin/polyoleosin (in pET29 expression vector); Ct = pET28 vector expressing 5OkDa 7WC protein. Although 70μg of insoluble protein was used in the preparation of the AOBs, the proportion of each oleosin/polyoleosin within that 70μg decreases with increasing repeat number (See AOB Coόmassie and immunoblot panels);
Figure 12. Stability of emulsions prepared with different oleosin/polyoleosin then incubated at 900C. Protein for AOBs sourced from: -ve = negative control, pET29 vector; Ct = pET28 vector expressing unrelated 5OkDa 7WC protein; 1 * - 6* = relevant oleosin/polyoleosin (in pET29 expression vector).
Figure 13 shows a graph of estimated relative emulsion turbidity when the emulsions were prepared with different oleosin/polyoleosin then incubated at 900C. Protein for AOBs sourced from: -ve = negative control, pET29 vector; Ct = pET28 vector expressing unrelated 5OkDa 7WC protein; 1 x - 6* = relevant oleosin/polyoleosin (in pET29 expression vector). The negative control (-ve,-«- ), control (Ct, •••■■• ) and 6χ oleosin/polyoleosin ( ••*. ) samples failed to produce a stable emulsion, with either poor emulsification, or breakdown of the emulsion occurring within 10min at 900C. All of the emulsions prepared with oleosin/polyoleosin showed a decrease in opacity after 5min incubation at 9O0C. The oleosin/polyoleosin emulsions with highest stability - 2* and 3χ - then appeared to stabilse, while the oleosin/polyoleosin emulsions with medium stability - 1 χ, 4χ and 5χ - stabilised after 10min. By 20min all of the emulsions had begun to dissipate, with the oleosin/polyoleosin emulsions with high stability dissipating slowest;
Figure 14 shows a microscopic analysis of AOB prepared with different oleosin/polyoleosin and incubated at 900C;
Figure 15 shows a Mean diameter of AOBs prepared with different oleosin/polyoleosin after incubation at 9O0C for 0, 20 and 60min;
Figure 16 shows a Microscopic analysis of AOBs prepared with varying amounts of oil and oleosin repeats;
Figure 17 shows a Heat stability at 9O0C of AOBs prepared with varying amounts of oil and oleosin repeats;
Figure 18 shows a Possible incomplete inclusion of polyoleosin in AOBs causes instability in 4χ, 5* and 6* oleosin/polyoleosin caused by insufficient disruption provided by sonication to allow the 6* oleosin/polyoleosin peptide fully denature and assemble with the AOB; and
Figure 19 shows a Microscopic analysis of AOB stability in rumen fluid. AOB stability decreased as the oleosin/TAG ratio decreased (seen by increase in AOB diameter as AOBs coalesce due to decreased oleosin present on the surface). The greatest AOB stability was shown with the oleosin and 4% TAG sample which only showed signs of aggregation and some coalescence after 60 minutes in rumen fluid. The negative control shows that the oil never forms a true oil body and the oil is coalescing into droplets immediately after sonication; after 60 minutes the sample is virtually clear of oil (panel A) and TAG was only present as large droplets (panel B) indicating no protection was afforded by the addition of a non oleosin control protein.
Figure 20 CaMV35S promoter nucleotide sequence and white clover oleosin nucleotide and translated amino acid sequence.
Figure 21 CaMV35S driving 1 sesame seed oleosin tandem repeat with the UBQ10 intron in the first repeat and translated amino acid sequence.
Figure 22 CaMV35S driving 3 sesame seed oleosin tandem repeats with the UBQ10 intron in the first repeat and translated amino acid sequence.
Figure 23 Arabidopsis oleosin promoter driving 1 sesame seed oleosin tandem repeat with the UBQ10 intron in the first repeat and translated amino acid sequence.
Figure 24 Arabidopsis oleosin promoter driving 3 sesame seed oleosin tandem repeats with the UBQ10 intron in the first repeat and translated amino acid sequence.
BRIEF DESCRIPTION OF SEQUENCE LISTING
Figure imgf000021_0001
Figure imgf000022_0001
BEST MODES FOR CARRYING OUT THE INVENTION
EXAMPLE 1: WHITE CLOVER OLEOSIN CONSTRUCTION
Generation of white clover oleosin plant binary vectors
We have cloned a white clover oleosin cDNA and placed this under the control of the constitutive promoter CaMV35s in a plant binary vector for plant transformation (Scott et al., 2007) Figure 20. We have cloned a white clover oleosin cDNA and placed this under the control of the Arabidopsis thaliana oleosin promoter in a plant binary vector for plant transformation (Scott et al., 2007). It should be noted that the oleosin sequence used is for example only. Any oleosin sequence or combinations of oleosins, steroleosins and caoleosins and oleosin linking sequences could be used.
EXAMPLE 2: SYNTHETIC SESAME SEED OLEOSIN AND POLYOLEOSIN CONSTRUCTION
We designed a synthetic sesame seed oleosin either as a single unit or as tandem repeats for expression in both E. coli as well as plants (e.g., Arabidopsis and Lotus). The original sesame seed oleosin nucleotide sequence and translated peptide sequence are from a sesame seed oleosin, GenBank clone AF091840. The codons were optimised for both E. coli and Arabidopsis expression. Each repeat used randomised degenerate codons to code for the specific amino acid sequence thus ensuring that the repeats will not be rearranged by non rec" bacteria such as Agrobacterium rhizogenes. The construct was designed so that it can be relatively simply sublconed from the original backbone (pUC57) into both pET29a and various plant binary vectors. In order to allow simple restriction digestion and re-ligation to reduce the number of repeats as well as to enable us to paste in future peptides . between the repeats we engineered restriction sites between them.
We have synthesised a nucleotide sequence encoding for a sesame seed oleosin and polyoleosin and placed these under the control of the constitutive promoter CaMV35s in a plant binary vector for plant transformation (Scott et al., 2007) Figures 21-22. We have a nucleotide sequence encoding for a sesame seed oleosin and polyoleosin and placed these under the control of the Arabidopsis thaliana oleosin promoter in a plant binary vector for plant transformation (Scott et al., 2007) Figures 23-24.
The design allows various numbers of tandem repeats to be easily transferred into pET29a and to perform simple digestions on the original clone to remove different numbers of inserts then transfer to binary vectors. This included a Ncol site on each end of the sesame oleosin/polyoleosin to place it into pET29a which gives the peptide an N-terminal S»Tag and thrombin cleavage site and a C-terminal His«Tag. For transfer to plant binary vectors we designed an attL1 site to the 5'end and an attl_2 site to the 3'end, these are compatible for with our GATEWAY constructs built in house.
