WO2007124546A1 - Integrase inhibitors 3 - Google Patents

Integrase inhibitors 3 Download PDF

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Publication number
WO2007124546A1
WO2007124546A1 PCT/AU2007/000562 AU2007000562W WO2007124546A1 WO 2007124546 A1 WO2007124546 A1 WO 2007124546A1 AU 2007000562 W AU2007000562 W AU 2007000562W WO 2007124546 A1 WO2007124546 A1 WO 2007124546A1
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Prior art keywords
group
heteroaryl
hydrogen
cyano
furan
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PCT/AU2007/000562
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French (fr)
Inventor
David Ian Rhodes
Katherine Macfarlane
Eric Dale Jones
William Issa
John Joseph Deadman
Neil Choi
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Avexa Limited
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Publication date
Priority claimed from AU2006902229A external-priority patent/AU2006902229A0/en
Application filed by Avexa Limited filed Critical Avexa Limited
Priority to CA002647338A priority Critical patent/CA2647338A1/en
Priority to AU2007246172A priority patent/AU2007246172A1/en
Priority to US12/298,502 priority patent/US20100009973A1/en
Priority to EP07718809A priority patent/EP2019827A1/en
Priority to JP2009506868A priority patent/JP2009535307A/en
Publication of WO2007124546A1 publication Critical patent/WO2007124546A1/en

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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/14Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing three or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/12Ketones
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/4353Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/4427Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems
    • A61K31/4436Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems containing a heterocyclic ring having sulfur as a ring hetero atom
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/4427Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems
    • A61K31/4439Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/496Non-condensed piperazines containing further heterocyclic rings, e.g. rifampin, thiothixene
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/535Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one oxygen as the ring hetero atoms, e.g. 1,2-oxazines
    • A61K31/53751,4-Oxazines, e.g. morpholine
    • A61K31/53771,4-Oxazines, e.g. morpholine not condensed and containing further heterocyclic rings, e.g. timolol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/54Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame
    • A61K31/541Non-condensed thiazines containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D405/00Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom
    • C07D405/02Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings
    • C07D405/04Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D405/00Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom
    • C07D405/14Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/02Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings
    • C07D409/04Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings directly linked by a ring-member-to-ring-member bond
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/02Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings
    • C07D409/06Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Definitions

  • the present invention relates to novel pyridine-based compounds for the treatment of HIV infection.
  • HIV human immunodeficiency virus
  • a feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
  • HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell.
  • the contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs.
  • a double stranded proviral DNA copy is produced.
  • the proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins.
  • PIC pre integration complex
  • Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome.
  • the integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four.
  • the first step involves the assembly of the viral genome into a stable nucleoprotein complex, secondly, processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome.
  • the final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
  • HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects and hence there is a need for new classes of inhibitors.
  • the present invention provides a method of treatment or prophylaxis of a HIV infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • X is selected from-O-, -S-, -S(O)-, -S(O 2 )-and NR 4 ;
  • R 4 is selected from H and Cualkyl
  • n O or l
  • A is C 6 aryl or heteroaryl
  • R 1 is selected from the group consisting of hydrogen, halo, C 6-1 oaryl, C 6-1O aTyIC 1-S aIlCyI, heterocyclyl, hetereoaryl, Cnoalkyl, C 1-1O aIkOXy, C 2 -ioalkenyl, C 2-10 alkynyl, C 3-10 cycloalkyl, -NR 5 R 6 , -C 6 arylNR 5 R 6 , -C 6 aryl-SO 2 -NR 5 R 6 , -C ⁇ aryl-heterocyclyl, -C 6 aryl-SO 2 -heterocyclyl; -heteroaryl-Rio; -Z-C 1-6 alkylene-SO 2 -R 12 , -Z-(C 2 H 4 O) P -R 12 ,
  • R 1 and R 11 are joined together to form a C 3-4 alkylene
  • R 2 is selected from the group consisting of hydrogen, C 6-1 oaryl, C 6-1 oarylC 1-3 alkyl, heterocyclyl, hetereoaryl, Cnoalkyl, C 2-1 oalkenyl, C 2-1 oalkynyl, C 3-1 ocycloalkyl and -NR 5 R 6 , heteroaryl-C 6-1 oaryl, -heteroaryl-heteroaryl;
  • R 3 is selected from the group consisting of hydrogen, cyano, halo, -NO 2 , -C(O)NR 5 R 6 , -CH 2 NR 5 R 6 , -C(O)R 7 and -CO 2 R 7 ;
  • Z is absent or is selected from the group consisting of NR 5 , 0, S, S(O), S(O 2 );
  • p 1 to 3;
  • R 5 and R 6 are each independently selected from the group consisting of hydrogen, Ci-ioalkyl, C 3-6 CyClOaIiIyI, C 6-1 oarylC 1-3 alkyl and C 6-1 oaryl;
  • R 7 is hydrogen or C 1-1O aIlCyI
  • R 12 is hydrogen or C 1-1O aIlCyI
  • R 8 is zero to two substituents each independently selected from the group consisting of -OH, -SO 2 NH 2 , -OC(O)R 7 , -CO 2 R 7 , C 1-10 alkyl, C 1-10 alkoxy, halo, -NO 2 , and -NR 5 R 6 ;
  • R 9 is selected from the group consisting of hydrogen, cyano, -SO 2 NH 2 , -R 1O , and -C(O)R 1 O;
  • R 10 is selected from OH, -Cl-lOalkyl, -OC 1-10 alkyl, -OC 2-10 alkenyl, and -
  • Y is absent or is selected from -O- and -NR 4 -
  • R 11 is selected form the group consisting of hydrogen, Ci-ioalkyl, C 1-1O aIkOXy; or R 1 and R 11 are joined together to form a C 3-4 alkylene.
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a HIV infection in a subject.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • X is selected from -O-, -S-, -S(O)-, -S(O 2 )-and NR 4 ;
  • R 4 is selected from H and C 1-3 alkyl
  • n O or l
  • A is C 6 aryl or heteroaryl
  • R 1 is selected from the group consisting of hydrogen, halo, C 6-1 oaryl, Q-ioarylCi-salkyl, -Ci-ioalkyl-O-Ci-ioalkyl, heterocyclyl, hetereoaryl, C 1-1O aIlCyI, C 1-1O aIkOXy, C 2-1 oalkenyl, C 2-10 alkynyl, C 3-10 cycloalkyl, -NR 5 R 6 , -C 6 arylNR 5 R 6 , -C 6 aryl-SO 2 -NR 5 R6, -C ⁇ aryl-heterocyclyl, -C 6 aryl-SO 2 -heterocyclyl; -heteroaryl-Rio; -Z-C 1-6 alkylene-SO 2 -R 12 , -Z-(C 2 H 4 O) P -R 12 ,
  • R 1 and R 11 are joined together to form a C 3-4 alkylene
  • R 2 is selected from the group consisting of hydrogen, C 6-1 oaryl, C 6-1 oarylC 1-3 alkyl, heterocyclyl, hetereoaryl, Q.ioalkyl, C 2-1 oalkenyl, C 2-1 oalkynyl, C 3-1 ocycloalkyl and -NR 5 R 6 , heteroaryl-C 6-1 oaryl, -heteroaryl-heteroaryl;
  • R 3 is selected from the group consisting of hydrogen, cyano, halo, -NO 2 , -C(O)NR 5 R 6 , -CH 2 NR 5 R 6 , -C(O)R 7 and -CO 2 R 7 ;
  • Z is absent or is selected from the group consisting of NR 5 , O, S, S(O), S(O 2 );
  • p 1 to 3;
  • R 5 and R 6 are each independently selected from the group consisting of hydrogen, Ci-ioalkyl, C 3 . 6 cycloaklyl, C 6-10 arylC 1-3 alkyl and C 6-10 aryl;
  • R 7 is hydrogen or C 1-1O aIlCyI
  • R 12 is hydrogen or C 1-1O aIkVl
  • R 8 is zero to two substituents each independently selected from the group consisting of -OH, -SO 2 NH 2 , -OC(O)R 7 , -CO 2 R 7 , C 1-10 alkyl, C 1-10 alkoxy, halo, -NO 2 , and -NR 5 R 6 ;
  • R 9 is selected from the group consisting of hydrogen, cyano, -SO 2 NH 2 , -R 1O , and -C(O)R 1O ',
  • R 10 is selected from OH, -Cl-lOalkyl, -OC 1-10 alkyl, -OC 2-10 alkenyl, and -
  • Y is absent or is selected from -O- and -NR 4 -
  • R 11 is selected form the group consisting of hydrogen, C 1-1O aIlCyI, C 1-1O aUcOXy; or R 1 and R 11 are joined together to form a C 3-4 alkylene.
  • the present invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • the compounds of the present invention display anti- viral activity.
  • the present inventors have found that the compounds inhibit HIV replication in infected cells and have also shown that the compounds inhibit the activity of HIV integrase in vitro.
  • the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • X is selected from -O-, -S-, -S(O)-, -S(O 2 )-and NR 4 ;
  • R 4 is selected from H and C 1-3 alkyl
  • n O or 1;
  • A is C 6 aryl or heteroaryl
  • R 1 is selected from the group consisting of hydrogen, halo, C 6-1 oaryl, C 6-1 oarylC 1-3 alkyl, -C ⁇ oalkyl-O-C M oalkyl, heterocyclyl, hetereoaryl, C 1-1O aIkVl, C 1-1O aIkOXy, C 2-1 oalkenyl, C 2-10 alkynyl, C 3-10 cycloalkyl, -NR 5 Re, -C 6 arylNR 5 R 6 , -C 6 ⁇ yI-SO 2 -NR 5 R 6 , -C 6 aryl-heterocyclyl, -C 6 aryl-SO 2 -heterocyclyl; -heteroaryl-Rio; -Z-C 1-6 alkylene-S ⁇ 2 -R 12 , -Z-(C 2 H 4 O) P -R 12 ,
  • R 1 and R 11 are joined together to form a C 3-4 alkylene
  • R 2 is selected from the group consisting of hydrogen, C 6-1 oaryl, C 6-1 oarylC 1-3 alkyl, heterocyclyl, hetereoaryl, C ⁇ alkyl, C 2-1 oalkenyl, C 2-1 oalkynyl, Cs ⁇ ocycloalkyl and -NR 5 R 6 , ⁇ heteroaryl-C 6-1 oaryl, -heteroaryl-heteroaryl;
  • R. 3 is selected from the group consisting of hydrogen, cyano, halo, -NO 2 , -C(O)NRsR 6 , -CH 2 NR 5 R 6 , -C(O)R 7 and -CO 2 R 7 ;
  • Z is absent or is selected from the group consisting of NR 5 , O, S, S(O), S(O 2 );
  • p 1 to 3;
  • R 5 and R 6 are each independently selected from the group consisting of hydrogen
  • R 7 is hydrogen or C 1-1O aIlCyI
  • R 12 is hydrogen or C 1-1O aIlCyI
  • R 8 is zero to two substituents each independently selected from the group consisting of -OH, -SO 2 NH 2 , -OC(O)R 7 , -CO 2 R 7 , C 1-10 alkyl, C 1-10 alkoxy, halo, -NO 2 , and -NR 5 R 6 ;
  • R 9 is selected from the group consisting of hydrogen, cyano, -SO 2 NH 2 , -R 1O , and -C(O)R 1O ;
  • R 10 is selected from OH, -Cl-lOalkyl, -OC 1-10 alkyl, -OC 2-10 alkenyl, and - Y-heteroaryl;
  • Y is absent or is selected from -O- and -NR 4 -
  • R 11 is selected form the group consisting of hydrogen, C 1-1O aUCyI, C 1-1O aIkOXy; or R 1 and R 11 are joined together to form a C 3-4 alkylene.
  • R 1 is selected from the group consisting of Ce-ioaryl and heteroaryl.
  • R 2 is selected from the group consisting of C 6-1 oaryl and heteroaryl.
  • n 1
  • R 11 is hydrogen
  • A is phenyl. More preferably, A is 1,4-substituted phenyl.
  • A is pyrdinyl, preferably 1,4-substituted pyridinyl.
  • A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene.
  • the heteroaryl is 2,5-substituted. Examples of compounds of this type which would be contemplated as within the scope of the present invention include:
  • R 1 is -C ⁇ aryl-SOa-heterocyclyl
  • each C 1-1 QaIlCyI group is C 1-6 alkyl, more preferably C 1-3 alkyl.
  • each C 2-10 alkenyl group is preferably C 2-6 alkenyl, more preferably C 2-3 alkenyl and even more preferably allyl.
  • the compound of formula I is:
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a HIV infection in a subject.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • X is selected from -O-, -S-, -S(O)-, -S(O 2 )-and NR 4 ;
  • R 4 is selected from H and C ⁇ aUcyl
  • n O or l
  • A is C 6 aryl or heteroaryl
  • R 1 is selected from the group consisting of hydrogen, halo, C 6-1 oaryl, C 6-1O aTyIC 1-S aIlCyI, -Q.- L oalkyl-O-C M oalkyl, heterocyclyl, hetereoaryl, C 1-1O aIlCyI, C 1-1O aIkOXy, C 2-1 oalkenyl, C 2-10 alkynyl, C 3-10 cycloalkyl, -NR 5 R 6 , -C 6 arylNR 5 R 6 , -C 6 aryl-SO 2 -NR 5 R 6 , -Qaryl-heterocyclyl, -C 6 aryl-S ⁇ 2-heterocyclyl; -heteroaryl-Rio; -Z-C 1-6 alkylene-SO 2 -R 12 , -Z-(C 2 H 4 O) P -R 12 ,
  • R 1 and R 11 are joined together to form a C 3-4 alkylene
  • R 2 is selected from the group consisting of hydrogen, C 6-1 oaryl, C 6-1 oarylC 1-3 alkyl, heterocyclyl, hetereoaryl, C 1-:1 oalkyl, C 2-1 oalkenyl, C 2-1 oalkynyl, C 3-1 ocycloalkyl and -NR 5 R 6, heteroaryl-C 6-1 oaryl, -heteroaryl-heteroaryl;
  • R 3 is selected from the group consisting of hydrogen, cyano, halo, -NO 2 , -C(O)NRsR 6 , -CH 2 NR 5 R 6 , -C(O)R 7 and -CO 2 R 7 ;
  • Z is absent or is selected from the group consisting of NR5, O, S, S(O), S(O 2 );
  • p 1 to 3;
  • R 5 and R 6 are each independently selected from the group consisting of hydrogen, C 1-1O aIlCyI, C 3-6 cycloaklyl, C 6-10 arylC 1-3 alkyl and C 6-lo aryl;
  • R 7 is hydrogen or C t -ioalkyl
  • R 12 is hydrogen or C 1-1 OaIlCyI
  • R 8 is zero to two substituents each independently selected from the group consisting of -OH, -SO 2 NH 2 , -OC(O)R 7 , -CO 2 R 7 , C 1-10 alkyl, C 1-10 alkoxy, halo, -NO 2 , and -NR 5 R 6 ;
  • R 9 is selected from the group consisting of hydrogen, cyano, -SO 2 NH 2 , -R 1O , and -C(O)R 1 O;
  • R 10 is selected from OH, -Cl-lOalkyl, -OC 1-10 alkyl, -OC 2-10 alkenyl, and -
  • Y is absent or is selected from -O- and -NR 4 -
  • R 11 is selected form the group consisting of hydrogen, Q ⁇ oalkyl, C 1-1O aIkOXy; or R 1 and R 11 are joined together to form a C 3-4 alkylene.
