WO2006118955A2 - Process for preparing 3,3-disubstituted oxindoles and thio-oxindoles - Google Patents

Process for preparing 3,3-disubstituted oxindoles and thio-oxindoles Download PDF

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WO2006118955A2
WO2006118955A2 PCT/US2006/016051 US2006016051W WO2006118955A2 WO 2006118955 A2 WO2006118955 A2 WO 2006118955A2 US 2006016051 W US2006016051 W US 2006016051W WO 2006118955 A2 WO2006118955 A2 WO 2006118955A2
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substituted
alkyl
group
aryl
alkoxy
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WO2006118955A3 (en
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Bogdan Kazimierz Wilk
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Wyeth
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Priority to JP2008509126A priority patent/JP2008540337A/en
Priority to EP06751659A priority patent/EP1877377A2/en
Priority to MX2007013450A priority patent/MX2007013450A/en
Priority to BRPI0608221-1A priority patent/BRPI0608221A2/en
Publication of WO2006118955A2 publication Critical patent/WO2006118955A2/en
Publication of WO2006118955A3 publication Critical patent/WO2006118955A3/en

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    • C07C233/02Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having nitrogen atoms of carboxamide groups bound to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
    • C07C233/11Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having nitrogen atoms of carboxamide groups bound to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals with carbon atoms of carboxamide groups bound to carbon atoms of an unsaturated carbon skeleton containing six-membered aromatic rings
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    • C07D213/02Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
    • C07D213/04Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
    • C07D213/60Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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    • C07D241/40Benzopyrazines
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    • C07D333/52Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes
    • C07D333/62Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to carbon atoms of the hetero ring
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    • C07D333/52Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes
    • C07D333/62Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to carbon atoms of the hetero ring
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    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
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Definitions

  • the present invention relates to methods for preparing oxindole and thio- oxindole compounds, particularly 5-pyrrole-3,3-oxindoles, which compounds are useful as precursors to various pharmaceutical compounds.
  • oxindole backbone and particularly a 3,3-disubstituted oxindole backbone.
  • oxindole backbone Of particular interest is 5-(7- fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2- carbonitrile, which contains a 3,3-disubstituted oxindole backbone.
  • oxindole compounds and, desirably, 3,3- disubstituted oxindole compounds are provided.
  • methods for preparing 5-(7-fluoro-3,3-dimethyl-2-oxo- 2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile are provided.
  • methods for preparing thio-oxindole compounds and, desirably, 3,3-disubstituted thio-oxindole compounds are provided.
  • methods for preparing iminobenzo[b]thiophene compounds are provided.
  • a novel route to oxindole compounds and particularly 3,3-oxindole compounds is provided.
  • a shorter route to oxindole compounds is W
  • the process includes converting a fluoroarene to a secondary nitrile substituted arene, converting the nitrile substituent to an amide, and cyclizing the amide to the oxindole compound.
  • an oxindole prepared in the present method has the following structure:
  • R 1 , R 2 , R 3 , and R 4 are, independently, selected from among H, halogen, CN, C 1 to C 6 alkyl, substituted C 1 to C 6 alkyl, C 2 to C 6 alkenyl, substituted C 2 to C 6 alkenyl, C 2 to C 6 alkynyl, substituted C 2 to C 6 alkynyl, C 3 to C 8 cycloalkyl, substituted C 3 to C 8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N 2 + , OSO 2 CF 3 , CF 3 , NO 2 , SR 5 , OR 5 , N(R 5 ) 2 , COOR 5 , CON(R 5 ) 2 , and SO 2 N(R 5 ) 2 ; or R 1 and R 2 ; R 2 and R 3 ; R 3 and R 4 ; R 1 , R 2 , and R 3 ; or R 2 , R 3 ; or
  • R 6 and R 7 are, independently, selected from among C 1 to C 6 alkyl, substituted C 1 to C 6 alkyl, C 3 to C 14 cycloalkyl, substituted C 3 to C 14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C 2 to C 6 alkenyl, substituted C 2 to C 6 alkenyl, C 2 to C 6 alkynyl, substituted C 2 to C 6 alkynyl, N(R 5 ) 2 , SR 5 , and OR 5 ; or R 6 and R 7 are fused to form (iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or (iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from among O, S, and NR 11 ; R 8 is selected from among H, C 1 to C 6 alkyl
  • R 8 is fused with R 4 to form (v) a 5 to 8 membered saturated or unsaturated carbon-containing ring; or (vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from among O, S, and NR 11 ; wherein any of (i)-(vi) are optionally substituted by C 1 to C 6 alkyl, substituted C 1 to C 6 alkyl, halogen, C 1 to C 6 alkoxy, substituted Ci to C 6 alkoxy, orN(R 5 ) 2 ; R 11 is absent, H, Ci to C 6 alkyl, substituted Ci to C 6 alkyl, aryl, or substituted aryl; A, D, E, and G are, independently, selected from among C and N, wherein if any one of A, D, E, or G are N, the corresponding R 1 -R 4 is optional
  • G is N.
  • E and G are N.
  • D and G are N.
  • a and G are N.
  • R 8 is H.
  • R 8 is cyclohexane.
  • R 6 and R 7 are fused to form an adamantane ring.
  • oxindoles of the following structure are prepared, where R 1 -R 4 and R 6 -R 8 are defined above:
  • This oxindole compound is prepared using the following intermediates.
  • alkyl is used herein to refer to both straight- and branched-chain saturated aliphatic hydrocarbon groups having 1 to about 10 carbon atoms, desirably 1 to about 8 carbon atoms, and more desirably 1 to about 6 carbon atoms.
  • alkenyl is used herein to refer to both straight- and branched-chain alkyl groups having one or more carbon-carbon double bonds and containing about 2 to about 10 carbon atoms. Desirably, the term alkenyl refers to an alkyl group having 1 or 2 carbon-carbon double bonds and having 2 to about 6 carbon atoms.
  • alkynyl group is used herein to refer to both straight- and branched-chain alkyl W
  • alkynyl refers to an alkyl group having 1 or 2 carbon- carbon triple bonds and having 2 to about 6 carbon atoms.
  • cycloalkyl is used herein to refer to an alkyl group as previously described that is cyclic in structure and has 3 to about 10 carbon atoms, and desirably about 5 to about 8 carbon atoms.
  • substituted alkyl refers to alkyl, alkenyl, alkynyl, and cycloalkyl groups, respectively, having one or more substituents including, without limitation, halogen, CN, OH, NO 2 , amino, aryl, heterocyclic, alkoxy, aryloxy, alkylcarbonyl, alkylcarboxy, and arylthio which groups can be optionally substituted.
  • substituents can be attached to any carbon of an alkyl, alkenyl, or alkynyl group provided that the attachment constitutes a stable chemical moiety.
  • aryl refers to an aromatic system which can include a single ring or multiple rings fused or linked together where at least one part of the fused or linked rings forms the conjugated aromatic system. Desirably, the aromatic system contains 6 to 14 carbon atoms.
  • the aryl groups can include, but are not limited to, phenyl, naphthyl, biphenyl, anthryl, tetrahydronaphthyl, phenanthryl, indene, benzonaphthyl, fluorenyl, and carbazolyl.
  • substituted aryl refers to an aryl group, desirably a C 6 -C 14 aryl group, which is substituted with one or more substituents including halogen, CN, OH, NO 2 , amino, alkyl, cycloalkyl, alkenyl, alkynyl, alkoxy, aryloxy, hydroxyalkyl, alkylcarbonyl, alkylcarboxy, aminoalkyl, and arylthio, which groups can be optionally substituted. Desirably, a substituted aryl group is substituted with 1 to about 4 substituents.
  • heteroaryl refers to a stable 5- to 14-membered monocyclic or multicyclic aromatic heterocyclic ring system.
  • the heteroaryl ring has carbon atoms and one or more heteroatoms including nitrogen, oxygen, and sulfur atoms. Desirably, the heteroaryl ring has 1 to about 4 heteroatoms in the backbone of the ring. When the heteroaryl ring contains nitrogen or sulfur atoms in the backbone of the ring, the nitrogen or sulfur atoms can be oxidized.
  • heterocyclic refers to optionally saturated or partially saturated heterocyclic rings having 3 to 15 ring atoms, desirably 3 to 8 ring atoms, and desirably containing from 1 to 3 heteroatoms selected from among O, S and N.
  • heterocyclic ring contains nitrogen or sulfur atoms in the backbone of the ring, the nitrogen or sulfur atoms can be oxidized.
  • heterocyclic also refers to multicyclic rings in which a heterocyclic ring is fused to an aryl ring. The heterocyclic ring can be attached to the aryl ring through a heteroatom or carbon atom provided the resultant heterocyclic ring structure is chemically stable.
  • heterocyclic or heteroaryl groups include, without limitation, oxygen-containing rings, nitrogen-containing rings, sulfur-containing rings, mixed heteroatom-containing rings, fused heteroatom containing rings, and combinations thereof.
  • Oxygen-containing rings include, but are not limited to, furyl, tetrahydrofuranyl, pyranyl, pyronyl, and dioxinyl rings.
  • Nitrogen-containing rings include, without limitation, pyrrolyl, pyrazolyl, imidazolyl, triazolyl, pyridyl, piperidinyl, 2-oxopiperidinyl, pyridazinyl, pyrimidinyl, pyrazinyl, piperazinyl, azepinyl, triazinyl, pyrrolidinyl, and azepinyl rings.
  • Sulfur-containing rings include, without limitation, thienyl and dithiolyl rings.
  • Mixed heteroatom containing rings include, but are not limited to, oxathiolyl, oxazolyl, thiazolyl, oxadiazolyl, oxatriazolyl, dioxazolyl, oxathiazolyl, oxathiolyl, oxazinyl, oxathiazinyl, morpholinyl, thiamorpholinyl, thiamorpholinyl sulfoxide, oxepinyl, thiepinyl, and diazepinyl rings.
  • Fused heteroatom-containing rings include, but are not limited to, benzofuranyl, thionapthene, indolyl, benazazolyl, purindinyl, pyranopyrrolyl, isoindazolyl, indoxazinyl, benzoxazolyl, anthranilyl, benzopyranyl, quinolinyl, isoquinolinyl, benzodiazonyl, napthylridinyl, benzothienyl, pyridopyridinyl, benzoxazinyl, xanthenyl, acridinyl, and purinyl rings.
  • substituted heterocyclic or “substituted heteroaryl” as used herein refers to a heterocyclic group having one or more substituents including halogen, CN, OH, NO 2 , amino, alkyl, cycloalkyl, alkenyl, alkynyl, alkoxy, aryloxy, hydoxyalkyl, alkylcarbonyl, alkylcarboxy, aminoalkyl, and arylthio, which groups can be optionally substituted. Desirably, a substituted heterocyclic group is substituted with 1 to about 4 substituents.
  • alkoxy refers to the O(alkyl) group, where the point of attachment is through the oxygen-atom and the alkyl group is optionally substituted.
  • aryloxy refers to the O(aryl) group, where the point of attachment is through the oxygen-atom and the aryl group is optionally substituted.
  • hydroxyalkyl refers to the alkylOH group, where the point of attachment is through the alkyl group.
  • arylthio refers to the S(aryl) group, where the point of attachment is through the sulfur-atom and the aryl group can be optionally substituted.
  • alkylcarbonyl refers to the C(O)(alkyl) group, where the point of attachment is through the carbon-atom of the carbonyl moiety and the alkyl group is optionally substituted.
  • alkylcarboxy refers to the C(O)O(alkyl) group, where the point of attachment is through the carbon-atom of the carboxy moiety and the alkyl group is optionally substituted.
  • aminoalkyl refers to both secondary and tertiary amines where the point of attachment is through the nitrogen-atom and the alkyl groups are optionally substituted.
  • the alkyl groups can be the same or different.
  • thioalkoxy or "thioalkyl” as used herein refers to the S(alkyl) group, where the point of attachment is through the sulfur-atom and the alkyl group is optionally substituted.
  • halogen refers to Cl, Br, F, or I groups.
  • the oxindoles discussed herein also encompass tautomeric forms and salts derived from pharmaceutically or physiologically acceptable acids, bases, alkali metals and alkaline earth metals. Also included are oxindole derivatives, including, but not limited to, esters, carbamates, sulfates, ethers, oximes, carbonates, and the like.