Codon analysis
We compared the codon usage by both E. coli and Arabidopsis. From this we were able to identify codons that were not suitable for use in this construct; these included the following:
Arg AGG lie ATA
Arg AGA ' Leu CTA Arg CGG stop TAG
Arg CGA Arg CGC These codons were removed from the codon table; the remaining codons were placed in a table which randomised the possibilities still available for each amino acid. Thus, while the codon usage was randomised the peptide sequence for the sesame seed oleosin was conserved. The randomisation was repeated six times, one for each oleosin repeat. An alignment of these sequences showed that the homology dropped to approximately 75% between each repeat and the drop in homology was generally distributed evenly across the whole sequence.
Amino E.coli A.thaliana
Acid Acid Codon frequency frequency
GIy GGG 0.16 0.15
GIy GGA 0.12 0.37
GIy GGT 0.34 0.34
GIy GGC 0.38 0.14
GIu GAG 0.32 0.48
GIu GAA 0.68 0.52
Asp GAT 0.63 0.68
Asp GAC 0.37 0.32
VaI GTG 0.36 0.26
VaI GTA 0.16 0.15
VaI GTT 0.26 0.41
VaI GTC 0.22 0.19
Ala GCG . 0.34 0.14
Ala GCA 0.22 0.27
Ala GCT 0.17 0.44
Ala GCC 0.27 0.16
Arg AG^ PM 0.20
Arg A<5A. 0.35
Ser AGT 0.16 0.16
Ser AGC 0.27 0.13
Lys AAG 0.24 0.52
Lys AAA 0.76 0.48
Asn AAT 0.47 0.52
Asn AAC 0.53 0.48
Met ATG 1.00 1.00
He ATA 0.09 0.24 lie ATT 0.50 0.41
He ATC 0.41 0.35
Thr ACG 0.27 0.15
Thr ACA 0.15 0.30 Thr ACT 0.17 0.34
Thr ACC 0.41 0.20
Trp TGG 1.00 1.00
End TGA 0.32 0.43
Cys TGT 0.44 0.60
Cys TGC 0.56 0.40
End TAQ 0.08 0.20
End TAA 0.60 0.36
Tyr TAT 0.58 0.52
Tyr TAC 0.42 0.48
Leu TTG 0.13 0.22
Leu TTA 0 13 0.14
Phe TTT 0 58 0.51
Phe TTC 0.42 0 49
Ser TCG 0.15 0.10
Ser TCA 0 13 0 20
Ser TCT 0.15 0.28
Ser TCC 0.15 0 13
Figure imgf000025_0001
Arg C<?A 0,07 0.12
Arg CGT 0.36 0.17
Arg CGC 0.37 0,07
GIn CAG 0.66 0.44
GIn CAA 0.34 0.56
His CAT 0.58 061
His CAC 0.42 0.39
Leu CTG 0.48 0.11
Leu CTA 0.04 0.11
Leu CTT 0 11 0.26
Leu CTC 0.10 0.17
Pro CCG 0.50 0 18
Pro CCA 0.20 0.33
Pro CCT 0.17 0.38
Pro CCC 0.13 0.11
Table 1: Comparison of E. coli and A. thaliana codon usage.
Each number represents the proportion that codon is used to code for the respective amino acid. Codons in grey were not used in the polyoleosin construct since they coded for the respective amino acid less than 10% of the time in either organism. Codons in bold and underlined were removed to raise the GC content and to remove cryptic splice sites and mRNA degradation signals (ATTTA).
Selection and location of restriction sites between oleosin repeats
Restriction sites were inserted as linkers between the repeats. The sites we're chosen to allow the subcloning strategy detailed below; they also allowed for the generation of 8 amino acid linkers between each repeat to allow for free rotation etc. Linkers with undesirable codons were not used.
The multiple cloning sites of both pUC57 and pET29a allowed the design of a sub- cloning strategy using multiple placements of the following restriction sites within the polyoleosin construct.
Bst XI CIa I Pst l Nco I Nde I Not I Xho I
The randomised oleosin repeats were checked for these sites and alternative codons were then used to eliminate the sites when discovered.
Unique restriction sites
We also engineered unique Eco47 III, Dra I, MIu Nl, Sac I1 Sal I, Sea I, Hpa I, AIw 441 sites between different repeats. These have been included to allow future additions of peptides between the repeats.
Not I sites
Not I sites flank the ORF of the complete clone. This is to allow sub-cloning into pART binary vectors if necessary.
Optimisation for: Improving Translation Efficiency; Increasing RNA stability; Correct Splicing.
Tetranucleotide stop codon.
Brown et al., (1990) reported that there was an increasing number of reports where the tri-nucleotide stop codons do not signal the termination of protein synthesis; they found that the signals UAA(A/G) and UGA(A/G) are the preferred stop codons in eukaryotes. Hence we have added an A to the 3' end of the second stop codon (TGA) in our construct. mRNA degradation signal
Beelman and Parker (1995) reported the degradation signal ATTTA (AUUUA) can destabilize transcripts in plants as well as animals. The proposed construct ORF originally had 7 ATTTA sites. These were predominantly caused by the sequence coding for isoleucine followed by a tyrosine residue. The ATTTA sites were removed by changing the relevant isoleucine codons to ATC. Re-analysis of the splice sites after the removal of the ATTTA sites showed that fewer regions were predicted to be introns (partially determined by the GC content).
poly T
The original proposed construct ORF would have had 27 TTTT sites and 12 TTTTT sites.
To reduce the number of these regions the phenylalanine codon TTT was removed and replaced by TTC; in one case the site was eliminated by moving the engineered Dral site to the 5' end of the MIu NI site. Combined these changes reduced the number of TTTT sites to 14 and the number of TTTTT sites to 1.
Plant lntron Insertion
The insertion of a recognised plant intron into an expression construct frequently results in a significantly enhanced expression of the construct in planta; this is termed Intron Mediated Enhancement (Rose 2004 and references therein). The sequence and position of the intron is important in terms of expression enhancement with the highest gains obtained by placing the Arabidopsis thaliana ubiquitiniO (UBQ10) intron within the first 250 bases or so of the 5' end of the transcript (Rose 2004 and references therein). Rose and Beliakoff (2000) found that utilising a Pstl site was a useful way to insert introns. This was achieved by engineering a Pstl site to the 5' end of the intron and by modifying the existing 3' end of the intron to contain a Pstl site, from this they were able to add or delete functional introns wherever a Pstl site existed in the gene or cDNA.