  • R 1 is selected from the group consisting of C 6-1 oaryl and heteroaryl.
  • R 2 is selected from the group consisting of C 6-1 oaryl and heteroaryl.
  • n 1
  • R 11 is hydrogen
  • A is phenyl. More preferably, A is 1,4-substituted phenyl.
  • A is pyrdinyl, preferably 1,4-substituted pyridinyl.
  • A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene.
  • the heteroaryl is 2,5-substituted. Examples of compounds of this type which would be contemplated as within the scope of the present invention include:
  • R 1 is -Cearyl-SCVheterocyclyl
  • each C 1-10 alkyl group is C 1-6 alkyl, more preferably C 1-3 alkyl.
  • each C 2 _ioalkenyl group is preferably C 2-6 alkenyl, more preferably C 2-3 alkenyl and even more preferably allyl.
  • the compound of formula I is:
  • the present invention provides pharmaceutical composition
  • a pharmaceutically acceptable carrier, diluent or excipient comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • halo or halogen refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo).
  • alkyl either used alone or in compound terms such as NH(alkyl) or N(alkyl)2, refers to monovalent straight chain or branched hydrocarbon groups.
  • suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-metliylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
  • alkenyl refers to straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to ethenyl, propenyl, isopropenyl, butenyl, pentenyl and hexenyl.
  • alkynyl refers to straight chain or branched hydrocarbon groups containing one or more triple bonds. Suitable alkynyl groups include, but are not limited to ethynyl, propynyl, butynyl, pentynyl and hexenyl.
  • cycloalkyl refers to cyclic hydrocarbon groups. Suitable cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
  • aryl refers to a C 6 -C 1O aromatic hydrocarbon group, for example phenyl or naphthyl.
  • arylalkyl includes, for example, benzyl.
  • heterocycle when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C 3-6 ,wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue.
  • Suitable heteroatoms include O, N and S, S(O) and S(O 2 ). Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms.
  • heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl, lactams, sultams etc.
  • Preferred sultams include:
  • lieteroaryl includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S.
  • Suitable examples of heteroaryl groups include tetrazolyl, 1,2,3-triazolyl, 1,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl etc.
  • the heteroaromatic ring may be fused to another 5- or 6-membered aromatic ring to form a bicyclic aromatic system eg benzofuran.
  • Each alkyl, alkenyl, alkynyl, cycloalkyl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with Ci-C 3 alkyl, C 6 aryl, alkylaryl, OH, OCrC 3 alkyl, halo, CN, NO 2 , CO 2 H, CO 2 C 1- C 3 alkyl, CONH 2 , CONH(Ci_C 3 alkyl), CON(C 1- C 3 alkyl) 2 , trifluoromethyl, NH 2 , NHCCi-Csalkyl) or N(C 1- C 3 alkyl) 2 .
  • an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group, and an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl.
  • Each aryl may optionally be fused with a dioxolane ring. Any of the above substituents may additionally be substituted by optional substituents.
  • Optional substituents also includes suitable nitrogen protecting groups (see “Protective Groups in Organic Synthesis” Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
  • salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts.
  • pharmaceutically acceptable derivative may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
  • Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
  • pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, n
  • Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • pharmaceutically acceptable cations such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • lower alkyl halide such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides
  • dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • This invention also encompasses prodrugs of compounds of formula I.
  • This invention also encompasses methods of treating or preventing disorders in a subject that can be treated or prevented by the inhibition of AIDS and other disorders that can be treated by inhibition of the integrase enzyme by administering prodrugs of compounds of the formula (I).
  • Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
  • Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined through peptide bonds to free amino, hydroxy and carboxylic acid groups of compounds of formula I.
  • the amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone.
  • Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain.
  • Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) joined through a phosphorus-oxygen bond to a free hydroxyl of compounds of formula I.
  • the compounds of formula I may possess asymmetric centres and are therefore capable of existing in more than one stereoisomeric form.
  • the invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof.
  • Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
  • the present invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • compositions of the present invention may contain other therapeutic agents as described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
  • the compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • parenterally such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • Pharmaceutical formulations include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation.
  • the compounds of the invention may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
  • mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated.
  • the method can also be practiced in other species, such as avian species (e.g., chickens).
  • the subjects treated in the above method are mammals, including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species, and preferably a human being, male or female.
  • effective amount means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
  • composition as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • pharmaceutically acceptable it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
  • compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy. All methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients.
  • the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation.
  • the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases.
  • composition is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • the pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension.
  • This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above.
  • the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butane diol.
  • the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil may be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid find use in the preparation of injectables.
  • the pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles.
  • the combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects.
  • other therapeutic agents When other therapeutic agents are employed in combination with the compounds of the present invention they may be used for example in amounts as noted in the Physician Desk Reference (PDR) or as otherwise determined by one of ordinary skill in the art.
  • PDR Physician Desk Reference
  • an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses.
  • the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day.
  • a suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0..5 to 5 or 5 to 50 mg/kg per day.
  • compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0. 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated.
  • the compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
  • Buffer A 100% water
  • Buffer B 100% acetonitrile
  • Buffer C 2% aqueous formic acid
  • Buffer A 100% water
  • Buffer B 100% acetonitrile
  • Buffer C 2% aqueous TFA
  • Aqueous sodium hydroxide (2.0 M, 30 mL) was added dropwise to a solution of 2-acetyl thiophene (1Og, 8.65 mL, 79.3 mmol) and 2-furan-carboxaldehyde (6.92 g, 72.0 mmol) in ethanol (50 mL). After stirring overnight at room temperature the mixture was diluted by addition of (500 mL) and extracted with ethyl acetate (250 mL). The organic phase was dried (Na 2 SO 4 ), filtered and allowed to stand overnight at 0 °C.
  • the reactant f was dissolved in tertahydrofuran/diethyl ether (2: 1) and treated with DIBAL-H at -78 0 C before warming to 0 0 C and stirred for further 4 h. The mixture was stirred at room temperature overnight, followed by routine workup to afford the desired product g (33%).
  • Trifluoro-methanesulfonic acid 3-cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yl ester (80 mg, 0.20 mmol) was placed into reaction flask and dissolved with dry DMF (10 mL). Triethylamine (111 ⁇ L, 0.79 mmol) was added followed by methyl 4-(aminomethyl)-benzoate HCl (81 mg, 0.40 mmol). The reaction mixture was stirred at 80 0 C. After 4 h of reaction time, the reaction was quenched by addition of water (10 mL). A light orange solid was formed which was collected by filtration and suction dried and obtained a dark cream solid (72.5 mg, 87%).
  • Example 18 4-cyano-5-[3-cyano-furan-3-yl-6-(4-morpholin-4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-carboxylic acid methyl ester.
  • the side chains 5 and 6 were coupled to the cores by adapting the method as described in example 11 and hydrolysed to the acid by adapting the method in example 16 to give respectively 5-nitro-3-[3-cyano-furan-3-yl-6-(4- morpholin-4-yl-phenyl)-pyridin-2-yl-oxymethyl]-thiophene-2-carboxylic acid (ES-MS 532, M-H+) and its sodium salts (Rt 13.5min, method 2) and 4-nitro-3-[3-cyano-furan-3-yl-6-(4- morpholin-4-yl-phenyl)-pyridin-2-yl-oxymethyl]-thiophene-2-carboxylic acid.
  • the iodo side chain 6 was prepared as in the scheme above and coupled to the cores by adapting the method in example 11 to give '3-[3-Cyano-4-furan-3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2-yloxymethyl]-5-iodo-thiophene-2-carboxylic acid methyl ester (Es-MS, 650, [M+Na+]. The ester was further converted to acid and its sodium salt by adapting the method in example 16 (HPLC Rt 17.0 min, method 2).
  • Example 21 Preparation of several aldehydes for core formation.
  • the hydroxymethyl compound was prepared by the literature's method (Ref: /. Antibiot. 1995, 48 (11), 1336-44). It was converted to the corresponding aldehyde (2.8g, yield 31 %) by Dess- Martin oxidation. 7 000562
  • the ethyl ester was prepared according to the ref: /. Med. Chem. 2004, 47 (14), 3642-3657. It was further reduced by DIBAL-H to give the corresponding aldehyde 13a.
  • the hydroxyl compound which was prepared from the DIBAL-H reduction of the ethyl ester 2c', was oxidized by PCC to give the desired aldehyde 2c in 45 % yield
  • N N + c, ⁇ Irl 0Et — Toluene ⁇ N V— N COzEt -78 D ° IB C A ,C L H- H 2 C,I 2 ⁇ i N V-N CH0
  • the intermediate 2 was prepared in 37% yield using the method as described in ref.: J. Org. Chem. 1982, 47, 2216-17.
  • the ethyl ester 4 was prepared by the literature method (Ref: Gazz. CMm. Ital. 1947, 77, 206-12). Following lithium aluminium hydride reduction gave the alcohol 5 which was oxides to the aldehyde 6.
  • Isoxazole-S-carboxylic acid which was commercially available from TCI, was converted to the methyl ester, and then reduced by DIBAL-H to afford the isoxazole-5-carbaldehyde (1.05 g, yield 60 %).
  • the (4-morpholino)-acetophenone (1) was then converted to a core (e.g 4) by the method outlined in the scheme below:
  • Reactions are carried out for 2hrs at 37°C, products generated as a result of 3 'processing and strand transfer activity are bound to streptavidin plates and detected with using anti-DIG-alkaline phosphatase conjugate and p- nitro phenyl phosphate substrate.
  • Strand transfer specific assay is of similar format to that of the 3 'processing/strand transfer combined assay except that it uses a biotinylated substrate that represents a pre- processed LTR end (5'-BiO-GACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA-S').
  • Cells are seeded into 96 well microtitre plates at 50,000 cells per 50ul per well in RF-10 containing 2 ⁇ g/mL polybrene (RF- 10/2). Compounds are prepared to 4 x final concentration in RF-10/2, and 30 ⁇ L added to cells. Virus (40 ⁇ L in RF-10/2 containing 1600 pfu) is added to each well or 40 ⁇ L RF-10/2 for negative controls and for assaying compound cytotoxicity. After 24 hrs, an additional 90 ⁇ L of media or media containing 1 x compound is added to each well. At 4 days post infection, 100 ⁇ L of media is removed from each well and replaced with 100 ⁇ l of fresh media with or without compound.
  • IC 50 (3'-ST) represents the assay results for the 3 'processing/strand transfer combined assay
  • IC 5O (ST) represents the assay results for the strand transfer specific assay
  • Table 7 depicts the "scoring system" used in the assays.

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Abstract

The present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof. Compounds of formula (I) are also provided.

Description

lntegrase inhibitors - 3
FIELD OF THE INVENTION
The present invention relates to novel pyridine-based compounds for the treatment of HIV infection.
BACKGROUND OF THE INVENTION
The retrovirus designated "human immunodeficiency virus" or "HIV" is the etiological agent of a complex disease that progressively destroys the immune system. This disease is known as acquired immune deficiency syndrome or AIDS. As at December 2004, an estimated 40 million people have been infected with HIV world wide and over 3 million deaths are occurring annually.
A feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell. The contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs. Through a series of steps a double stranded proviral DNA copy is produced. The proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins. Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome. These proteins and genome assemble at the cell surface and, depending on cell type, possibly other intracellular membranous compartments. Assembled particles then bud out from the cell and during, or soon after, this process mature into infectious HIV particles through the action of the viral protease. The integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four. The first step involves the assembly of the viral genome into a stable nucleoprotein complex, secondly, processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome. The final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
Currently HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects and hence there is a need for new classes of inhibitors.
SUMMARY OF THE INVENTION
In a first aspect, the present invention provides a method of treatment or prophylaxis of a HIV infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000004_0001
X is selected from-O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and Cualkyl;
n is O or l;
A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, C6-1OaTyIC1-SaIlCyI,
Figure imgf000004_0002
heterocyclyl, hetereoaryl, Cnoalkyl, C1-1OaIkOXy, C2-ioalkenyl, C2-10alkynyl, C3-10cycloalkyl, -NR5R6, -C6arylNR5R6, -C6aryl-SO2-NR5R6, -Cβaryl-heterocyclyl, -C6aryl-SO2-heterocyclyl; -heteroaryl-Rio; -Z-C1-6alkylene-SO2-R12, -Z-(C2H4O)P-R12,
or R1 and R11 are joined together to form a C3-4alkylene;
R2 is selected from the group consisting of hydrogen, C6-1oaryl, C6-1oarylC1-3alkyl, heterocyclyl, hetereoaryl, Cnoalkyl, C2-1oalkenyl, C2-1oalkynyl, C3-1ocycloalkyl and -NR5R6, heteroaryl-C6-1oaryl, -heteroaryl-heteroaryl;
R3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NR5R6, -CH2NR5R6, -C(O)R7 and -CO2R7; Z is absent or is selected from the group consisting of NR5, 0, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen, Ci-ioalkyl, C3-6CyClOaIiIyI, C6-1oarylC1-3alkyl and C6-1oaryl;
R7 is hydrogen or C1-1OaIlCyI
R12 is hydrogen or C1-1OaIlCyI;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10alkyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
R9 is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R1O;
R10 is selected from OH, -Cl-lOalkyl, -OC1-10alkyl, -OC2-10alkenyl, and -
Y-heteroaryl; and
Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, Ci-ioalkyl, C1-1OaIkOXy; or R1 and R11 are joined together to form a C3-4alkylene.
In a second aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a HIV infection in a subject.
