WO2007054792A1 - Chimaeric hiv-1 subtype c gag-virus-like particles - Google Patents

Chimaeric hiv-1 subtype c gag-virus-like particles Download PDF

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WO2007054792A1
WO2007054792A1 PCT/IB2006/003155 IB2006003155W WO2007054792A1 WO 2007054792 A1 WO2007054792 A1 WO 2007054792A1 IB 2006003155 W IB2006003155 W IB 2006003155W WO 2007054792 A1 WO2007054792 A1 WO 2007054792A1
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sequence
seq
protein
virus
chimaeric
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Richard James Halsey
Fiona Lesley Tanzer
Anna-Lise Williamson
Edward Peter Rybicki
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South African Medical Research Council
University Of Cape Town
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/12Viral antigens
    • A61K39/21Retroviridae, e.g. equine infectious anemia virus
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/12Viral antigens
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/525Virus
    • A61K2039/5258Virus-like particles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/54Medicinal preparations containing antigens or antibodies characterised by the route of administration
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/545Medicinal preparations containing antigens or antibodies characterised by the dose, timing or administration schedule
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2740/00Reverse transcribing RNA viruses
    • C12N2740/00011Details
    • C12N2740/10011Retroviridae
    • C12N2740/16011Human Immunodeficiency Virus, HIV
    • C12N2740/16211Human Immunodeficiency Virus, HIV concerning HIV gagpol
    • C12N2740/16222New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2740/00Reverse transcribing RNA viruses
    • C12N2740/00011Details
    • C12N2740/10011Retroviridae
    • C12N2740/16011Human Immunodeficiency Virus, HIV
    • C12N2740/16211Human Immunodeficiency Virus, HIV concerning HIV gagpol
    • C12N2740/16234Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2750/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14141Use of virus, viral particle or viral elements as a vector
    • C12N2750/14143Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector

Definitions

  • the invention relates to a method of constructing chimaeric virus-like particles (VLPs) based on the human immunodeficiency virus (HIV) Gag protein, in particular for vaccine purposes.
  • VLPs chimaeric virus-like particles
  • HAV human immunodeficiency virus
  • HIV is one of the greatest problems facing centuries in the 21 st century, with about 15 000 new infections daily, particularly in Sub-Saharan Africa where subtype C predominates 31 .
  • highly active anti-retroviral therapy HAART
  • AIDS acquired immunodeficiency syndrome
  • VLPs Vaccine approaches for more than 30 different viruses, including hepatitis B virus and human papilloma virus 7 , have included the production of VLPs.
  • VLPs There are a number of advantages to using VLPs: 8 • They can be produced to relatively high yield in heterologous systems, where protocols are well established and can be purified from expression system culture supernatants by a variety of methods, including centrifugation and column fractionation.They are non- replicative and non-infectious, which reduces some safety concerns.
  • Expression systems established to date for production of HIV-1 VLPs include:
  • the vertebrate immune system responds well to particulate antigens of viral size.
  • VLP preparations are essentially homogeneous with regard to specific antigen composition, cross clade reactivity is likely to be difficult to achieve. This is, however, common to most HIV vaccination strategies.
  • VLPs can activate the innate immune system through 'danger signals' and lead to dendritic cell (DC) maturation and increased cytokine production 30 .
  • DC dendritic cell
  • This is thought to be a result of the particulate nature of VLPs and residual components of the host/cell-system used in production.
  • An example of this would be co-purified baculovirus in the insect culture system.
  • humoral responses have been generated in mice 4 , rabbits 634 and rhesus macaques. However the antibodies produced were generally either weak or non-neutralizing.
  • Gag VLPs have the potential to act as an antigen carrier or delivery system, where the Gag essentially acts as a scaffold for the insertion or attachment of foreign antigens.
  • Gag VLPs The inclusion of foreign antigens (epitopes, polypeptides or folded proteins) into Gag VLPs can be roughly grouped into three classes, designated here as ⁇ -, ⁇ and ⁇ -VLPs.
  • ⁇ -VLPs involve integrating the antigen into the Pr55 gas itself, either by direct insertion into the Gag sequence, replacing non-essential portions of Gag or as a C-terminal fusion; yielding a chimaeric protein that forms the functional unit of the VLP.
  • proteins When proteins are incorporated on the outside of the particle it is termed a ⁇ -VLP.
  • a y- VLP would be the synergy of the ⁇ - and ⁇ - types.
  • ⁇ -VLPs have received the most attention, since trimeric envelope glycoprotein (env) is a major target of neutralizing antibodies 28 .
  • env trimeric envelope glycoprotein
  • Initial difficulties with insufficient Env incorporation have been mostly solved by the deletion of part of the cytoplasmic domain gp41 , or replacement of it with heterologous membrane anchors 6 .
  • Studies in rodents and non-human primates have shown encouraging humoral and cellular responses but without neutralizing antibody production 7 . See Demi et al 2004 for an extensive analysis. , ⁇
  • chimaeric Gag ⁇ -VLPs based on the integration and C-terminal fusion approach have been limited to short peptides and epitopes of less than 200 amino acids; such as the V3 loop from external glycoprotein gp120 11 ' 16 ' 17 ' 33 _ a CD4 binding domain 1629 and a Nef-protein derived epitope 35f36 .
  • These studies generally reported high titre antibody responses (but with negligible neutralizing activity) in mice and rabbits to the Pr55 gag carrier but substantially lower responses to the inserted antigen.
  • the maximum size of inserted or C-terminally fused epitopes is at most around 200 amino acids 7 . It is also recognized that both the location of the insert and the nature of the insert itself affect the formation of VLPs from these recombinant proteins 7 .
  • HIV human immunodeficiency virus kDa kilo Dalton ml millilitre myr + N-terminal myristoylation positive myr " N-terminal myristoylation negative
  • a method of producing immunogenic chimaeric proteins which self-assemble into virus-like particles including the steps of fusing a first DNA sequence encoding a HIV-1 subtype C protein sequence or portion thereof of greater than 200 amino acids to a second DNA sequence encoding at least p17 and p24 of a Gag protein by a direct in-frame C-terminal fusion, infecting a host cell with a vector containing the fused sequence, and causing expression of the chimaeric protein encoded by the fused sequence.
  • the chimaeric protein assembles spontaneously at the cell membrane and buds externally to form a virus-like particle (VLP) that resembles an immature HIV virion. These virus-like particles may be recovered for use in a vaccine.
  • VLP virus-like particle
  • the DNA sequences for both the Gag protein and the HIV protein may be human codon optimised
  • the gag DNA sequence may be the full-length gag sequence, or may be a truncated gag sequence, for example, a p6-truncated gag sequence, such as the nucleotide sequences of any one of SEQ I. D. Nos. 1 to 5 (or the corresponding amino acid sequences of SEQ I. D. Nos. 6 to 9), or a sequence which is at least 80%, 90% or 95% identical thereto.
  • a p6-truncated gag sequence such as the nucleotide sequences of any one of SEQ I. D. Nos. 1 to 5 (or the corresponding amino acid sequences of SEQ I. D. Nos. 6 to 9), or a sequence which is at least 80%, 90% or 95% identical thereto.
  • the first DNA sequence may be a reverse transcriptase sequence, a tat sequence or a nef sequence, or a combination thereof. These sequences may be modified to be non-functional for stability and safety purposes, such as by mutation, shuffling and/or truncation.
  • the first DNA sequence may be the nucleotide sequence of any one of SEQ I. D. Nos. 10, 12, 14, 16, 18, 40 or 42 (or the corresponding amino acid sequences of SEQ I. D. Nos. 11, 13, 15, 17, 41 or 43), or a sequence which is at least 80%, 90% or 95% identical thereto.
  • the fused sequence may have a nucleotide or amino acid sequence of SEQ I. D. Nos. 20 to 39, or a sequence which is at least 80% identical thereto, or more preferably at least 90% identical thereto, or even more preferably, at least 95% identical thereto.
  • the host cell may be a human, animal or insect cell, wherein the insect cell may be infected by the baculovirus expression system
  • the chimaeric protein typically forms budded particles or virus-like particles including up to about 1 000 amino acids, and especially up to about 800 amino acids, of the first protein. These budded or virus-like particles may have a particle size of between about 100nm and about 450nm in diameter.
  • a chimaeric virus-like particle or budded particle produced by the method described above.
  • a vaccine or pharmaceutical composition including a chimaeric virus-like particle or budded particle or mixtures thereof as described above.
  • the vaccine or pharmaceutical composition may be for the treatment or prophylaxis of HIV or AIDS.
  • a method of treating or preventing HIV infection in a mammal including the steps of administering to the mammal a pharmaceutical composition, and in particular a vaccine, including chimaeric budded or virus-like particles or mixtures thereof as described above.
  • a fifth embodiment of the invention there is provided the use of budded or virus- like particles or mixtures thereof as described above in a method of making a pharmaceutical composition, and in particular a vaccine, for the treatment or prophylaxis of HIV or AIDS.
  • FIG. 1 Schematic representation depicting shuffling of tat in pTHgrttnC
  • FIG. 2 Schematic representation of chimaeric Gag constructs.
  • FIG. 3 Nucleotide and amino acid sequences inserted into constructs
  • FIG. 4 Amino acid sequences of chimaeric full-length Gag constructs
  • the 5 chimaeric Gag sequences shown are the constructs containing full-length Gag.
  • the sequences of the corresponding constructs containing p6-truncated Gag are identical but without the sequence shown in bold (Sequence I. D. Nos. 8 and 9).
  • Amino acid position numbers are shown on the left and sequence identifiers on the right, (a) HMgag3 ' RT - humanized myristoylated Gag fused to 3 ' end of RT gene (Sequence I. D. Nos. 11, 21 and 23); (b) HMgag3TN - Gag fused to 3 ' end of Tat-Nef polygene fragment (Sequence LD. Nos.