Vector NTI identified approximately 4 Pstl sites within the proposed polyoleosin construct with the closest to the 5' end occurring approximately 500 bases downstream. All these sites were eliminated using various combinations of degenerate codons and a new Pstl site was engineered at position 300 using. the degenerate codons. This places the intron in the first oleosin repeat and therefore enables the generation of all truncated versions with the intron. Using the UBQ 10 intron sequence (Norris et al., 1993) we engineered the 3' end to include a Pst1 site.
The new polyoleosin construct (containing the intron) was then analysed by NetGene2 (Hebsgaard et al., 1996; Brunak et al., 1991, web site address http://www.cbs.dtu.dk/services/NetGene2/) to confirm that the engineered intron would be predicted to be spliced correctly. This analysis revealed that not only would the UBQ10 be spliced out correctly but there were also high confidence cryptic donor and acceptor sites that would likely result in aberrant splicing. The putative cryptic splice sites were either eliminated where ever possible or reduced in confidence by using alternative redundant codons. The analysis was repeated and showed that the only high confidence donor and acceptor sites remaining were flanking the engineered UBQ10 intron (NetGene 2 results of both the polyoleosin prior to cryptic splice site removal and polyoleosin with intron and cryptic splice sites removed are shown below); it was predicted that the splicing would remove only the intron and would leave the construct in frame. The analysis showed that a number of regions did not appear to be coding regions and as such may be susceptible to some aberrant splicing. To further reduce the possibility of cryptic splicing we then modified the GC content of the construct (see GC content below).
GC content.
Oleosins with optimised and randomised codons; no ATTTA sites or TTT were still found to have relatively low GC content compared to the original sequence (see table). To increase the GC content the additional codons were removed: ATT, AAT, TTA, CTT. This raised the GC content to close to the original content.
The repeats were linked using the previously engineered linking regions. These sequences were modified to remove all but the first Pst I sites in the first oleosin repeat and the removal of an Xho site in the second oleosin repeat. In our construct the ORF has no ATTTA or TTTT sites. Furthermore, when the sequence was re-analysed by NetGene2 the only predicted intron splice site in the ORF was the UBQ10 intron engineered into the Pstl site and the % identity of the repeats increased from an average of 74.8% identical to 79.1% identical. NetGene2 was used to predict the splicing of the proposed construct. The results indicated that the RNA should only be spliced at the acceptor and donor sites of the UBQ10 intron.
Generation of Sesame seed oleosin and polyoleosin plant binary vectors
We have synthesized a sesame seed oleosin/polyoleosin with intron and placed this under the control of the constitutive promoter CaMV35s in a plant binary vector for plant transformation (Figures 21-22). We have synthesized a sesame seed oleosin/polyoleosin with intron and placed this under the control of the Arabadopsis thaliana oleosin/polyoleosin promoter in a plant binary vector for plant transformation (Figures 23-24). It should be noted that the oleosin/polyoleosin sequence used is for example only. Any oleosin/polyoleosin sequence or combinations of oleosin/polyoleosins, steroleosin/polyoleosins and caoleosin/polyoleosins and oleosin/polyoleosin linking sequences could be used. The coding sequence of the complete ORF (after splicing) was then checked against a heptameric repeat of the original oleosin/polyoleosin translated sequence and found to be identical over the oleosin/polyoleosin coding regions.
EXAMPLE 3: ENHANCEMENT OF OLEOSIN AND POLYOLEOSIN PRODUCTION IN THE SEEDS
Brassica oleracea plant transformation and analysis
The white clover oleosin and polyoleosin constructs were transformed into fast cycling Brassica oleracea plants (using Agrobacterium mediated transformation).
T1 seed was received and 6 seeds per plant line were germinated. Seedlings were tested for Basta resistance, all resistant plants were potted and one susceptible plant was retained per line (used to generate a WT control). Plants were allowed to self pollinate and set seed, then seed was collected and cleaned up.
Crude oil body preps were prepared by grinding 200mg seed with a spatula tip of sand and 750 μl extraction buffer (10 mM Phosphate buffer, pH 7.5 containing 600 mM sucrose) in a mortar and pestle. A further 750 μl extraction buffer was added and the slurry transferred to an eppendorf tube. The sample was centrifuged 5 min at 14,000rpm then the aqueous layer removed to a new tube using a thin gel loading tip. The oil layer (any material remaining attached to the side of the tube) was resuspended with extraction buffer, and removed to a new tube where the volume was made up to the 500 ϋl mark on the side of the 2ml eppendorf tube. Samples of aqueous and oil layers were removed and added to an equal volume of 2 x loading buffer, mixed and boiled 5 mins.
Western Blot Analysis was carried out on the T2 seed samples, except that the white clover oleosin antibody was used as primary antibody. This antibody was raised against the N-terminal hydrophilic portion of the white clover oleosin protein. The positive control for these samples was an oil body prep extracted from white clover (Trifolium repens Huia C19739) seed. The negative control was an oil body prep from seed of a Gus-expressing plant (GH#23664 Tube43, containing At Oleosin promoter-Gus construct, tested +ve for Gus in seed) (Figure 1).
Construction of synthetic sesame seed oleosin and polyoelosin constructs for prokaryotic and in planta expression, generation of polyclonal antibodies to sesame seed oleosin, culture and induction of expression system, preparation of artificial oil bodies (AOBs), transformation of Arabidopsis thaliana with oleosin and polyoleosin constructs under the control of the CaMV35s construct or the Arabidopsis oleosin seed promoter, transformation of Arabidopsis thaliana var Columbia with oleosin and polyoleosin binary constructs, analyses of T2 seeds for polyoleosin, immunoblot analysis of Arabidopsis thaliana oil bodies containing sesame seed oleosin was performed as described previously (Scott et al., 2007).