In a third aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000006_0001
X is selected from -O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and C1-3alkyl;
n is O or l;
A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, Q-ioarylCi-salkyl, -Ci-ioalkyl-O-Ci-ioalkyl, heterocyclyl, hetereoaryl, C1-1OaIlCyI, C1-1OaIkOXy, C2-1oalkenyl, C2-10alkynyl, C3-10cycloalkyl, -NR5R6, -C6arylNR5R6, -C6aryl-SO2-NR5R6, -Cδaryl-heterocyclyl, -C6aryl-SO2-heterocyclyl; -heteroaryl-Rio; -Z-C1-6alkylene-SO2-R12, -Z-(C2H4O)P-R12,
or R1 and R11 are joined together to form a C3-4alkylene;
R2is selected from the group consisting of hydrogen, C6-1oaryl, C6-1oarylC1-3alkyl, heterocyclyl, hetereoaryl, Q.ioalkyl, C2-1oalkenyl, C2-1oalkynyl, C3-1ocycloalkyl and -NR5R6, heteroaryl-C6-1oaryl, -heteroaryl-heteroaryl;
R3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NR5R6, -CH2NR5R6, -C(O)R7 and -CO2R7; Z is absent or is selected from the group consisting of NR5, O, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen, Ci-ioalkyl, C3.6cycloaklyl, C6-10arylC1-3alkyl and C6-10aryl;
R7 is hydrogen or C1-1OaIlCyI
R12 is hydrogen or C1-1OaIkVl;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10alkyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
R9 is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R1O',
R10 is selected from OH, -Cl-lOalkyl, -OC1-10alkyl, -OC2-10alkenyl, and -
Y-heteroaryl; and
Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, C1-1OaIlCyI, C1-1OaUcOXy; or R1 and R11 are joined together to form a C3-4alkylene.
In a fourth aspect, the present invention provides a pharmaceutical composition comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
DETAILED DESCRIPTION OF THE INVENTION
The compounds of the present invention display anti- viral activity. The present inventors have found that the compounds inhibit HIV replication in infected cells and have also shown that the compounds inhibit the activity of HIV integrase in vitro.
Accordingly, in a first aspect, the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000008_0001
X is selected from -O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and C1-3alkyl;
n is O or 1;
A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, C6-1oarylC1-3alkyl, -C^oalkyl-O-CMoalkyl, heterocyclyl, hetereoaryl, C1-1OaIkVl, C1-1OaIkOXy, C2-1oalkenyl, C2-10alkynyl, C3-10cycloalkyl, -NR5Re, -C6arylNR5R6, -C6^yI-SO2-NR5R6, -C6aryl-heterocyclyl, -C6aryl-SO2-heterocyclyl; -heteroaryl-Rio; -Z-C1-6alkylene-Sθ2-R12, -Z-(C2H4O)P-R12,
or R1 and R11 are joined together to form a C3-4alkylene;
R2 is selected from the group consisting of hydrogen, C6-1oaryl, C6-1oarylC1-3alkyl, heterocyclyl, hetereoaryl, Cμ^alkyl, C2-1oalkenyl, C2-1oalkynyl, Cs^ocycloalkyl and -NR5R6, heteroaryl-C6-1oaryl, -heteroaryl-heteroaryl; R.3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NRsR6, -CH2NR5R6, -C(O)R7 and -CO2R7;
Z is absent or is selected from the group consisting of NR5, O, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen,
C1-10alkyl, C3-6cycloaklyl, C6-10arylC1-3alkyl and C6-10aryl;
R7 is hydrogen or C1-1OaIlCyI
R12 is hydrogen or C1-1OaIlCyI;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10alkyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
R9 is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R1O;
R10 is selected from OH, -Cl-lOalkyl, -OC1-10alkyl, -OC2-10alkenyl, and - Y-heteroaryl; and
Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, C1-1OaUCyI, C1-1OaIkOXy; or R1 and R11 are joined together to form a C3-4alkylene.
Preferably, R1 is selected from the group consisting of Ce-ioaryl and heteroaryl.
Preferably, R2 is selected from the group consisting of C6-1oaryl and heteroaryl.
Preferably, n is 1.
Preferably, R11 is hydrogen.
Preferably, A is phenyl. More preferably, A is 1,4-substituted phenyl.
In another preferred from, A is pyrdinyl, preferably 1,4-substituted pyridinyl. In a yet further preferred form, A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene. Preferably, the heteroaryl is 2,5-substituted. Examples of compounds of this type which would be contemplated as within the scope of the present invention include:
Figure imgf000010_0001
Examples of compounds in which R1 and R11 are joined together to form a C3-4alkylene would include:
Figure imgf000011_0001
Examples of compounds where R1 is -Cβaryl-SOa-heterocyclyl would include:
Figure imgf000011_0002
Figure imgf000012_0001
Preferably, each C1-1QaIlCyI group is C1-6alkyl, more preferably C1-3alkyl. Preferably, each C2-10alkenyl group is preferably C2-6alkenyl, more preferably C2-3alkenyl and even more preferably allyl.
Preferably, the compound of formula I is:
Figure imgf000013_0001
Na+
In a second aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a HIV infection in a subject.
In a third aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000014_0001
X is selected from -O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and C^aUcyl;
n is O or l;
A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, C6-1OaTyIC1-SaIlCyI, -Q.-Loalkyl-O-CMoalkyl, heterocyclyl, hetereoaryl, C1-1OaIlCyI, C1-1OaIkOXy, C2-1oalkenyl, C2-10alkynyl, C3-10cycloalkyl, -NR5R6, -C6arylNR5R6, -C6aryl-SO2-NR5R6, -Qaryl-heterocyclyl, -C6aryl-Sθ2-heterocyclyl; -heteroaryl-Rio; -Z-C1-6alkylene-SO2-R12, -Z-(C2H4O)P-R12,
or R1 and R11 are joined together to form a C3-4alkylene;
R2 is selected from the group consisting of hydrogen, C6-1oaryl, C6-1oarylC1-3alkyl, heterocyclyl, hetereoaryl, C1-:1oalkyl, C2-1oalkenyl, C2-1oalkynyl, C3-1ocycloalkyl and -NR5R6, heteroaryl-C6-1oaryl, -heteroaryl-heteroaryl;
R3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NRsR6, -CH2NR5R6, -C(O)R7 and -CO2R7; Z is absent or is selected from the group consisting of NR5, O, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen, C1-1OaIlCyI, C3-6cycloaklyl, C6-10arylC1-3alkyl and C6-loaryl;
R7 is hydrogen or Ct-ioalkyl
R12 is hydrogen or C1-1OaIlCyI;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10alkyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
R9 is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R1O;
R10 is selected from OH, -Cl-lOalkyl, -OC1-10alkyl, -OC2-10alkenyl, and -
Y-heteroaryl; and
Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, Q^oalkyl, C1-1OaIkOXy; or R1 and R11 are joined together to form a C3-4alkylene.
Preferably, R1 is selected from the group consisting of C6-1oaryl and heteroaryl.
Preferably, R2 is selected from the group consisting of C6-1oaryl and heteroaryl.
Preferably, n is 1.
Preferably, R11 is hydrogen.
Preferably, A is phenyl. More preferably, A is 1,4-substituted phenyl.
In another preferred from, A is pyrdinyl, preferably 1,4-substituted pyridinyl.
In a yet further preferred form, A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene. Preferably, the heteroaryl is 2,5-substituted. Examples of compounds of this type which would be contemplated as within the scope of the present invention include:
Figure imgf000016_0001
Examples of compounds in which R1 and R11 are joined together to form a C3-4alkylene would include:
Figure imgf000016_0002
Examples of compounds where R1 is -Cearyl-SCVheterocyclyl would include:
Figure imgf000017_0001
Figure imgf000018_0001
Preferably, each C1-10alkyl group is C1-6alkyl, more preferably C1-3alkyl.
Preferably, each C2_ioalkenyl group is preferably C2-6alkenyl, more preferably C2-3alkenyl and even more preferably allyl.
Preferably, the compound of formula I is:
Figure imgf000018_0002
Na+
In a fourth aspect, the present invention provides pharmaceutical composition comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
As used herein, the term "halo" or "halogen" refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo). As used herein, the term "alkyl" either used alone or in compound terms such as NH(alkyl) or N(alkyl)2, refers to monovalent straight chain or branched hydrocarbon groups. For example, suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-metliylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
As used herein, the term "alkenyl" refers to straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to ethenyl, propenyl, isopropenyl, butenyl, pentenyl and hexenyl.
The term "alkynyl" as used herein, refers to straight chain or branched hydrocarbon groups containing one or more triple bonds. Suitable alkynyl groups include, but are not limited to ethynyl, propynyl, butynyl, pentynyl and hexenyl.
The term "cycloalkyl" as used herein, refers to cyclic hydrocarbon groups. Suitable cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
The term "aryl" as used herein, refers to a C6-C1O aromatic hydrocarbon group, for example phenyl or naphthyl.
The term "arylalkyl" includes, for example, benzyl.
The term "heterocycle" when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C3-6,wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue. Suitable heteroatoms include O, N and S, S(O) and S(O2). Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms. Suitable examples of heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl, lactams, sultams etc.
Preferred sultams include:
Figure imgf000020_0001
The term "lieteroaryl" includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S. Suitable examples of heteroaryl groups include tetrazolyl, 1,2,3-triazolyl, 1,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl etc. The heteroaromatic ring may be fused to another 5- or 6-membered aromatic ring to form a bicyclic aromatic system eg benzofuran.
Each alkyl, alkenyl, alkynyl, cycloalkyl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with Ci-C3alkyl, C6aryl, alkylaryl, OH, OCrC3alkyl, halo, CN, NO2, CO2H, CO2C1-C3alkyl, CONH2, CONH(Ci_C3alkyl), CON(C1-C3alkyl)2, trifluoromethyl, NH2, NHCCi-Csalkyl) or N(C1-C3alkyl)2. For example, an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group, and an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl. Each aryl may optionally be fused with a dioxolane ring. Any of the above substituents may additionally be substituted by optional substituents.
Optional substituents also includes suitable nitrogen protecting groups (see "Protective Groups in Organic Synthesis" Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
The salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts.
The term "pharmaceutically acceptable derivative" may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine. General information on types of pharmaceutically acceptable salts and their formation is known to those skilled in the art and is as described in general texts such as "Handbook of Pharmaceutical salts" P.H.Stahl, C.G.Wermuth, 1st edition, 2002, Wiley- VCH.
Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
This invention also encompasses prodrugs of compounds of formula I. This invention also encompasses methods of treating or preventing disorders in a subject that can be treated or prevented by the inhibition of AIDS and other disorders that can be treated by inhibition of the integrase enzyme by administering prodrugs of compounds of the formula (I). Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined through peptide bonds to free amino, hydroxy and carboxylic acid groups of compounds of formula I. The amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain. Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) joined through a phosphorus-oxygen bond to a free hydroxyl of compounds of formula I.
It will also be recognised that the compounds of formula I may possess asymmetric centres and are therefore capable of existing in more than one stereoisomeric form. The invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof. Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
In a fourth aspect, the present invention provides a pharmaceutical composition comprising a compound according to the third aspect and a pharmaceutically acceptable carrier, diluent or excipient.
The compositions of the present invention may contain other therapeutic agents as described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
The compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions). Pharmaceutical formulations include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation. The compounds of the invention, together with a conventional adjuvant, carrier or diluent, may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
In addition to primates, such as humans, a variety of other mammals can be treated according to the method of the present invention. For instance, mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated. However, the method can also be practiced in other species, such as avian species (e.g., chickens).
The subjects treated in the above method are mammals, including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species, and preferably a human being, male or female.
The term " effective amount" means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
The term "composition" as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts. By "pharmaceutically acceptable" it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
The terms "administration of" and or "administering a" compound should be understood to mean providing a compound of the invention to the individual in need of treatment. The pharmaceutical compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy. All methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients. In general, the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation. In the pharmaceutical composition the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases. As used herein, the term "composition" is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
The pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension. This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butane diol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed including synthetic mono- or diglycerides. hi addition, fatty acids such as oleic acid find use in the preparation of injectables.
The pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles. The combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects. When other therapeutic agents are employed in combination with the compounds of the present invention they may be used for example in amounts as noted in the Physician Desk Reference (PDR) or as otherwise determined by one of ordinary skill in the art.
In the treatment or prevention of conditions which require HIV inhibition or HPV integrase enzyme inhibition an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses. Preferably, the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day. A suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0..5 to 5 or 5 to 50 mg/kg per day. For oral administration, the compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0. 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated. The compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
It will be understood, however, that the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drag combination, the severity of the particular condition, and the host undergoing therapy.
In order that the nature of the present invention may be more clearly understood preferred forms thereof will now be described by reference to the following non-limiting Examples. EXAMPLES
Methods
HPLC conditions
All HPLC measurements were performed on a Waters 2690 Alliance System.
Method 1:
Column:
Waters C18 5 uM Symmetry Column (Part # WAT046980) at 30° C, flow rate 0.7 mL/min, spectra measured at 254 nM
Buffers:
Buffer A: 100% water, Buffer B: 100% acetonitrile, Buffer C: 2% aqueous formic acid
Gradient: (linear gradient curve 6)
10 min 5 min -, min 5 min 45%A:50%B:5%C *- 0%A:95%B:5%C *- 0%A:95%B:5%C »• 45%A:50%B:5%C *- 45%A:50%B:5%C
Method 2:
Column:
Merck C18 Chromolith Column (Part # 1.02129.0001) at 30° C, flow rate 4 mL/min, spectra measured at 254 nM
Buffers:
Buffer A: 100% water, Buffer B: 100% acetonitrile, Buffer C: 2% aqueous TFA
Gradient: (linear gradient curve 6) General Scheme 1: Synthesis of core structure
ROUTE
ROUTE 2
ROUTE 3
Figure imgf000027_0001
Example 1: Preparation of 4,6-Diphenyl-2-thioxo-l,2-dihydro-3-pyridinecarbonitrile (Route 1)
Figure imgf000027_0002
A suspension of cyanothioamide (1.0 g, 9.98 mmol) and dibenzoyl methane (2.24 mg, 9.98 mmol) in dry ethanol (20 mL) was treated with triethylamine (catalytic, 500 μL) then refluxed for 2 hours. Reaction mixture was allowed to cool to room temperature to give a yellow precipitate which was filtered to afford 4,6-diphenyl-2-thioxo-l,2-dihydro-3- pyridinecarbonitrile as a yellow solid (1.02 g, 35%). 1H NMR (300 MHz, D6DMSO) δ 7.11 (IH, s, pyridylH), 7.56 (6H, m, ArH), 7.73 (2H, m, ArH), 7.86 (2H, d, J= 7.2Hz, ArH);
MS (ESl+) m/z 289 (M+l); MS (ESI") m/z 287 (M-I).
Example 2: Preparation of 4-Furan-2-yl-6-thiophen-2-yl-lH-pyridin-2-one and 4-furan- 2-yl-6-thiophen-2-yl-2-thioxo-l,2-dihydro-pyridine-3-carbonitrile (Route 2)
2.1 Preparation of (Z?)-3-Furan-2-yl-l-thiophen-2-yl-propenone
Figure imgf000028_0001
Aqueous sodium hydroxide (2.0 M, 30 mL) was added dropwise to a solution of 2-acetyl thiophene (1Og, 8.65 mL, 79.3 mmol) and 2-furan-carboxaldehyde (6.92 g, 72.0 mmol) in ethanol (50 mL). After stirring overnight at room temperature the mixture was diluted by addition of (500 mL) and extracted with ethyl acetate (250 mL). The organic phase was dried (Na2SO4), filtered and allowed to stand overnight at 0 °C. The resulting crystals were filtered and washed with hexane (25 mL) and ethanol (10 mL) to afford (E)-3-furan-2-yl-l-thiophen- 2-yl-propenone (10.3 g, 70%).