  • HMgagTN - Gag fused to Tat-Nef polygene fragment (Sequence LD. Nos. 29, 31, 41 and 43); (d) HMgagRT - Gag fused to RT gene (Sequence LD. Nos. 33, 35 and 17); (e) HMgagRTTN - Gag fused to RT-Tat-Nef polygene fragment (Sequence LD. Nos. 37, 39 and 19).
  • FIG. 5 DNA sequences of chimaeric full-length Gag constructs
  • the 5 chimaeric gag sequences shown are the constructs encoding full-length Gag.
  • the sequences of the corresponding constructs encoding p6-truncated Gag are identical but without the sequence shown in bold (Sequence LD. Nos. 2 to 5).
  • Nucleotide position numbers are shown on the left, (a) HMgag3'RT - encoding humanized myristoylated Gag fused to 3 ' end of RT gene (Sequence LD. Nos. 20, 22 and 10); (b) HMgag3TN - encoding Gag fused to 3 ' end of Tat-Nef polygene fragment (Sequence LD. Nos.
  • HMgagTN - encoding Gag fused to Tat-Nef polygene fragment (Sequence LD. Nos. 28, 30, 14, 40 and 42); (d) HMgagRT - encoding Gag fused to RT gene (Sequence LD. Nos. 32, 34 and 16); (e) HMgagRTTN - encoding Gag fused to RT-Tat-Nef polygene fragment (Sequence LD. Nos. 36, 38 and 18), sequence identifiers are indicated above the relevant section of the DNA sequence.
  • FIG. 6 Western blots of control Gag proteins in High Five TM cell pellets and supernatants
  • High 5 cells were infected with recombinant baculovirus expressing 4 control Gag proteins.
  • Three days post infection cell pellets were collected and equal amounts of cell lysate (CL) or equal volumes of culture supernatant (SUP) were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432) Lanes: M, Molecular weight marker; 1, HMgagC CL; 2, HMgagC SUP; 3, H ⁇ MgagC CL; 4, H ⁇ MgagC SUP; 5, THMgagC CL; 6, THMgagC SUP; 7, TH ⁇ MgagC CL; 8, TH ⁇ MgagC SUP; 9, Baculovirus only CL. Arrowheads indicate the full and truncated Gag protein bands.
  • FIG. 7 Western blots of chimaeric Gag proteins in High 5 cell pellets
  • High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell pellets were collected and equal amounts of cell lysate were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432).
  • ARP432 anti-p24 polyclonal antiserum
  • FIG. ⁇ Western blots of chimaeric Gag proteins in High Five TM cell pellets
  • High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell pellets were collected and equal amounts of cell lysate were loaded in each lane. Blots were probed with anti-RT polyclonal antiserum (A, ARP428) and anti-nef monoclonal antibody (B, 01-003).
  • A Lanes: M, Molecular weight marker; 1, RT control protein; 2, HMgag3'RT; 3, THMgag3'RT; 4, HMgagRT; 5, THMgagRT; 6, HMgagRTTN; 7, THMgagRTTN; 8, HMgagC; 9 THMgagC.
  • FIG. 9 Western blots of Gag proteins in High 5 cell culture supernatant
  • High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell supernatants were collected and equal volumes were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432).
  • ARP432 anti-p24 polyclonal antiserum
  • FIG. 10 Western blots of Gag proteins in Sf21 cell culture supernatant
  • Sf21 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell supernatants were collected and equal volumes were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432).
  • ARP432 anti-p24 polyclonal antiserum
  • FIG. 11 VLPs and budded structures produced by chimaeric Gag proteins in Sf21 cells.
  • FIG. 12 Example of VLP band visible by trans-illumination after sucrose gradient sedimentation.
  • the arrow indicates the VLP band in the 30-70% sucrose gradient visible by trans-illumination, in this example THMgagC VLPs.
  • FIG. 13 Western blots of chimaeric Gag proteins in Sf9 particle purifications
  • VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
  • FIG. 14 Western blots of chimaeric Gag proteins in Sf9 particle purifications
  • VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
  • FIG. 15 Western blots of chimaeric Gag proteins in Sf9 particle purifications VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
  • FIG. 16 Schematic representation of HIV-1 Gag precursor protein with functional domains N-Terminus to the left.
  • FIG. 17 Response of mice to a prime with pTHgrttnC and a boost with Gag RT
  • VLPs immunogenic chimaeric virus-like particles
  • HAV human immunodeficiency virus
  • VLPs are essentially protein-based antigens that structurally resemble the pathogenic virus but are non-infectious and cannot replicate.
  • the structural protein Gag of HIV (or at least the portion encoding p17 and p24 thereof) forms the basis of the VLP, which produces particles of 100-140nm in diameter.
  • chimaeric Gag based VLPs To produce chimaeric Gag based VLPs, HIV-derived DNA sequences were fused to the 3' end of the gag gene sequence in order to produce chimaeric proteins and thus VLPs of the recombinant protein. Since chimaeric VLPs contain a greater range of HIV protein sequence, they generally elicit a broader immune response compared with Gag-only VLPs.
  • the chimaeric VLPs produced herein contain significantly larger protein fusions than previously reported, or were thought possible, i.e. VLPs containing fusion proteins having up to 778 C-terminal addition amino acids are described herein, whereas it was previously thought that it was not possible to obtain chimaeric VLPs with fusion proteins of greater than 200 amino acids.
  • the plasmids pTHgagC 32 and pTHgrrtnC 40 listed in Table 1 contain HIV-1 subtype C DNA sequences obtained from 2 individuals within three months of infection. These isolates (Du151 and Du422) were selected on having closest amino acid similarity to a South African subtype C consensus sequence 32 ' 38 .
  • Full length Gag (non-myristylated) is encoded by pTHgagC, while pTHgrttnC encodes a polyprotein of p6-truncated Gag (non-myristoylated), Reverse transcriptase (RT), shuffled Tat and Nef.
  • infected HEK 293 cell lysates contained full length GrttnC polyprotein (approximately 150 kDa) but no RT activity. Expression of a shuffled Tat-GFP was visualized in HLCD4-CAT indicator cells but no CAT activity was detectable - which was demonstrated with wild-type (functional) Tat-GFP. lmmunofluorescent labeling of infected cells with anti-Nef antibody showed cytoplasmic localization, whereas active Nef is localized to the cell membrane.
  • the encoding DNA sequence was assembled and transposed into baculovirus under the polyhedron promoter using the Bac-to-Bac ® Baculovirus Expression System (InvitrogenTM). The resulting recombinant baculovirus was used to infect Sf9, Sf21 and High FiveTM cells for expression of the protein in either monolayer or suspension culture. Electron microscopy together with Western blotting of cell lysates, culture supernatants and particle preparations was used to ascertain that the 10 Gag fusion constructs formed VLPs.
  • the 10 chimaeric Gag constructs all produced protein of the expected size in the cell lysates (Fig. 7A & B).
  • Fig 8A confirms that the RT fusions do indeed produce RT containing protein
  • Fig. 8B shows likewise for Nef.
  • Nef is C-terminal to the shuffled Tat, and so the presence of shuffled Tat can be inferred from the presence of the Nef.
  • Three days post-infection, 8 of the 10 chimaeric Gag proteins were visible in High FiveTM cell supernatant by western blot (Fig. 9A & B).
  • the -3 ' RT, -3TN and -TN fusions result in distinct VLPs as visible by EM (Fig. 11 E-J) and the -RT and -RTTN fusions produce budded structures which appear to be not as defined in structure as classic VLPs.
  • the data from the western blots and EM shows that expression of each construct leads to that protein being present in culture supernatant and that VLPs or budded particles are produced. Since there are some specific breakdown products visible in the supernatant for some of the constructs (Fig. 9A & B), particularly those containing shuffled Tat and Nef regions, gradient preparations were analysed to ascertain if the predominant protein is indeed the full-length one.
  • Fig. 17 shows good preliminary evidence that chimaeric Gag-based VLPs containing RT sequences can be used to boost appropriate cellular immune responses - by both CD4+ and CD8+ T cells - in mice primed with a Gag-RT-Tat-Nef -encoding DNA vaccine.
  • Table 1 Raw materials: plasmids and cloning vectors
  • pTHgrttnC polygene encoding p6-truncated Gag, Reverse J. van transcriptase (RT), shuffled Tat and inactivated Nef (TN) Harmelen 1
  • pFastBacTMDual Used for cloning protein sequences to be transposed into Invitrogen 3 baculovirus 1. Institute for Infectious Diseases and Molecular Medicine, Division of Medical Virology, University of Cape
  • HMgagFI The 5 ' end of the gag gene in pTHgagC (van Harmelen et al., 2003) was PCR amplified with primers HMgagFI (5 ' -CTT GCC ACC ATG GGT GCT CGC GCA TC-3 ' ) and HMgagRI (5 ' - GGT GTC CTC CCA CTG TTC AGC ATA GTG TTC-3 ' ); where HMgagFI restores the myristoylation signal (ala2 ⁇ gly2) at the N-terminus of the protein.
  • This initial PCR product was used as template in a second PCR reaction with HMgagF2 (5 ' -ATT AGG ATC CAA GCT TGC CAC CAT GGG TGC-3') and HMgagRI where a BamH ⁇ site is introduced upstream of the start codon.
  • This second PCR product was cloned into pGEM® - T easy.
  • HMgagF3 5 ' -GCG AAG GCG CCA CTC CTC-3 '
  • HMgagR2 5 ' -CTT GAA TTC TTG GCT GAG GGG GTC GCT AC-3 '
  • This PCR product was cloned into pGEM® - T easy.
  • pGEM-3 ' THgag 3837bp
  • the 3 ' end of the gag gene in pTHgagC was PCR amplified with primers HMgagF3 (5 ' -GCG
  • pFBD-5'HMgag (5817bp)
  • pGEM-5'HMgag was digested with BamHl and EcoRI and the resulting 601 bp fragment was cloned into pFastBacTMDual digested with the same enzymes.
  • pFBD- THMgagNS 6560bp
  • pTHRepgrttnC Bourgers et a/., 2006
  • pFBD- HMgagNS (671 Obp)
  • pGEM-3 ' HgagNS was digested with Na ⁇ and EcoRI and the resulting 953bp fragment was cloned into pFBD-5 ' HMgag digested with the same enzymes.