  • Physiologically acceptable acids include those derived from inorganic and organic acids. A number of inorganic acids are known in the art and include hydrochloric, hydrobromic, hydroiodic, sulfuric, nitric, and phosphoric acids, among others.
  • organic acids include, without limitation, lactic, formic, acetic, fumaric, citric, propionic, oxalic, succinic, glycolic, glucuronic, maleic, furoic, glutamic, benzoic, anthranilic, salicylic, tartaric, malonic, mallic, phenylacetic, mandelic, embonic, methanesulfonic, ethanesulfonic, panthenoic, benzenesulfonic, toluenesulfonic, stearic, sulfanilic, alginic, and galacturonic acids, among others.
  • Physiologically acceptable bases include those derived from inorganic and organic bases.
  • inorganic bases include aluminum, calcium, lithium, magnesium, potassium, sodium, and zinc sulfate or phosphate compounds, among others.
  • organic bases include, without limitation, N,N,-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, ethylenediamine, meglumine, and procaine, among others.
  • Physiologically acceptable alkali metal salts and alkaline earth metal salts can include, without limitation, sodium, potassium, calcium and magnesium salts in the form of esters, and carbamates.
  • esters can be in the form of esters, carbamates and other conventional "pro-drug” forms, which, when administered in such form, convert to the active moiety in vivo.
  • the prodrugs are esters. See, e.g., B. Testa and J. Caldwell, "Prodrugs Revisited: The "Ad Hoc” Approach as a Complement to
  • oxindoles discussed herein also encompass "metabolites" which are unique products formed by processing of the oxindole by the cell or patient. Desirably, metabolites are formed in vivo.
  • Oxindoles IV are prepared by substituting fluoroarene I with a secondary nitrile to form nitrile II, converting nitrile II to amide III, and cyclizing amide III to form oxindole IV.
  • nitrile II can first be converted to acid V and thereby to amide III. See, Scheme 1, where R 1 -R 4 , R 6 , R 7 , and R 8 are defined above and X is defined below.
  • the method utilizes fluoroarene I as the starting material.
  • the fluoroarene has the following structure and contains a halogen in the ortho position (X).
  • R ⁇ R 4 , A, D, E, and G are defined above. More desirably, X is fluorine.
  • the fluoroarene is of the following structure, wherein R 1 - R 4 and X are defined above:
  • the fluoroarene is of the following structure:
  • X is F, Cl, or Br; and R is Br, Cl, I, or H.
  • the fluoroarene is selected from among:
  • the fluoroarene is subsequently reacted with a secondary nitrile to undergo a nucleophilic aromatic substitution.
  • a secondary nitrile is R 6 R 7 CHCN, wherein
  • R and R are defined above.
  • This reaction is typically performed in the presence of a base including silyl reagents such as sodium hexamethyldisilazide (NaHMDS), potassium hexamethyldisilazide (KHMDS), lithium hexamethyldisilazide (LiHMDS); lithium diisopropylamide (LDA); Grignard reagents such as isopropyl magnesium halide including isopropyl magnesium chloride ( 1 PrMgCl), methyl magnesium bromide (MeMgBr), vinyl magnesium bromide (vinylMgBr), o-tolyl magnesium bromide, and dibutyl magnesium chloride; sodium hydride (NaH); 1,1,3,3-tetramethylguanidine (TMG); methyl lithium (MeLi); hexyl lithium (HexLi); potassium t-butoxide (t-BuOK); potassium t-pentoxide (t-PentOK), among
  • the base is a silyl reagent, a Grignard reagent, or LDA. More desirably, the base is sodium hexamethyldisilazide, potassium hexamethyldisilazide, lithium hexamethyldisilazide, lithium diisopropylamide, isopropyl magnesium chloride, methyl magnesium bromide, o-tolyl magnesium bromide, or dibutyl magnesium chloride. More desirably, the base is a Grignard reagent including isopropyl magnesium chloride, methyl magnesium bromide, o-tolyl magnesium bromide, or dibutyl magnesium chloride.
  • the process described herein also permits selective conversion of fluoroarene I to nitrile II by reducing the production of undesired by-products.
  • By-products include isomers of nitrile II formed by reaction of the secondary nitrile with substituents other than the fluorine atom at the 1 -position of fluoroarene I.
  • the secondary nitrile reacts with one or more of the X or R 1 -R 4 substituents of fluoroarene I to form by-product(s). By doing so, the process thereby provides higher yields of the desired nitrile II product.
  • the inventors have found that when a Grignard reagent is utilized as the base for conversion of fluoroarene I to nitrile II, fewer by-products were formed. Suitable Grignard reagents include those described above. Further, use of a lower temperature promoted conversion of fluoroarene I to nitrile II. The term "lower temperatures" as used herein for this conversion includes temperatures of about -40 to 0°C. Most desirably, the temperature is about -25°C. The inventors therefore found that the combination of the Grignard reagent and lower temperature afforded nitrile II in good yields with the least amount of by-products, particularly when X is a fluorine atom.
  • nitrile II from fluoroarene I is desirable over the preparation of nitrile II via alkylation of the ⁇ -carbon of the corresponding benzylnitrile compound as described in I. Fleming, et al, J. Chem. Soc, Perkin Trans. 1, 1986, 349, which is hereby incorporated by reference.
  • alkylation of the benzylnitrile as described by Fleming is difficult to control and results in a mixture of by-products including mono- and di-alkylated nitriles, as well as unreacted benzylnitrile starting material.
  • nitrile II separation of nitrile II from any by-product and/or unreacted benzylnitrile not only requires a separate step, but the procedure for separation is difficult, thereby resulting in lower yields of nitrile II.
  • fluoroarene I to prepare nitrile II, as described in the present application, eliminates the generation of the alkylated byproducts described by Fleming. A nitrite of the following structure is thereby prepared.
  • R 1 -R 4 , A, D, E, G, X, R 6 , and R 7 are defined above.
  • a nitrile of the following structure is prepared:
  • a nitrile of the following structure is prepared.
  • 2-(5-bromo-2-fluorophenyl)-2-methylpropionitrile; 2-(3 -chloropyridin-2 ⁇ yl)-2-methylpropionitrile; 2-(3 -chloroquinoxalin-2-yl)-2- methylpropionitrile; 2-(2-fluorophenyl)-2-methylpropionitrile; 2-(2,3- difluorophenyl)-2-methylpropionitrile; and 2-(2,6-difluorophenyl)-2- methylpropionitrile are prepared.
  • nitrile group of nitrile compound II is then converted to amide III of the following structure using techniques known to those of skill in the art including, without limitation, those transformations described in Larock, Comprehensive Organic Transformations, John Wiley & Sons, New York, NY, (1999); US Patent No. 6,482,983; Fleming, 1986, cited above; and Lebedev et al., Tet. Lett. 43:1397- 1399 (2002), which are hereby incorporated by reference.
  • R 1 -R 4 , R 6 , R 7 , and X are defined above and R 8 is selected from among H, Ci to C 6 alkyl, substituted Ci to C 6 alkyl, C 1 to C 6 alkoxy, substituted C 1 to C 6 alkoxy, C 1 to C 6 aminoalkyl, substituted C 1 to C 6 aminoalkyl, C 1 to C 6 thioalkyl, substituted
  • nitrile II is converted to amide III using basic or acidic hydrolysis.
  • nitrile II is converted to amide III using Ritter or Ritter- type reactions as described in US Patent No.
  • Suitable reagents for either acidic or basic hydrolysis include those described in Larock cited above and incorporated by reference.
  • Basic hydrolysis to amide III can be performed with hydrogen peroxide and a base readily selected by one of skill in the art.
  • Acidic hydrolysis to amide II can be performed using a strong acid, such as sulfuric acid, methanesulfonic acid, or hydrochloric acid.
  • amides of the following structure are prepared.
  • amides of the following structures are prepared.
  • 2-(2,3-difluorophenyl)isobutyramide; 2-(2,6- difluorophenyl)isobutyramide; 2-(2-fluorophenyl)isobutyramide; 2-(3 -chloropyridin- 2-yl)isobutyramide; l-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide are prepared.
  • Amide III is alternatively prepared by first converting nitrile II to an acid V of the following structure, where R 1 -R 4 , R 6 , R 7 , X, A, D, E, and G are defined above, which is subsequently converted to the amide III noted above.
  • nitrile II is hydrolyzed to acid V, which is reacted with an amine, desirably at elevated temperatures in the presence of p-toluenesulfonic acid, to prepare amide III.
  • nitrile II is hydrolyzed to acid V, acid V is converted to acid chloride VI, and acid VI is converted to amide III using the transformations set forth in Larock; Fleming, 1986; or US Patent No. 6,482,983 cited above.
  • Amide III is then treated with a strong base that is capable of deprotonating the hydrogen-atom of the amide functional group.
  • Deprotonation of the amide results in the formation of the amide anion, which reacts with the halo group in the ortho position (X) to cyclize to the oxindole IV.
  • a suitable strong base to cyclize the amide and includes those reagents set forth in Fleming, Tetrahedron Lett., 1982, 23, 2053 and J. Chem. Soc, Perkin Trans. I, 1986, 349, which are hereby incorporated by reference, among others.
  • the strong base is lithium hydride, lithium diisopropylamide, alkyl lithium reagents, aryl lithium reagents, lithium hexamethyldisilazide, sodium hexamethyldisilazide, and potassium hexamethyldisilazide, among others.
  • R 1 , R 3 , and R 4 are, independently, selected from among H, chlorine, CN, C 1 to C 6 alkyl, substituted C 1 to C 6 alkyl, C 2 to C 6 alkenyl, substituted C 2 to C 6 alkenyl, C 2 to C 6 alkynyl, substituted C 2 to C 6 alkynyl, C 3 to C 8 cycloalkyl, substituted C 3 to C 8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, OSO 2 CF 3 , CF 3 , NO 2 , SR 5 , OR 5 , N(R 5 ) 2 , COOR 5 , CON(R 5 ) 2 , and SO 2 N(R 5 ) 2 ; or R 1 and R 2 ; R 2 and R 3 ; R 3 and R 4 ; R 1 , R 2 , and R 3 ; or R 2 , R 3 , and R 4 are fused to form
  • This method includes substituting a fluoroarene with a secondary nitrile to form a nitrile compound II of the structure:
  • R 2 is a leaving group such as halogen, OSO 2 CF 3 , or N 2 + ; converting nitrile II to amide III of the structure: in
  • pyrrole is of the structure:
  • the pyrrole is a cyanopyrrole.
  • the pyrrole is of the structure:
  • oxindole IV can first be brominated at the 5-position to form the bromooxindole compound VII, which is thereby reacted with the pyrrole noted above to form the pyrrole oxindole VIII.
  • leaving group refers to any substituent that is displaced upon the reaction with another reagent.
  • leaving groups include, without limitation, boron-containing leaving groups such as those described in US Patent Application Publication No. US-2005-0272702-A1, which is hereby incorporated by reference.
  • the leaving group is the following:
  • the oxindole compound prepared is of the following structure:
  • a method for preparing 5-(7-fluoro-3,3-dimethyl-2- oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile includes substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
  • a method for preparing 5-(7-fluoro-3,3-dimethyl-2- oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile includes substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
  • the l-methyl-5-cyano-2 -pyrrole compound can be a boronate salt, borinate salt, boronic ester, borinic ester, boronic acid, orborinic acid.
  • the 1- methyl-5-cyano-2-pyrrole is a boronic acid.
  • the l-methyl-5-cyano- 2-pyrrole compound is 5-[l,3,6,2]dioxazaborocan-2-yl-l -methyl- lH-pyrrole-2- carbonitrile, the preparation of which is described in US Patent Application Publication No. US-2005-0272702-A1, which is hereby incorporated by reference.
  • thio-oxindole compounds are provided. These thio-oxindole compounds can be prepared directly from the oxindoles prepared as described above using thionating agents known in the art. Suitable thionating agents include, without limitation, 2,4-bis(4-methoxyphenyl)-l,3- dithia-2,4-diphosphetane-2,4-disulfide (Lawesson's reagent) or phosphorus pentasulfide.
  • thionating agents include, without limitation, 2,4-bis(4-methoxyphenyl)-l,3- dithia-2,4-diphosphetane-2,4-disulfide (Lawesson's reagent) or phosphorus pentasulfide.
  • methods for preparing thio-oxindole compounds include preparing nitrile II as described above; converting nitrile II to amide III; converting amide IQ to thioamide IX; and cyclizing thioamide IX to thio-oxindole X. See, Scheme 6.