MS (ESI+) m/z 205 (M+l)
2.2: Preparation of 4-Furan-2-yl-6-thiophen-2-yI-lff-pyridin-2-one
Figure imgf000028_0002
AU fumes from this reaction were vented through a bleach trap: A steady stream of nitrogen was bubbled through a solution of (E)-3-furan-2-yl-l-thiophen-2- yl-propenone (1.0 g, 4.90 mmol) and 2-cyano-thioacetamide (453 mg, 5.39 mmol) in DMSO (14 niL). The mixture was cooled to O0C before portion wise addition of potassium tert- butoxide (1.65 g, 14.7 mmol) over 20 minutes. The reaction was warmed to 900C and stirred vigorously for 3 hr, still bubbling N2 through. The reaction was cooled to room temperature and slowly transferred into 4 M aqueous hydrochloric acid (65 mL) cooled in an ice bath (N.B. liberation of HCN) - keeping the temperature below 200C. This solution was stirred until the evolution of gas ceased (approx. 10 min) and filtered, washing the precipitate with water and ethanol to give pure product (983 mg, 83% yield), as a pale brown solid.
1H NMR (300 MHz, CDCl3) δ 7.87, m, IH, Ar-H; 7.84, m, 1Η, Ar-H; 7.67, dd, 1Η, J 1.2, 5.1 Hz, Ar-H; 7.31, m, 2Η, Ar-H; 7.17, dd, 1Η, / 3.9, 5.1 Hz, Ar-H; 6.68, m, 2Η, Ar-H.
MS (ESI+) m/z 244 (M+l)
2.3: Preparation of 4-Furan-2-yl-6-thiophen-2-yl-2-thioxo-l,2-dihydro-pyridine-3- carbonitrile
Figure imgf000029_0001
All fumes from this reaction were vented through a bleach trap:
A steady stream of oxygen was bubbled through a solution of (E)-3-furan-2-yl-l-thiophen-2- yl-propenone (1.0 g, 4.90 mmol) and 2-cyano-thioacetamide (540 mg, 5.39 mmol) in DMSO (14 mL). The mixture was cooled to O0C before portionwise addition of potassium tert- butoxide (1.65 g, 14.7 mmol) over 15 minutes. The reaction was warmed to 5O0C and stirred vigorously, still bubbling O2 through. On completion, the reaction was cooled to room temperature and slowly transferred into 4M HCl (65 mL) cooled in an ice bath (N.B. liberation of HCN) - keeping the temperature below 2O0C. This solution was stirred until the evolution of gas ceased (approx. Vz hr) and filtered, washing the precipitate with water and ethanol. The precipitate was triturated with ether and filtered. The precipitate was triturated with hot glacial acetic acid and filtered on cooling to give pure product (617 mg, 44% yield), as a mixture of monomer and dimer, as an orange solid.
1H NMR (CDCl3) δ 7.70, s, IH, Ar-H; 7.58, m, IH, Ar-H; 7.52, dd, 2Η, J 1.2, 3.9 Hz, Ar-H; 7.24, dd, 1Η, J 1.2, 5.1 Hz, Ar-H; 6.91, dd, 1Η, 73.6, 5.1 Hz, Ar-H; 6.55, dd, 1Η, J 1.8, 3.6 Hz, Ar-H.
MS (ESI+) m/z 567 (dimer M+l)
Example 3: Preparation of 4-Furan-3-yl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3- carbonitrile (Route 3)
Figure imgf000030_0001
3-Furaldehyde (4.8 g, 50.0 mmol), 2-acetylthiophene (8.26 g, 65.5 mmol), ethyl cyanoacetate (5.66 g, 50.0 mmol) and ammonium acetate (37.19 g, 482.5 mmol) were placed into flask and dissolved in absolute ethanol (50 mL). The reaction mixture was stirred at room temperature for 3 d where a yellow solid formed. The reaction was filtered and the yellow solid was washed with water then with ethanol and then suction dried for 1 h to give the product as a fluffy yellow solid, 6.1 g (46%).
1HNMR (D6DMSO, 300 MHz) δ 12.67 (bs, IH, hetero-H), 8.58 (s, IH, H-2 of furan), 8.05 (dd, / 3.9 Hz, 1.2 Hz, IH, H-5 of thiophene), 7.93 (t, / 1.5 Hz, IH, H-4 of furan), 7.88 (app d, /4.5 Hz, IH, H-5 of furan), 7.26 (dd, J 4.8 Hz, 3.6 Hz, IH, H-4 of thiophene), 7.22 (dd, J 1.8 Hz, 0.9 Hz, IH, H-3 of thiophene).
HPLCmethod2 98.92%/2.18 min.
MS (ESI+) m/z 291 (M+23). Example 4: Preparation of trifluoro-methanesulfonic acid 3-cyano-4-furan-3-yl-6- thiophen-2-yl-pyridin-2-yl ester and 2-Bromo-4-furan-2-yl-6-thiophen-2-yl- nicotinonitrile (Route 4)
4.1: Preparation of Trifluoro-methanesulfonic acid 3-cyano-4-furan-3-yl-6-thiophen-2- yl-pyridin-2-yl ester
Figure imgf000031_0001
4-Furan-3-yl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carbonitrile (2.00 g, 7.45 mol) was placed into reaction flask along with dry pyridine (20 niL), stirred at 0 °C under N2. Triflic anhydride (2.5 mL, 14.9 mmol) was added to the suspension reaction dropwise. Some fuming on addition of triflic anhydride. The initial bright yellow colour darkened after a few minutes stirring, the suspension slowly converted to a dark brown solution over a period of 15 min at 0 °C. After which the bath was removed and the reaction mixture was stirred whilst warmed to room temperature and stirred at this temperature for 0.5 h, then evaporated under reduced pressure to give a black/brown solid which was taken up in chloroform. The chloroform solution was loaded onto a silica column and eluted with chloroform. Fractions containing product were collected and evaporated under reduced pressure to give an off-white solid, 1.753 g, 58.7%.
1HNMR (CDCl3, 300 MHz) δ 8.33 (s, IH, H-2 of furan), 7.83 (d, J 3.6 Hz, IH, H-5 of thiophene), 7.69 (s, IH, pyridyl H). 7.63 (m, 2H, H-4 and H-5 of furan), 7.21 (app t, IH, H-4 of thiophene), 6.97 (s, IH, H-2 of thiophene).
HPLCmethod2 97.5%/2.86 min.
MS (ESr) m/z 401 (M+l). 4.2: Preparation of 2-Bromo-4-furan-2-yl-6-thiophen-2-yl-nicotinonitrile
Figure imgf000032_0001
4-Furan-2-yl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carbonitrile (2.51 g, 9.34 mmol), phosphorous pentoxide (3.18 g, 22.4 mmol), tetxabutylammonium bromide (3.39 g, 10.8 mmol) in dry toluene (120 mL) were heated to reflux for 18 h. The mixture as allowed to cool to room temperature and concentrated n vacuo. Residue was subjected to flash chromatography (chloroform) to afford 2-bromo-4-furan-2-yl-6-thiophen-2-yl-nicotinonitrile (1.2 g, 39%) as a yellow solid.
1H (300 MHz, CDCl3) δ 6.66 (dd, J= 3.7, 1.8 Hz, IH, H4-furan), 7.17 (dd, /=5.0, 3.7 Hz, IH, H4-thiophene), 7.56 (dd, /=5.0, 0.9 Hz, IH, H3-thiophene), 7.68 (7.70 (dd, /=3.7, 0.9 Hz, IH, H5-thiophene or H5-furan), 7.81 (dd, /=3.7, 0.9 Hz, IH, H5-thiophene or H5-furan), 8.01 (s, IH, H5-pyridine).
HPLCmethod2 99.1%/2.27 min
MS (ESI+) m/z 333 (M[Br81]+!), 331 (M[Br79]+!)
Example 5: Preparation of 3-Acetyl-4-furan-2-yl-6-thiophen-2-yl-liϊ-pyridin-2-one 4- Isopropyl^-oxo-θ-thiophen^-yl-l^-dihydro-pyridine-S-carboxylic acid amide (Route 5)
5.1: Preparation of 3-AcetyI-4-furan-2-yl-6-thiophen-2-yl-lHr-pyridin-2-one
Figure imgf000033_0001
4-Furan-2-yl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carbonitrile was treated with methylmagnesium bromide to afford 3-acetyl-4-furan-2-yl-6-thiophen-2-yl-lH-pyridin-2-one
5.2: Preparation of 4-Isopropyl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carboxylic acid amide
Figure imgf000033_0002
4-Isopropyl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carbonitrile was treated with 85% aqueous sulphuric acid at 100 0C for 20 min to afford 4-isopropyl-2-oxo-6-thiophen-2-yl-l,2- dihydro-pyridine-3-carboxylic acid amide.
Synthesis of substituted acetophenones
Example 6: Preparation of l-[4-(Morpholine-4-sulfonyl)-phenyl]-ethanone
Figure imgf000033_0003
A solution of 4-acetylbenzene sulfonyl chloride (500 mg, 2.3 mmol) in dry dichloromethane (10 niL) was cooled to 0 °C then treated with a solution of morpholine (220 μL, 2.51 mmol, in 5 mL dichloromethane) dropwise. The reaction mixture was then treated with a solution of triethylamine (478μL, 3.4 mmol in 5 mL dichloromethane) dropwise while maintaining the temperature at 0 0C. After the addition was complete the reaction was maintained at 0 °C for 2 h then allowed to warm to room temperature and stirred under an atmosphere of nitrogen overnight. Following this the reaction mixture was concentrated to dryness under reduced pressure. The resultant solid was then diluted with water (20 mL), filtered and washed with a further 50 mL of water then dried to yield the titled l-(4-(4- morpholinylsulfonyl)phenyl)ethenone as a white solid, (595 mg, 96%).
1H NMR (300 MHz, DMSO) δ 2.66 (3H, s, CH3), 2.91 (4H, m, morpholineH), 3.63 (4H, m, morpholineH), 7.88 (2H, d, /=8.7Hz, ArH), 8.19 (2H, d, J=SJHz, ArH).
MS (ESl+) m/z 270 (M+l).
HPLCpokrdnerck) 99%/0.95 min.
Synthesis of side chains
Example 7: Preparation of 4-Bromomethyl-3-iodo-benzoic acid methyl ester
MeOH/H+ Br2/150 W lamp, benzene
Figure imgf000034_0003
Figure imgf000034_0001
Figure imgf000034_0002
The procedure described in US4499299 was adapted. Example 8: Preparation of 4-Bromomethyl-3-sulfamoyl-benzoic acid methyl ester
Figure imgf000035_0001
Methyl 4-methylbenzoate (20 g)was heated with chlorosulfonic acid (21 g) at 140 °C for 5 h. The reaction mixture was poured slowly into ice-water and the precipitate was collected, washed by water and dried to give sulfonyl chloride b (9.9 g, 35 %).
25% aqueous ammonia (8 mL) was added dropwise into sulfonyl chloride b (2 g) in diethyl ether (40 mL) in ice-bath. The mixture was kept cold for 2 h, then filtered, washed by water and dried to give sulfonylamide c (1.6 g, 90 %)
Compound c was esterified as described in US4499299 to give compound d.
Compound d (1.6 g), N-bromosuccinimide (1.77 g) and 0.03 eq of benzoyl peroxide were mixed with carbon tetrachloride (50 mL) and refluxed for 12 h. Flash chromatography (hexane/ethyl aceatate 3:1) afforded compound e (800 mg, 36 %)
Example 9: Preparation of 2-Amino-4-(toluene-4-sulfonyloxymethyl)-benzoic acid methyl ester
Figure imgf000036_0001
The reactant f was dissolved in tertahydrofuran/diethyl ether (2: 1) and treated with DIBAL-H at -78 0C before warming to 0 0C and stirred for further 4 h. The mixture was stirred at room temperature overnight, followed by routine workup to afford the desired product g (33%).
Compound g was refluxed with p-toluenesulfonic acid (1.0 equivalent) in toluene for 2 h to produce the desired compound h (74 %)
Example 10: Preparation of 5-Bromomethyl-thiophene-2-carboxylic acid methyl ester
Figure imgf000036_0002
m
A solution of 2-thiophenemethanol (5 mL, 52.8 mmol) in dichloromethane (100 mL) was treated with t-butyl-dimethyl silyl chloride (11.94 g, 79.2 mmol) followed by diisopropyl ethylamine (18.4 mL, 105.6 mmol) dropwise. The reaction mixture was stirred overnight at room temperature under an atmosphere of nitrogen. Following this the reaction was diluted with a further 50 mL of dichloromethane and the combined organics washed consecutively with water, 0.1M aqueous hydrochloric acid and finally water (3x100 mL each). The combined organics were then dried (MgSO4) and concentrated under reduced pressure then columned (10%ethyl acetate/petrol) to yield the desired t-butyl-dimethyl-(thiophen-2- ylmethoxy)-silane (i) as a red oil (11.7 g, 97%).
A solution of i (2.0 g, 8.7 mmol) in dry tetrahydrofuran (50 mL) at -4O0C was treated with n-Butyl lithium (1.6M in hexane, 6.6 mL, 10.5 mmol) dropwise and maintained at -40 0C for 1.5 h under a nitrogen atmosphere. Following this CO2(g) (excess) was bubbled through the reaction mixture for 1 hour while allowing the reaction to warm to 0 °C. Finally the reaction was quenched by the addition of aqueous ammonium chloride (40 mL), and then extracted into ethyl acetate. The combined organics were then washed with water, dried (MgSO4) and concentrated under reduced pressure to yield the desired 5-(t-butyl-dimethyl- silanyloxymethyl)-thiophene-2-carboxylic acid (j) as an oil (1.49 g, 62%).
MS (ESI") m/z 271 (M-I).
A solution of j (200 mg, 0.73 mmol) in dichloromethane (30 mL) was treated with diazomethane gas (excess, generated by the basic decomposition of Diazald®). When the reaction was deemed complete the dichloromethane was removed under reduced pressure to afford the desired 5-(t-butyl-dimethyl-silanyloxymethyl)-thiophene-2-carboxylic acid methyl ester (k) as an oil (210 mg, 100%).