  • All pFastBacTMDual constructs contain HIV1-C protein sequences cloned into the multiple cloning site (MCS) of the polyhedron promoter present in this vector. All protein sequences have an in-frame stop codon at the 3'-end of the sequence.
  • MCS multiple cloning site
  • pFBD-HMgagC (6713bp) pTHgagC was digested with Na ⁇ and EcoRI and the resulting 956bp fragment was cloned into pFBD-5 ' HMgag digested with the same enzymes.
  • pFBD-THMgagC (6563bp) pGEM-3 ' THgag was digested with Na ⁇ and EcoRI and the resulting 806bp fragment was cloned into pFBD-5'HMgag digested with the same enzymes.
  • pFBD-H ⁇ MgagC (6707bp)
  • pFBD-HMgagC and pTHgagC were digested with Na ⁇ and Hind ⁇ , yielding 1027bp and 535bp fragments respectively. Both these fragments were" sequentially cloned into pFBD-HMgagC digested with Hin ⁇ only.
  • pFBD-TH ⁇ MgagC (6557bp) pFBD-THMgagC and pTHgagC were digested with Na ⁇ and Hind ⁇ , yielding 877bp and 535bp fragments respectively. Both these fragments were sequentially cloned into pFBD-THMgagC digested with Hind ⁇ only.
  • pFBD-HMgag3 ' RT (6997bp) pTHRepgrttnC was digested with Alw44 ⁇ and blunted with mung bean nuclease. Further digestion with Not] gave a 314bp fragment that was cloned into pFBD-HMgagNS digested with Sful and Nott .
  • pFBD-THMgag3 ' RT (6847bp) pTHRepgrttnC was digested with Alw44 ⁇ and blunted with mung bean nuclease. Further digestion with Not ⁇ gave a 314bp fragment that was cloned into pFBD-THMgagNS digested with Sful and ⁇ /ofl .
  • pFBD-HMgag3TN (7176bp) pTHRepgrttnC was digested with Na ⁇ and blunted with Klenow enzyme. Further digestion with Xba ⁇ gave a 506bp fragment that was cloned into pFBD-HMgagNS digested with Sful and Xba ⁇ .
  • pFBD-THMgag3 ' TN (7026bp) pTHRepgrttnC was digested with Na ⁇ and blunted with Klenow enzyme. Further digestion with Xba ⁇ gave a 506bp fragment that was cloned into pFBD-THMgagNS digested with Sful and Xba ⁇ .
  • pFBD-HMgagTN (7635bp) pTHRepgrttnC was digested with ⁇ /col and blunted with Klenow enzyme. Further digestion with Xba ⁇ gave a 965bp fragment that was cloned into pFBD-HMgagNS digested with SM and Xba ⁇ .
  • pFBD-THMgagTN (7485bp) pTHRepgrttnC was digested with ⁇ /col and blunted with Klenow enzyme. Further digestion with
  • Xba ⁇ gave a 965bp fragment that was cloned into pFBD-THMgagNS digested with Sful and Xba ⁇ .
  • pFBD-HMgagRT 8035bp
  • pTHRepgrttnC was digested with EcoRI and Nott and the resulting 1361bp fragment was cloned into pFBD-HMgagNS digested with the same enzymes.
  • the stop codon (TAG) is 18bp downstream of RT gene.
  • pFBD-THMgagRT (7885bp) pTHRepgrttnC was digested with EcoRI and Nott and the resulting 1361bp fragment was cloned into pFBD-THMgagNS digested with the same enzymes.
  • the stop codon (TAG) is 18bp downstream of RT gene.
  • pFBD-HMgagRTTN (9047bp) pTHRepgrttnC was digested with EcoRI and the resulting 2337bp fragment was cloned into pFBD-HMgagNS digested with the same enzyme.
  • pFBD-THMgagRTTN (8897bp) pTHRepgrttnC was digested with EcoRI and the resulting 2337bp fragment was cloned into pFBD-THMgagNS digested with the same enzyme.
  • pFBD-H ⁇ MgagC and pFBD-TH ⁇ MgagC were sequenced with the primer FBDS1 (5 ' - TAA AGG TCC GTA TAC TCC GG-3 ' ) to confirm the gag sequence does not contain the myristoylation signal.
  • Sf21 and Sf9 insect cells derived from the fall army worm, Spodoptera frugiperda
  • High FiveTM cells derived from the cabbage looper, T ⁇ choplusia ni
  • Sf21 cells were grown at 27 0 C in TC-100 Insect medium (Sigma) supplemented with: 10% (v/v) foetal bovine serum (FBS), 50 ⁇ g/ml neomycin, 69.2 ⁇ g/ml Penicillin G and 100 ⁇ g/ml Streptomycin.
  • FBS foetal bovine serum
  • Sf9 cells were grown under the same conditions with the addition of 0.1% Pluronic ® F-68 (Sigma): a surfactant to decrease membrane shearing in suspension culture. Glassware was prepared by coating with Repelcote (VWR International Ltd, Poole, UK), washing with detergent, autoclaving and baking at 200 0 C for 2 hr. Cultures were incubated in a rotary shaker at 120 RPM. For expression of proteins in serum-free media, High FiveTM cells were grown in Express Five ® media (Gibco) with 10 ⁇ g/ml Gentamycin and 18mM L-glutamine.
  • bacmid DNA was extracted using a modified alkaline lysis method. Sf21 cells (1 x 10 6 ) were seeded in sterile 35mm 2 tissue culture wells and transfected with recombinant bacmid DNA and CellfectinTM (InvitrogenTM) and recombinant baculovirus (Autographa californica nuclear polyhedrosis virus) was amplified by repeated passages.
  • Protein samples were diluted in 5x loading buffer 14 , heated at 9O 0 C for 5 min and separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis 26 (SDS-PAGE).
  • SDS-PAGE sodium dodecyl sulphate polyacrylamide gel electrophoresis 26
  • proteins were transferred to nitrocellulose membranes (NitroBind, Osmonics Inc.) using a Trans Blot ® semi-dry transfer cell (Bio-Rad). Membranes were then soaked in blocking buffer [3% (w/v) bovine serum albumen (BSA) and 0.1% (v/v) Tween 20 in PBS] overnight and probed with appropriate primary antibodies (Table 1) for 4 hr.
  • BSA bovine serum albumen
  • Tween 20 0.1%
  • NIH AIDS Research & Reference Reagent Programme McKesson BioServices Corporation, Germantown, USA. 3. National Institute for Biological Standards and Control (NIBSC), Centralised Facility for AIDS Reagents, Medical Research Council (MRC), United Kingdom (UK).
  • NIBSC National Institute for Biological Standards and Control
  • MRC Centralised Facility for AIDS Reagents
  • UK United Kingdom
  • Gag Mouse 1 500 Monoclonal antibody to HIV-1 p55/p24 ARP319 L. Maaheim 1
  • NEBSC National Institute for Biological Standards and Control
  • MRC Medical Research Council
  • UK United Kingdom
  • Sf21 cells (1 x 10 6 ) were seeded into 35mm 2 tissue culture wells and infected with recombinant baculovirus. Cells were fixed 72hrs post-infection with 2.5% glutaraldehyde in PBS overnight and resuspended in low melting point agarose. Samples were post-fixed with 1% osmium tetroxide in PBS, dehydrated through an ethanol series and embedded in Spurrs resin. Ultrathin sections, cut with a Leica Reichert Ultracuts microtome, were mounted on copper grids and stained with 2% uranyl acetate for 10 min. After 5 washes in ultrapure water, samples were stained with Reynolds lead citrate for 10 min. Grids were then rinsed in a stream of ultrapure water, dried, and samples were visualized with a LEO 912 transmission electron microscope.
  • mice Two groups of mice were primed with pTHGrttnC (100 ⁇ g, im). Twenty eight days later one group was given an intraperitoneal inoculation of 20ng GagRT VLPs in a volume of 150 ⁇ l PBS. Mice were sacrificed on day 40 and splenocytes prepared. Immune responses to CD8 and CD4 epitopes in Gag and RT were investigated in a mouse IFN- ⁇ ELISPOT assay. A group of mice given just 20ng of GagRT VLPs did not show an immune response to Gag and RT (Fig. 17).
  • HIV-1 gag proteins diverse functions in the virus life cycle. Virology 251:1-15.
  • Hybrid human immunodeficiency virus Gag particles as an antigen carrier system induction of cytotoxic T-cell and humoral responses by a Gag:V3 fusion. J. Virol. 67:3191-3198.

Abstract

A method of producing immunogenic chimaeric proteins which self-assemble into virus-like particles is described. A first DNA sequence encoding a HIV-1 subtype C protein or portion thereof of greater than 200 amino acids is fused to a second DNA sequence encoding at least p17 and p24 of a Gag protein by a direct in-frame C-terminal fusion. A host cell is infected with a vector containing the fused sequence, and the chimaeric protein encoded by the fused sequence is expressed. The second DNA sequence may aalternatively be a full-length gag sequence or a truncated gag sequence. Examples of the first DNA sequence are provided for tat, nef and reverse transcriptase, and combinations thereof.

Description

CHIMAERIC HIV-1 SUBTYPE C GAG-VIRUS-LIKE PARTICLES
BACKGROUND OF THE INVENTION
The invention relates to a method of constructing chimaeric virus-like particles (VLPs) based on the human immunodeficiency virus (HIV) Gag protein, in particular for vaccine purposes.
HIV is one of the greatest problems facing mankind in the 21st century, with about 15 000 new infections daily, particularly in Sub-Saharan Africa where subtype C predominates 31. Although highly active anti-retroviral therapy (HAART) can prolong the survival of those infected with HIV, the progression to acquired immunodeficiency syndrome (AIDS) cannot be prevented at present. In addition, HAART (and other similar treatment regimes) is only economically feasible for treating high proportions of infected populations in the areas that are least affected by the pandemic, such as North America and Europe. These, together with numerous other socio-economic and medical reasons, highlight the need for effective and inexpensive HIV vaccines.