  • methods for preparing iminobenzo[b]thiophene compounds include preparing nitrile II as described above; converting nitrile II to amide III; converting amide III to thioamide IX; and cyclizing thioamide IX to iminobenzo[b]thiophene XI. See, Scheme 6.
  • reagents can be utilized to cyclize the thioamide to the iminobenzo[b]thiophene and include, without limitation, bases such as those described above or weaker bases thereof which could readily be selected by one of skill in the art.
  • methods for preparing benzo[b]thiophenone compounds include preparing nitrile II as described above; converting nitrile II to amide III; converting amide III to thioamide IX; cyclizing thioamide IX to iminobenzo[b]thiophene XI; and converting iminobenzo[b]thiophene XI to benzo[b]thioophenone XII. See, Scheme 6.
  • Also provided is a method for preparing thio-oxindole compounds including converting fluoroarene I to nitrile II; converting nitrile II to thioamide IX; and cyclizing thioamide IX to thio-oxindole X. See, Scheme 7.
  • a method for preparing benzo[b]thiophenone compounds include converting fluoroarene I to nitrile II; converting nitrile II to thioamide IX; cyclizing thioamide IX to iminobenzo[b]thiophene XI; and converting iminobenzo[b]thiophene XI to benzo[b]thiophenone XII. See, Scheme 7.
  • the nitrile II can be converted to a thioamide using techniques described in the art and as described in US Patent Application Publication No. US-2005-0227971- Al, which is hereby incorporated by reference.
  • the nitrile is converted to a thioamide using a base and a sulfur-containing agent (See, R. Shabana, H. J. Meyer, S.-O. Lawesson Phosphorus and Sulfur 1985, 25, 297).
  • the sulfur- containing agent includes, without limitation, a dialkyldithiophosphate, a diaryldithiophosphate, hydrogen sulfide (H 2 S), 2,4-bis(4-methoxyphenyl)-l,3-dithia- 2,4-diphosphetane-2,4-disulfide (Lawesson's reagent), or phosphorus pentasulfide.
  • the sulfur-containing agent is a dialkyldithiophosphate or diaryldithiophosphate, and more desirably diethyldithiophosphate.
  • the base is typically an amine.
  • the amine is an alkylated amine including N,N- diisopropylethylamine (H ⁇ nig's base), triethylamine, or pyridine, among others.
  • the iminobenzo[b]thiophene VI can then be converted to the corresponding benzo[b]thiophenone XII using reagents known to those of skill in art.
  • the imine moiety of the benzo[b]thiophene can be protonated and thereby hydrolyzed to a carbonyl.
  • the imine moiety can be protonated with a strong acid such as hydrochloric acid, hydrosulfuric acid, and triflic acid, among others, and thereby hydrolyzed to a carbonyl group to provide a benzo[b]thiophenone XII.
  • Example 1 Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methyIpropionitrile in the presence of various bases.
  • the reaction mixture contained a number of side-products. b 75 and 16% of the respective tert-pentoxyethers and minute amounts of the desired nitriles.
  • Example 2 Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methylpropionitrile in the presence of isopropylmagnesium chloride in various solvents.
  • Example 2 This example was performed as described in Example 1, whereby seven samples were prepared by dissolving 1,2,3-trifluorobenzene (1.32 g, 0.01 mol) and 2- methylpropionitrile (0.9 mL, 0.69 g, 0.01 mol) in the solvent (8 mL each) noted in Table 2. Isopropylmagnesium chloride (2M in THF, 5 mL each) was independently added dropwise to these mixtures. The mixtures were then heated to 35 0 C over 3 hours, cooled to ambient temperature and quenched with 5% HCl (6 mL). The reaction mixture containing triethylamine was additionally treated with concentrated hydrochloric acid. The organic phases were separated and the solvents were evaporated. The residues were analyzed by GC/MS as solutions in acetonitrile.
  • reaction mixture contained numerous side-products.
  • Example 3 Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methylpropionitrile in the presence of isopropylmagnesium chloride at various temperatures.
  • the reaction tubes of Mettler Toledo MiniBlockTM were independently charged with the haloarenes (0.01 mol) identified below and a solution of 2- methylpropionitrile in THF (8.5 mL, 0.01 mol) which was prepared from the nitrile (14 g) and THF (160 mL). An equimolar amount of the base (0.01 mol) was independently added to each tube dropwise at ambient temperature.
  • the reaction mixtures were heated to 65 0 C over 1 hour, cooled to ambient temperature and quenched with 5% HCl (6 mL). The organic phases were separated and the solvents were evaporated.
  • the crude product mixtures were examined using gas chromatography (GC)/mass spectroscopy (MS) and proton nuclear magnetic resonance ( 1 H-NMR).
  • haloarene 1 -bromo-3,4-difluorobenzene
  • base isopropylmagnesium chloride (2M in THF);
  • haloarene 2,3-dichloropyridine; base: isopropylmagnesium chloride (2M in THF); 1.237 grams of:
  • haloarene 2,3 -dichloroquinoxaline; base: isopropylmagnesium chloride 1 (2M in THF); product: 2-(3-chloroquinoxalin-2-yl)-2-methylpropionitrile (38.1% by GC/MS) and residual haloarene (61.1 %).
  • base isopropylmagnesium chloride 1 (2M in THF)
  • product 2-(3-chloroquinoxalin-2-yl)-2-methylpropionitrile (38.1% by GC/MS) and residual haloarene (61.1 %).
  • haloarene 1 -chloro-2-fluorobenzene; base: o-tolylmagnesium chloride (IM in THF); products: 2-(2-chlorophenyl)-2-methylpropionitrile (29.6% by GC/MS); residual haloarene (47.9%); and 2'-methylisobutyrophenone (12.7%)
  • haloarene l-bromo-2-fluorobenzene; base: sodium hexamethyldisilazide (IM in THF); product: 2-(2-bromophenyl)-2-methylpropionitrile (5.2% by GC/MS) and residual haloarene (76.8%)
  • substrate 1,2-difluorobenzene
  • base dibutylmagnesium chloride (IM in heptane)
  • products 2-(2-fluorophenyl)-2-methylpropionitrile (2.8% by GC/MS); 2- methylheptan-3-one (29.0%); and its imine analog (57.8%)
  • Example 5 Reaction of 1 ,2-difluorobenzene with various secondary nitriles in the presence of isopropylmagnesium chloride in THF.
  • nitrile 2-norbornanecarbonitrile
  • nitrile cyclohexanecarbonitrile; products: l-(2-fluorophenyl)cyclohexanecarbonitrile (43.3% by GC/MS) and l-cyclohexyl-2-methylpropanone (33.2%)
  • Example 7 Hydrolysis of a crude mixture of 2-(2,3-difluorophenyl)-2- methylpropionitrile and 2-(2,6-difluorophenyl)-2-methylpropionitrile.
  • Example 8 Thionation of a crude mixture of 2-(2,3- difluorophenyl)isobuty ⁇ amide and 2-(2,6-difluorophenyl) isobutyramide.
  • Example 9 Cyclization of a mixture of 2-(2,3-difluorophenyl)isobutyramide and 2-(2,6-difluorophenyl)isobutyramide to a mixture of 7-fluoro-3,3-dimethyl- 1 ,3-dihydroindol-2-one and 4-fluoro-3,3-dimethyl-1 ,3-dihydroindol-2-one, respectively.
  • 2-(2-Fluorophenyl)-2-methylpropionitrile (0.211 g) was magnetically stirred with aqueous solutions of 5N sodium hydroxide (2 mL), 55% tetrabutylammonium hydrogensulfate (0.1 mL) and 30% hydrogen peroxide (3 mL) for 22 hours.
  • the reaction mixture was diluted with toluene and extracted.
  • the aqueous phase was neutralized with 5% hydrochloric acid and extracted twice with ethyl acetate.
  • the combined organic extracts were washed with water, then brine, and dried over anhydrous magnesium sulfate.
  • l-(2,6-Difluorophenyl)cyclopropanecarbonitrile was also prepared by reacting 1,2,3-trifluorobenzene (2.64 g), cyclopropanecarbonitrile (1.65 g) and 0.5M potassium hexamethyldisilazide in toluene (40 mL).
  • the isolated solid (2.99 g) contained a mixture of l-(2,6-difluorophenyl)cyclopropanecarbonitrile (39.6% by GC/MS; RT 8.22 min.; authentic with the one prepared above), l-(2,3- difluorophenyl)cyclopropanecarbonitrile (12.4%; RT 8.65 min.; m/z 179, 100%), two di-substituted products with m/z 226 (37.0 and 4.4%; RT 12.6 and 14.0 min., m/z 184 (100%) and 226 (100%), respectively), and a tri-substituted product with m/z 273 (6.6%; RT 16.4 min., m/z 190 (100%)).
  • l-(2,6-Difluorophenyl)cyclopropanecarbonitrile (5.42 g) was hydrolyzed at ambient temperature with an aqueous solutions of 5N sodium hydroxide (20 mL), 55% tetrabutylammonium hydrogensulfate (0.5 mL) and 30% hydrogen peroxide (5 mL) in toluene (5 mL) for 39 hours.
  • the prepared semi-solid reaction mixture was diluted with ethyl acetate and the phases were separated.
  • the aqueous phase was neutralized with 5% hydrochloric acid and extracted twice with ethyl acetate.
  • the aqueous phase was extracted with ethyl acetate.
  • the combined organic extracts were washed with 20% brine and dried with anhydrous sodium sulfate. Filtration and evaporation yielded a light- orange liquid (12.0 g) that was mixed with concentrated sulfuric acid (2 mL) and water (1.25 mL) and the mixture was heated at 65 0 C for 8 hours. Water (25 mL) was added causing precipitation of an off-white solid. After cooling to ambient temperature and slurring the solids in water, the suspension was filtered and the solids washed with water. Drying under vacuum, followed by drying in a dry box, gave 2-(2-fluorophenyl)isobutyramide (8.6 g).
  • Example 15 Scaled-up preparation of 2-(2,3-difluorophenyl)-2- methylpropionitrile and 2-(2,6-difluorophenyl)-2-methylpropionitrile.
  • Example 18 Cyclization of 1-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide to 4'-fluorospiro[cyclopropane-1 ,3'-indol]-2'(1 ⁇ )-one.
  • Lithium hydride powder (0.054 g, 6.75 mmol) was placed in a 25-mL flask equipped with a thermocouple, condenser with nitrogen inlet, septum and a magnetic stirring bar.
  • l-(2,6-Difluorophenyl)cyclopropanecarboxylic acid amide (0.443 g, 2.2 mmol) was dissolved in N,N-dimethylformamide (DMF - 4.5 mL) and the solution was added into the flask via a syringe. The suspension was heated to 120 0 C and kept at this temperature for 4 hours.
  • reaction mixture Upon cooling, the reaction mixture was transferred into a separatory funnel, diluted with water (fizzing) and 5% hydrochloric acid solution, and extracted with ethyl acetate (3x). The combined organic extracts were extracted with 20% brine (3x) and dried over anhydrous magnesium sulfate. Filtration and evaporation gave yellowish solid (0.327 g, 82% yield).
  • Example 20 Cyclization of 2-(2,6-difluorophenyl)isobutyramide to 4-fluoro- 3,3-dimethyl-1 ,3-dihydroindol-2-one.
  • Example 21 Cyclization of 1-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide using various organic bases as solvents, at 90 and 120 °C.
  • the reaction tubes of Mettler Toledo MiniBlockTM were independently charged with l-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide (0.1 g) and the following organic bases were independently added (1 mL each): diisopropylethyl amine (H ⁇ nig's base), 2,6-lutidine, N-methylmorpholine (NMM), 2,6-di-tert-butyl-4- methylpyridine (1 g, low melting solid, mp 33-36 0 C), l,8-diazabicyclo[5.4.0]undec- 7-ene (DBU), and 1,1,3,3-tetramethylguanidine (TMG).
  • diisopropylethyl amine H ⁇ nig's base
  • NMM N-methylmorpholine
  • NMM 2,6-di-tert-butyl-4- methylpyridine
  • DBU 1,1,3,3-tetramethylguanidine
  • the vessels were heated at 90 0 C for 3 hours and upon cooling, analytical samples were withdrawn and subjected to GC/MS. The chromatograms revealed only the substrate and no product formed. The vessels were re-heated to 120 0 C and kept for 6 hours. Again, GC/MS showed no product formed.