25 mg of Arabidopsis seed was ground in 300 μl extraction buffer (10 mM Phosphate buffer, pH 7.5 containing 600 mM sucrose) using a Wiggenhauser D- 130 Homogenizer. Seed was ground until crushed and the sample appeared "creamy" and frothy as starch was released from the seeds. The homogenizer tip was rinsed in 1 ml buffer and this volume was added to the crushed seed. Samples were prepared up to this point in lots of 4, then centrifuged 14,000rpm for 5 mins. A thin gel loading tip was used to gently push the oil layer to the side of the tube, and the aqueous layer removed to a fresh tube. The oil layer was resuspended from the side of the tube using extraction buffer and placed in a fresh 2 ml tube. The final volume was made up to 0.5 ml (as read on the side of the tube) with extraction buffer. Oil body preparation was added to an equal volume of 2 x gel loading buffer and boiled 5 mins before loading on to gel. Samples were run either on duplicate pre-cast NύPAGE Novex 4-12% Bis-Tris Midi Gel (Invitrogen) on the Criterion gel rig system (Bio-Rad), or on hand-cast Tris-HCI gels. One gel was stained by SafeStain (Invitrogen) to show total protein loaded and the other was blotted onto Nitrocellulose membrane using the iBlot system (Invitrogen). In each case, the negative control was a sample extracted from wild type Columbia seed and the positive control was the same extraction method (although grinding was by mortar and pestle) performed on wild type sesame seed. 10μl of each sample and the negative control were loaded onto the gel, and 5μl was used for the positive control.
Following blotting, the membrane was blocked in a solution of 12.5% skim milk powder in TBST (50 mM Tris pH 7.4, 100 mM NaCI, 0.2 % Tween) for at least 1.5 hours. The membrane was then washed in TBST 3 x 5 mins before incubating with primary antibody (anti-sesame) at 1/1000 in TBST for 1 hour at room temperature. Following 3 further TBST washes, incubation with secondary antibody (anti-rabbit) at 1/5000 was carried out for 1 hour at room temperature. The membrane underwent 3 further washes then the signal was developed using standard chemiluminesence protocol. Figure 2 shows the accumulation of single and tandem repeat sesame seed oleosin units in the seed under the control of the CaMV35S promoter. It can be seen that recombinant oleosin and polyoleosin was found to accumulate in the seeds of Arabidopsis thaliana and was correctly targeted to the oil bodies (Figure 2).
EXAMPLE 4: PRODUCTION OF TRIACYLGLYCEROL IN THE VEGETATIVE PORTIONS OF THE PLANT
In most plants (including Lolium perenne) the majority of leaf lipids are attached to a glycerol backbone and exist as diacylglycerols. These are incorporated into lipid bi- layers where they function as membranes of multiple sub-cellular organelles or the as the membrane of the cell itself. The majority of lipid bilayer in the leaf is the chloroplast thylakoid membrane. A smaller amount of leaf lipid exists as epicuticular waxes and an even smaller percentage is present in the form of triacylglycerol (TAG).
Most plants synthesise and store TAG in developing embryos and pollen cells where it is subsequently utilised to provide catabolizable energy during germination and pollen tube growth. Dicotyledonous plants can accumulate up to approximately 60% of their seed weight as TAG. Ordinarily, this level is considerably lower in the monocotyledonous seeds where the main form of energy storage is carbohydrates (e.g., starch)The only committed step in TAG biosynthesis is the last one, i.e., the addition of a third fatty acid to an existing diacylglycerol, thus generating TAG. In plants this step is performed by one of three enzymes including: acyl CoA:diacylglycerol acyltransferase (DGAT1), Figure 3; an unrelated acyl CoA:diacyIglycerol acyl transferase (DGAT2), Figure 4; and phospholipididiacylglycerol acyltransferase (PDAT), Figure 5 (Zou et al., 1999; Bouvier-Nave et al., 2000; Dahlqvist et al., 2000; Lardizabal et al., 2001). Over expression of the transcribed region of any of these genes in the vegetative portions of plants leads to the formation of TAG droplets in the cytoplasm of leaf cells, as demonstrated by the over expression of: Arabidopsis DGAT1 in tobacco by Bouvier- Nave et al., (2000); Tung tree DGAT2 in yeast and tobacco by Shockey et al., (2006); Arabidopsis PDAT in Arabidopsis by Stahl et al., (2004) Arabidopsis DGAT 1 in Lotus japonicus hairy roots (Bryan et al., 2004).
Production of TAG in Lolium perenne Leaves by Over Expressing Arabidopsis thaliana DGAT1.
Sub-cloning Arabidopsis thaliana DGAT1 cDNA and cloning Arabidopsis thaliana DGAT1 genomic transcribed region; transformation of Lolium perenne by microprojectile bombardment of embryogenic callus and microprojectile bombardment of Lolium perenne with the Bio-Rad Particle Delivery System (PDS- 1000/He) was performed as per Bryan et al., (2007)
Analysis of Loiium perenne Leaves Over Expressing Arabidopsis thaliana DGAT1 by SDS-PAGE/lmmunoblot, Nile Red Staining and FAMES GC/MS.
Total soluble protein from leaves from hygromycin plants were analysed for the presence of the Arabidopsis thaliana DGAT1 recombinant protein using SDS- PAGE/immunoblot. Polyclonal antisera generated against prokaryotically expressed Arabidopsis thaliana DGAT1 identified two plants that accumulated detectable levels of recombinant protein (Figure 6). Ryegrass leaf blade was harvested at 3.5 days after cutting back; pproximately 100 mg fresh leaf were homogenized in 400 ml grinding buffer containing 50 mM Tris-HCI pH8, 5mM EDTA pH8, 0.4% (v/v) b-Mercaptoethanol, and 1 mM PMSF using acid sterile sand. Transfer plant slurry to new 1.5mL micro-centrifuge tubes, and 150μl of 4x sample loading buffer (20OmM Tris-HCI pH6.8, 40% Glycerol, 4% (w/v) SDS, 4% (v/v) b- Mercaptoethanol, and a spatula tip of Bromophenol blue) were added, then the samples were boiled for 10min. Protein extracts were centrifuged at 40C, 14,000 rpm for 5 min. Total soluble proteins (TSP) were transferred to the new eppendorf tubes ands ubsequently loaded on SDS-PAGE for further Comassie staining and Immunoblotting. 5μL of TSP was loaded for Comassie staining and 25μL of TSP was loaded for Immunoblotting.
Two ryegrass lines (FU0806 and FU 1103) were found to accumulate an immunoreactive band of the expected size (Figure 6); these plants and control were analysed for lipid accumulation by staining with Nile Red which is an excellent vital stain for the detection of intracellular lipid droplets by fluorescence microscopy (Greenspan et al., 1985). It can be seen that the two plants found to accumulate recombinant Arabidopsis thaliana DGAT1 also demonstrated considerably higher accumulation of intracellular lipid droplets and formed an oil in water emulsion upon extraction of soluble proteins (Figure 7). FAMES GC/MS was also used to analyse transgenic ryegrass plants, the results are presented semi-quantitatively in Table 2.