Vaccine strategies
Over the last 20 years a number of strategies have been developed toward producing HIV vaccines, and representatives from most of these are at various stages of clinical trial; however, there is still no vaccine on the market. The list includes live attenuated virus, whole killed virus, DNA vaccines, various recombinant viral and bacterial vectors, subunit protein vaccines and pseudovirions (including virus-like particles (VLPs)). Clearly there are merits and problems associated with each approach, and a number of recent reviews have investigated these concerns 2'15'18.
VLPs as vaccines
Vaccine approaches for more than 30 different viruses, including hepatitis B virus and human papilloma virus 7, have included the production of VLPs. There are a number of advantages to using VLPs: 8 • They can be produced to relatively high yield in heterologous systems, where protocols are well established and can be purified from expression system culture supernatants by a variety of methods, including centrifugation and column fractionation.They are non- replicative and non-infectious, which reduces some safety concerns. • Expression systems established to date for production of HIV-1 VLPs include:
COMFlRWiATlON COPY baculovirus, vaccinia virus, adenovirus and yeast systems.
• The vertebrate immune system responds well to particulate antigens of viral size.
• They have been shown to stimulate both humoral and cellular immune responses in rodents and non-human primates without addition of adjuvants, and may indeed act as adjuvants themselves.
• Efficient epitope presentation on MHC class I and -Il molecules and activation of antigen presenting cells (APCs).
• They can be incorporated as part of a prime boost vaccination strategy with DNA vaccines.
Disadvantages:
• Manufacture can be expensive and technically demanding.
• lmmunogenicity is comparatively weaker than related replicating vectors.
• Since VLP preparations are essentially homogeneous with regard to specific antigen composition, cross clade reactivity is likely to be difficult to achieve. This is, however, common to most HIV vaccination strategies.
HIV Gag VLPs
Recent studies have indicated that VLPs can activate the innate immune system through 'danger signals' and lead to dendritic cell (DC) maturation and increased cytokine production 30. This is thought to be a result of the particulate nature of VLPs and residual components of the host/cell-system used in production. An example of this would be co-purified baculovirus in the insect culture system. More classically, humoral responses have been generated in mice 4, rabbits 634 and rhesus macaques. However the antibodies produced were generally either weak or non-neutralizing.
Chimaeric HIV Gag VLPs
Gag VLPs have the potential to act as an antigen carrier or delivery system, where the Gag essentially acts as a scaffold for the insertion or attachment of foreign antigens.
The inclusion of foreign antigens (epitopes, polypeptides or folded proteins) into Gag VLPs can be roughly grouped into three classes, designated here as α-, β~ and γ-VLPs. α-VLPs involve integrating the antigen into the Pr55gas itself, either by direct insertion into the Gag sequence, replacing non-essential portions of Gag or as a C-terminal fusion; yielding a chimaeric protein that forms the functional unit of the VLP. When proteins are incorporated on the outside of the particle it is termed a β-VLP. Although not much has been reported on it in the literature, a y- VLP would be the synergy of the α- and β- types.
β-VLPs have received the most attention, since trimeric envelope glycoprotein (env) is a major target of neutralizing antibodies 28. Initial difficulties with insufficient Env incorporation have been mostly solved by the deletion of part of the cytoplasmic domain gp41 , or replacement of it with heterologous membrane anchors 6. Studies in rodents and non-human primates have shown encouraging humoral and cellular responses but without neutralizing antibody production 7. See Demi et al 2004 for an extensive analysis. ,
To date, chimaeric Gag α-VLPs based on the integration and C-terminal fusion approach have been limited to short peptides and epitopes of less than 200 amino acids; such as the V3 loop from external glycoprotein gp120 11'16'17'33_ a CD4 binding domain 1629 and a Nef-protein derived epitope 35f36. These studies generally reported high titre antibody responses (but with negligible neutralizing activity) in mice and rabbits to the Pr55gag carrier but substantially lower responses to the inserted antigen. Up until now it has been believed that the maximum size of inserted or C-terminally fused epitopes is at most around 200 amino acids 7. It is also recognized that both the location of the insert and the nature of the insert itself affect the formation of VLPs from these recombinant proteins 7.
Abbreviations used in the specification: aa amino acid
AIDS acquired immunodeficiency syndrome
APCs antigen presenting cells bp base pair
CAT chloramphenicol acetyl transferase
CTL cytotoxic T-lymphocyte
DC dendritic cell
DNA deoxyribonucleic acid
EM electron microscopy g gram
GFP green fluorescent protein
HIV human immunodeficiency virus kDa kilo Dalton ml millilitre myr + N-terminal myristoylation positive myr " N-terminal myristoylation negative
NAb neutralizing antibody ng nanogram
PAGE polyacrylamide gel electrophoresis
PBS phosphate buffered saline
PCR polymerase chain reaction
SIV simian immunodeficiency virus
SDS sodium dodecyl sulphate μg microgram μl microlitre
VLP virus-like particle
WHO World Health Organization
Wt wild type
SUMMARY OF THE INVENTION
According to a first embodiment of the invention, there is provided a method of producing immunogenic chimaeric proteins which self-assemble into virus-like particles, the method including the steps of fusing a first DNA sequence encoding a HIV-1 subtype C protein sequence or portion thereof of greater than 200 amino acids to a second DNA sequence encoding at least p17 and p24 of a Gag protein by a direct in-frame C-terminal fusion, infecting a host cell with a vector containing the fused sequence, and causing expression of the chimaeric protein encoded by the fused sequence.
The chimaeric protein assembles spontaneously at the cell membrane and buds externally to form a virus-like particle (VLP) that resembles an immature HIV virion. These virus-like particles may be recovered for use in a vaccine.
The DNA sequences for both the Gag protein and the HIV protein may be human codon optimised
Apart from including only p17 and p24 (p41), the gag DNA sequence may be the full-length gag sequence, or may be a truncated gag sequence, for example, a p6-truncated gag sequence, such as the nucleotide sequences of any one of SEQ I. D. Nos. 1 to 5 (or the corresponding amino acid sequences of SEQ I. D. Nos. 6 to 9), or a sequence which is at least 80%, 90% or 95% identical thereto.
The first DNA sequence may be a reverse transcriptase sequence, a tat sequence or a nef sequence, or a combination thereof. These sequences may be modified to be non-functional for stability and safety purposes, such as by mutation, shuffling and/or truncation. For example, the first DNA sequence may be the nucleotide sequence of any one of SEQ I. D. Nos. 10, 12, 14, 16, 18, 40 or 42 (or the corresponding amino acid sequences of SEQ I. D. Nos. 11, 13, 15, 17, 41 or 43), or a sequence which is at least 80%, 90% or 95% identical thereto.
The fused sequence may have a nucleotide or amino acid sequence of SEQ I. D. Nos. 20 to 39, or a sequence which is at least 80% identical thereto, or more preferably at least 90% identical thereto, or even more preferably, at least 95% identical thereto.
The host cell may be a human, animal or insect cell, wherein the insect cell may be infected by the baculovirus expression system
The chimaeric protein typically forms budded particles or virus-like particles including up to about 1 000 amino acids, and especially up to about 800 amino acids, of the first protein. These budded or virus-like particles may have a particle size of between about 100nm and about 450nm in diameter.
According to a second embodiment of the invention, there is provided a chimaeric virus-like particle or budded particle produced by the method described above.
According to a third embodiment of the invention, there is provided a vaccine or pharmaceutical composition including a chimaeric virus-like particle or budded particle or mixtures thereof as described above.
The vaccine or pharmaceutical composition may be for the treatment or prophylaxis of HIV or AIDS.
According to a fourth embodiment of the invention, there is provided a method of treating or preventing HIV infection in a mammal, the method including the steps of administering to the mammal a pharmaceutical composition, and in particular a vaccine, including chimaeric budded or virus-like particles or mixtures thereof as described above.
According to a fifth embodiment of the invention, there is provided the use of budded or virus- like particles or mixtures thereof as described above in a method of making a pharmaceutical composition, and in particular a vaccine, for the treatment or prophylaxis of HIV or AIDS.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1: Schematic representation depicting shuffling of tat in pTHgrttnC
FIG. 2: Schematic representation of chimaeric Gag constructs.
Fourteen proteins are shown with the N-terminus on the left - aa, amino acid; RT, Reverse transcriptase; TN, shuffled Tat-Nef, M, methione; G, glycine; A, alanine. (1. Rounded off to nearest kDa.) FIG. 3: Nucleotide and amino acid sequences inserted into constructs
(a) humanised myristoylated Gag HMGagC (Sequence I. D. Nos. 6 and 8); (b) humanised myristoylated truncated Gag THMGagC (Sequence I. D. Nos. 9 and 7); (c) pTHgagC (Sequence LD. No. 1); (d) pTHgrttnC.
FIG. 4: Amino acid sequences of chimaeric full-length Gag constructs
The 5 chimaeric Gag sequences shown are the constructs containing full-length Gag. The sequences of the corresponding constructs containing p6-truncated Gag are identical but without the sequence shown in bold (Sequence I. D. Nos. 8 and 9). Amino acid position numbers are shown on the left and sequence identifiers on the right, (a) HMgag3'RT - humanized myristoylated Gag fused to 3' end of RT gene (Sequence I. D. Nos. 11, 21 and 23); (b) HMgag3TN - Gag fused to 3' end of Tat-Nef polygene fragment (Sequence LD. Nos. 25, 27 and 13); (c) HMgagTN - Gag fused to Tat-Nef polygene fragment (Sequence LD. Nos. 29, 31, 41 and 43); (d) HMgagRT - Gag fused to RT gene (Sequence LD. Nos. 33, 35 and 17); (e) HMgagRTTN - Gag fused to RT-Tat-Nef polygene fragment (Sequence LD. Nos. 37, 39 and 19).