  • Example 22 Cyclization of 2-(2-fluorophenyl)isobutyramide under various conditions (base, solvent, temperature).
  • the reaction tubes of Mettler Toledo MiniBlockTM were independently charged with 2-(2-fluorophenyl)isobutyramide (0.1 g), a solvent identified in Table 4 (4 mL each), and two equivalents of a base selected from solid lithium hydride (LiH), solid lithium hexamethyldisilazide (LiHMDS), and 2M lithium diisopropylamide (LDA) in heptane/THF/ethylbenzene.
  • the mixtures were heated to 110 °C and stirred magnetically for 4 hours.
  • samples 0.2 mL
  • samples were withdrawn, quenched with 5% HCl (1 mL), and extracted with ethyl acetate (1 mL).
  • the organic phases were analyzed by GC/MS: m/z 161 (146, 100%), RT 9.18 min.
  • the reaction tubes of Mettler Toledo MiniBlockTM were independently charged with the following an amide selected from 2-(3-chloropyridyn-2- yl)isobutyramide, 2-(2-fluoro-phenyl)-bicyclo[2.2.1]heptane-2-carboxylic acid amide, and a mixture of 2-(2,3-difluorophenyl)isobutyrthioamide and 2-(2,6- difluorophenyl)isobutyrthioamide.
  • N,N-Dimethylformamide (2 mL each) was added to each tube, followed by lithium hydride (2 equiv.) and the vessels were heated to 120 °C for 2.5 hours.
  • reaction mixtures were quenched with 5% HCl, brine, and ethyl acetate.
  • the organic phases were separated, dried over anhydrous sodium sulfate and analyzed by GC/MS. The following products were identified, respectively:

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Abstract

Methods for preparing oxindole and thio-oxindole compounds are provided, which compounds are useful as precursors to useful pharmaceutical compounds. Specifically provided are methods for preparing 5-pyrrole-3,3-oxindole compounds and 5-(7-fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile. Also provided are methods for preparing iminobenzo[b]thioρhene and benzo[b]thiophenone compounds.

Description

PROCESS FOR PREPARING 3,3-DISUBSTITUTED OXINDOLES AND THIO-OXINDOLES
The present invention relates to methods for preparing oxindole and thio- oxindole compounds, particularly 5-pyrrole-3,3-oxindoles, which compounds are useful as precursors to various pharmaceutical compounds.
BACKGROUND OF THE INVENTION
The synthetic routes to many useful compounds, including pharmaceutical drugs, typically entail a large number steps. However, the presence of numerous steps in the synthetic route to the desired product tends to result in lower yields of the product even before purification.
Many useful compounds in the art have an oxindole backbone and particularly a 3,3-disubstituted oxindole backbone. Of particular interest is 5-(7- fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2- carbonitrile, which contains a 3,3-disubstituted oxindole backbone. In fact, the current route to 5-(7-fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5-yl)-l- methyl-lH-pyrrole-2-carbonitrile involves at least 6 steps to give an overall yield of 6%.
What is needed in the art are alternate methods for preparing 3,3-disubstituted oxindole compounds and the intermediates utilized in preparation thereof.
SUMMARY OF THE INVENTION
In one aspect, methods for preparing oxindole compounds and, desirably, 3,3- disubstituted oxindole compounds are provided.
In another aspect, methods for preparing 5-pyrrole-3,3-oxindole compounds are provided.
In a further aspect, methods for preparing 5-(7-fluoro-3,3-dimethyl-2-oxo- 2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile are provided. In yet another aspect, methods for preparing thio-oxindole compounds and, desirably, 3,3-disubstituted thio-oxindole compounds are provided. In a further aspect, methods for preparing iminobenzo[b]thiophene compounds are provided.
In still another aspect, methods for preparing benzo[b]thiophenone compounds are provided.
In yet a further aspect, methods for preparing compounds of the structure are provided:
Figure imgf000003_0001
In another aspect, methods for selectively preparing a compound of the structure are provided:
Figure imgf000003_0002
In still a further aspect, 2-(5-bromo-2-fluorophenyl)-2-methylpropionitrile; 2- (3-chloropyridin-2-yl)-2-methylpropionitrile; 2-(3-chloroquinoxalin-2-yl)-2- methylpropionitrile; 2-(2-fluorophenyl)-2-methylpropionitrile; 2-(2,3- difluorophenyl)-2-methylpropionitrile; 2-(2,6-difluorophenyl)-2-methylpropionitrile; 2-(2,3-difluorophenyl)isobutyramide; 2-(2,6-difluorophenyl)isobutyramide; 2-(2- fluorophenyl)isobutyramide; 2-(3-chloropyridin-2-yl)isobutyramide; 1 -(2,6- difluorophenyl)cyclopropanecarboxylic acid amide; or a pharmaceutically acceptable salt thereof are provided.
Other aspects and advantages of the invention will be readily apparent from the following detailed description of the invention.
DETAILED DESCRIPTION OF THE INVENTION
A novel route to oxindole compounds and particularly 3,3-oxindole compounds is provided. Advantageously, a shorter route to oxindole compounds is W
also provided using 3 steps. The process includes converting a fluoroarene to a secondary nitrile substituted arene, converting the nitrile substituent to an amide, and cyclizing the amide to the oxindole compound.
Suitably, an oxindole prepared in the present method has the following structure:
Figure imgf000004_0001
wherein, R1, R2, R3, and R4 are, independently, selected from among H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COOR5, CON(R5)2, and SO2N(R5)2; or R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form (i) a 3 to 15 membered saturated or unsaturated carbon-containing ring; or (ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from among O, S, and NR11; R5 is selected from among C1 to
C6 alkyl and C1 to C6 substituted alkyl; R6 and R7 are, independently, selected from among C1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or R6 and R7 are fused to form (iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or (iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from among O, S, and NR11; R8 is selected from among H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted C1 to C6 thioalkyl,
CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; or R8 is fused with R4 to form (v) a 5 to 8 membered saturated or unsaturated carbon-containing ring; or (vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from among O, S, and NR11; wherein any of (i)-(vi) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted Ci to C6 alkoxy, orN(R5)2; R11 is absent, H, Ci to C6 alkyl, substituted Ci to C6 alkyl, aryl, or substituted aryl; A, D, E, and G are, independently, selected from among C and N, wherein if any one of A, D, E, or G are N, the corresponding R1 -R4 is optionally absent; or a pharmaceutically acceptable salt thereof. In one example, G is N. In another example, E and G are N. In a further example, D and G are N. In yet another example, A and G are N. In still a further example, R8 is H. In yet another example, R8 is cyclohexane. hi a further example, R6 and R7 are fused to form an adamantane ring. hi one embodiment, oxindoles of the following structure are prepared, where R1 -R4 and R6-R8 are defined above:
Figure imgf000005_0001
In another embodiment, the following oxindoles are prepared:
Figure imgf000005_0002
In a further embodiment, 5-(7-fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH- indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile is prepared. W
In yet another embodiment, the following oxindoles are prepared:
Figure imgf000006_0001
In still a further embodiment, the following oxindole compounds, which are covered by the compounds of US Patent Application Publication No. US 2005- 0222148-A1 hereby incorporated by reference, are prepared.
Figure imgf000006_0002
In yet another embodiment, the following oxindole compound, which is described in US Patent Application Publication No. US 2006-0030717-Al hereby incorporated by reference, is prepared.
Figure imgf000006_0003
This oxindole compound is prepared using the following intermediates.
Figure imgf000006_0004
The term "alkyl" is used herein to refer to both straight- and branched-chain saturated aliphatic hydrocarbon groups having 1 to about 10 carbon atoms, desirably 1 to about 8 carbon atoms, and more desirably 1 to about 6 carbon atoms. The term "alkenyl" is used herein to refer to both straight- and branched-chain alkyl groups having one or more carbon-carbon double bonds and containing about 2 to about 10 carbon atoms. Desirably, the term alkenyl refers to an alkyl group having 1 or 2 carbon-carbon double bonds and having 2 to about 6 carbon atoms. The term "alkynyl" group is used herein to refer to both straight- and branched-chain alkyl W
groups having one or more carbon-carbon triple bond and having 2 to about 8 carbon atoms. Desirably, the term alkynyl refers to an alkyl group having 1 or 2 carbon- carbon triple bonds and having 2 to about 6 carbon atoms.
The term "cycloalkyl" is used herein to refer to an alkyl group as previously described that is cyclic in structure and has 3 to about 10 carbon atoms, and desirably about 5 to about 8 carbon atoms.
The terms "substituted alkyl", "substituted alkenyl", "substituted alkynyl", and "substituted cycloalkyl" refer to alkyl, alkenyl, alkynyl, and cycloalkyl groups, respectively, having one or more substituents including, without limitation, halogen, CN, OH, NO2, amino, aryl, heterocyclic, alkoxy, aryloxy, alkylcarbonyl, alkylcarboxy, and arylthio which groups can be optionally substituted. These substituents can be attached to any carbon of an alkyl, alkenyl, or alkynyl group provided that the attachment constitutes a stable chemical moiety.
The term "aryl" as used herein refers to an aromatic system which can include a single ring or multiple rings fused or linked together where at least one part of the fused or linked rings forms the conjugated aromatic system. Desirably, the aromatic system contains 6 to 14 carbon atoms. The aryl groups can include, but are not limited to, phenyl, naphthyl, biphenyl, anthryl, tetrahydronaphthyl, phenanthryl, indene, benzonaphthyl, fluorenyl, and carbazolyl. The term "substituted aryl" refers to an aryl group, desirably a C6-C14 aryl group, which is substituted with one or more substituents including halogen, CN, OH, NO2, amino, alkyl, cycloalkyl, alkenyl, alkynyl, alkoxy, aryloxy, hydroxyalkyl, alkylcarbonyl, alkylcarboxy, aminoalkyl, and arylthio, which groups can be optionally substituted. Desirably, a substituted aryl group is substituted with 1 to about 4 substituents.
The term "heteroaryl" as used herein refers to a stable 5- to 14-membered monocyclic or multicyclic aromatic heterocyclic ring system. The heteroaryl ring has carbon atoms and one or more heteroatoms including nitrogen, oxygen, and sulfur atoms. Desirably, the heteroaryl ring has 1 to about 4 heteroatoms in the backbone of the ring. When the heteroaryl ring contains nitrogen or sulfur atoms in the backbone of the ring, the nitrogen or sulfur atoms can be oxidized. The term "heterocyclic" refers to optionally saturated or partially saturated heterocyclic rings having 3 to 15 ring atoms, desirably 3 to 8 ring atoms, and desirably containing from 1 to 3 heteroatoms selected from among O, S and N. When the heterocyclic ring contains nitrogen or sulfur atoms in the backbone of the ring, the nitrogen or sulfur atoms can be oxidized. The term "heterocyclic" also refers to multicyclic rings in which a heterocyclic ring is fused to an aryl ring. The heterocyclic ring can be attached to the aryl ring through a heteroatom or carbon atom provided the resultant heterocyclic ring structure is chemically stable.
A variety of heterocyclic or heteroaryl groups are known in the art and include, without limitation, oxygen-containing rings, nitrogen-containing rings, sulfur-containing rings, mixed heteroatom-containing rings, fused heteroatom containing rings, and combinations thereof. Oxygen-containing rings include, but are not limited to, furyl, tetrahydrofuranyl, pyranyl, pyronyl, and dioxinyl rings. Nitrogen-containing rings include, without limitation, pyrrolyl, pyrazolyl, imidazolyl, triazolyl, pyridyl, piperidinyl, 2-oxopiperidinyl, pyridazinyl, pyrimidinyl, pyrazinyl, piperazinyl, azepinyl, triazinyl, pyrrolidinyl, and azepinyl rings. Sulfur-containing rings include, without limitation, thienyl and dithiolyl rings. Mixed heteroatom containing rings include, but are not limited to, oxathiolyl, oxazolyl, thiazolyl, oxadiazolyl, oxatriazolyl, dioxazolyl, oxathiazolyl, oxathiolyl, oxazinyl, oxathiazinyl, morpholinyl, thiamorpholinyl, thiamorpholinyl sulfoxide, oxepinyl, thiepinyl, and diazepinyl rings. Fused heteroatom-containing rings include, but are not limited to, benzofuranyl, thionapthene, indolyl, benazazolyl, purindinyl, pyranopyrrolyl, isoindazolyl, indoxazinyl, benzoxazolyl, anthranilyl, benzopyranyl, quinolinyl, isoquinolinyl, benzodiazonyl, napthylridinyl, benzothienyl, pyridopyridinyl, benzoxazinyl, xanthenyl, acridinyl, and purinyl rings.