Figure imgf000033_0001
Table 2. Total lipid content (GC/MS trace peak area/mg of fresh weight) of transgenic ryegrass leaves overexpressing Arabidopsis thaliana DGAT1.
EXAMPLE 5: PRODUCTION OF OLEOSIN/POLYOLEOSIN IN THE LEAVES OF ARABIDOPSIS THALIANA
Construction of synthetic sesame seed oleosin construct for prokaryotic and in planta expression, generation of polyclonal antibodies to sesame seed oleosin, culture and induction of expression system, preparation of artificial oil bodies (AOBs), transformation of Arabidopsis thaliana with polyoleosin constructs under the control of the CaMV35s construct or the Arabidopsis oleosin seed promoter, transformation of Arabidopsis thaliana var Columbia with Polyoleosin binary constructs, analyses of T2 seeds for polyoleosin, immunoblot analysis of Arabidopsis thaliana oil bodies containing sesame seed oleosin was performed as described previously (Scott et al., 2007). Leaves were sampled from plants over expressing the single sesame seed oleosin construct and analysed by SDS- PAGE/immunoblot using the polyclonal anti-sesame seed oleosin antisera. It can be seen that recombinant oleosin was found to accumulate in the leaves of Arabidopsis thaliana leaves (Figure 8). This used approximately 3 fully mature leaves of Arabidopsis growing in the potted soil or 100 mg of leaves harvested from Arabidopsis seedlings germinated on plant medium containing 1/2x MS with 1 % sucrose (w/v). This was homogenized with 300 ml grinding buffer and added 100 mL of 4x sample loading buffer to the plant slurry and 7.5μl loaded on SDS-PAGE and Comassie stained while 30μl was loaded on SDS-PAGE and lmmunoblotted with the sesame oleosin antibody.
The simultaneous expression and accumulation of oleosin/polyoleosin protein in the same cell (for example leaf cell) will result in the production of triglyceride oil bodies encapsulated by a phospholipid monolayer embedded with oleosin; this has been demonstrated in yeast (Ting et al., 1997) and seeds (Abell et al., 2004).
EXAMPLE 6: INCREASED SEED OIL BODY THERMAL STABILITY DUE TO INCREASED OLEOSIN/POLYOLEOSIN LEVELS
Oil body preparations were made from Arabidopsis wild type seeds and seeds accumulating recombinant sesame seed oleosin and polyoleosin were subjected to 9O0C for 24hr, it can be seen that the oil body preparations made from seeds accumulating recombinant sesame seed oleosin/polyoleosin were more stable than those made from wild type seeds accumulating wild type levels of oleosin, this is seen by the thicker emulsification layer correlating with increased oleosin and increasing oleosin repeat number (Figure 9). In addition, increasing the number of oleosin units increased the thermal stability.
EXAMPLE 7: INCREASED SEED OIL BODY STABILITY IN RUMEN FLUID DUE TO INCREASED OLEOSIN/POLYOLEOSIN LEVELS
Oil bodies were extracted from the seeds of four Arabidopsis lines expressing recombinant sesame seed single oleosin constructs and the level of oleosin expression determined by immunoblot (Figure 10). Oil bodies were extracted using the homogeniser from 25mg seed, in a final volume approximately 500μL and stored at 40C overnight. The preparations were re-mixed and an aliquot added to an equal volume (75μL) of rumen fluid. Samples were incubated at 39°C without shaking; samples were vortexed each time before an aliquot was removed at each time point (0, 0.5, 1 , 2, 4, and 6h). The different lines expressed oleosin at different levels and corresponded to line 61<47<48<65 in ascending order. Oil bodies were extracted from these seeds as well as wild type seeds and incubated with clarified rumen fluid. Aliquots were removed during the digestion incubation and the relative number of intact oil bodies was monitored by measuring turbidity (OD600) (Figure 10). It can be seen that increasing amounts of oleosin in the oil bodies increased their stability in rumen fluid where the stability is shown in ascending order from WT=61«48<47<65.
EXAMPLE 9: INCREASED ARTIFICIAL OIL BODY STABILITY IN RUMEN FLUID DUE TO INCREASED OLEOSIN /POLYOLEOSIN LEVELS
Expression of recombinant oleosin/polyoleosin and preparation of Artificial Oil Bodies (AOBs)
A fresh 1OmL culture (pET29 [Novagen] vector containing a oleosin/polyoleosin sequence, within E. coli BL21 Rosetta-Gami) was grown at 37°C with shaking (180-200rpm) until OD60O * 0.5 - 0.7 (~120min). Recombinant protein expression was induced by the addition of IPTG to 1 mM final concentration. The induced culture was incubated at 37°C with shaking (180-200rpm) for a further 2 - 3h. 1000μL aliquots of the culture were transferred to 1.5mL microfuge tubes and the cells pelleted by centrifugation at 2655*g for 5miή at 4°C. The supernatant was discarded and the cell pellet immediately used for subsequent steps or stored at -200C until required.
Each cell pellet was resuspend in 1000μL Oilbody Buffer (5OmM NaPO4 pHδ.O, 10OmM NaCI) and sonicated (Sonics & Materials Vibra-Cell VC600, 600W, 2OkHz; 1/8" tapered micro-tip probe) off/on ice four times using the following settings - Pulse 100, Time 10, Power 4.
Insoluble protein was pelleted by centrifugation at 20,817*g for 10min at 40C. The supernatant was discarded and 500μL Oilbody Buffer was added to the pellet, which was briefly sonicated to resuspend the insoluble protein pellet (Pulse 100, Time 10, Power 4). Small aliquots of the resuspended pellet were removed for protein concentration determination (using Bio-Rad Protein Dye). A maximum of • 500μl_ of the resuspended pellet was transferred to a fresh 1.5mL microfuge tube, ensuring that the amount of protein in each tube was the same then made up to 1000μL with Oilbody Buffer.
A 40μL aliquot of Purified Sesame Oil (ether extracted oil from sesame seed flour) was added to each tube and sonicated off/on ice four times using the following settings - Pulse 100, Time 10, Power 4. The Artificial Oil Bodies (AOBs) that had formed during the sonication of the insoluble protein, comprised mostly of recombinant oleosin or polyoleosin, and oil mix was compacted into a floating layer by centrifugation at 20,817*g for 10min at 4°C. The AOBs were recovered by tilting the tube on its side and removing the lower aqueous phase and any pelleted particulates from beneath the AOB layer. The AOBs were resuspended in 1000μL Oilbody Buffer.