FIG. 5: DNA sequences of chimaeric full-length Gag constructs
The 5 chimaeric gag sequences shown are the constructs encoding full-length Gag. The sequences of the corresponding constructs encoding p6-truncated Gag are identical but without the sequence shown in bold (Sequence LD. Nos. 2 to 5). Nucleotide position numbers are shown on the left, (a) HMgag3'RT - encoding humanized myristoylated Gag fused to 3' end of RT gene (Sequence LD. Nos. 20, 22 and 10); (b) HMgag3TN - encoding Gag fused to 3' end of Tat-Nef polygene fragment (Sequence LD. Nos. 24, 26 and 12); (c) HMgagTN - encoding Gag fused to Tat-Nef polygene fragment (Sequence LD. Nos. 28, 30, 14, 40 and 42); (d) HMgagRT - encoding Gag fused to RT gene (Sequence LD. Nos. 32, 34 and 16); (e) HMgagRTTN - encoding Gag fused to RT-Tat-Nef polygene fragment (Sequence LD. Nos. 36, 38 and 18), sequence identifiers are indicated above the relevant section of the DNA sequence.
FIG. 6: Western blots of control Gag proteins in High Five ™ cell pellets and supernatants
High 5 cells were infected with recombinant baculovirus expressing 4 control Gag proteins. Three days post infection cell pellets were collected and equal amounts of cell lysate (CL) or equal volumes of culture supernatant (SUP) were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432) Lanes: M, Molecular weight marker; 1, HMgagC CL; 2, HMgagC SUP; 3, HΔMgagC CL; 4, HΔMgagC SUP; 5, THMgagC CL; 6, THMgagC SUP; 7, THΔMgagC CL; 8, THΔMgagC SUP; 9, Baculovirus only CL. Arrowheads indicate the full and truncated Gag protein bands. FIG. 7: Western blots of chimaeric Gag proteins in High 5 cell pellets
High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell pellets were collected and equal amounts of cell lysate were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432). (A) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgag3'RT; 3, THMgag3'RT; 4, HMgag3TN; 5, THMgag3TN; 6, Baculovirus; 7 Uninfected. (B) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgagTN; 3, THMgagTN; 4, HMgagRT; 5, THMgagRT; 6, HMgagRTTN; 7, THMgagRTTN; 8, Baculovirus; 9 Uninfected.
FIG. δ: Western blots of chimaeric Gag proteins in High Five ™ cell pellets
High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell pellets were collected and equal amounts of cell lysate were loaded in each lane. Blots were probed with anti-RT polyclonal antiserum (A, ARP428) and anti-nef monoclonal antibody (B, 01-003). (A) Lanes: M, Molecular weight marker; 1, RT control protein; 2, HMgag3'RT; 3, THMgag3'RT; 4, HMgagRT; 5, THMgagRT; 6, HMgagRTTN; 7, THMgagRTTN; 8, HMgagC; 9 THMgagC. Arrowheads indicate recombinant Gag proteins. (B) Lanes: M, Molecular weight marker; 1 , Recombinant Nef control protein; 2, HMgag3TN; 3, THMgag3TN; 4, HMgagTN; 5, THMgagTN; 6, HMgagRTTN; 7, THMgagRTTN; 8, HMgagC; 9 THMgagC
FIG. 9: Western blots of Gag proteins in High 5 cell culture supernatant
High 5 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell supernatants were collected and equal volumes were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432). (A) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgag3'RT; 3, THMgag3'RT; 4, HMgag3TN; 5, THMgag3TN; 6, Baculovirus; 7 Uninfected. (B) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgagTN; 3, THMgagTN; 4, HMgagRT; 5, THMgagRT; 6, HMgagRTTN; 7, THMgagRTTN; 8, Baculovirus; 9 Uninfected. Arrowheads indicate recombinant Gag proteins in (A) and (B).
FIG. 10: Western blots of Gag proteins in Sf21 cell culture supernatant
Sf21 cells were infected with recombinant baculovirus expressing different Gag chimaeric proteins. Three days post infection cell supernatants were collected and equal volumes were loaded in each lane. Blots were probed with anti-p24 polyclonal antiserum (ARP432). (A) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgag3'RT; 3, THMgag3'RT; 4, HMgag3TN; 5, THMgag3TN; 6, Baculovirus; 7 Uninfected. (B) Lanes: M, Molecular weight marker; 1, HIV-1B Gag protein; 2, HMgagTN; 3, THMgagTN; 4, HMgagRT; 5, THMgagRT; 6, HMgagRTTN; 7, THMgagRTTN; 8, Baculovirus; 9 Uninfected. Arrowheads indicate recombinant Gag proteins in (A) and (B).
FIG. 11: VLPs and budded structures produced by chimaeric Gag proteins in Sf21 cells.
(A) HΔMgagC (B) THΔMgagC (C) HMgagC (D) THMgagC (E) HMgag3'RT (F) THMgag3'RT (G) HMgag3TN (H) THMgag3TN (I) HMgagTN (J) THMgagTN (K) HMgagRT (L) THMgagRT (M) HMgagRTTN (N) THMgagRTTN. Bar = 100nm, all photos at same scale.
FIG. 12: Example of VLP band visible by trans-illumination after sucrose gradient sedimentation.
The arrow indicates the VLP band in the 30-70% sucrose gradient visible by trans-illumination, in this example THMgagC VLPs.
FIG. 13: Western blots of chimaeric Gag proteins in Sf9 particle purifications
VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
FIG. 14: Western blots of chimaeric Gag proteins in Sf9 particle purifications
VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
FIG. 15: Western blots of chimaeric Gag proteins in Sf9 particle purifications VLP purifications were run on the same blot and probed with different antibodies to show that the predominant protein contained desired protein components.
FIG. 16: Schematic representation of HIV-1 Gag precursor protein with functional domains N-Terminus to the left.
FIG. 17: Response of mice to a prime with pTHgrttnC and a boost with Gag RT
VLPs
Results show ELISPOT counts of γ-interferon producing peripheral blood mononuclear cells from mice immunized with pTHr.GrttnC DNA and boosted with HMGagRT VLPs. Med = medium only; irrel pep = unrelated peptide; other peptides derived as shown. DETAILED DESCRIPTION OF THE INVENTION
The invention describes the construction of immunogenic chimaeric virus-like particles (VLPs), budded particles or mixtures thereof, based on the human immunodeficiency virus (HIV) Gag protein for vaccine purposes. VLPs are essentially protein-based antigens that structurally resemble the pathogenic virus but are non-infectious and cannot replicate. In this case, the structural protein Gag of HIV (or at least the portion encoding p17 and p24 thereof) forms the basis of the VLP, which produces particles of 100-140nm in diameter. These bud from cells infected with suitable vectors expressing Gag.
To produce chimaeric Gag based VLPs, HIV-derived DNA sequences were fused to the 3' end of the gag gene sequence in order to produce chimaeric proteins and thus VLPs of the recombinant protein. Since chimaeric VLPs contain a greater range of HIV protein sequence, they generally elicit a broader immune response compared with Gag-only VLPs. The chimaeric VLPs produced herein contain significantly larger protein fusions than previously reported, or were thought possible, i.e. VLPs containing fusion proteins having up to 778 C-terminal addition amino acids are described herein, whereas it was previously thought that it was not possible to obtain chimaeric VLPs with fusion proteins of greater than 200 amino acids.
The plasmids pTHgagC 32 and pTHgrrtnC 40 listed in Table 1 contain HIV-1 subtype C DNA sequences obtained from 2 individuals within three months of infection. These isolates (Du151 and Du422) were selected on having closest amino acid similarity to a South African subtype C consensus sequence 32'38. Full length Gag (non-myristylated) is encoded by pTHgagC, while pTHgrttnC encodes a polyprotein of p6-truncated Gag (non-myristoylated), Reverse transcriptase (RT), shuffled Tat and Nef. As components of DNA vaccines for expression of these proteins in vivo, all genes were human codon optimized (gag by Operon Technologies Inc., USA and RT, tat and nef by GeneArt, Germany) and inhibitory sequence sites were removed. In addition, the polyprotein components were modified, at the genetic level, to be non-functional for stability and safety considerations. Briefly, Gag myristylation site was removed by mutating MGA to MAA (aa number 2) by site-directed mutagenesis; the active site of RT was inactivated by mutation (YMDDL → YMAAL); Tat was inactivated through shuffling of the three gene regions known to be important to function (while maintaining all potential epitopes) (Fig. 1); and Nef was inactivated by removal of 30 bp at the 5'-end coding for 10 N- terminal amino acids (known to be essential for functionality). The proteins were also shown to be non-functional experimentally: infected HEK 293 cell lysates contained full length GrttnC polyprotein (approximately 150 kDa) but no RT activity. Expression of a shuffled Tat-GFP was visualized in HLCD4-CAT indicator cells but no CAT activity was detectable - which was demonstrated with wild-type (functional) Tat-GFP. lmmunofluorescent labeling of infected cells with anti-Nef antibody showed cytoplasmic localization, whereas active Nef is localized to the cell membrane. Preliminary immunogenicity studies have shown that vaccination of BALB/c mice with pTHgrttnC lead to high induction levels of cytotoxic T lymphocytes (CTLs) against multiple epitopes, and strong IFN-γ responses to RT were stimulated 40. Therefore, these components were chosen as the fusion sequences for the chimaeric VLPs, with the added advantage of providing a protein analogue to the DNA vaccine for possible use in a heterologous prime-boost.
The invention is further described by the following examples. Such examples, however, are not to be construed as limiting in any way either the spirit or scope of the invention.
Examples:
To test whether it is possible to generate chimaeric VLPs incorporating large inserts, the applicants made C-terminal fusions to full-length Gag and a p6-truncated Gag. It was reasoned that a truncated Gag still capable of forming VLPs might offer more potential for larger fusions. Rather than disrupt the Gag protein itself by inserting protein sequences internally, all fusions were made on the C-terminus of both Gag versions. The 10 Gag fusion constructs, in addition to the 4 Gag positive controls, are shown in Fig. 2. Corresponding amino acid sequences are shown in Figs. 3 and 4. Corresponding DNA sequences are shown in Fig. 5. For each control and chimaeric protein, the encoding DNA sequence was assembled and transposed into baculovirus under the polyhedron promoter using the Bac-to-Bac® Baculovirus Expression System (Invitrogen™). The resulting recombinant baculovirus was used to infect Sf9, Sf21 and High Five™ cells for expression of the protein in either monolayer or suspension culture. Electron microscopy together with Western blotting of cell lysates, culture supernatants and particle preparations was used to ascertain that the 10 Gag fusion constructs formed VLPs.