A solution of k, (236 mg, 0.82 mmol), in tetrahydrofuran (10 mL) was cooled to 0 °C then treated with tetrabutyl ammonium fluoride (IM in tetrahydrofuran, 1.64 mL, 1.64 mmol) and maintained at 0 0C for 20 min. The reaction was then allowed to warm to room temperature and stirred for a further 2 h. Following this the reaction mixture was poured into brine, (50 mL), and extracted using ethyl acetate (3x50 mL). The combined organics were then dried, (MgSO4) and concentrated under reduced pressure to yield the desired 5- hydroxymethyl-thiophene-2-carboxylic acid methyl ester (1) as an oil (120 mg, 84%).
To a flask charged with dry dichloromethane (50 mL) was added in order triphenyl phosphine (228 mg, 0.87 mmol), imidazole (59.3 mg, 0.87 mmol) and bromine (44.6μL, 0.87 mmol). The reaction mixture was then treated with a solution of 1 (100 mg, 0.58 mmol, in dichloromethane (5 niL)), dropwise and stirred at room temperature under nitrogen for 4 h. When the reaction was deemed complete the mixture was concentrated to dryness under reduced pressure and subjected to flash chromatography (20%ethyl acetate/petrol) to afford the desired 5-bromomethyl-thiophene-2-carboxylic acid methyl ester (m) as colourless crystals, (115 mg, 84%).
1H NMR (300 MHz, CDCl3) δ 3.89 (3H, s, CH3), 4.67 (2H, s, CH2), 7.10 (IH, m, thienylH), 7.64 (IH, d, /=3.6Hz, thienylH).
HPLCmethod2 92%/1.14 min.
General Scheme 2: Compound synthesis
Figure imgf000039_0001
Example 11: Preparation of 4-(3-Cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2- yloxyinethyl)-benzoic acid methyl ester (Step Al)
Figure imgf000040_0001
A solution of 4-furan-3-yl-2-oxo-6-thiophen-2-yl-l,2-dihydro-pyridine-3-carbonitrile (53 mg, 1.98 mmol) in dry acetone (5 mL) treated with 4-bromomethyl-benzoic acid methyl ester (500 mg, 2.18 mmol), potassium carbonate (685 mg, 4.96 mmol) and sodium iodide (catalytic, 1%). The reaction mixture was refluxed for 8 h under an atmosphere of nitrogen then allowed to cool to room temperature, giving a milky precipitate. Following this the reaction mixture was diluted with water (10 mL) then filtered to give 4-(3-cyano-4-furan-3-yl-6-thiophen-2-yl- pyridin-2-yloxymethyl)-benzoic acid methyl ester as a cream solid, (770 mg, 93%).
1H NMR (300 MHz, D6DMSO) δ 3.84 (3H, s, Me), 5.66 (2H, s, CH2), 7.25 (2H, m, thienylH), 7.67 (2H, d, /=8.7Hz, arylH), 7.83 (IH, dd, 7=4.9, 1.2Hz, furylH), 7.88 (IH, s, ArH), 7.95 (IH, t, /=2.1Hz, furylH), 7.99 (2H, d, /=8.7Hz, arylH), 8.09 (IH, dd, /=3.9, 0.9Hz, thienylH), 8.55 (IH, m, furylH),
MS (ESI+) m/z 417 (M+l)
HPLCmethod2 100%/2.67 min.
By adapting the procedure described in Example 11, the compound of Table 1 were prepared: Table 1: Compound prepared by the procedure of Example 11
Figure imgf000041_0001
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
2-Acetoxy-4-(3- cyano-4-furan-3-yl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)- benzoic acid methyl ester
4-(3-Acetyl-4-ethyl-6- thiophen-2-yl-pyridin- 2-yloxymethyl)- benzoic acid methyl ester
4-(3-Acetyl-4- cyclopropyl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)- benzoic acid methyl
Figure imgf000046_0001
ester
3-Bromo-4-(3-cyano-
4-furan-3-yl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)- benzoic acid methyl ester
Figure imgf000046_0002
2.44(M2) 496(M+H+)
Figure imgf000047_0001
2-(3-Cyano- benzyloxy)-4-furan-3- yl-6-thiophen-2-yl- nicotinonitrile
2-(4-Cyano- benzyloxy)-4-furan-3- yl-6-thiophen-2-yl- nicotinonitrile
2-(2-Cyano- benzyloxy)-4-furan-2- yl-6-thiophen-2-yl- nicotinonitrile
Figure imgf000048_0001
Example 12: Preparation of 4-(3-Cyano-4,6-diphenyl-pyridin-2-ylsulfanylmethyl)- benzoic acid (Step A2)
Figure imgf000048_0002
A solution of 4,6-diphenyl-2-thioxo-l,2-dihydro-3-pyridinecarbonitrile (122 mg, 0.42 mmol) in DMF (2 mL) was treated with aqueous potassium hydroxide (IM, 1.05 mL, 1.05 mmol) and allowed to stir for 10 min. Then, 4-bromomethyl-benzoic acid (100 mg, 0.46 mmol) was added and the mixture was allowed to stir overnight. Treatment of the resultant clear solution with IM HCl (1 mL) afforded a milky precipitate which was filtered to give 4-(3-Cyano-4,6- diphenyl-pyridin-2-ylsulfanylmethyl)-benzoic acid as a tan solid (165 mg, 92%).
IH NMR (300 MHz, D6DMSO) δ 4.78 (2H, s, CH2), 7.52-7.63 (8H, m, ArH), 7.73-7.76 (2H, m, ArH), 7.87 (2H, d, /=8.7 Hz, ArH), 7.92 (IH, s, ArH), 8.22-8.25 (2H, m, ArH);
MS (ESI+) m/z 423. (M+l); MS (ESI") m/z All (M-I).
HPLCmethod2 98%/2.45 min.
Example 13: Preparation of 4-Furan-3-yl-2-[4-(2H-tetrazol-5-yl)-benzylamino]-6- thiophen-2-yl-nicotinonitrile (Step B)
Figure imgf000049_0001
(4-Cyano-benzylamino)-4-furan-3-yl-6-thiophen-2-yl-nicotinonitrile (140 mg, 0.37 mmol), tetrabutylammonium fluoride hydrate (48 mg, 0.183 mmol), trimethylsilyl azide (73 uL, 0.55 mmol) and DMF (1 mL) were combined with stirring in a sealed pressure tube and heated to 90 °C for 36 h. After cooling to room temperature the reaction was diluted with ethyl acetate (20 mL) and washed with aqueous hydrochloric acid (1.0 M, 20 mL). The organic phase was dried (Na2SO4), filtered and concentrated in vacuo to afford an orange solid (182 mg) which was subjected to flash chromatography (20% ethyl acetate/hexane to 100% ethyl acetate) to afford 4-furan-3-yl-2-[4-(2H-tetrazol-5-yl)-benzylamino]-6-thiophen-2-yl-nicotinonitrile as an orange solid (29 mg, 19%). 1H NMR (300 MHz, D6DMSO) δ 4.70 (d, /=6.0 Hz, 2H, NHCH2), 7.15 (m, IH, H4-furan), 7.17 (dd, 7=5.0, 3.7 Hz, IH, H4-thiophene), 7.40 (s, IH, H5-pyridine), 7.66 (d, /=8.3 Hz, 2H, H3-aromatic), 7.71 (dd, /=5.0, 0.9 Hz, IH, H3-thiophene), 7.89 (t, /=1.8 Hz, IH, H5-furan), 7.93 (dd, /=3.7, 0.9 Hz, IH, H5-thiophene), 7.96 (d, /=8.3 Hz, 2H, H4-aromatic), 8.44 (t, /=1.8 Hz, H2-furan).
HPLCmethod2 92.2%/1.97 min
MS (ESI+) m/z 426 (M+l); MS (ESI") m/z 424 (M-I)
By adapting the procedure described in Example 13, the compounds of Table 2 were prepared:
Table 2: Compound prepared by the procedure of Example 13
Figure imgf000050_0001
Figure imgf000051_0002
Example 14: Preparation of 4-[(3-Cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2- ylamino)-methyl] -benzoic acid methyl ester (Step C)
Figure imgf000051_0001
Trifluoro-methanesulfonic acid 3-cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yl ester (80 mg, 0.20 mmol) was placed into reaction flask and dissolved with dry DMF (10 mL). Triethylamine (111 μL, 0.79 mmol) was added followed by methyl 4-(aminomethyl)-benzoate HCl (81 mg, 0.40 mmol). The reaction mixture was stirred at 80 0C. After 4 h of reaction time, the reaction was quenched by addition of water (10 mL). A light orange solid was formed which was collected by filtration and suction dried and obtained a dark cream solid (72.5 mg, 87%).
ΗPLCmethod2 91.7%/2.62 min.
MS (ESI+) m/z 416 (M+l). 1HNMR (CDCl3, 300 MHz) 8.06(app t, H2 of furan), 7.92 (app d, /AA-BB- 8.7 Hz, 2xArH next to COOMe), 7.59 (app d, / 3.9 Hz, H5 of thiophene), 7.48 (t, / 1.8 Hz, H5 of furan), 7.43 (app d, /AA'BB- 8.4 Hz, 2xArH next to CH2NH), 7.37 (dd, / 5.1 Hz, 1.5 Hz, H4 of furan), 7.03 (dd, / 5.1 Hz, 3.6 Hz, H4 of thiophene), 6.99 (s, IH of pyridine), 6.80 (app d, /2.4 Hz, H2 of thiophene), 4.77 (s, CH2), 3.80 (s, CH3).
By adapting the procedure described in Example 14, the compound of Table 3 were prepared:
Table 3: Compounds prepared by the procedure of Example 14
Compound Structrue Compound Name 1H LC MS
4-Furan-2-yl-2-(4- methoxy-benzylamino)- 6-thiophen-2-yl- nicotinonitrile
Figure imgf000052_0001
4-Furan-2-yl-2-(3- methyl-benzylamino)- 6-thiophen-2-yl- nicotinonitrile
Figure imgf000052_0002
4-Furan-3-yl-2-(4- methoxy-benzylamino)- 6-thiophen-2-yl- nicotinonitrile
Figure imgf000052_0003
4-Furan-3-yl-2-(3- methyl-benzylamino)- 6-thiophen-2-yl- nicotinonitrile
Figure imgf000053_0001
4-[(3-Cyano-4-furan-2- yl-6-thiophen-2-yl- pyridin-2-ylamino)- methyl]- benzenesulfonamide
4-[(3-Cyano-4-furan-3- yl-6-thiophen-2-yl- pyridin-2-ylamino)- methyl]- benzenesulfonamide
2-(4-Cyano- benzylamino)-4-furan- 2-yl-6-thiophen-2-yl- nicotinonitxile
Figure imgf000053_0002
2-(4-Cyano- benzylamino)-4-furan-
3-yl-6-thiophen-2-yl- nicotinonitrile
4-[(3-Cyano-4-furan-2- yl-6-thiophen-2-yl- pyridin-2-ylamino)- methyl] -benzoic acid methyl ester
Figure imgf000054_0001
Example 15: Preparation of 4-(3-Cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxy)- benzoic acid methyl ester (Step C)
Figure imgf000054_0002
2-Bromo-4-furan-3-yl-6-thiophen-2-yl-nicotinonitrile (160 mg, 0.513 mmol) and sodium; 4- methoxycarbonyl-phenolate (89 mg, 0.513 mmol) in DMF (2 mL) were stirred ay 90 °C for 18 h then cooled to room temperature. The mixture was diluted with aqueous hydrochloric acid (2.0 M, 5 mL) and stirred for 15 min. The resulting precipitate was collected by filtration then subjected to flash chromatography (50% chloroform/hexane) to afford 4-(3-cyano-4- furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxy)-benzoic acid methyl ester as a white solid (141 nig, 68%).
1H NMR (300 MHz, CDCl3) δ 3.95 (s, 3H, OCH3), 6.97 (dd, 7=2.3, 0.9 Hz, IH, H4-furan), 7.08 (dd, 7=5.0, 3.7 Hz, IH, H4-thiophene), 7.37 (d, 7=8.7 Hz, 2H, H2-aromatic), 7.42 (dd, 7=5.0, 1.4 Hz, H3-thiophene), 7.43 (s, IH, H5-pyridine), 7.59 (dd, 7=3.7, 1.4 Hz, IH, H5- thiophene), 7.61 (m, IH, H2 or H5-furan), 8.14 (d, 7=8.7 Hz, 2H, H3-aromatic), 8.31 (m, IH, H2 or H5-furan).
HPLCmethod2 97.6%/2.28 min
MS (ESI+) m/z 403 (M+l)
By adapting the procedure described in Example 15, the compound of Table 4 were prepared:
Table 4: Compounds prepared by the procedure of Example 15
Compound Structrue Compound Name 1H LC MS
3-(3-Cyano-4-furan-2- yl-6-thiophen-2-yl- pyridin-2-yloxy)- benzoic acid methyl ester
2-(4-Cyano-phenoxy)- 4-furan-2-yl-6- thiophen-2-yl- nicotinonitrile
Figure imgf000055_0001
3-(3-Cyano-4-furan-3- yl-6-thiophen-2-yl- pyridin-2-yloxy)- benzoic acid methyl ester
2-(4-Cyano-phenoxy)- 4-furan-3-yl-6- thiophen-2-yl- nicotinonitrile
4-(3-Cyano-4-furan-3- yl-6-thiophen-2-yl- pyridin-2-yloxy)- benzoic acid methyl ester
Figure imgf000056_0001
Example 16: Preparation of 4-(3-Cyano-4-furan-3-yI-6-thiophen-2-yl-pyridin-2- yloxymethyl)-benzoic acid (Step D)
Figure imgf000057_0001
A solution of 4-(3-cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxymethyl)-benzoic acid methyl ester (720 mg, 1.74 mmol) in THF (30 mL) was treated with aqueous lithium hydroxide (1 M, 10.43 mL, 10.43 mmol) and stirred at 50 0C for 8 h then allowed to cool to room temperature. The mixture was diluted with water (5 mL) then made acidic with IM aqueous hydrochloric acid to give a pale yellow precipitate which was filtered to give 4-(3- cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxymethyl)-benzoic acid as a pale yellow solid, (670 mg, 96%).
1H NMR (300 MHz, D6DMSO) δ 5.65 (2H, s, CH2), 7.25 (2H, m, thienylH), 7.64 (2H, d, /=8.1 Hz, arylH), 7.83 (IH, d, /=4.8 Hz, furylH), 7.88 (IH, s, ArH), 7.95 (IH, t, /=1.8 Hz, furylH), 7.97 (2H, d, /=8.1 Hz, arylH), 8.10 (IH, d, /=3.9 Hz, thienylH), 8.56 (IH, m, furylH), 12.95 (IH, br s, CO2H).
MS (ESI4") m/z 403 (M+l); MS (ESI") m/z 401(M-I).