Total protein, pellets and AOBs were analysed by SDS-PAGE/Coomassie and immunoblot, each polyoleosin was expressed, however, the total quantity of recombinant oleosin decreased with an increase in oleosin repeat number; consequently there was proportionally less recombinant oleosin in the AOBs generated using the longer polyoleosin chains (Figure 11).
Analysis of heat stability
A 100μl_ aliquot of each of the resuspended oleosin/polyoleosin AOBs (containing 70μg total protein), was transferred into a PCR tube. The tubes were incubated at 9O0C in a PCR machine without agitation or centrifugation. A time course assessment of heat stability of the AOBs was conducted. Images of the emulsion were captured after 0, 5, 10, 15, 20, 30 and 60min incubation (Figure 12). Using these images the relative turbidity (an approximation of emulsion stability) of the emulsions was estimated visually and graphed (Figure 13). Aliquots of the AOBs were also analysed by microscopic examination after 0, 20 and 60min incubation. 1 μL aliquots of each sample were pipetted onto a glass slide and photographed for comparison (Figure 14). The diameters of randomly selected micelles were also determined (Figure 15) using imaging software (Olympus Soft Imaging Solutions GmbH, Germany).
For AOBs prepared using single oleosin or 6 oleosin repeats, as the duration of incubation at 900C increased, so did the mean diameter of the AOBs (Figure 15). Although the diameters of the AOBs prepared with p29 actually decreased, this was likely caused by the larger AOBs having coalesced to form oil micelles large enough to float to the top of the tube. It appears that AOBs prepared using
3χ oleosin/polyoleosin are the most stable, as they did not coalesce or aggregate even after incubation at 900C for 1h. The 6* oleosin/polyoleosin seems to be the most unstable at high temperature and then 1 χ oleosin/polyoleosin, in comparison the 2x, 3x, 4x and 5x polyoleosin AOBs showed very little change in diameter over time at 900C (Figure 15). . ..
3* oleosin/polyoleosin appeared to be the most heat stable, as indicated by the diameter of oil bodies which were less than 2.0μm even after incubation at high temperature for 1 h. Mean diameter of AOB prepared using 6* oleosin/polyoleosin after incubation at 90°C for 1h averaged to 8.2μm, indicating less stability.
Effects of percentage of oil used during preparation on AOB physical properties
Do increased numbers of oleosin units require more oil to form AOBs (i.e. provide the surface area to fit the polyoleosin peptides).
To increase the amount of oil encapsulated by the oleosin/polyoleosin within a micelle, additional oil was added to pre-prepared AOBs and sonicated to incorporate the additional oil. Three 100μl_ aliquots of AOBs diluted for equal protein concentration were transferred into 1.5mL microfuge tubes, and OμL, 40μL, and 120μl_ of purified sesame oil was added to the relevant tubes. This provided final concentrations of 4%, 8% and 16% v/v, respectively. Oilbody Buffer was added to bring the final volume up to 1000μL. The mix was sonicated four times using the following settings - Pulse 100, Time 10, Power 4. Aliquots were removed for microscopic observation (Figure 16) and heat stability analysis (Figure 17).
The number of oleosin units in a oleosin/polyoleosin peptide influences AOB stability
The results from Figures 12-17 indicate that emulsions of AOBs prepared with the 2* and 3* oleosin/polyoleosin are more stable than those prepared with 4* and 5χ oleosin/polyoleosin, which are in turn more stable than those prepared with 1 * and 6* oleosin/polyoleosin (2* & 3χ > 4χ & 5χ > 1 * & 6χ). An explanation for the lower stability of the larger oleosin/polyoleosin is that firstly there is less polyoleosin protein (seen from Figure 11 ) and secondly the oleosin/polyoleosin may not be fully incorporated into the AOBs thus assuming incorrect topologies in the oil micelle (Figure 18).
It can be expected that with increasing numbers of oleosin units requires more energy to separate the increasing number of hydrophobic regions from one another in an inclusion body. Therefore, not all of the central hydrophobic regions in the larger oleosin/polyoleosin peptides would be available to become incorporated into the oil micelles during the preparation of the AOBs (Figure 18). The greater the ratio of non-incorporated hydrophobic regions to incorporated hydrophobic regions, the greater the disruptive tension perpendicular to the micelle surface, compared to the binding tension parallel to the surface. Increasing the amount of sonication energy used to form an emulsion from 6* polyolebsin may offer a means of generating emulsions more stable than those seen thus far with the 3* oleosin/polyoleosin emulsions. The incorporation of the hydrophobic regions into the micelle can also be used to explain why the degree of stabilisation offered by the 1 x oleosin/polyoleosin is not as great as that seen with the majority of the longer oleosin/polyoleosin. The single oleosin unit lacks a secondary anchoring point in the form of another embedded hydophobic region, and the steric hindrance is overcome by the proximity of nearby micelles and is thus unable to prevent coalescence.
Higher ratios of oleosin :TAG increase the stability of AOBs in rumen fluid
AOBs with a constant amount of recombinant oleosin were generated with 4, 8 and 18% TAG. These were incubated in 1/2x rumen fluid at 39°C and analysed by microscope at various time points. AOB stability decreased as the oleosin/TAG ratio decreased (seen by increase in AOB diameter as AOBs coalesce due to decreased oleosin present on the surface) (Figure 19). The greatest AOB stability was shown with the oleosin and 4% TAG sample which only showed signs of aggregation and some coalescence after 60 minutes in rumen fluid. The negative control shows that the oil never forms a true oil body and the oil is coalescing into droplets immediately after sonication; after 60 minutes the sample is virtually clear of oil (Figure 19, Panel A) and TAG was only present as large droplets (Figure 19, Panel B) indicating no protection was afforded by the addition of a non oleosin control protein.
Aspects of the present invention have been described by way of example only and it should be appreciated that modifications and additions may be made thereto without departing from the scope thereof as defined in the appended claims.
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Claims

1. A construct which includes:
a) at least one promoter;
b) • a nucleic acid molecule encoding an oleosin/polyoleosin protein; and
c) at least one nucleic acid molecule encoding an triacylglycerol biosynthetic enzyme (TAG synthesising enzyme);
wherein the promoter(s) are operatively linked to the nucleic acid molecules so as to cause expression of oleosin/polyoleosin and at least one TAG synthesising enzyme .