Firstly, it was shown that the correct chimaeric proteins and controls were being expressed. Both myr+ (HMgagC and THMgagC) and myr" (HΔMgagC and THΔMgagC) controls expressed protein of the expected size in cell lysates that reacted strongly with anti-p24 antibody (Fig. 6). Only protein from the myr+ controls should bud into the media as VLPs, and indeed the expected protein was only present in significant quantities in the corresponding supernatants. (Fig. 6 lanes 2 & 4). It was also shown by electron microscopy (EM) that neither myr " Gag construct forms budding structures (Fig. 11 A & B).
The 10 chimaeric Gag constructs all produced protein of the expected size in the cell lysates (Fig. 7A & B). Fig 8A confirms that the RT fusions do indeed produce RT containing protein, while Fig. 8B shows likewise for Nef. In the -TN and -RTTN fusions, Nef is C-terminal to the shuffled Tat, and so the presence of shuffled Tat can be inferred from the presence of the Nef. Three days post-infection, 8 of the 10 chimaeric Gag proteins were visible in High Five™ cell supernatant by western blot (Fig. 9A & B). Although the multiplicity of infection (m.o.i.) has not yet been standardized, all other conditions were kept constant between infections with different constructs. The pattern in overall band intensity (and relative to p41 intensity for each lane on the blot) for each chimaeric protein seems to indicate that the larger Gag fusions result in lower protein levels in the supernatant. A similar trend was observed with infection of Sf21 cells (Fig. 10), but three days post-infection the -RTTN constructs were visible in the supernatant. Irrespective of the dynamics of cellular expression level and extra-cellular movement of each construct, all 10 Gag fusions are present in the supernatant. Furthermore, the -3'RT, -3TN and -TN fusions result in distinct VLPs as visible by EM (Fig. 11 E-J) and the -RT and -RTTN fusions produce budded structures which appear to be not as defined in structure as classic VLPs. Taken together, the data from the western blots and EM shows that expression of each construct leads to that protein being present in culture supernatant and that VLPs or budded particles are produced. Since there are some specific breakdown products visible in the supernatant for some of the constructs (Fig. 9A & B), particularly those containing shuffled Tat and Nef regions, gradient preparations were analysed to ascertain if the predominant protein is indeed the full-length one. Particulate matter is visible as a band in the sucrose gradient after ultracentrifugation (Fig. 12). Although these particle purifications are fairly crude, they clearly exclude free soluble protein such as p41 and BSA from the supernatant. Three examples of these blots, for HMgagC fusions, are shown in Figs. 13-15. Similar results were obtained for THMgagC fusions. Certainly for the smaller fusions (-3'RT, -3TN and TN) the full length protein is the only distinct band present after VLP purification (Fig. 13, 14). The RT fusions gave full length protein as the major band, while -RTTN fusions had several prominent bands with the full length protein having the greatest band intensity (Fig. 15). Certainly for the -RTTN fusions it seems some of the specific cleavage products form VLPs - which could account for the substantial heterogeneity in particle size observed in EM (Fig. 11 panel M & N). However, the fact that the full-length -RTTN fusion is present after VLP purification implies that this construct can form budded particles. Of the 10 fusion constructs, it was consistently found that the HMgagC fusion gave a greater particle yield than the THMgagC fusions, although the difference has not been accurately quantified as yet.
Fig. 17 shows good preliminary evidence that chimaeric Gag-based VLPs containing RT sequences can be used to boost appropriate cellular immune responses - by both CD4+ and CD8+ T cells - in mice primed with a Gag-RT-Tat-Nef -encoding DNA vaccine.
The evidence presented here demonstrates that the applicants have constructed Gag-based particles with much larger inserts than previously reported or thought possible. Furthermore, the antigenic nature of the fusions suggests that these chimaeric VLPs may be superior vaccine candidates to the Gag-based VLPs that have previously been reported. Materials and methods
Plasmid construction
26 All DNA manipulations were carried out according to standard procedures a. Cloning into pGEM® - T easy was done according to manufacturers instructions.
Table 1: Raw materials: plasmids and cloning vectors
Plasmid Sequence of interest / Reason for use Source
pTHgagC gag gene encoding full length, humanized, non-N- J. van myristoylated HIV1-C Gag (van Harmelen et al., 2003) Harmelen1
pTHgrttnC polygene encoding p6-truncated Gag, Reverse J. van transcriptase (RT), shuffled Tat and inactivated Nef (TN) Harmelen1
(Burgers ef a/., 2006)
pGEM® - T easy Used for cloning of PCR generated fragments Promega2
pFastBac™Dual Used for cloning protein sequences to be transposed into Invitrogen3 baculovirus 1. Institute for Infectious Diseases and Molecular Medicine, Division of Medical Virology, University of Cape
Town, Observatory, Cape Town 7925, South Africa.
2. Promega Corporation, Madison, USA.
3. Invitrogen Ltd, Paisley, UK.
Construction of sub-cloning plasmids
Note:
Introduced restriction enzyme sites and stop codons are bold and underlined respectively.
All new plasmids were confirmed by appropriate restriction enzyme digests.
pGEM-5'HMgag (3611 bp)
The 5' end of the gag gene in pTHgagC (van Harmelen et al., 2003) was PCR amplified with primers HMgagFI (5'-CTT GCC ACC ATG GGT GCT CGC GCA TC-3') and HMgagRI (5'- GGT GTC CTC CCA CTG TTC AGC ATA GTG TTC-3'); where HMgagFI restores the myristoylation signal (ala2 → gly2) at the N-terminus of the protein. This initial PCR product was used as template in a second PCR reaction with HMgagF2 (5'-ATT AGG ATC CAA GCT TGC CAC CAT GGG TGC-3') and HMgagRI where a BamH\ site is introduced upstream of the start codon. This second PCR product was cloned into pGEM® - T easy.
pGEM-3'HgagNS (3984bp)
The 3' end of the gag gene in pTHgagC was PCR amplified with primers HMgagF3 (5'-GCG AAG GCG CCA CTC CTC-3') and HMgagR2 (5'-CTT GAA TTC TTG GCT GAG GGG GTC GCT AC-3'), where HMgagR2 eliminates the stop codon and introduces an EcoRI site. This PCR product was cloned into pGEM® - T easy.
pGEM-3'THgag (3837bp) The 3' end of the gag gene in pTHgagC was PCR amplified with primers HMgagF3 (5'-GCG
AAG GCG CCA CTC CTC-3') and HMgagR3 (5'- AGC GAA TTC TTA GCC AGG GCG GCC
CTT ATG-3'), where HMgagR3 inserts a stop codon (TAA) and introduces an EcoRI site upstream of the p6 region. This PCR product, which is effectively a p6 truncated gag gene, was cloned into pGEM® - T easy.
pFBD-5'HMgag (5817bp) pGEM-5'HMgag was digested with BamHl and EcoRI and the resulting 601 bp fragment was cloned into pFastBac™Dual digested with the same enzymes.
pFBD- THMgagNS (6560bp) pTHRepgrttnC (Burgers et a/., 2006) was digested with Naή and EcoRI and the resulting 803bp fragment was cloned into pFBD-5'HMgag digested with the same enzymes.
pFBD- HMgagNS (671 Obp) pGEM-3'HgagNS was digested with Naή and EcoRI and the resulting 953bp fragment was cloned into pFBD-5'HMgag digested with the same enzymes.
Construction of plasmids for generation of recombinant baculovirus
Note:
All pFastBac™Dual constructs contain HIV1-C protein sequences cloned into the multiple cloning site (MCS) of the polyhedron promoter present in this vector. All protein sequences have an in-frame stop codon at the 3'-end of the sequence.
pFBD-HMgagC (6713bp) pTHgagC was digested with Naή and EcoRI and the resulting 956bp fragment was cloned into pFBD-5'HMgag digested with the same enzymes.
pFBD-THMgagC (6563bp) pGEM-3'THgag was digested with Naή and EcoRI and the resulting 806bp fragment was cloned into pFBD-5'HMgag digested with the same enzymes.
pFBD-HΔMgagC (6707bp) pFBD-HMgagC and pTHgagC were digested with Naή and Hind\\\, yielding 1027bp and 535bp fragments respectively. Both these fragments were" sequentially cloned into pFBD-HMgagC digested with Hinά\\\ only.
pFBD-THΔMgagC (6557bp) pFBD-THMgagC and pTHgagC were digested with Naή and Hind\\\, yielding 877bp and 535bp fragments respectively. Both these fragments were sequentially cloned into pFBD-THMgagC digested with Hind\\\ only.
pFBD-HMgag3'RT (6997bp) pTHRepgrttnC was digested with Alw44\ and blunted with mung bean nuclease. Further digestion with Not] gave a 314bp fragment that was cloned into pFBD-HMgagNS digested with Sful and Nott .
pFBD-THMgag3'RT (6847bp) pTHRepgrttnC was digested with Alw44\ and blunted with mung bean nuclease. Further digestion with Not\ gave a 314bp fragment that was cloned into pFBD-THMgagNS digested with Sful and Λ/ofl .
pFBD-HMgag3TN (7176bp) pTHRepgrttnC was digested with Naή and blunted with Klenow enzyme. Further digestion with Xba\ gave a 506bp fragment that was cloned into pFBD-HMgagNS digested with Sful and Xba\ .
pFBD-THMgag3'TN (7026bp) pTHRepgrttnC was digested with Naή and blunted with Klenow enzyme. Further digestion with Xba\ gave a 506bp fragment that was cloned into pFBD-THMgagNS digested with Sful and Xba\ .
pFBD-HMgagTN (7635bp) pTHRepgrttnC was digested with Λ/col and blunted with Klenow enzyme. Further digestion with Xba\ gave a 965bp fragment that was cloned into pFBD-HMgagNS digested with SM and Xba\ .
pFBD-THMgagTN (7485bp) pTHRepgrttnC was digested with Λ/col and blunted with Klenow enzyme. Further digestion with
Xba\ gave a 965bp fragment that was cloned into pFBD-THMgagNS digested with Sful and Xba\ .
pFBD-HMgagRT (8035bp) pTHRepgrttnC was digested with EcoRI and Nott and the resulting 1361bp fragment was cloned into pFBD-HMgagNS digested with the same enzymes. In this case the stop codon (TAG) is 18bp downstream of RT gene.
pFBD-THMgagRT (7885bp) pTHRepgrttnC was digested with EcoRI and Nott and the resulting 1361bp fragment was cloned into pFBD-THMgagNS digested with the same enzymes. In this case the stop codon (TAG) is 18bp downstream of RT gene.
pFBD-HMgagRTTN (9047bp) pTHRepgrttnC was digested with EcoRI and the resulting 2337bp fragment was cloned into pFBD-HMgagNS digested with the same enzyme.
pFBD-THMgagRTTN (8897bp) pTHRepgrttnC was digested with EcoRI and the resulting 2337bp fragment was cloned into pFBD-THMgagNS digested with the same enzyme.