The term "substituted heterocyclic" or "substituted heteroaryl" as used herein refers to a heterocyclic group having one or more substituents including halogen, CN, OH, NO2, amino, alkyl, cycloalkyl, alkenyl, alkynyl, alkoxy, aryloxy, hydoxyalkyl, alkylcarbonyl, alkylcarboxy, aminoalkyl, and arylthio, which groups can be optionally substituted. Desirably, a substituted heterocyclic group is substituted with 1 to about 4 substituents. The term "alkoxy" as used herein refers to the O(alkyl) group, where the point of attachment is through the oxygen-atom and the alkyl group is optionally substituted.
The term "aryloxy" as used herein refers to the O(aryl) group, where the point of attachment is through the oxygen-atom and the aryl group is optionally substituted.
The term "hydroxyalkyl" as used herein refers to the alkylOH group, where the point of attachment is through the alkyl group.
The term "arylthio" as used herein refers to the S(aryl) group, where the point of attachment is through the sulfur-atom and the aryl group can be optionally substituted.
The term "alkylcarbonyl" as used herein refers to the C(O)(alkyl) group, where the point of attachment is through the carbon-atom of the carbonyl moiety and the alkyl group is optionally substituted. The term "alkylcarboxy" as used herein refers to the C(O)O(alkyl) group, where the point of attachment is through the carbon-atom of the carboxy moiety and the alkyl group is optionally substituted.
The term "aminoalkyl" as used herein refers to both secondary and tertiary amines where the point of attachment is through the nitrogen-atom and the alkyl groups are optionally substituted. The alkyl groups can be the same or different.
The term "thioalkoxy" or "thioalkyl" as used herein refers to the S(alkyl) group, where the point of attachment is through the sulfur-atom and the alkyl group is optionally substituted.
The term "halogen" as used herein refers to Cl, Br, F, or I groups. The oxindoles discussed herein also encompass tautomeric forms and salts derived from pharmaceutically or physiologically acceptable acids, bases, alkali metals and alkaline earth metals. Also included are oxindole derivatives, including, but not limited to, esters, carbamates, sulfates, ethers, oximes, carbonates, and the like. Physiologically acceptable acids include those derived from inorganic and organic acids. A number of inorganic acids are known in the art and include hydrochloric, hydrobromic, hydroiodic, sulfuric, nitric, and phosphoric acids, among others. Similarly, a variety of organic acids are known in the art and include, without limitation, lactic, formic, acetic, fumaric, citric, propionic, oxalic, succinic, glycolic, glucuronic, maleic, furoic, glutamic, benzoic, anthranilic, salicylic, tartaric, malonic, mallic, phenylacetic, mandelic, embonic, methanesulfonic, ethanesulfonic, panthenoic, benzenesulfonic, toluenesulfonic, stearic, sulfanilic, alginic, and galacturonic acids, among others.
Physiologically acceptable bases include those derived from inorganic and organic bases. A number of inorganic bases are known in the art and include aluminum, calcium, lithium, magnesium, potassium, sodium, and zinc sulfate or phosphate compounds, among others. A number of organic bases are known in the art and include, without limitation, N,N,-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, ethylenediamine, meglumine, and procaine, among others.
Physiologically acceptable alkali metal salts and alkaline earth metal salts can include, without limitation, sodium, potassium, calcium and magnesium salts in the form of esters, and carbamates.
These salts can be in the form of esters, carbamates and other conventional "pro-drug" forms, which, when administered in such form, convert to the active moiety in vivo. In one embodiment, the prodrugs are esters. See, e.g., B. Testa and J. Caldwell, "Prodrugs Revisited: The "Ad Hoc" Approach as a Complement to
Ligand Design", Medicinal Research Reviews, 16(3):233-241, ed., John Wiley & Sons (1996).
The oxindoles discussed herein also encompass "metabolites" which are unique products formed by processing of the oxindole by the cell or patient. Desirably, metabolites are formed in vivo.
Methods of preparing oxindole compounds, desirably 3,3-disubstituted- oxindoles, are thereby provided. Oxindoles IV are prepared by substituting fluoroarene I with a secondary nitrile to form nitrile II, converting nitrile II to amide III, and cyclizing amide III to form oxindole IV. Alternatively, nitrile II can first be converted to acid V and thereby to amide III. See, Scheme 1, where R1 -R4, R6, R7, and R8 are defined above and X is defined below. Scheme 1
Figure imgf000011_0001
The method utilizes fluoroarene I as the starting material. Desirably, the fluoroarene has the following structure and contains a halogen in the ortho position (X).
Figure imgf000011_0002
I wherein, R^R4, A, D, E, and G are defined above. More desirably, X is fluorine.
In one embodiment, the fluoroarene is of the following structure, wherein R1- R4 and X are defined above:
Figure imgf000011_0003
In another embodiment, the fluoroarene is of the following structure:
Figure imgf000012_0001
wherein, X is F, Cl, or Br; and R is Br, Cl, I, or H.
In a further embodiment, the fluoroarene is selected from among:
Figure imgf000012_0002
The fluoroarene is subsequently reacted with a secondary nitrile to undergo a nucleophilic aromatic substitution. See, for example the reagents utilized in the substitution reaction described in US Patent No. 6,303,782; JACS 2000, 122, 712; Org. Synth. 2002, 79, 209; and European Patent No. 1,046,635, which are hereby incorporated by reference. Typically, the secondary nitrile is R6R7CHCN, wherein
R and R are defined above. This reaction is typically performed in the presence of a base including silyl reagents such as sodium hexamethyldisilazide (NaHMDS), potassium hexamethyldisilazide (KHMDS), lithium hexamethyldisilazide (LiHMDS); lithium diisopropylamide (LDA); Grignard reagents such as isopropyl magnesium halide including isopropyl magnesium chloride (1PrMgCl), methyl magnesium bromide (MeMgBr), vinyl magnesium bromide (vinylMgBr), o-tolyl magnesium bromide, and dibutyl magnesium chloride; sodium hydride (NaH); 1,1,3,3-tetramethylguanidine (TMG); methyl lithium (MeLi); hexyl lithium (HexLi); potassium t-butoxide (t-BuOK); potassium t-pentoxide (t-PentOK), among others. Desirably, the base is a silyl reagent, a Grignard reagent, or LDA. More desirably, the base is sodium hexamethyldisilazide, potassium hexamethyldisilazide, lithium hexamethyldisilazide, lithium diisopropylamide, isopropyl magnesium chloride, methyl magnesium bromide, o-tolyl magnesium bromide, or dibutyl magnesium chloride. More desirably, the base is a Grignard reagent including isopropyl magnesium chloride, methyl magnesium bromide, o-tolyl magnesium bromide, or dibutyl magnesium chloride. The process described herein also permits selective conversion of fluoroarene I to nitrile II by reducing the production of undesired by-products. By-products include isomers of nitrile II formed by reaction of the secondary nitrile with substituents other than the fluorine atom at the 1 -position of fluoroarene I. In one embodiment, the secondary nitrile reacts with one or more of the X or R1 -R4 substituents of fluoroarene I to form by-product(s). By doing so, the process thereby provides higher yields of the desired nitrile II product.
The inventors have found that when a Grignard reagent is utilized as the base for conversion of fluoroarene I to nitrile II, fewer by-products were formed. Suitable Grignard reagents include those described above. Further, use of a lower temperature promoted conversion of fluoroarene I to nitrile II. The term "lower temperatures" as used herein for this conversion includes temperatures of about -40 to 0°C. Most desirably, the temperature is about -25°C. The inventors therefore found that the combination of the Grignard reagent and lower temperature afforded nitrile II in good yields with the least amount of by-products, particularly when X is a fluorine atom.
The inventors have also found that preparation of nitrile II from fluoroarene I is desirable over the preparation of nitrile II via alkylation of the α-carbon of the corresponding benzylnitrile compound as described in I. Fleming, et al, J. Chem. Soc, Perkin Trans. 1, 1986, 349, which is hereby incorporated by reference. Specifically, alkylation of the benzylnitrile as described by Fleming is difficult to control and results in a mixture of by-products including mono- and di-alkylated nitriles, as well as unreacted benzylnitrile starting material. Further, separation of nitrile II from any by-product and/or unreacted benzylnitrile not only requires a separate step, but the procedure for separation is difficult, thereby resulting in lower yields of nitrile II. However, the use of fluoroarene I to prepare nitrile II, as described in the present application, eliminates the generation of the alkylated byproducts described by Fleming. A nitrite of the following structure is thereby prepared.
Figure imgf000014_0001
II wherein, R1 -R4, A, D, E, G, X, R6, and R7 are defined above.
In one embodiment, a nitrile of the following structure is prepared:
Figure imgf000014_0002
In another embodiment, a nitrile of the following structure is prepared.
Figure imgf000014_0003
In a further embodiment, 2-(5-bromo-2-fluorophenyl)-2-methylpropionitrile; 2-(3 -chloropyridin-2~yl)-2-methylpropionitrile; 2-(3 -chloroquinoxalin-2-yl)-2- methylpropionitrile; 2-(2-fluorophenyl)-2-methylpropionitrile; 2-(2,3- difluorophenyl)-2-methylpropionitrile; and 2-(2,6-difluorophenyl)-2- methylpropionitrile are prepared.
The nitrile group of nitrile compound II is then converted to amide III of the following structure using techniques known to those of skill in the art including, without limitation, those transformations described in Larock, Comprehensive Organic Transformations, John Wiley & Sons, New York, NY, (1999); US Patent No. 6,482,983; Fleming, 1986, cited above; and Lebedev et al., Tet. Lett. 43:1397- 1399 (2002), which are hereby incorporated by reference.
Figure imgf000015_0001
III wherein, R1 -R4, R6, R7, and X are defined above and R8 is selected from among H, Ci to C6 alkyl, substituted Ci to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted
Ci to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl. In one embodiment, nitrile II is converted to amide III using basic or acidic hydrolysis. In one example, nitrile II is converted to amide III using Ritter or Ritter- type reactions as described in US Patent No. 6,482,983; and Lebedev cited above, hi another example, amide III is prepared by reacting nitrile II with an alcohol, sulfonate, phosphate, ester, or boronic ester, m a further example, amide III is prepared by reacting nitrile II with (R8O)nZ, where R8 is selected from among H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted Ci to C6 aminoalkyl, Ci to C6 thioalkyl, substituted Ci to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl, n is 0 to 3, and Z is H when n is 1, SO2 when n is 2, P=O when n is 3, C=O when n is 2, B when n is 3, S02alkyl when n is 1, (C=O)2 when n is 2, and acetyl when n is 1, under acidic or basic conditions. One of skill in the art would readily be able to select suitable reagents for either acidic or basic hydrolysis and include those described in Larock cited above and incorporated by reference. Basic hydrolysis to amide III can be performed with hydrogen peroxide and a base readily selected by one of skill in the art. Acidic hydrolysis to amide II can be performed using a strong acid, such as sulfuric acid, methanesulfonic acid, or hydrochloric acid. In one embodiment, amides of the following structure are prepared.
Figure imgf000016_0001
In another embodiment, amides of the following structures are prepared.
Figure imgf000016_0002
In a further embodiment, 2-(2,3-difluorophenyl)isobutyramide; 2-(2,6- difluorophenyl)isobutyramide; 2-(2-fluorophenyl)isobutyramide; 2-(3 -chloropyridin- 2-yl)isobutyramide; l-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide are prepared.
Amide III is alternatively prepared by first converting nitrile II to an acid V of the following structure, where R1 -R4, R6, R7, X, A, D, E, and G are defined above, which is subsequently converted to the amide III noted above.