2. The construct as claimed in claim 1 , wherein the nucleic acid molecule encoding the oleosin/polyoleosin protein has a nucleotide sequence selected from:
a) SEQ ID NO's 1 , 3, 5, 7 or 9 or other nucleic acid molecules encoding an oleosin/polyoleosin gene;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b);
d) a homolog or an ortholog of a sequence in a), b), or c); or
e) a series of fused head to tail tandem repeats of sequences in a), b), c), or d).
3. The construct as claimed in claim 1 , wherein the nucleic acid molecule encoding the TAG synthesising enzyme has a nucleotide sequence selected from:
a) SEQ ID NO's 11, 13 or 15 other nucleic acid molecules encoding TAG synthesising enzymes;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b); or
d) a homolog or an ortholog of a sequence in a), b), or c); . e) an antisense sequence to a RNA sequence obtained from a sequence in a), b), c) or d).
4. The construct as claimed in anyone of the above claims, wherein the TAG synthesising enzymes are any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant or plant cell.
5. The construct as claimed in anyone of the above claims, wherein the TAG synthesising enzymes are selected from one of the following; acyl CoA: diacylglycerol acyltransferase (DGAT1); acyl CoA: diacylglycerol acyl transferase (DGAT2); or phospholipid: diacylglycerol acyltransferase (PDAT).
6. The construct as claimed in anyone of the above claims, wherein there is at least one TAG synthesising enzyme is present within the construct.
7. The construct as claimed in anyone of the above claims, wherein there are more than TAG synthesising enzyme is present within the construct.
8. The construct as claimed in anyone of the above claims, wherein the oleosin/polyoleosin gene and/or the TAG synthesising enzymes are selected from either monocot or dicot plant species.
9. The construct as claimed in claim 8, wherein the monocot plant species are selected from one of the following; grasses from the genera Lolium, Festuca, Paspalum, Pennisetum, Panicum and other forage and turfgrasses, corn, rice, sugarcane, oat, wheat and barley.
10. The construct as claimed in claim 8, wherein the dicotyledons plant species are selected from one of the following: Arabidopsis, tobacco, soybean, canola, cotton, potato, chickpea, medics, white clover, red clover, subterranean clover, alfalfa, eucalyptus, poplar, hybrid aspen, and gymnosperms, for example, pine tree.
11. Use of at least one construct which includes a nucleic acid molecule encoding oleosin/polyoleosin to increase the ratio of oleosin/polyoleosin to TAG within a seed.
12. A use of at least one construct to produce oleosin/polyoleosin and TAG synthesising enzymes in the vegetative portions of a plant.
13. The use of at least construct as claimed in any one of claims 11 or 12, wherein the construct includes:
a) at least one promoter;
b) a nucleic acid molecule encoding an oleosin/polyoleosin protein; ahd
c) at least one nucleic acid molecule encoding an triacylglycerol biosynthetic enzyme (TAG synthesising enzyme);
wherein the promoter(s) are operatively linked to cause expression of oleosin/polyoleosin and TAG synthesising enzyme .
14. The use of a construct as claimed in claim 13, wherein the nucleic acid molecule encoding the oleosin/polyoleosin protein has a nucleotide sequence selected from:
a) SEQ ID NO's 1 , 3, 5, 7 or 9 or other nucleic acid molecules encoding an oleosin/polyoleosin gene;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b);
d) a homolog or an ortholog of a sequence in a), b), or c); or
e) a series of fused head to tail tandem repeats of sequences in a), b), c), or d).
15. The construct as claimed in claim 13, wherein the nucleic acid molecule encoding the TAG synthesising enzyme has a nucleotide sequence selected from:
a) SEQ ID NO's 11 , 13 or 15 or other nucleic acid molecules encoding TAG synthesising enzymes;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b); or
d) a homolog or an ortholog of a sequence in a), b), or c); .
e) an antisense sequence to a RNA sequence obtained from a sequence in a), b), c) or d).
16. The use of a construct as claimed in anyone of claims 11 to 15, wherein the TAG synthesising enzymes is any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant or plant cell.
17. The use of a construct as claimed in anyone of claims 11 to 16, wherein the TAG synthesising enzymes are selected from one of the following; acyl CoA: diacylglycerol acyltransferase (DGAT1); acyl CoA: diacylglycerol acyl transferase (DGAT2); or phospholipid: diacylglycerol acyltransferase (PDAT).
18. The use of a construct as claimed in anyone of claims 11 to 17, wherein there is at least one TAG synthesising enzyme is present within the construct.
19. The use of a construct as claimed in anyone of claims 11 to 18, wherein there are more than TAG synthesising enzyme is present within the construct.
20. The use of a construct as claimed in anyone of claims 11 to 20, wherein the oleosin/polyoleosin gene and/or the TAG synthesising enzymes are selected from either; monocots, dicots, or gymnosperms plant species.
21. The use of a construct as claimed in claim 20, monocot plant species are selected from one of the following; grasses from the genera Lolium, Festuca, Paspalum, Pennisetum, Panicum and other forage and turfgrasses, corn, rice, sugarcane, oat, wheat and barley.
22. The use of a construct as claimed in claim 20, wherein the dicotyledons monocot plant species are selected from one of the following; Arabidopsis, tobacco, soybean, canola, cotton, potato, chickpea, medics, white clover, red clover, subterranean clover, alfalfa, eucalyptus, poplar, hybrid aspen, and gymnosperms, for example, pine tree.
23. An isolated nucleic acid molecule encoding an oleosin/polyoleosin protein having a nucleotide sequence selected from:
a) SEQ ID NO's 1 , 3, 5, 7 or 9 or other nucleic acid molecules encoding an oleosin/polyoleosin gene;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b); d) a homolog or an ortholog of a sequence in a), b), or c); or
e) a series of fused head to tail tandem repeats of sequences in a), b), c), or d).
24. An isolated nucleic acid molecule encoding a TAG synthesising enzyme 'having a nucleotide sequence selected from:
a) SEQ ID NO's 11 , 13 or 15, or other nucleic acid molecules encoding TAG synthesising enzymes;
b) a complement of a sequence in a);
c) a functional fragment or variant of a sequence in a) or b); or
d) a homolog or an ortholog of a sequence in a), b), or c);
e) an antisense sequence to. a RNA sequence obtained from a sequence in a), b), c) or d).