Sequencing
• pFBD-HΔMgagC and pFBD-THΔMgagC were sequenced with the primer FBDS1 (5'- TAA AGG TCC GTA TAC TCC GG-3') to confirm the gag sequence does not contain the myristoylation signal.
• All pFastBac™Dual constructs where blunting reactions were included in construction were sequenced with the primer HMgagSI (5'-GTG CTT CAA TTG TGG CAA GGA GGG-3') to confirm the sequence near the blunting site. • All pGEM® - T easy constructs were sequenced in both directions using an M13 primer set.
Insect cell culture
Sf21 and Sf9 insect cells (derived from the fall army worm, Spodoptera frugiperda) and High Five™ cells (derived from the cabbage looper, Tήchoplusia ni) were all obtained from Invitrogen™ and cell lines were maintained as recommended. For infection with recombinant baculovirus in monolayer, Sf21 cells were grown at 270C in TC-100 Insect medium (Sigma) supplemented with: 10% (v/v) foetal bovine serum (FBS), 50 μg/ml neomycin, 69.2 μg/ml Penicillin G and 100 μg/ml Streptomycin. Sf9 cells were grown under the same conditions with the addition of 0.1% Pluronic® F-68 (Sigma): a surfactant to decrease membrane shearing in suspension culture. Glassware was prepared by coating with Repelcote (VWR International Ltd, Poole, UK), washing with detergent, autoclaving and baking at 2000C for 2 hr. Cultures were incubated in a rotary shaker at 120 RPM. For expression of proteins in serum-free media, High Five™ cells were grown in Express Five® media (Gibco) with 10 μg/ml Gentamycin and 18mM L-glutamine.
Generation of recombinant baculovirus.
Recombinant FastBac™Dual constructs were individually transformed into competent Escherichia coli DHIOBac cells (Invitrogen™) by standard methods 26 to generate corresponding recombinant bacmid DNA using the Bac-to-Bac® Baculovirus Expression System
(Invitrogen™). This bacmid DNA was extracted using a modified alkaline lysis method. Sf21 cells (1 x 106) were seeded in sterile 35mm2 tissue culture wells and transfected with recombinant bacmid DNA and Cellfectin™ (Invitrogen™) and recombinant baculovirus (Autographa californica nuclear polyhedrosis virus) was amplified by repeated passages.
lmmunoblotting
Protein samples were diluted in 5x loading buffer 14, heated at 9O0C for 5 min and separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis 26 (SDS-PAGE). For immunoblotting, proteins were transferred to nitrocellulose membranes (NitroBind, Osmonics Inc.) using a Trans Blot® semi-dry transfer cell (Bio-Rad). Membranes were then soaked in blocking buffer [3% (w/v) bovine serum albumen (BSA) and 0.1% (v/v) Tween 20 in PBS] overnight and probed with appropriate primary antibodies (Table 1) for 4 hr. Following 3 sets of washes for 10 min each, blots were reacted with appropriate secondary antibodies (Table 1.) for 2 hr. After a second set of washes blots were developed with Nitro blue tetrazolium chloride/5- Bromo-4-chloro-3-indolyl phosphate (NBT/BCIP, Roche, Germany). The pre-stained molecular weight marker (PageRuler™) was obtained from Fermentas (Maryland, USA).
Table 2: Positive control proteins used in Western blotting
Control Details Size (kDa) Reference Source
Gag HIV-1 BH10 Pr55 Gag 55 303058 Commercial1
RT HIV-1HχB2 Reverse Transcriptase dimer (E. coli) 51 , 66 2897 S. Le Grice2
Nef Recombinant HIV-1 Nef (E.coli) 27 EVA650 V. Erfle3
1. Quality Biological, Inc, Gaithersburg, USA.
2. NIH AIDS Research & Reference Reagent Programme, McKesson BioServices Corporation, Germantown, USA. 3. National Institute for Biological Standards and Control (NIBSC), Centralised Facility for AIDS Reagents, Medical Research Council (MRC), United Kingdom (UK).
Table 3: Primary antibodies used in Western blotting
Antigen Host Dilution Details Reference Source
Antiserum to Recombinant HIV-1 p24 p24 Rabbit 1:2000 ARP432 G. Reid1 GST (E coli).
Gag Mouse 1:500 Monoclonal antibody to HIV-1 p55/p24 ARP319 L. Maaheim1
Antiserum to Recombinant HIV-1 LAV
RT Sheep 1:2000 ARP428 M. Page1 Reverse Transcriptase
Monoclonal antibody (IgGI) to HIV-1
Nef Mouse 1:1000 01-003 FIT Biotech2 Nef. Mapped to VEEANK
1. National Institute for Biological Standards and Control (NIBSC), Centralised Facility for AIDS Reagents, Medical Research Council (MRC), United Kingdom (UK).
2. FIT Biotech Oyj PIc, Tampere Finland.
Table 4: Secondary antibodies used in Western blotting
Antigen Host Dilution Details Source
Rabbit
Goat 1:5000 Affinity purified alkaline phosphatase conjugate Sigma1 IgG
Sheep
Goat 1:5000 Affinity purified alkaline phosphatase conjugate Sigma1 IgG
Mouse
Goat 1 :5000 Affinity purified alkaline phosphatase conjugate Sigma1 IgG
1. Sigma, Atlasville, South Africa
Electron microscopy
Sf21 cells (1 x 106) were seeded into 35mm2 tissue culture wells and infected with recombinant baculovirus. Cells were fixed 72hrs post-infection with 2.5% glutaraldehyde in PBS overnight and resuspended in low melting point agarose. Samples were post-fixed with 1% osmium tetroxide in PBS, dehydrated through an ethanol series and embedded in Spurrs resin. Ultrathin sections, cut with a Leica Reichert Ultracuts microtome, were mounted on copper grids and stained with 2% uranyl acetate for 10 min. After 5 washes in ultrapure water, samples were stained with Reynolds lead citrate for 10 min. Grids were then rinsed in a stream of ultrapure water, dried, and samples were visualized with a LEO 912 transmission electron microscope.
VLP purification
Supernatant from 60ml Sf9 suspension culture, infected with 600μl of amplified viral stock, was centrifuged at 30 000 RPM for 3 hr in 70ml polycarbonate tubes in a Beckman L7-55 ultracentrifuge. The pellet containing VLPs was resuspended in PBS pH 7.4 and overlayed on a 30-70% sucrose gradient and centrifuged at 26 000 RPM for 90 min. The VLP band visible by trans-illumination was extracted by syringe through a side puncture and resuspended in 4OmIs PBS. The VLPs were pelleted by further centrifugation at 26 000 RPM for 1 hr and resuspended in a final volume of 500μl PBS with Complete protease inhibitor cocktail (Roche, Germany).
Cellular immune responses
Two groups of mice were primed with pTHGrttnC (100μg, im). Twenty eight days later one group was given an intraperitoneal inoculation of 20ng GagRT VLPs in a volume of 150 μl PBS. Mice were sacrificed on day 40 and splenocytes prepared. Immune responses to CD8 and CD4 epitopes in Gag and RT were investigated in a mouse IFN-γ ELISPOT assay. A group of mice given just 20ng of GagRT VLPs did not show an immune response to Gag and RT (Fig. 17).
While the invention has been described in detail with respect to specific embodiments thereof, it will be appreciated by those skilled in the art that various alterations, modifications and other changes may be made to the invention without departing from the spirit and scope of the present invention. It is therefore intended that the claims cover or encompass all such modifications, alterations and/or changes.
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Claims

CLAIMS:
1. A method of producing immunogenic chimaeric proteins which self-assemble into virus- like particles, the method including the steps of fusing a first DNA sequence encoding a HIV-1 subtype C protein or portion thereof of greater than 200 amino acids to a second DNA sequence encoding at least p17 and p24 of a Gag protein by a direct in-frame C- terminal fusion, infecting a host cell with a vector containing the fused sequence, and causing expression of the chimaeric protein encoded by the fused sequence.
2. A method according to claim 1 , wherein the first and/or second DNA sequence are/is human codon optimized.
3. A method according to either of claims 1 or 2, wherein the second DNA sequence is a full-length gag sequence.
4. A method according to either of claims 1 or 2, wherein the second DNA sequence is a truncated gag sequence.
5. A method according to claim 4, wherein the second DNA sequence is a p6-truncated gag sequence.
6. A method according to any one of the previous claims, wherein the second DNA sequence is selected from the group consisting of SEQ LD. Nos. 1 to 5, or sequences which are at least 80% identical thereto.
7. A method according to any one of the previous claims, wherein the second DNA sequence is at least 90% identical to any one of SEQ I. D. Nos. 1 to 5.