HPLCmethod2 100%/2.45 min. Example 17 synthesis of 3[3-cyano-4-furan-3-yl-6-(4-morpholin-4-yl-phenyl)-pyridin-2- yloxymethyl-3-chloro-thiophene-5-carboxylic acid.
Figure imgf000058_0001
Compound 5, 2-substituted, 4-carboxy-(3-Bromomethyl)-thiophenes 6 were prepared by the above route. 3-Bromo-4-methylthiophene 3 was obtained from 3-methylthiophene according to the ref: Syn. Com. 1981; 11(1); 25-28.
Example 18 4-cyano-5-[3-cyano-furan-3-yl-6-(4-morpholin-4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-carboxylic acid methyl ester.
2-Methylthiophene was reacted with bromine (2.0 eq) in acetic acid at rt for 2 h to give the di- bromide 2. Compound 2 was carbonylated with BuIi and dry ice to give compound 3 in 74.4% yield and the carboxylate was esterified to give compound 4 in 75.1% yield.
The mixture of compound 4 and CuCN (5.0 eq) was refluxed for 5 hours to afford the cyanide 6 in 51 % yield. Bromination gave the desired bromide 7.
Figure imgf000058_0002
yield=75.09%
Figure imgf000058_0003
51 % CuCN/DMF
Figure imgf000058_0004
Intermediate 7 was reacted with the 4-furan-3-yl-2-oxo-6-(4-morpholin-4yl-phenyl)-l,2- dihydro-pyridine-3-carbonitrile by adapting the procedure in example 11 to produce the desired product 4-cyano-5-[3-cyano-furan-3-yl-6-(4-morpholin-4-yl~phenyl)-pyridin-2- yloxymethyl]-thiophene-2-carboxylic acid methyl ester.
Example 19 Synthesis of 5-nitro-3-[3-cyano-furan-3-yl-6-(4-morpholin-4-yl-phenyl)- pyridin-2-yl-oxymethyl]-thiophene-2-carboxylic acid and 4-nitro-3-[3-cyano-furan-3-yl-6- (4-morpholin-4-yl-phenyl)-pyridin-2-yl-oxymethyl]-thiophene-2"carboxyIic acid .
Figure imgf000059_0001
The nitration reaction of 3-methyl-thiophene-2-carboxylic acid methyl ester gave two isomers which were separated by flash chromatography to give 3 (7.8 g, 70 % yield) and 4 (1.9 g, 17 % yield). Each of them was converted to the bromomethyl compound by NBS/BPO giving 1.0 g of compound 5 and 0.8 g of compound 6 respectively. The side chains 5 and 6 were coupled to the cores by adapting the method as described in example 11 and hydrolysed to the acid by adapting the method in example 16 to give respectively 5-nitro-3-[3-cyano-furan-3-yl-6-(4- morpholin-4-yl-phenyl)-pyridin-2-yl-oxymethyl]-thiophene-2-carboxylic acid (ES-MS 532, M-H+) and its sodium salts (Rt 13.5min, method 2) and 4-nitro-3-[3-cyano-furan-3-yl-6-(4- morpholin-4-yl-phenyl)-pyridin-2-yl-oxymethyl]-thiophene-2-carboxylic acid. Example 20 Synthesis of '3-[3-Cyano-4-furan-3-yl-6-(4-morpholin-4-yl-phenyl)-pyridin- 2-yloxyinethyl]-5-iodo-thiophene-2-carboxylic acid methyl ester
Figure imgf000060_0001
5 6
Reduction of compound 3 from example 19 above, gave compound 2. Following which, diazotization reaction gave the bromide 3. Further bromination by NBS/BPO in CCl4 afforded the new side chain 4.
The iodo side chain 6 was prepared as in the scheme above and coupled to the cores by adapting the method in example 11 to give '3-[3-Cyano-4-furan-3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2-yloxymethyl]-5-iodo-thiophene-2-carboxylic acid methyl ester (Es-MS, 650, [M+Na+]. The ester was further converted to acid and its sodium salt by adapting the method in example 16 (HPLC Rt 17.0 min, method 2).
Example 21. Preparation of several aldehydes for core formation.
Experiment 21a
Figure imgf000060_0002
The hydroxymethyl compound was prepared by the literature's method (Ref: /. Antibiot. 1995, 48 (11), 1336-44). It was converted to the corresponding aldehyde (2.8g, yield 31 %) by Dess- Martin oxidation. 7 000562
60.
Experiment 21b
Figure imgf000061_0001
The ethyl ester was prepared according to the ref: /. Med. Chem. 2004, 47 (14), 3642-3657. It was further reduced by DIBAL-H to give the corresponding aldehyde 13a.
Experiment 21c
22hh CO2Et
Figure imgf000061_0002
Figure imgf000061_0003
I **C' DIBAL-H (3.1 equlv.) I
-78 °C, 2 h 39 %
The hydroxyl compound, which was prepared from the DIBAL-H reduction of the ethyl ester 2c', was oxidized by PCC to give the desired aldehyde 2c in 45 % yield
Experiment 21d
" N=N + c,Λ Irl 0Et — Toluene ^ N V— N COzEt -78 D °IBCA,CLH-H 2C,I2 ^i N V-N CH0
O 30 % 1 2
The DIBAL-H reduction of the oxadiazole 1 at -780C gave the desired aldehyde 2 in 30 % yield. Experiment 21e
CuSO4 COOC2H5 Na, HC0o 2C<-/2_:H COOC2H5
-COOC2H5 CΛQH
EtO .JC OEt O0C 24h, rt 24h OHC A CHO
Reflux, 24h 71% . 37%
Figure imgf000062_0001
The intermediate 2, was prepared in 37% yield using the method as described in ref.: J. Org. Chem. 1982, 47, 2216-17. The ethyl ester 4 was prepared by the literature method (Ref: Gazz. CMm. Ital. 1947, 77, 206-12). Following lithium aluminium hydride reduction gave the alcohol 5 which was oxides to the aldehyde 6.
Experiment 2 If
Figure imgf000062_0002
Isoxazole-S-carboxylic acid, which was commercially available from TCI, was converted to the methyl ester, and then reduced by DIBAL-H to afford the isoxazole-5-carbaldehyde (1.05 g, yield 60 %).
Experiment 21 g
Figure imgf000063_0001
? ! HC(OOH2CH3,,- A°2° - CH°0∞Na
OEt NH2OH-HCI
Figure imgf000063_0002
Dess-Martin oxidation of the alcohol 5 afforded the desired aldehyde 6, contaminated by the starting material 4b'. 2 g of the crude aldehyde 5b was obtained and used directly for the core formation.
Example 2 Ih
Figure imgf000063_0003
4 5 6
3.2 g of compound 5 was prepared according to the ref: HeIv. Chim. Acta. 1997, 80, 1528-1554 and was converted to the corresponding aldehyde 6. Experiment 21i
j
Figure imgf000064_0001
0.5 g of aldehyde 4 was prepared in 6 % overall three-step yield. (Ref: J. Med. Chem. 1999, 42, 4961-4969)
Example 2 Ii
Figure imgf000064_0002
Dess-Martin χO. , CHO
Figure imgf000064_0003
61 % 41 %
Compound 4 was prepared according to the Ref: J. Hetero. Chem. 1995, 32, 1693-1702. Then, it was reduced by NaBH4ZLiCl in ethanol solution. Further oxidation by Dess-Martin reagent gave the desired aldehyde 6 in 25 % overall two-step yield.
Example 21k
Figure imgf000064_0004
Compound 4 was obtained according to the Ref: /. Chem. Soc. PTl. 1988, 1875-1880. and was converted to the aldehyde 5. Example 22 preparation of (4-morpholin-4-yl-phenyl)-l,2-dihydro — pyridine-3- carbonitrile cores
Figure imgf000065_0001
1a (R=Br) Ib (R=F)
Then, 4-fluorineacetophenone was used as the substrate of SNAT reaction for the preparation of compound 3 (Entry 5-8). Entry 7 gave the best result.
Figure imgf000065_0002
The (4-morpholino)-acetophenone (1) was then converted to a core (e.g 4) by the method outlined in the scheme below:
Figure imgf000066_0001
compounds 4a-4c were prepared by the one-pot reaction.
Example 23
Me.
NBS, AIBN
Heterocycie^-CO.R Heterocycie^-CO2R
R=Ethyl or Methyl
Three side chains were prepared by NBS bromination of methyl group, which were indicated as the following table:
Figure imgf000066_0002
By adapting the procedure described in Example 16, the compound of Table 5 were prepared:
Table 5: Compounds prepared by the procedure of Example 16
Figure imgf000067_0001
Figure imgf000068_0001
Figure imgf000069_0001
Figure imgf000070_0001
Figure imgf000071_0001
Figure imgf000072_0001
Figure imgf000073_0001
Figure imgf000074_0001
Figure imgf000075_0001
Example 17: Preparation of 4-(3-Cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2- yloxymethyl)-N-(2#-tetrazol-5-yl)-benzamide (Step E)
Figure imgf000076_0001
4-(3-Cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxymethyl)-benzoic acid (340 mg, 0.844 mmol) was dissolved with stirring under nitrogen in dry THF (15 mL). Triethylamine (236 μL, 1.69 mmol) was added dropwise and the solution stirred at room temperature for 15 min then cooled to -5° C (ice/salt/water bath). Zrøbutyl chloroformate (220 μL, 1.69 mmol) was added dropwise and after 20 min a solution of 5-aminotetrazole (144 mg, 1.69 mmol) in dry DMF (1 mL) was added dropwise over 2 min, followed by Triethylamine (236 μL, 1.69 mmol). The cooling bath was removed and the reaction allowed to warm to room temperature and stirred for 18 h. Volatiles were removed in vacuo and the residue triturated with 1.0 M HCl (20 mL) and water (20 mL). The suspension was sonicated to break up the material then filtered. The residue was triturated with hot methanol, then filtered and washed with 2.0 M NaOH (10 mL), water (10 mL), then dried under vacuum at 50° C for 2 h to afford 4-(3- cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2-yloxymethyl)-N-(2H-tetrazol-5-yl)-benzamide (205 mg, 52%) as a slight brown solid: 1H NMR (D6DMSO) δ 2.0 (s, 2H, CH2), 7.25 (m, 2H, H4-thiophene and H5-furan), 7.63 (d, /=8.3 Hz, 2H, H3-aromatic), 7.83 (dd, /=5.0, 1.2 Hz, 1 H, H3-thiophene),.7.88 (s, IH, H5-pyridine), 7.94 (m, IH, H2 or H5-furan), 8.02 (d, /=8.3 Hz, 2H, H4-aromatic), 8.11 (dd, /=3.7, 1.2 Hz, IH, H5-thiophene), 8.56 (m, IH, H2 or H5- furan), 10.47 (s, IH, NH).
MS (EST) m/z 468 (M-I). Example 18: Preparation of Sodium; 4-(3-cyano-4-furan-3-yl-6-thiophen-2-yl-pyridin-2- yloxymethyl)-benzoate (Step F)
Figure imgf000077_0001
Acid (1 mmol) was dissolved/suspended in methanol (1 mL) with stirring. Aqueous sodium hydroxide solution (2.0 M, 1 mmol) (or aqueous tris solution (2.0 M, 1 mmol) for tris salts) was added and the resulting mixture stirred for 10 min at room temperature. Volatiles were removed in vacuo and the residue dissolved in water (2 mL) filtered (porsity 4 sinter) and freeze dried for 2 d.