25. The isolated nucleic acid molecule as claimed in claim 24, wherein the TAG synthesising enzymes is any enzyme required to add the third fatty acid to an existing diacylglycerol and generate TAG within a plant and plant cell.
26. The isolated nucleic acid molecule as claimed in any one of claims 24 or 25, wherein the TAG synthesising enzymes are selected from one of the following; acyl CoA: diacylglycerol acyltransferase (DGAT1); acyl CoA: diacylglycerol acyl transferase (DGAT2); or phospholipid: diacylglycerol acyltransferase (PDAT).
27. The isolated nucleic acid molecule as claimed in anyone of claims 23 to 26, wherein the oleosin/polyoleosin gene and/or the TAG synthesising enzymes are selected from either; monocots, dicots, or gymnosperms plant species.
28. The isolated nucleic acid molecule as claimed in claim 27, wherein the monocot plant species are selected from one of the following; grasses from the genera Lolium, Festuca, Paspalum, Pennisetum, Panicum and other forage and turfgrasses, corn, rice, sugarcane, oat, wheat and barley.
29. The isolated nucleic acid molecule as claimed in claim 27, wherein the dicotyledons plant species are selected from one of the following; Arabidopsis, tobacco, soybean, canola, cotton, potato, chickpea, medics, white clover, red clover, subterranean clover, alfalfa, eucalyptus, poplar, hybrid aspen, and gymnosperms, for example, pine tree
30. A method of increasing the ratio of oleosin/polyoleosin to TAG within a plant seed comprising a step of manipulating the genome of a plant such that the seeds of said plant express more oleosin/polyoleosin than a corresponding wild-type seed.
31. A method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, comprising the step of manipulating the genome of a plant so as to express more oleosin/polyoleosin and TAG synthesising enzyme in the vegetation portions than a corresponding wild-type plant.
32. The method as claimed in claims 30 or 31 , wherein the step of manipulating the genome does not include traditional selective breeding techniques.
33. A method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, including the steps of:
a) genetically manipulating the plant to produce oleosin/polyoleosin in the vegetative portion of the plant; and
b) genetically manipulating the plant to produce TAG synthesising enzyme in the vegetative portion of the plant.
34. The method as claimed in claim 33, wherein there is a further step (c) which is the step of: measuring oleosin/polyoleosin and TAG in manipulated plants to find plants with a higher oleosin/polyoleosin to TAG ratio in the vegetative portion of the plant.
35. A method of producing oleosin/polyoleosin and TAG synthesising enzyme within vegetative portions of a plant, including the steps of:
a) genetically manipulating a first plant to produce oleosin/polyoleosin in the vegetative portion of the plant;
b) genetically manipulating a second plant to produce TAG synthesising enzyme in the vegetative portion of the plant.
36. A method of producing oleosin/polyoleosin and TAG synthesising enzyme as claimed in claim 35, wherein there is a further step (c) which is the step of: measuring the levels of:
i) oleosin/polyoleosin in the first plant; and
ii) TAG in the vegetative portions of the second plant;
to find a pair of plants, wherein the first plant produces sufficient levels of oleosin/polyoleosin relative to the amount of TAG synthesising enzyme produced in the second plant to produce oil bodies encapsulating TAG which are capable of protecting and/or delaying degradation or biohydrogenation of the TAG within the stomach or rumen of an animal.
37. A method of producing oleosin/polyoleosin and TAG synthesising enzyme as claimed in claim 36, wherein there is a further step (d) which is the step of: crossing the first and second plants to produce a plant expressing oleosin/polyoleosin and TAG synthesising enzyme.
38. The method as claimed in any one of claims 31 to 37, wherein the vegetative portions of the plant are one of the following; the shoots, leaves, fruit, bark, pods, roots, nodules, flowers, stems and the like, or parts thereof.
39. The method as claimed in any one of claims 31 to 38, wherein the vegetative portions of the plant are the leaves.
40. An animal feed which includes seeds and/or vegetative portions of plants, which have been manipulated to have elevated levels of oleosin/polyolesin and/or TAG compared to the corresponding wild type seed or plant.
41. An animal feed which includes seeds which have been manipulated to have elevated oleosin/polyoleosin content compared to the corresponding wild type seeds.
42. An animal feed which includes a vegetative portion of a plant which has been manipulated to have elevated oleosin/polyoleosin to TAG content compared to the vegetative part of a corresponding wild type plants.
43. An animal feed which includes a seed and vegetative portion of a plant wherein the collective ratio of oleosin/polyolesin to TAG is capable of protecting oil bodies in the rumen of an animal.
44. A plant which has been manipulated to produce TAG synthetic enzymes in the vegetative portions of the plants.
45. A plant or plant cell which has been transformed with a construct which includes:
- at least one promoter;
- a nucleic acid molecule encoding at least one TAG synthesising enzyme;
wherein said promoter is operatively linked to said nucleic acid molecule so as to cause expression of said TAG synthesising enzyme.
46. A plant or plant cell transformed by a construct as claimed in claim 45 wherein the nucleic acid molecule ensuring a TAG synthesising enzyme comprising an antisense sequence. .
47. A seed of a plant which has been manipulated to express more oleosin/polyoleosin than a corresponding wild-type seed.
48. A plant or part thereof which has been manipulated to express more oleosin/polyoleosin than a corresponding wild-type plant or part thereof.
49. A plant cell which has been manipulated to produce more oleosin/polyoleosin than a corresponding wild-type plant cell.
50. A leaf of a plant which expresses oleosin/polyoleosin and a TAG synthesising enzyme.
51. A plant or part thereof which has been manipulated to express both oleosin/polyoleosin and a TAG synthesising enzyme.
52. A plant or part thereof which has been manipulated to produce both oleosin/polyoleosin and TAG synthesising enzyme.
53. The use of information regarding the oleosin/polyolesin and/or TAG content in plants or seeds in a selection process for generating new plants.
54. A plant or plant cell which produces more or less TAG than a corresponding wild-type plant or cell.
55. The manipulation of the genome may in some preferred embodiments be undertaken by molecular genetic techniques.
56. The use of antisense sequence to an RNA molecule obtained from TAG synthesising enzyme nucleic acid molecule to reduce TAG levels with a cell or in planta.
57. The use of nucleotide sequence information for TAG synthesising enzyme to generate plantibodies or other molecules which can inhibit the plant metabolic pathways which are involved in the synthesis of TAG synthesising enzyme.
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