8. A method according to any one of the previous claims, wherein the second DNA sequence is at least 95% identical to any one of SEQ I. D. Nos. 1 to 5.
9. A method according to any one of the preceding claims, wherein the first DNA sequence is modified to be non-functional for stability and safety purposes.
10. A method according to any one of the preceding claims, wherein the first DNA sequence is a reverse transcriptase sequence.
11. A method according to claim 10, wherein the reverse transcriptase sequence is that of SEQ I. D. No. 10, or a sequence which is at least 80% identical thereto.
12. A method according to claim 10, wherein the second DNA sequence is at least 90% identical to SEQ I.D. No. 10.
13. A method according to claim 10, wherein the second DNA sequence is at least 95% identical to SEQ I.D. No. 10.
14. A method according to any one of claims 1 to 9, wherein the first DNA sequence is a tat sequence.
15. A method according to claim 14, wherein the tat sequence is that of SEQ I.D. No. 40, or a sequence which is at least 80% identical thereto.
16. A method according to claim 14, wherein the second DNA sequence is at least 90% identical to SEQ I.D. No. 40.
17. A method according to claim 14, wherein the second DNA sequence is at least 95% identical to SEQ I.D. No. 40.
18. A method according to any one of claims 1 to 9, wherein the first DNA sequence is a nef sequence.
19. A method according to claim 18, wherein the nef sequence is that of SEQ I.D. No. 42, or a sequence which is at least 80% identical thereto.
20. A method according to claim 18, wherein the second DNA sequence is at least 90% identical to SEQ I.D. No. 42.
21. A method according to claim 18, wherein the second DNA sequence is at least 95% identical to SEQ I.D. No. 42.
22. A method according to any one of claims 1 to 9, wherein the first DNA sequence is a combination of tat and nef sequences, or portions thereof.
23. A method according to claim 22, wherein the first DNA sequence has a nucleotide sequence of SEQ ID No. 14, or a sequence which is least 80% identical thereto.
24. A method according to claim 22, wherein the second DNA sequence is at least 90% identical to SEQ I.D. No. 42.
25. A method according to claim 22, wherein the second DNA sequence is at least 95% identical to SEQ I. D. No. 42.
26. A method according to any one of claims 1 to 9, wherein the first DNA sequence is a combination of reverse transcriptase, tat and nef sequences, or portions thereof.
27. A method according to claim 26, wherein the first DNA sequence has a nucleotide sequence of SEQ ID No. 18, or a sequence which is at least 80% identical thereto.
28. A method according to claim 26, wherein the second DNA sequence is at least 90% identical to SEQ I.D. No. 18.
29. A method according to claim 26, wherein the second DNA sequence is at least 95% identical to SEQ I.D. No. 18.
30. A method according to claims 1 to 9, wherein the fused first and second DNA sequence has a nucleotide sequence selected from any of SEQ ID Nos. 20, 22, 24, 26, 28, 30, 32, 34, 36 and 38, or a sequence which is at least 80% identical thereto.
31. A method according to claim 30, wherein the fused first and second DNA sequence is at least 90% identical to any one of SEQ I.D. Nos. 20, 22, 24, 26, 28, 30, 32, 34, 36 and 38.
32. A method according to claim 30, wherein the DNA sequence is at least 95% identical to any one of SEQ I.D. Nos. 20, 22, 24, 26, 28, 30, 32, 34, 36 and 38.
33. A method according to any one of the preceding claims, wherein the host cell is a human, animal, plant or insect cell.
34. A method according to any one of the preceding claims, wherein from greater than 200 to about 1 000 amino acids of each virus-like particle are from the first DNA sequence.
35. A method according to any one of the preceding claims, wherein from greater than 200 to about 800 amino acids of each virus-like particle are from the first DNA sequence.
36. A method according to any one of the preceding claims, wherein the virus-like particles have a particle size of between about 100 and about 450nm in diameter.
37. An immunogenic chimaeric virus-like particle including a first HIV protein or portion thereof of greater than 200 amino acids fused by an in-frame C-terminal fusion to a second HIV protein containing at least p17 and p24 of a Gag protein.
38. A chimaeric virus-like particle according to claim 37, wherein the first protein includes from greater than 200 amino acids to about 1 000 amino acids fused to the second protein or portion thereof.
39. A chimaeric virus-like particle according to either of claims 37 or 38, wherein the first protein includes from greater than 200 amino acids to about 800 amino acids fused to the second protein or portion thereof.
40. A chimaeric virus-like particle according to any one of claims 37 to 39, wherein the second protein is a full-length Gag protein.
41. A chimaeric virus-like particle according to any one of claims 37 to 39, wherein the second protein is a truncated Gag protein.
42. A chimaeric virus-like particle according to claim 41 , wherein the truncated Gag protein is a p6-truncated Gag protein.
43. A chimaeric virus-like particle according to any one of claims 37 to 42, wherein the second protein has an amino acid sequence selected from any one of SEQ ID Nos. 6 to 9, or a sequence which is at least 80% identical thereto.
44. A chimaeric virus-like particle according to claim 43, wherein the second amino acid sequence is at least 90% identical to any one of SEQ I. D. Nos. 6 to 9.
45. A chimaeric virus-like particle according to claim 43, wherein the second amino acid sequence is at least 95% identical to any one of SEQ I. D. Nos. 6 to 9.
46. A chimaeric virus-like particle according to any one of claims 37 to 45, wherein the first protein has been modified so that it is non-functional for stability and safety purposes.
47. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the first protein is a Reverse Transcriptase protein.
48. A chimaeric virus-like particle according to claim 47, wherein the Reverse Transcriptase protein has an amino acid sequence of SEQ I. D. No. 11, or a sequence which is at least 80% identical thereto.
49. A chimaeric virus-like particle according to claim 47, wherein the Reverse Transcriptase amino acid sequence is at least 90% identical to SEQ I. D. No. 11.
50. A chimaeric virus-like particle according to claim 47, wherein the Reverse Transcriptase amino acid sequence is at least 95% identical to SEQ I. D. No. 11.
51. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the first protein is a Tat protein.
52. A chimaeric virus-like particle according to claim 51 , wherein the Tat protein has an amino acid sequence of SEQ I. D. No. 41, or a sequence which is at least 80% identical thereto.
53. A chimaeric virus-like particle according to claim 51 , wherein the Tat amino acid sequence is at least 90% identical to SEQ I. D. No. 41.
54. A chimaeric virus-like particle according to claim 51 , wherein the Tat amino acid sequence is at least 95% identical to SEQ LD. No. 41.
55. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the first protein is a Nef protein.
56. A chimaeric virus-like particle according to claim 55, wherein the Nef protein has an amino acid sequence of SEQ I. D. No. 43, or a sequence which is at least 80% identical thereto.
57. A chimaeric virus-like particle according to claim 55, wherein the Net amino acid sequence is at least 90% identical to SEQ I. D. No. 43.
58. A chimaeric virus-like particle according to claim 55, wherein the Net amino acid sequence is at least 95% identical to SEQ LD. No. 43.
59. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the first protein is a combination of Tat and Nef protein sequences.
60. A chimaeric virus-like particle according to claim 59, wherein the first protein has an amino acid sequence of SEQ ID Nos. 13 or 15, or a sequence which is at least 80% identical thereto.
61. A chimaeric virus-like particle according to claim 59, wherein the Tat-Nef amino acid sequence is at least 90% identical to SEQ I. D. No. 3 or 15.
62. A chimaeric virus-like particle according to claim 59, wherein the Tat-Nef amino acid sequence is at least 95% identical to SEQ I. D. Nos. 13 or 15.
63. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the first protein is a combination of Reverse Transcriptase, Tat and Nef protein sequences.
64. A chimaeric virus-like particle according to claim 63, wherein the first protein has an amino acid sequence of SEQ ID No. 19, or a sequence which is at least 80% identical thereto.
65. A chimaeric virus-like particle according to claim 63, wherein the Reverse Transcriptase, Tat and Nef amino acid sequence is at least 90% identical to SEQ I. D. No. 19.
66. A chimaeric virus-like particle according to claim 63, wherein the Reverse Transcriptase, Tat and Nef amino acid sequence is at least 95% identical to SEQ I. D. No. 19.
67. A chimaeric virus-like particle according to any one of claims 37 to 46, wherein the fused sequence of the first and second proteins is selected from any one of SEQ I. D. Nos. 21 , 23, 25, 27, 29, 31, 33, 35, 37 and 39, or a sequence which is at least 80% identical thereto.
68. A chimaeric virus-like particle according to claim 67, wherein the fused amino acid sequence is at least 90% identical to any one of SEQ I. D. Nos. 21, 23, 25, 27, 29, 31 , 33, 35, 37 and 39.
69. A chimaeric virus-like particle according to claim 67, wherein the fused amino acid sequence is at least 95% identical to any one of SEQ I. D. Nos. 21, 23, 25, 27, 29, 31 , 33, 35, 37 and 39.
70. A chimaeric virus-like particle according to any one of claims 37 to 69, which has a particle size of between about 100 and about 450nm in diameter.
71. The use of a chimaeric virus-like particle of any one of claims 37 to 70 in a method of making a pharmaceutical composition for the treatment or prophylaxis of HIV or AIDS.
72. The use according to claim 71, wherein the pharmaceutical composition is a vaccine.
73. A pharmaceutical composition for the treatment or prophylaxis of HIV or AIDS, which includes a chimaeric virus-like particle of any one of claims 37 to 70.
74. A pharmaceutical composition according to claim 73, which is a vaccine.
75. A method of treating or preventing HIV infection or AIDS in a human, the method including the step of administering to the mammal a pharmaceutical composition including chimaeric virus-like particles of any one of claims 37 to 70.
76. A method according to claim 75, wherein the pharmaceutical composition is a vaccine.
PCT/IB2006/003155 2005-11-08 2006-11-08 Chimaeric hiv-1 subtype c gag-virus-like particles WO2007054792A1 (en)

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US10273285B2 (en) 2014-06-18 2019-04-30 Morphosys Ag Fusion proteins and uses thereof

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