Table 6: Compounds prepared by the procedure of Example 18
Figure imgf000077_0002
Figure imgf000078_0001
Figure imgf000079_0001
Sodium; 4-[3-cyano-4-
(2,2-dimethyl-
[l,3]dioxolan-4-yl)-6- thiophen-2-yl-pyridin-
2-yloxymethyl]-
Figure imgf000080_0001
benzoate
Sodium; 4-[3-cyano-4- furan-2-yl-6-(5-methyl- tliiophen-2-yl)-pyridin-
2-yloxymethyl]- benzoate
Sodium; 4-[3-cyano-4- (tetxahydro-furan-3-yl)- 6-thiophen-2-yl- pyridin-2- yloxymethyl] -benzoate
Sodium; 4-(4- benzofuran-2-yl-3- cyano-6-thiophen-2-yl- pyridin-2- yloxymethyl)-benzoate
Figure imgf000080_0002
Sodium; 3-(3-cyano-4- furan-2-yl-6-thiophen- 2-yl-pyridin-2-yloxy)- benzoate
Figure imgf000081_0001
Sodium; 4-[3-cyano-4- (5-pyridin-3 -yl-furan-2- yl)-6-thiophen-2-yl- pyridin-2- yloxymethyl] -benzoate
Figure imgf000081_0002
Naτ
Sodium; 4-[6-(5-chloro- thiophen-2-yl)-3-cyano- 4-furan-2-yl-pyridin-2- yloxymeihyl] -benzoate
Figure imgf000081_0003
Naτ
Sodium; 3-(3-cyano-4- furan-3 -yl-6-thiophen- 2-yl-pyridin-2-yloxy)- benzoate
Figure imgf000081_0004
Figure imgf000082_0001
Sodium; 4-(3-cyano-4- furan-3-yl-6-thiophen- 2-yl-pyridin-2- yloxymethyl)-3 -nitro- benzoate
Sodium; 4-(3-cyano-4- furan-3 -yl-6-thiophen- 2-yl-pyridin-2- yloxymethyl)-2- methoxy-benzoate
Figure imgf000083_0001
Naτ
Sodium; 4-(3-cyano-4- furan-3-yl-5,6- dimethyl-pyridin-2- yloxymethyl)- benzoate5
4-(3-Cyano-4-furan-3- yl-5,6-dimethyl- pyridin-2- yloxymethyl)- benzoate2-hydroxy- 1,1- bis-hydroxymetliyl- ethyl-ammonium
Figure imgf000084_0001
3 -Bromo-4-(3 -cyano-4- furan-3-yl-6-thiophen-
2-yl-pyridin-2- yloxymethyl)- benzoate2-hydroxy- 1,1-
Figure imgf000085_0001
bis-hydroxymethyl- ethyl- ammonium
5-(3-Cyano-4-furan-3- yl-6-thiophen-2-yl- pyridin-2- yloxymethyl)-
Figure imgf000085_0002
thiophene-2- carboxylate2-hydroxy-
1 , 1 -bis-hydroxymethyl- 2.02(M ethyl-ammonium 2) 431(m+Na+)
4-(3-Cyano-4-furan-3- yl-6-thiophen-2-yl-
HO H1H pyridin-2-
Figure imgf000085_0003
yloxymethyl)-2- methoxy-benzoate2- hydroxy-l,l-bis- hydroxymethyl-ethyl- 2.06(M ammonium 2) (M+H+) 4-[3-Cyano-4-furan-3- yl-6-(lH-pyrrol-2-yl)- pyridin-2- yloxymethyl]-
Figure imgf000086_0001
benzoate2-hydroxy- 1,1- bis-hydroxymethyl- 2.06(M ethyl-ammonium 2) (M+H+)
Sodium; 4-(3-acetyl-4- ethyl-6-thiophen-2-yl- pyridin-2- yloxymethyl)-benzoate
4-(3 -Acetyl-4-ethyl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)- benzoate2-hydroxy- 1,1-
Figure imgf000086_0002
bis-hydroxymethyl- ethyl-ammonium
Sodium; 4-(3-acetyl-4- cyclopropyl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)-
Figure imgf000086_0003
benzoate
Figure imgf000087_0001
4-(4-Furan-2-yl-6- thiophen-2-yl-pyridin-
2-yloxymethyl)-
Figure imgf000088_0001
benzoate2-hydroxy- 1,1- bis-hydroxymethyl- 2.08(M ethyl-arnmonium 2) 378(M+H+)
Sodium; 4-[3-cyano-4- furan-3-yl-6-(3- methoxy-phenyl)- pyridin-2- yloxymethyl] -benzoate
4-[3-Cyano-4-furan-3- yl-6-(3-methoxy- phenyl)-pyridin-2- yloxymethyl]-
Figure imgf000088_0002
benzoate2-hydroxy- 1,1- bis-hydroxymethyl- 2.09(M ethyl-ammonium 2) 427(M+H+)
Sodium; 4-(3-cyano-4- furan-3 -yl-6-thiophen- 2-yl-pyridin-2- yloxymethyl)-3-iodo- benzoate 2.20(M
Figure imgf000088_0003
2) 529(M+H+) 4-(3-Cyano-4-furan-3- yl-6-thiophen-2-yl- pyridin-2- yloxymethyl)-3 -iodo-
Figure imgf000089_0001
benzoate2-hydroxy- 1,1- bis-hydroxymethyl- 2.21(M ethyl-ammonium 2) 529(M+H+)
Sodium; 4-[3-cyano-4- furan-3-yl-6-(4- morpholin-4-yl- phenyl)-pyridin-2- 2.08(M 504(M+Na+ yloxymethyl] -benzoate 2) )
4-[3-Cyano-4-furan-3- yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2- yloxymeihyl]-
Figure imgf000089_0002
benzoate2-hydroxy- 1,1- bis-hydroxymethyl- 2.08(M ethyl-ammonium 2) 482(M+H+)
4-Furan-3-yl-2-[4-(2H- tetrazol-5-yl)- benzyloxy] -6-thiophen- 2-yl-nicotnonitrile; sodium salt
Figure imgf000089_0003
Naτ 4-Furan-3-yl-2-[3-(2H- 2.12( tetrazol-5-yl)- M2) benzyloxy] -6-thiophen-
2-yl-nicotinonitrile;
Figure imgf000090_0001
sodium salt
4-Furan-3-yl-2-[4-(2H- tetrazol-5-yl)- benzylamino]-6- thiophen-2-yl- nicotinonitrile
Figure imgf000090_0002
Further compounds and salts
STRUCTURE MW Name 1H parent Lc/ms HPLC retention
NMR time for salt (Ic
Figure imgf000090_0003
659.36 4,5-Dibromo-3-[3-cyano-4- furan-3-yl-6-(4-morpholin-4- yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid methyl ester
501.57 2-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-3-carboxylic acid
Figure imgf000091_0001
methyl ester
Figure imgf000091_0002
539
512.55 4-Cyano-5-[3-cyano-4-furan- 3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2- yioxymethyl]-thiophene-2-
Figure imgf000091_0003
carboxylic acid
Figure imgf000091_0004
501
582.48 2-Bromo-4-[3-cyano-4-furan- 3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2- yloxymethyl]-thiophene-3- carboxylic acid
677.42 3,5-Dibromo-4-[3-cyano-4- furan-3-yl-6-(4-morphoIin-4- yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000091_0005
carboxylic acid 500.52 4-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- oxazole-5-carboxylic acid
Figure imgf000092_0001
ethyl ester
Figure imgf000092_0002
516.58 5-[3-Cyano-4-(2-methyl- oxazol-4-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid methyl ester
13.06(M3)
545.56 4-[3-Cyano-4-(5-methyl- oxazol-2-yl)-6-(4-morpholin- 4-yI-phenyl)-pyridin-2- yloxymethyl]-oxazole-5-
Figure imgf000092_0003
carboxylic acid ethyl ester 568(M+Na+) 516.58 5-[3-Cyano-4-(3-methyl- isoxazol-5-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000093_0001
carboxylic acid methyl ester
Figure imgf000093_0002
17.9(M3) 546.61 3-[3-Cyano-4-(5-ethoxy- oxazol-2-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000094_0001
carboxylic acid methyl ester
Figure imgf000094_0002
14.7(M3)
530.61 3-[3-Cyano-4-(3,5-dimethyl- isoxazol-4-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000094_0003
carboxylic acid methyl ester
Figure imgf000094_0004
627.46 3-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-5- iodo-thiophene-2-carboxylic
Figure imgf000095_0001
acid methyl ester
Figure imgf000095_0002
516.58 2-[3-Cyano-4-(3-methyl- isoxazol-5-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-3-
Figure imgf000096_0001
carboxylic acid methyl ester
Figure imgf000096_0002
Figure imgf000097_0001
547.55 2-[3-Cyano-4-isoxazol-3-yl-6- (4-morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-4- nitro-cyclopenta-1 ,3- dienecarboxylic acid methyl ester 570(M+Na+) 15.07(M3)
567.42 3-Bromo-4-[3-cyanc-4- isoxazol-3-yl-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-cyclopenta-1 ,3-
Figure imgf000098_0001
dienecarboxylic acid
Figure imgf000098_0002
611/612(M+H+) 15.7(M3)
595.48 4-Bromo-5-[3-cyano-4-(5- methyl-oxazol-4-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester 619(M+Na+) 16.32(M3)
595.48 4-Bromo-5-[3-cyano-4-(3- methyl-isoxazol-5-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester 597(M+H+) 17.3(M3)
581.45 4-Bromo-5-[3-cyano-4-(3- methyl-isoxazol-5-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000098_0003
thiophene-2-carboxylic acid
Figure imgf000098_0004
595.48 4-Bromo-5-[3-cyano-4-(2- methyl-oxazol-4-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester 596/597(M+H+) 17.5(M3)
581.45 4-Bromo-5-[3-cyano-4-(2- methyl-oxazol-4-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000099_0001
thiophene-2-carboxylic acid
Figure imgf000099_0002
565.05 5-Chloro-4-[3-cyano-4-(2,4- dimethyl-oxazol-5-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000100_0001
thiophene-2-carboxylic acid methyl ester 565/566(M+H+) 16.9(M3) (4-
ic
Figure imgf000100_0002
15.4(M3)
502.55 4-[3-Cyanc~4-(5-methyI- oxazol-4-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000100_0003
carboxylic acid
Figure imgf000100_0004
Figure imgf000100_0005
532.54 5-[2-(5-Carboxy-thiophen-2- ylmethoxy)-3-cyano-6-(4- morpholin-4-yl-phenyl)- pyridin-4-yl]-isoxazole-4-
Figure imgf000100_0006
carboxylic acid
Figure imgf000100_0007
Figure imgf000101_0001
532(M-H+) 14.23(M3)
580.64 5-[3-Cyano-4-isoxazoI-3-yl-6- (4-morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-4- methanesulfonyl-thiophene- 2-carboxylic acid methyl ester 603(M+Na+) 14.45(M3)
530.56 5-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-4- hydroxycarbonimidoyl-
Figure imgf000101_0002
thiophene-2-carboxylic acid
Figure imgf000101_0003
573(M-H+) 13.67(M3)
547.55 3-[3-Cyano-4-isoxazol-5-yl-6- (4-morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-5- nitro-thiophene-2-carboxylic
Figure imgf000101_0004
acid methyl ester
)
Figure imgf000101_0005
) methyl ester
Figure imgf000102_0001
Figure imgf000102_0002
methyl ester
595.48 4-Bromo-5-[3-cyano-4-(3,5- dimethyl-isoxazol-4-yl)-6-(4- y morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000103_0001
thiophene-2-carboxylic acid
Figure imgf000103_0002
581/582(M+H+) 16.83(M3)
581.45 4-Bromo-5-[3-cyano-4-(5- methyl-oxazol-4-yl)-6-(4- y morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000103_0003
thiophene-2-carboxylic acid
Figure imgf000103_0004
methyl ester
513.54 4-Cyano-5-[3-cyanc~4- isoxazol-3-yl-6-(4-morpholin- Y 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000104_0001
carboxylic acid
Figure imgf000104_0002
502.55 2-[3-Cyano-4-(5-methyl- oxazol-4-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-3- carboxylic acid
502.55 3-[3-Cyano-4-(5-methyi- oxazol-4-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid
624.7 5-[3-Cyano-4-(5-ethoxy- oxazol-2-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-4- methanesulfonyl-thiophene- 2-carboxylic acid methyl ester
532.58 5-[3-Cyano-4-(5-methoxy- oxazol-2-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2-
Figure imgf000104_0003
carboxylic acid methyl ester 559.6 5-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2,4-dicarboxylic acid dimethyl ester
543.6 4-Acetyl-5-[3-cyano-4-furan- 3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid methyl ester
acid -
Figure imgf000105_0001
550.59 3-[3-Cyano-6-(4-morpholin-4- yl-phenyl)-4-(tetrahydro- pyran-4-yl)-pyridin-2- yloxymethyl]-4-nitro- thiophene-2-carboxylic acid
581.45 5-Bromo-4-[3-cyanc~4-(3- methyl-isoxazol-5-yl)-6-(4- morpholin-4-yI-phenyl)- pyridin-2-yIoxymethyl]- thiophene-3-carboxylic acid
517.57 5-[3-Cyano-4-(3-methyl- [1 ,2,4]oxadiazol-5-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester
503.54 5-[3-Cyano-4-(3-methyl- [1,2,4]oxadiazol-5-yI)-6-(4- morpholiπ-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid
628.45 3-[3-Cyano-4-isoxazoI-3-yl-6- (4-morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-5- iodo-thiophene-2-carboxylic acid methyl ester
672.5 3-[3-Cyano-4-(5-ethoxy- oxazol-2-yl)-6-(4-morpholin- Y 4-yl-phenyl)-pyridin-2- yloxymethyl]-5-iodo-
Figure imgf000105_0002
thiophene-2-carboxylic acid methyl ester l-6-
ic
Figure imgf000106_0001
658.48 3-[3-Cyanc~4-(5-ethoxy- oxazol-2-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-5-iodc~ thiophene-2-carboxylic acid
628.45 3-[3-Cyano-4-(3-methyl- isoxazol-5-yl)-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-5-iodo- thiophene-2-carboxylic acid
544.59 4-Acetyl-5-[3-cyano-4- isoxazol-3-yl-6-(4-morpholin- 4-yl-phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid methyl ester
558.62 4-Acetyl-5-[3-cyano-4-(3- methyl-isoxazol-5-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester
588.64 4-Acetyl-5-[3-cyano-4-(5- ethoxy-oxazol-2-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester
574.62 4-Acetyl-5-[3-cyano-4-(5- methoxy-oxazol-2-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]- thiophene-2-carboxylic acid methyl ester
516.58 4-Amino-3-[3-cyanc~4-furan- 3-yl-6-(4-morpholin-4-yl- phenyl)-pyridin-2- yloxymethyl]-thiophene-2- carboxylic acid methyl ester
588.64 3-[3-Cyano-4-furan-3-yl-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yIoxymethyl]-4- ethoxycarbonylamino- thiophene-2-carboxylic acid methyl ester
611.48 5-Bromo-4-[3-cyano-4-(5- methoxy-oxazoI-2-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000106_0002
thiophene-3-carboxylic acid methyl ester 597.45 5-Bromo-4-[3-cyano-4-(5- methoxy-oxazol-2-yl)-6-(4- morpholin-4-yl-phenyl)- pyridin-2-yloxymethyl]-
Figure imgf000107_0001
thiophene-3-carboxylic acid
* M3 means HPLC method 2.
Example 19: Biological testing
Compounds of the present invention were tested for biological activity using the assay techniques below:
3 'processing/strand transfer combined assay :
A combined 3 '-processing/strand transfer assay procedure similar to that published (Ovenden et al. Phytochemistry. 2004 Dec;65(24):3255-9.) was used. This assay was adapted to a 96 well plate format. Briefly, 400 ng of the compound to be tested is incubated with 3OnM substrate DNA, consisting of annealed U5 LTR sequence oligonucleotides tagged with Digoxigenin (DIG; 5'-ACTGCTAGAGATTTTCCACACTGACTAAAAGGGTC-DIG-S') or biotin (5'-BiO-GACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGT-S') so that each substrate has either a DIG or Bio tag on opposite strands. Reactions are carried out for 2hrs at 37°C, products generated as a result of 3 'processing and strand transfer activity are bound to streptavidin plates and detected with using anti-DIG-alkaline phosphatase conjugate and p- nitro phenyl phosphate substrate.
Strand transfer specific assay: The strand transfer specific assay is of similar format to that of the 3 'processing/strand transfer combined assay except that it uses a biotinylated substrate that represents a pre- processed LTR end (5'-BiO-GACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA-S').
Inhibition of HIY replication:
Cells are seeded into 96 well microtitre plates at 50,000 cells per 50ul per well in RF-10 containing 2μg/mL polybrene (RF- 10/2). Compounds are prepared to 4 x final concentration in RF-10/2, and 30 μL added to cells. Virus (40 μL in RF-10/2 containing 1600 pfu) is added to each well or 40 μL RF-10/2 for negative controls and for assaying compound cytotoxicity. After 24 hrs, an additional 90 μL of media or media containing 1 x compound is added to each well. At 4 days post infection, 100 μL of media is removed from each well and replaced with 100 μl of fresh media with or without compound. Forty eight hours later supernatants are harvested and levels of extracellular p24 determined. Supernatants are diluted 1 in 10,000 and p24 levels assayed using the Vironostika p24 assay kit. EC5O is calculated as the concentration required to inhibit HIV p24 production to 50% that of no drug controls.
The results of the assays for four compounds of the present invention are presented below in which:
• IC50 (3'-ST) represents the assay results for the 3 'processing/strand transfer combined assay;
• IC5O (ST) represents the assay results for the strand transfer specific assay; and
• EC50 represents the results for the inhibition of HIV replication.
Table 7 depicts the "scoring system" used in the assays.
Table 7 Assay scoring system
Figure imgf000108_0001
Assay results
Figure imgf000109_0001
Na
IC50 (3'-ST) +++ IC50(ST)ND IC50 (3'-ST) +++
EC50+++ IC50(ST)ND EC50 +
Table 8: Further assay results
Figure imgf000109_0002
Figure imgf000110_0001
Figure imgf000111_0001
Throughout this specification the word "comprise", or variations such as "comprises" or "comprising", will be understood to imply the inclusion of a stated element, integer or step, or group of elements, integers or steps, but not the exclusion of any other element, integer or step, or group of elements, integers or steps.