Figure imgf000016_0003
V
Conversion of nitrile II to acid V to amide III can be performed using the transformations set forth in Larock cited above or US Patent No. 6,482,983, which are hereby incorporated by reference. In one example, nitrile II is hydrolyzed to acid V, which is reacted with an amine, desirably at elevated temperatures in the presence of p-toluenesulfonic acid, to prepare amide III. m another example, nitrile II is hydrolyzed to acid V, acid V is converted to acid chloride VI, and acid VI is converted to amide III using the transformations set forth in Larock; Fleming, 1986; or US Patent No. 6,482,983 cited above. Amide III is then treated with a strong base that is capable of deprotonating the hydrogen-atom of the amide functional group. Deprotonation of the amide results in the formation of the amide anion, which reacts with the halo group in the ortho position (X) to cyclize to the oxindole IV. One of skill in the art could readily select a suitable strong base to cyclize the amide and includes those reagents set forth in Fleming, Tetrahedron Lett., 1982, 23, 2053 and J. Chem. Soc, Perkin Trans. I, 1986, 349, which are hereby incorporated by reference, among others. Desirably, the strong base is lithium hydride, lithium diisopropylamide, alkyl lithium reagents, aryl lithium reagents, lithium hexamethyldisilazide, sodium hexamethyldisilazide, and potassium hexamethyldisilazide, among others.
Also provided are methods for preparing 5-pyrrole-3,3-oxindole compounds of the structure:
Figure imgf000017_0001
viπ wherein, R1, R3, and R4 are, independently, selected from among H, chlorine, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COOR5, CON(R5)2, and SO2N(R5)2; or R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form (i) a 3 to 15 membered saturated or unsaturated carbon-containing ring; or (ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from among O, S, and NR11; R5 is selected from among C1 to C6 alkyl and C1 to C6 substituted alkyl; R6, R7, R8, A, D, E, and G are defined above; R9 is Cj to C6 alkyl, substituted C1 to C6 alkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, or CORA; RA is H, C1 to C6 alkyl, substituted C1 to C6 alkyl, Ci to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, or substituted C1 to C6 aminoalkyl; and R10 is H, OH, NH2, CN, halogen, C1 to C6 alkyl, substituted Ci to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, or C0RA. See, Scheme 2.
Scheme 2
Figure imgf000018_0001
VIII
This method includes substituting a fluoroarene with a secondary nitrile to form a nitrile compound II of the structure:
Figure imgf000018_0002
II wherein, R2 is a leaving group such as halogen, OSO2CF3, or N2 +; converting nitrile II to amide III of the structure:
Figure imgf000019_0001
in
cyclizing amide III to oxindole IV of the following structure:
Figure imgf000019_0002
IV coupling oxindole IV with a pyrrole of the structure:
Figure imgf000019_0003
or a salt thereof; wherein, R!-R4 and R6-R10 are defined above and Y is a leaving group. In one example, the pyrrole is of the structure:
Figure imgf000019_0004
In another example, the pyrrole is a cyanopyrrole. In a further example, the pyrrole is of the structure:
Figure imgf000019_0005
IfR2 is a halogen other than bromine, or triflate, oxindole IV can first be brominated at the 5-position to form the bromooxindole compound VII, which is thereby reacted with the pyrrole noted above to form the pyrrole oxindole VIII.
The term "leaving group" as used herein refers to any substituent that is displaced upon the reaction with another reagent. There are a large number of leaving groups that can be utilized to form the 5-pyrrole-3,3-oxindole compounds and include, without limitation, boron-containing leaving groups such as those described in US Patent Application Publication No. US-2005-0272702-A1, which is hereby incorporated by reference. Desirably, the leaving group is the following:
Figure imgf000020_0001
In one embodiment, the oxindole compound prepared is of the following structure:
Figure imgf000020_0002
In a further embodiment, a method for preparing 5-(7-fluoro-3,3-dimethyl-2- oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile is provided and includes substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000020_0003
converting the nitrile to an amide of the structure:
Figure imgf000020_0004
cyclizing the amide to an oxindole of the following structure:
Figure imgf000021_0001
coupling the oxindole with a l-methyl-5-cyano-2-pyrrole compound.
In another embodiment, a method for preparing 5-(7-fluoro-3,3-dimethyl-2- oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile is provided and includes substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000021_0002
converting the nitrile an amide of the structure:
Figure imgf000021_0003
cyclizing the amide to an oxindole of the following structure:
Figure imgf000021_0004
coupling the oxindole with a l-methyl-5-cyano-2-pyrrole compound.
The l-methyl-5-cyano-2 -pyrrole compound can be a boronate salt, borinate salt, boronic ester, borinic ester, boronic acid, orborinic acid. Desirably, the 1- methyl-5-cyano-2-pyrrole is a boronic acid. More desirably, the l-methyl-5-cyano- 2-pyrrole compound is 5-[l,3,6,2]dioxazaborocan-2-yl-l -methyl- lH-pyrrole-2- carbonitrile, the preparation of which is described in US Patent Application Publication No. US-2005-0272702-A1, which is hereby incorporated by reference. 5-(7-Fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5-yl)-l-methyl-lH- pyrrole-2-carbonitrile can also be prepared by substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000022_0001
converting the nitrile to an amide of the structure:
Figure imgf000022_0002
cyclizing the amide to an oxindole of the following structure:
Figure imgf000022_0003
brominating the oxindole to form a compound of the structure:
Figure imgf000022_0004
coupling the brominated oxindole with a l-methyl-5-cyano-2-pyrrole compound as described above.
In one embodiment, 5-(7~Fluoro-3,3-dimethyl-2-oxo-2,3-dihydro-lH-indol-5- yl)-l -methyl- lH-pyrrole-2-carbonitrile is prepared according to the sequence of steps provided in Scheme 3. Scheme 3
Figure imgf000023_0001
MeI NaH 18-C-6
Figure imgf000023_0002
Br2 I CH2CI21 AcOH 250C, 2 h
Na2CO3, 4 h
Figure imgf000023_0004
Figure imgf000023_0003
In another embodiment, a method of preparing a compound of the structure is also provided:
Figure imgf000023_0005
wherein said method includes: substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000023_0006
converting the nitrile to an amide of the structure:
Figure imgf000023_0007
cyclizing the amide to an oxindole of the following structure:
Figure imgf000024_0001
brominating the oxindole to form a compound of the structure:
Figure imgf000024_0002
coupling the brominated oxindole with a l-methyl-5-cyano-2-pyrrole compound to form the product described above. See, Scheme 4.
Scheme 4
Figure imgf000024_0003
Figure imgf000024_0004
Li still another embodiment, a method of preparing a compound of the structure is provided:
Figure imgf000024_0005
wherein the method includes alkylating a benzylnitrile to form a compound of the structure:
Figure imgf000024_0006
converting the nitrile to an amide of the structure:
Figure imgf000025_0001
cyclizing the amide to an oxindole of the following structure:
Figure imgf000025_0002
brominating the oxindole to form a compound of the structure:
Figure imgf000025_0003
coupling the brominated oxindole with a l-methyl-5-cyano-2-pyrrole compound to form the product described above. See, Scheme 5.
Scheme 5
Figure imgf000025_0004
In a further embodiment, methods of preparing thio-oxindole compounds are provided. These thio-oxindole compounds can be prepared directly from the oxindoles prepared as described above using thionating agents known in the art. Suitable thionating agents include, without limitation, 2,4-bis(4-methoxyphenyl)-l,3- dithia-2,4-diphosphetane-2,4-disulfide (Lawesson's reagent) or phosphorus pentasulfide. In yet another embodiment, methods for preparing thio-oxindole compounds are provided and include preparing nitrile II as described above; converting nitrile II to amide III; converting amide IQ to thioamide IX; and cyclizing thioamide IX to thio-oxindole X. See, Scheme 6.
Scheme 6
Figure imgf000026_0001
Figure imgf000026_0002
XiI xi
In still a further embodiment, methods for preparing iminobenzo[b]thiophene compounds are provided and include preparing nitrile II as described above; converting nitrile II to amide III; converting amide III to thioamide IX; and cyclizing thioamide IX to iminobenzo[b]thiophene XI. See, Scheme 6.
Several reagents can be utilized to cyclize the thioamide to the iminobenzo[b]thiophene and include, without limitation, bases such as those described above or weaker bases thereof which could readily be selected by one of skill in the art. In yet another embodiment, methods for preparing benzo[b]thiophenone compounds are provided and include preparing nitrile II as described above; converting nitrile II to amide III; converting amide III to thioamide IX; cyclizing thioamide IX to iminobenzo[b]thiophene XI; and converting iminobenzo[b]thiophene XI to benzo[b]thioophenone XII. See, Scheme 6.
Also provided is a method for preparing thio-oxindole compounds including converting fluoroarene I to nitrile II; converting nitrile II to thioamide IX; and cyclizing thioamide IX to thio-oxindole X. See, Scheme 7.
Scheme 7
Figure imgf000027_0001
Figure imgf000027_0002
Xl XII
Further provided is a method for preparing iminobenzo[b]thiophene compounds including converting fluoroarene I to nitrile II; converting nitrile II to thioamide IX; and cyclizing thioamide IX to iminobenzo[b]thiophene XI. See, Scheme 7. A method for preparing benzo[b]thiophenone compounds are also provided and include converting fluoroarene I to nitrile II; converting nitrile II to thioamide IX; cyclizing thioamide IX to iminobenzo[b]thiophene XI; and converting iminobenzo[b]thiophene XI to benzo[b]thiophenone XII. See, Scheme 7. The nitrile II can be converted to a thioamide using techniques described in the art and as described in US Patent Application Publication No. US-2005-0227971- Al, which is hereby incorporated by reference. Typically, the nitrile is converted to a thioamide using a base and a sulfur-containing agent (See, R. Shabana, H. J. Meyer, S.-O. Lawesson Phosphorus and Sulfur 1985, 25, 297). The sulfur- containing agent includes, without limitation, a dialkyldithiophosphate, a diaryldithiophosphate, hydrogen sulfide (H2S), 2,4-bis(4-methoxyphenyl)-l,3-dithia- 2,4-diphosphetane-2,4-disulfide (Lawesson's reagent), or phosphorus pentasulfide. Desirably, the sulfur-containing agent is a dialkyldithiophosphate or diaryldithiophosphate, and more desirably diethyldithiophosphate. The base is typically an amine. Desirably, the amine is an alkylated amine including N,N- diisopropylethylamine (Hϋnig's base), triethylamine, or pyridine, among others.
The iminobenzo[b]thiophene VI can then be converted to the corresponding benzo[b]thiophenone XII using reagents known to those of skill in art. Specifically, the imine moiety of the benzo[b]thiophene can be protonated and thereby hydrolyzed to a carbonyl. In one example, when R is H, the imine moiety can be protonated with a strong acid such as hydrochloric acid, hydrosulfuric acid, and triflic acid, among others, and thereby hydrolyzed to a carbonyl group to provide a benzo[b]thiophenone XII.
The following examples are provided to illustrate the invention and do not limit the scope thereof. One skilled in the art will appreciate that although specific reagents and conditions are outlined in the following examples, modifications can be made which are meant to be encompassed by the spirit and scope of the invention. EXAMPLES
Example 1. Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methyIpropionitrile in the presence of various bases.
The reaction tubes of Mettler Toledo MiniBlock™ were independently charged with 1,2,3-trifluorobenzene (1.32 g, 0.01 mol). A solution of 2- methylpropionitrile (14 g) in toluene (160 niL) was prepared and 8.5 rnL (containing 0.01 mol of 2-methylpropionitrile) was dispensed to each tube. Equimolar amounts of the bases in Table 1 were then added dropwise at ambient temperature. The mixtures were heated to 65 0C over 3 hours, cooled to ambient temperature and quenched with 5% hydrochloric acid (6 mL each). The organic phases were separated and solvents evaporated. The residues were analyzed by GC/MS as solutions in acetonitrile.
Table 1 Normalized (area %) product distribution
Figure imgf000029_0001
The reaction mixture contained a number of side-products. b75 and 16% of the respective tert-pentoxyethers and minute amounts of the desired nitriles.
C66 and 22% of the respective tert-butoxyethers and minute amounts of the desired nitriles. d33.5% isomer A, 5.2% isomer B, in addition to a number of side-products. e5.5% isomer A, 0.7% isomer B, in addition to a number of side-products. These data illustrate isomer A could be isolated as the major product, particularly when using the Grignard bases.
Example 2. Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methylpropionitrile in the presence of isopropylmagnesium chloride in various solvents.