All publications mentioned in this specification are herein incorporated by reference. Any discussion of documents, acts, materials, devices, articles or the like which has been included in the present specification is solely for the purpose of providing a context for the present invention. It is not to be taken as an admission that any or all of these matters form part of the prior art base or were common general knowledge in the field relevant to the present invention as it existed anywhere before the priority date of each claim of this application.
It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the specific embodiments without departing from the spirit or scope of the invention as broadly described. The present embodiments are, therefore, to be considered in all respects as illustrative and not restrictive.

Claims

1. A method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000112_0001
X is selected from -O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and C1-3alkyl;
n is O or 1;
A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, C^oarylQ.salkyl, -C1-1OaIkVl-O-C1-1OaIkVl, heterocyclyl, hetereoaryl, Q-ioalkyl, C1-10alkoxy, C2-1oalkenyl, C2-1oalkynyl, C3-10cycloalkyl, -NR5R6, -C6arylNR5R6, -C6aryl-SO2-NR.5R6, -Cearyl-heterocyclyl, -C6aryl-SO2-heterocyclyl; -heteroaryl-Rto; -Z-C1-6alkylene-SO2-R12, -Z-(C2H4O)P-R12,
or R1 and R11 are joined together to form a C3-4alkylene; R2 is selected from the group consisting of hydrogen, C6-1oaryl, C6-10arylC1-3alkyl, heterocyclyl, hetereoaryl, C1-loalkyl, C2-10alkenyl, C2-10alkynyl, C3-10CyClOaIlCyI and - NR5R6, -heteroaryl-Cδ-ioaryl, -heteroaryl-heteroaryl;
R3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NRsR6, -CH2NR5R6, -C(O)R7 and -CO2R7;
Z is absent or is selected from the group consisting of NR5, 0, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen, C1-loalkyl, C3-6cycloaklyl, C6-loarylC1-3alkyl and C6-loaryl;
R7 is hydrogen or C1-1OaUCyI
R12 is hydrogen or C1-1OaUCyI;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10alkyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
Rg is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R10;
R10 is selected from OH, -Cl-lOalkyl, -OC1-10alkyl, -OC2-10alkenyl, and - Y-heteroaryl; and
Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, Q.ioalkyl, C1-10alkoxy; or R1 and R11 are joined together to form a C3-4alkylene.
2. A method according to claiml wherein R1 is selected from the group consisting of C6-10aryl and heteroaryl.
3. A method according to claim 1 or claim 2 wherein R2 is selected from the group consisting of C6-10aryl and heteroaryl.
4. A method according to any one of claims 1 to 3 wherein n is 1.
5. A method according to any one of claims 1 to 4 wherein R11 is hydrogen.
6. A method according to any one of claims 1 to 5 wherein A is phenyl.
7. A method according to any one of claims 1 to 5 wherein A is pyrdinyl.
8. A method according to any one of claims 1 to 5 wherein A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene. Preferably, the heteroaryl is 2,5-substituted.
9. A method according to claim wherein the compound of formula I is selected from the group consisting of:
Figure imgf000114_0001
10. A method according to claim wherein the compound of formula I is selected from the group consisting of:
Figure imgf000115_0001
Figure imgf000116_0001
11. A compound of formula I according to claim 1 selected from the group consisting of:
Figure imgf000117_0001
Na+
12. A compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000117_0002
X is selected from -O-, -S-, -S(O)-, -S(O2)-and NR4;
R4 is selected from H and C^aUcyl;
n is O or 1; A is C6aryl or heteroaryl;
R1 is selected from the group consisting of hydrogen, halo, C6-1oaryl, Q-ioarylCi-salkyl, -Cuoalkyl-O-Ci-ioalkyl, heterocyclyl, hetereoaryl, Ci-ioalkyl, C1-10alkoxy, C2-10alkenyl, C2-ioalkynyl, C3.10cycloa.kyl, -NRsR6, -C6arylNR5R6, -C6aryl-Sθ2-NRsR6, -Cβaryl-heterocyclyl, -C6aryl-Sθ2-heterocyclyl; -heteroaryl-Rio;
Figure imgf000118_0001
or R1 and R11 are joined together to form a C3-4alkylene;
R2 is selected from the group consisting of hydrogen, C6-1oaryl, C6-1oarylC1-3alkyl, heterocyclyl, hetereoaryl, Cuoalkyl, C2-1oalkenyl, C2-1oalkynyl, C3_iocycloalkyl and - NR5R6, -heteroaryl-Ce-ioaryl, -heteroaryl-heteroaryl;
R3 is selected from the group consisting of hydrogen, cyano, halo, -NO2, -C(O)NRsR6, -CH2NR5R6, -C(O)R7 and -CO2R7;
Z is absent or is selected from the group consisting of NR5, O, S, S(O), S(O2);
p is 1 to 3;
R5 and R6 are each independently selected from the group consisting of hydrogen, C1-1OaUCyI, C3.ecycl0ald.yl, C6-ioarylC1-3alkyl and C6-1oaryl;
R7 is hydrogen or C1-1OaUCyI
R12 is hydrogen or Ci-1OaUCyI;
R8 is zero to two substituents each independently selected from the group consisting of -OH, -SO2NH2, -OC(O)R7, -CO2R7, C1-10aUcyl, C1-10alkoxy, halo, -NO2, and -NR5R6;
R9 is selected from the group consisting of hydrogen, cyano, -SO2NH2, -R1O, and -C(O)R10;
R1O is selected from OH, -Cl-10aUcyl, -OC1-1OaUCyI, -OC2-1oalkenyl, and - Y-heteroaryl; and Y is absent or is selected from -O- and -NR4-
R11 is selected form the group consisting of hydrogen, C1-1OaIlCyI, C1-10alkoxy; or R1 and R11 are joined together to form a C3-4alkylene.
13. A compound according to claim 12 wherein R1 is selected from the group consisting of C6-1oaryl and heteroaryl.
14. A compound according to claim 13 wherein R2 is selected from the group consisting of C6-1oaryl and heteroaryl.
15. A compound according to any one of claims 12 to 14 wherein n is 1.
16. A compound according to any one of claims 12 to 15 wherein R11 is hydrogen.
17. A compound according to any one of claims 12 to 16 wherein A is phenyl.
18. A compound according to any one of claims 12 to 16 wherein A is pyrdinyl.
19. A compound according to any one of claims 12 to 16 wherein A is heteroaryl selected from the group consisting of pyrrolidinyl, furanyl, and thiophene.
20. A compound according to claim 12 selected from the group consisting of:
Figure imgf000119_0001
Figure imgf000120_0001
21. A compound according to claim 12 selected from the group consisting of:
Figure imgf000120_0002
Figure imgf000121_0001
Figure imgf000122_0001
22. A compound according to claim 12 selected from the group consisting of:
Figure imgf000122_0002
Na
23. A pharmaceutical composition comprising a compound according to any one of claims 12 to 22 and a pharmaceutically acceptable carrier, diluent or excipient.
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Cited By (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009080198A1 (en) * 2007-12-20 2009-07-02 Bayer Schering Pharma Aktiengesellschaft Fused cynopryridines and the use thereof
WO2009087212A2 (en) * 2008-01-11 2009-07-16 Novartis Ag Pyridine derivatives
WO2010007756A1 (en) * 2008-07-14 2010-01-21 塩野義製薬株式会社 Pyridine derivative having ttk inhibition activity
US8586751B2 (en) 2009-06-12 2013-11-19 Bristol-Myers Squibb Company Nicotinamide compounds useful as kinase modulators
WO2018146472A1 (en) 2017-02-07 2018-08-16 Oblique Therapeutics Ab Hydrocarbylsulfonyl-substituted pyridines and their use in the treatment of cancer
WO2018146469A1 (en) 2017-02-07 2018-08-16 Oblique Therapeutics Ab Heteroarylsulfonyl-substituted pyridines and their use in the treatment of cancer
EP2576540B1 (en) * 2010-05-26 2019-09-04 Sunovion Pharmaceuticals Inc. Heteroaryl compounds and methods of use thereof
US10899710B2 (en) 2015-08-07 2021-01-26 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Pyridines and their use in the treatment of cancer
US11168068B2 (en) 2016-07-18 2021-11-09 Janssen Pharmaceutica Nv Tau PET imaging ligands
US11168069B2 (en) 2017-02-07 2021-11-09 Oblique Therapeutics Ab Heterocyclylsulfonyl-substituted pyridines and their use in the treatment of cancer
US11208384B2 (en) 2017-02-07 2021-12-28 Oblique Therapeutics Ab Sulfinylpyridines and their use in the treatment of cancer

Families Citing this family (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE102006042143A1 (en) * 2006-09-08 2008-03-27 Bayer Healthcare Aktiengesellschaft Novel substituted bipyridine derivatives and their use
DE102006056740A1 (en) * 2006-12-01 2008-06-05 Bayer Healthcare Ag Cyclic substituted 3,5-dicyano-2-thiopyridines and their use
DE102006056739A1 (en) * 2006-12-01 2008-06-05 Bayer Healthcare Ag Substituted 4-amino-3,5-dicyano-2-thiopyridines and their use
DE102007035367A1 (en) 2007-07-27 2009-01-29 Bayer Healthcare Ag Substituted aryloxazoles and their use
DE102007036076A1 (en) 2007-08-01 2009-02-05 Bayer Healthcare Aktiengesellschaft Dipeptoid Produgs and their use
DE102007061763A1 (en) * 2007-12-20 2009-06-25 Bayer Healthcare Ag Substituted azabicyclic compounds and their use
DE102008013587A1 (en) * 2008-03-11 2009-09-17 Bayer Schering Pharma Aktiengesellschaft Heteroaryl-substituted dicyanopyridines and their use
ES2428818T3 (en) * 2008-05-29 2013-11-11 Bayer Intellectual Property Gmbh Dicianopyridines substituted with 2-alkoxy and their use
DE102008062567A1 (en) 2008-12-16 2010-06-17 Bayer Schering Pharma Aktiengesellschaft Dipeptoid prodrugs and their use
DE102009006602A1 (en) * 2009-01-29 2010-08-05 Bayer Schering Pharma Aktiengesellschaft Alkylamino-substituted dicyanopyridines and their amino acid ester prodrugs
JP2013525367A (en) 2010-04-23 2013-06-20 キネタ・インコーポレイテツド Antiviral compounds
DE102010030688A1 (en) 2010-06-30 2012-01-05 Bayer Schering Pharma Aktiengesellschaft Substituted dicyanopyridines and their use
US20120058983A1 (en) 2010-09-02 2012-03-08 Bayer Pharma Aktiengesellschaft Adenosine A1 agonists for the treatment of glaucoma and ocular hypertension
BR112015004284A2 (en) * 2012-08-30 2017-07-04 Nippon Shinyaku Co Ltd pyridine derivative and medicine
ES2948192T3 (en) 2013-06-27 2023-09-01 Pfizer Heteroaromatic compounds and their use as dopamine D1 ligands
JP2017508467A (en) * 2014-03-14 2017-03-30 アンデス バイオテクノロジーズ ソシエダード アノニマAndes Biotechnologies S.A. Pharmaceutical composition comprising RNA for treating cancer and use thereof

Non-Patent Citations (8)

* Cited by examiner, † Cited by third party
Title
ABDALLA M. ET AL.: "Synthesis and reaction of 3-cyano-2-(1H)-pyridones", PAKISTAN JOURNAL OF SCIENTIFIC AND INDUSTRIAL RESEARCH, vol. 20, no. 3, 1977, pages 139 - 149, XP008062289 *
BOMIKA Z. ET AL.: "Alkylation of 3-cyano-2-oxopyridine derivatives", CHEMISTRY OF HETEROCYCLIC COMPOUNDS, vol. 12, no. 8, 1976, pages 899 - 902, XP008129538 *
ESSAWY A. ET AL.: "Synthesis and some reactions of 3-cyano-4-phenyl-6[1'(2'-methoxynaphthalenyl)]-2-pyridone", REVUE ROUMAINE DE CHIMIE, vol. 26, no. 8, 1981, pages 1141 - 1148, XP008129537 *
KATRITZKY A.R. ET AL.: "1-(Chloromethyl)-3,5-dimethylpyrazole hydrochloride. A useful synthetic intermediate", CANADIAN JOURNAL OF CHEMISTRY, vol. 67, no. 7, 1989, pages 1144 - 1147, XP001007997 *
SAMMOUR A. ET AL.: "Some Reactions of the 2-(1H)-pyridones prepared from 4,4-dimethoxychalcone and anisal acetone", UNITED ARAB REPUBLIC JOURNAL OF CHEMISTRY, vol. 14, no. 6, 1971, pages 581 - 598, XP008129421 *
SAMMOUR A. ET AL.: "Studies on Chalcones, Condensation with ethyl cyanoacetate and malononitrile in presence of ammonium acetate", JOURNAL OF CHEMISTRY, vol. 13, no. 4, 1970, pages 421 - 437 *
SAYED G.H. ET AL.: "Studies on the Condensation Products of 1,3-Diaryl-2-propen-1-one with Ethyl cyanoacetate", JOURNAL OF THE CHEMICAL SOCIETY OF PAKISTAN, vol. 5, no. 3, 1983, pages 195 - 199, XP008129536 *
SHESTOPALOV A.M. ET AL.: "Cyclization of nitriles. IX. Syntheses based on 2-aryl-3-aroyl-1,1-dicyanopropanes", JOURNAL OF ORGANIC CHEMISTRY OF THE USSR, vol. 21, 1985, pages 1382 - 1401, XP008129562 *

Cited By (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009080198A1 (en) * 2007-12-20 2009-07-02 Bayer Schering Pharma Aktiengesellschaft Fused cynopryridines and the use thereof
JP2011506502A (en) * 2007-12-20 2011-03-03 バイエル・シェーリング・ファルマ・アクチェンゲゼルシャフト Condensed cyanopyridines and their use
WO2009087212A2 (en) * 2008-01-11 2009-07-16 Novartis Ag Pyridine derivatives
WO2009087212A3 (en) * 2008-01-11 2009-09-24 Novartis Ag Pyridine derivatives
JP2011509277A (en) * 2008-01-11 2011-03-24 ノバルティス アーゲー Pyridine derivatives
AU2009203681B2 (en) * 2008-01-11 2012-08-16 Novartis Ag Pyridine derivatives
US8343966B2 (en) 2008-01-11 2013-01-01 Novartis Ag Organic compounds
WO2010007756A1 (en) * 2008-07-14 2010-01-21 塩野義製薬株式会社 Pyridine derivative having ttk inhibition activity
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