This example was performed as described in Example 1, whereby seven samples were prepared by dissolving 1,2,3-trifluorobenzene (1.32 g, 0.01 mol) and 2- methylpropionitrile (0.9 mL, 0.69 g, 0.01 mol) in the solvent (8 mL each) noted in Table 2. Isopropylmagnesium chloride (2M in THF, 5 mL each) was independently added dropwise to these mixtures. The mixtures were then heated to 35 0C over 3 hours, cooled to ambient temperature and quenched with 5% HCl (6 mL). The reaction mixture containing triethylamine was additionally treated with concentrated hydrochloric acid. The organic phases were separated and the solvents were evaporated. The residues were analyzed by GC/MS as solutions in acetonitrile.
Table 2
Figure imgf000030_0001
' The reaction mixture contained numerous side-products.
These data illustrate that the ether solvents were most useful in isolating the isomer A compound as the major product. Example 3. Product distribution in the reaction of 1 ,2,3-trifluorobenzene and 2-methylpropionitrile in the presence of isopropylmagnesium chloride at various temperatures.
Three flasks were equipped with a thermocouple, condenser with a nitrogen inlet, and a magnetic stirring bar. 1,2,3-trifluorobenzene (1.32 g, 0.01 mol) and 2- methylpropionitrile (0.9 mL, 0.69 g, 0.01 mol) were added to each flask and thereby dissolved in THF (8 mL). The contents of the first flask were cooled to -25 0C; the contents of the second flask were cooled to 00C; and the contents of the third flask were heated to 60 0C. Isopropylmagnesium chloride (2M in THF, 5 mL each) was added dropwise to each solution maintaining the respective reaction temperatures. After 2 hours, the reactions were quenched with 5% HCl (6 mL each). The organic phases were separated and the solvent was evaporated. The residues were analyzed by GC/MS as solutions in acetonitrile. See, Table 3.
Table 3 Normalized (area %) product distribution
Figure imgf000031_0001
These data illustrate that temperature has a minimal effect on the isomer distribution. However, the use of a lower temperature provides a higher amount of Isomer A.
Example 4. Reaction of haloarenes and 2-methylpropionitrile in the presence of various bases in THF.
The reaction tubes of Mettler Toledo MiniBlock™ were independently charged with the haloarenes (0.01 mol) identified below and a solution of 2- methylpropionitrile in THF (8.5 mL, 0.01 mol) which was prepared from the nitrile (14 g) and THF (160 mL). An equimolar amount of the base (0.01 mol) was independently added to each tube dropwise at ambient temperature. The reaction mixtures were heated to 65 0C over 1 hour, cooled to ambient temperature and quenched with 5% HCl (6 mL). The organic phases were separated and the solvents were evaporated. The crude product mixtures were examined using gas chromatography (GC)/mass spectroscopy (MS) and proton nuclear magnetic resonance (1H-NMR). A.
Figure imgf000032_0001
haloarene: 1 -bromo-3,4-difluorobenzene; base: isopropylmagnesium chloride (2M in THF);
0.642 grams of products:
(i) 2-(5-bromo-2-fluorophenyl)-2-methylpropionitrile: major, 73.1% by GC/MS;
1H-NMR (CDCl3): δ 7.59 (H6, dd, 6.8, 2.4 Hz), 7.44 (H4, ddd, 8.6, 4.4, 2.4), 7.01 (H3, dd, 11.2, 8.8), 1.785 (s, 6H5 CH3);
(ii) 2-(4-bromo-2-fluorophenyl)-2-methylpropiorritrile : minor, 9.1% by GC/MS;
(iii) l-(3,4-difluorophenyl)-2-methylpropan-l-one: minor, 15% by GC/MS.
B.
Figure imgf000032_0002
haloarene: 2,3-dichloropyridine; base: isopropylmagnesium chloride (2M in THF); 1.237 grams of:
(i) 2-(3-chloropyridin-2-yl)-2-methylpropionitrile 50% yield as evidenced by 1H-NMR; Structure assignment was based on GC/MS and 1H-NMR data (CDCl3): δ 8.48 (H6, dd, 4.4, 1.6 Hz), 7.76 (H4, dd, 8.0, 1.6), 7.29 (H5, dd, 8.0, 4.8), 1.87 (s, 6H, CH3); 13C-NMR data (CDCl3): δ 154.20 ppm C2, 147.05 C6, 139.45 C4, 131.03 C3, 124.37 C5, 123.10 CN, 38.59 C, 26.59 CH3; and
(ii) residual haloarene: 50%.
C.
Figure imgf000033_0001
major haloarene: 2,3-dichloroquinoxaline; base: potassium hexamethyldisilazide (0.5M in toluene);
0.988 grams of:
(i) 2-(3-chloroquinoxalin-2-yl)-2-methylpropionitrile: 95.9% yield as evidenced by GC/MS);
1H-NMR (DMSOd6): δ 8.19-8.15 (m, IH), 8.13-8.10 (m, IH), 8.01- 7.96 (m, 2H), 1.94 (s, 6H);
(ii) residual haloarene: 2.82%; and
(iii) 2-[3-(cyanodimethylmethyl)-quinoxalin-2-yl]-2-methylpropionitrile: 1.32% yield.
D.
Figure imgf000033_0002
haloarene : 2,3 -dichloroquinoxaline; base: isopropylmagnesium chloride 1 (2M in THF); product: 2-(3-chloroquinoxalin-2-yl)-2-methylpropionitrile (38.1% by GC/MS) and residual haloarene (61.1 %). E.
Figure imgf000034_0001
haloarene: 1 -chloro-2-fluorobenzene; base: o-tolylmagnesium chloride (IM in THF); products: 2-(2-chlorophenyl)-2-methylpropionitrile (29.6% by GC/MS); residual haloarene (47.9%); and 2'-methylisobutyrophenone (12.7%)
Figure imgf000034_0002
haloarene: l-bromo-2-fluorobenzene; base: sodium hexamethyldisilazide (IM in THF); product: 2-(2-bromophenyl)-2-methylpropionitrile (5.2% by GC/MS) and residual haloarene (76.8%)
G.
Figure imgf000034_0003
substrate: 1,2-difluorobenzene; base: dibutylmagnesium chloride (IM in heptane); products: 2-(2-fluorophenyl)-2-methylpropionitrile (2.8% by GC/MS); 2- methylheptan-3-one (29.0%); and its imine analog (57.8%)
Example 5. Reaction of 1 ,2-difluorobenzene with various secondary nitriles in the presence of isopropylmagnesium chloride in THF.
Mettler Toledo MiniBlock™ reaction vessels were independently charged with 1,2-difluorobenzene (0.01 mol), a nitrile (0.01 mol) identified below, and THF (8 niL). Isopropylmagnesium chloride (2M in THF, 5 mL each) was added dropwise at ambient temperature to each vessel. The reaction mixtures were heated to 65 0C over 4 hours, cooled to ambient temperature and quenched with 5% HCl (6 mL). The organic phases were separated and the solvents were evaporated. The crude product mixtures were examined using GC/MS and 1H-NMR.
A.
Figure imgf000035_0001
nitrile: 2-methylpropionitrile;
0.637 grams of 2-(2-fluoroρhenyl)-2-methylρropionitrile (97.9% by GC/MS). 1H-NMR (DMSOd6): δ 1.52-1 Al (m, 2H), 7.34-7.25 (m, 2H), 1.74 (s, 6H).
B.
Figure imgf000035_0002
nitrile: 2-norbornanecarbonitrile;
1.570 grams of the following products: (i) exo-2-(2-fluorophenyl)bicyclo[2.2.1]heptane-2-carbonitrile (95.1% by
GC/MS);
(ii) endo-2-(2-fluorophenyl)bicyclo[2.2.1]heptane-2-carbonitrile (0.73%); and
(iii) 1 -bicyclo[2.2.1 ]hept-2-yl-2-methyl-propanone (1.65%). The structure was assigned based on 1H-NMR and literature data (I. Fleming, et al, J. Chem. Soc, Perkin Trans. 1, 1986, 349; S. Caron, et al, J Am. Chem. Soc. 2000, 122, 712). C.
Figure imgf000036_0001
nitrile: cyclohexanecarbonitrile; products: l-(2-fluorophenyl)cyclohexanecarbonitrile (43.3% by GC/MS) and l-cyclohexyl-2-methylpropanone (33.2%)
Example 6. Preparation of 2~(2,3-difluorophenyl)-2-methylpropionitrile and 2- (2,6-difluorophenyl)-2-methylpropionitrile.
Figure imgf000036_0002
IM sodium hexamethyldisilazide in tetrahydrofuran (40 niL) was added in portions to a stirred solution of 1,2,3-trifluorobenzene (5.03 g) and 2- methylpropionitrile (2.81 g) in toluene (30 niL). The reaction mixture was heated to 68 °C for 3 hours, additionally stirred at ambient temperature overnight, and quenched into 5% HCl. The organic phase was separated and washed with water and brine. Evaporation of the solvent gave an oil (5.99 g) containing a 76:24 ratio of isomers: 2-(2,3-difmorophenyl)-2-methylproρiorήtrile (65.4% by GC/MS, RT 6.20 min.); 2-(2,6-difluorophenyl)-2-methylpropionitrile (20.3%, RT 6.78 min.); and 2-[3- (cyanodimethylmethyl)-2-fluorophenyl]-2-methylpropionitrile (14.1%, RT 10.4 min.). 1H-NMR (DMSO-d6): major CH3 singlet at 1.76 ppm and a minor singlet at 1.83 ppm.
Example 7. Hydrolysis of a crude mixture of 2-(2,3-difluorophenyl)-2- methylpropionitrile and 2-(2,6-difluorophenyl)-2-methylpropionitrile.
Figure imgf000036_0003
A sample of crude 2-(2,3-difluorophenyl)-2-methylpropionitrile and 2-(2,6- difluorophenyl)-2-methylpropionitrile (4.12 g) was dissolved in methanol (10 mL) and water (3 mL). Tetrabutylammonium hydrogensulfate (25 mg) and sodium percarbonate (1.20 g) were added to the methanol solution at ambient temperature, followed by a dropwise addition of 50% hydrogen peroxide (3 mL) within 5 hours.
The stirring was continued for 40 hours, after which the reaction mixture was extracted with ethyl acetate and water. The organic phase was dried over anhydrous magnesium sulfate, filtered and evaporated to provide an oil, which solidified upon evaporation with hexane to give a waxy solid (4.80 g). GC/MS showed two m/z 199 isomers: 18.5 and 63.6% (23:77 ratio; RT 9.05 and 9.27 min., respectively). 1H-NMR (DMSO-dβ) showed a major singlet at 1.60 ppm (CH3) and two major CONH2 signals at 5.98 and 5.45 ppm. These resonances were attributed to 2-(2,3-difluorophenyl)isobutyramide. Minor CONH? signals at 6.43 and 5.73 ppm were attributed to 2-(2,6-difluorophenyl)isobutyramide.
Example 8. Thionation of a crude mixture of 2-(2,3- difluorophenyl)isobutyτamide and 2-(2,6-difluorophenyl) isobutyramide.
Figure imgf000037_0001
A crude sample of 2-(2,3-difluorophenyl)isobutyramide and 2-(2,6- difluorophenyl)isobutyramide (1.86 g) was heated to 84 °C with Lawesson's reagent (2.0 g) in 1,2-dimethoxyethane (30 mL) for 16 hours. The clear, light-orange solution was cooled to ambient temperature and poured into water. The precipitated orange oil was stirred overnight to form sticky, pale yellow oil. The pale yellow oil was extracted with chloroform (3x), the organic extracts washed with water (2x), and dried over anhydrous magnesium sulfate. Filtration followed by evaporation gave a light-brown solid (2.37 g). GC/MS showed m/z 215 product (RT 11.31 min.) along with three other by-products. Example 9. Cyclization of a mixture of 2-(2,3-difluorophenyl)isobutyramide and 2-(2,6-difluorophenyl)isobutyramide to a mixture of 7-fluoro-3,3-dimethyl- 1 ,3-dihydroindol-2-one and 4-fluoro-3,3-dimethyl-1 ,3-dihydroindol-2-one, respectively.
Figure imgf000038_0001
A crude sample of 2-(2,3-difluorophenyl)isobutyramide and 2-(2,6- difluorophenyl)isobutyramide (0.548 g) was dissolved in dimethylformamide (DMF - 3 niL), treated with a small portion of lithium hydride suspended in DMF (1 mL), and heated gradually to 120 °C over 7 hours. Upon cooling, the mixture was quenched with 5% HCl and ethyl acetate. The quenched mixture was extracted twice with ethyl acetate and the combined organic phases were back-extracted with brine (3x). After drying over anhydrous magnesium sulfate, filtration and evaporation, an oil (0.373 g) was obtained that solidified on standing.
Analysis by GC/MS showed two m/z 179 isomers in 81:19 ratio (8.23 and 8.98 min., respectively). 1H-NMR (DMSOd6): 1.34 and 1.27 ppm (s, CH3; minor and major, respectively). The major isomer was identified as 7-fluoro-3,3-dimethyl- l,3-dihydroindol-2-one based on GC/MS, LC and 1H-NMR data comparison with an authentic sample, prepared by an independent route.
Example 10. Basis Hydrolysis of 2-(2-fluorophenyl)-2-methylpropionitrile.
Figure imgf000038_0002
2-(2-Fluorophenyl)-2-methylpropionitrile (0.211 g) was magnetically stirred with aqueous solutions of 5N sodium hydroxide (2 mL), 55% tetrabutylammonium hydrogensulfate (0.1 mL) and 30% hydrogen peroxide (3 mL) for 22 hours. The reaction mixture was diluted with toluene and extracted. The aqueous phase was neutralized with 5% hydrochloric acid and extracted twice with ethyl acetate. The combined organic extracts were washed with water, then brine, and dried over anhydrous magnesium sulfate. Filtration and evaporation gave 2-(2- fluorophenyl)isobutyramide as a pale-green oil that solidified on standing (0.173 g). GC/MS: m/z 181 (RT 9.80 min.). 1H-NMR (DMSOd6): 7.39-7.27 (m, 2H), 7.19- 7.07 (m, 2H), 6.83 and 6.78 (2 s, CONH2), 1.43 (s, 6H)
Example 11. Acidic Hydrolysis of 2-(3-chloropyridin-2-yl)-2-methylpropionitrile with concomitant purification.
Figure imgf000039_0001
A crude mixture of 2-(3 -chloropyridin-2-yl)-2-methylpropionitrile and 2,3- dichloropyridine (0.171 g) was dissolved in concentrated hydrochloric acid (4 mL) and the solution was heated to 90-95 °C for 5.5 hours. Upon cooling, it was diluted with water and extracted twice with dichloromethane. The aqueous phase was basified with sodium hydroxide (with cooling) to pH of 8 and extracted twice with dichloromethane. The organic extracts were washed with water and dried over anhydrous magnesium sulfate. Filtration and evaporation gave 2-(3-chloroρyridin-2- yl)isobutyramide (64 mg).
1H-NMR (DMSOd6): δ 8.48 (dd, 4.6, 1.5 Hz)5 7.83 (dd, 7.95, 1.5), 7.325 (dd, 7.95, 4.6), 6.97 and 6.93 (2 s, CONH2), 1.50 (s, 6H). The reaction illustrated that acidic hydrolysis was the preferred method of hydrolysis since the protonation solubilizes the mixture of pyridines in aqueous medium.
Further, since the 1H-NMR spectrum showed minimal by-products, it was hypothesized that the 2,3-dichloropyridine by-product (which was produced in Example 4) was hydrolyzed to 2-hydroxy-3-chloropyridine which formed a water- soluble salt (phenolate) upon treatment with NaOH. Thus, only the desired amide product was extracted into the organic phase. Example 12. Hydrolysis of exo-2-(2-fluorophenyl)bicyclo[2.2.1]heptane-2- carbonitrile.
Figure imgf000040_0001
The crude nitrile (1.51 g) noted above was heated to 75 °C with concentrated sulfuric acid (2 mL) and water (0.5 mL) for 17 hours. The reaction mixture was diluted with water and extracted twice with ethyl acetate. The organic extracts were washed twice with brine and the solvent evaporated to give a pale-brown solid (1.91 g), 2-(2-fluorophenyl)bicyclo[2.2.1]heptane-2-carboxylic acid amide. 1H-NMR (DMSO-d6) showed amide protons at 6.81 and 6.42 ppm. GC/MS: m/z 233 (purity 4.9%, RT 12.54 min.).
Example 13. Preparation of 1-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide.
Figure imgf000040_0002
l-(2,6-Difluorophenyl)cyclopropanecarbonitrile was prepared as described in
US Patent No. 4,859,232 by alkylation of 2,6-difluorophenylacetonitrile with 1,2- dibromoethane in 50% sodium hydroxide in the presence of catalytic amounts of tetrabutylammonium bromide (quantitative yield; GC/MS: m/z 179, RT 8.24 min.; 1H-NMR (DMSOd6): δ 7.58-7.48 (m, IH), 7.24-7.16 (m, 2H), 1.84-1.79 (m, 2H), 1.46-1.41 (m, 2H)). l-(2,6-Difluorophenyl)cyclopropanecarbonitrile was also prepared by reacting 1,2,3-trifluorobenzene (2.64 g), cyclopropanecarbonitrile (1.65 g) and 0.5M potassium hexamethyldisilazide in toluene (40 mL). The isolated solid (2.99 g) contained a mixture of l-(2,6-difluorophenyl)cyclopropanecarbonitrile (39.6% by GC/MS; RT 8.22 min.; authentic with the one prepared above), l-(2,3- difluorophenyl)cyclopropanecarbonitrile (12.4%; RT 8.65 min.; m/z 179, 100%), two di-substituted products with m/z 226 (37.0 and 4.4%; RT 12.6 and 14.0 min., m/z 184 (100%) and 226 (100%), respectively), and a tri-substituted product with m/z 273 (6.6%; RT 16.4 min., m/z 190 (100%)). l-(2,6-Difluorophenyl)cyclopropanecarbonitrile (5.42 g) was hydrolyzed at ambient temperature with an aqueous solutions of 5N sodium hydroxide (20 mL), 55% tetrabutylammonium hydrogensulfate (0.5 mL) and 30% hydrogen peroxide (5 mL) in toluene (5 mL) for 39 hours. The prepared semi-solid reaction mixture was diluted with ethyl acetate and the phases were separated. The aqueous phase was neutralized with 5% hydrochloric acid and extracted twice with ethyl acetate. The combined organic extracts were washed with 5% hydrochloric acid, then brine, and dried over anhydrous sodium sulfate. Filtration and evaporation gave l-(2,6~ difluorophenyl)cyclopropanecarboxylic acid amide as light-brown solid (4.98 g, 84% yield). M.p. 136.7-137.6 °C (from ethyl acetate). GC/MS: m/z 197 (purity 97.5%, RT 9.85 min.). 1H-NMR (DMSOd6): δ 7.43-7.34 (m, IH), 7.10-7.01 (m, 2H), 6.96 (br s, IH), 6.64 (br s, IH), 1.50-1.46 (m, 2H), 1.00-0.97 (m, 2H). 1H-NMR (CDCl3): δ
7.61-7.26 (m, IH), 6.98-6.90 (m, 2H), 5.44 (br s, 2H), 1.79-1.74 (m, 2H), 1.17-1.12
( (mm,, 221H). 13C-NMR (DMSOd6): 173.4, 164.2, 160.9, 130.3, 116.5, 112.1, 19.05,
15.8.
Example 14. Preparation of 2-(2-fluorophenyl)isobutyramide via acidic hydrolysis.
Figure imgf000041_0001
A 500-mL flask equipped with a nitrogen inlet, an addition funnel, magnetic stirring bar, temperature controller, condenser, and a cooling bath was charged with 1,2-difluorobenzene (22.8 g, 0.20 mol), 2-methylpropionitrile (13.8 g, 0.20 mol) and tetrahydrofuran (160 mL). Isopropylmagnesium chloride (2M in THF, 100 mL 0.20 mol) was added from the addition funnel within 30 minutes. The solution was heated to 65 0C for 6 hours. Upon cooling in an ice bath, 6N HCl (100 mL) was added dropwise so the temperature did not exceed 30 °C. The mixture was transferred into a separatory funnel and the phases were separated. The aqueous phase was extracted with ethyl acetate. The combined organic extracts were washed with 20% brine and dried with anhydrous sodium sulfate. Filtration and evaporation yielded a light- orange liquid (12.0 g) that was mixed with concentrated sulfuric acid (2 mL) and water (1.25 mL) and the mixture was heated at 65 0C for 8 hours. Water (25 mL) was added causing precipitation of an off-white solid. After cooling to ambient temperature and slurring the solids in water, the suspension was filtered and the solids washed with water. Drying under vacuum, followed by drying in a dry box, gave 2-(2-fluorophenyl)isobutyramide (8.6 g).
Example 15. Scaled-up preparation of 2-(2,3-difluorophenyl)-2- methylpropionitrile and 2-(2,6-difluorophenyl)-2-methylpropionitrile.
Figure imgf000042_0001
A 1-L, four-necked flask equipped with a nitrogen inlet, an addition funnel, an overhead mechanical stirrer, temperature controller, condenser, and a cooling bath was charged with 1,2,3-trifluorobenzene (33.7 g, 0.255 mol), 2-methylpropionitrile (17.6 g, 0.255 mol) and tetrahydrofuran (200 mL). The solution was cooled with ice/water. Isopropylmagnesium chloride (2M in THF, 128 mL, 0.256 mol) was added from the addition funnel maintaining the temperature between 4.1 and 5.1 °C. After 50 minutes, the cooling bath was replaced with a heating mantle and the reaction mixture was gradually heated to 65 °C and stirred at this temperature for 3 hours. The solution was cooled in an ice bath and 5% HCl (150 mL) was added dropwise from the addition funnel. The two liquid phases were separated and the aqueous phase was extracted with THF. The combined organic extracts were washed with brine (3x50 mL) and dried over anhydrous sodium sulfate. Filtration and evaporation of the filtrate gave an oil (28.3 g) that was distilled under reduced pressure (85-97 °C/3.3- 3.5 ton) to give 21.9 g of a 79/21 (by GC/MS; RT 7.23 and 7.80 min., respectively) mixture of 2-(2,3-difluorophenyl)-2-methylpropionitrile and 2-(2,6-difluorophenyl)- 2-methylρropionitrile, respectively. 1H-NMR (DMSOd6): δ 7.55-7.46 (m), 7.33-7.28 (m), 7.21-7.18 (m), 1.83 (m, minor CH3), 1.76 (s, major CH3) (16:84, respectively). A sample of this mixture of isomers was subjected to chromatography on silica gel with 0-4% ether in hexane to give
2-(2,3-difluorophenyl)-2-methylρropionitrile [1H-NMR (DMSOd6): δ 7.52-7.46 (m, IH), 7.33-7.29 (m, 2H), 1.76 (s, 3H)] and 2-(2,6-difluorophenyl)-2- methylpropionitrile [1H-NMR (DMS0-d6): δ 7.55-7.46 (m, IH), 7.21-7.18 (m, 2H), 1.84-1.82 (m, 3H)].
Example 16. Hydrolysis of 2-(2,3-difluorophenyl)-2-methylpropionitrile.
Figure imgf000043_0001
Hydrolysis of 2-(2,3-difluorophenyl)-2-methylpropionitrile was performed according to the procedure of Example 10 using sodium hydroxide in the presence of hydrogen peroxide to provide 2-(2,3-difluorophenyl)isobutyramide [1H-NMR (CDCl3): δ 7.17-7.08 (m, 3H)3 5.98 (br s, IH), 5.45 (br s, IH), 1.60 (s, 6H)].
Example 17. Hydrolysis of 2-(2,6-difluorophenyl)-2-methylpropionitrile.
Figure imgf000043_0002
Hydrolysis of 2-(2,6-difluorophenyl)-2-methylpropionitrile was performed according to the procedure of Example 10 using sodium hydroxide in the presence of hydrogen peroxide to provide 2-(2,6-difluorophenyl)isobutyramide [1H-NMR (CDCl3): δ 7.34-7.29 (m, IH), 6.91-6.85 (m, 2H), 6.43 (br s, IH), 5.73 (br s, IH),
1.68-1.66 (m, 6H)].
Example 18. Cyclization of 1-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide to 4'-fluorospiro[cyclopropane-1 ,3'-indol]-2'(1 Η)-one.
Figure imgf000043_0003
Lithium hydride powder (0.054 g, 6.75 mmol) was placed in a 25-mL flask equipped with a thermocouple, condenser with nitrogen inlet, septum and a magnetic stirring bar. l-(2,6-Difluorophenyl)cyclopropanecarboxylic acid amide (0.443 g, 2.2 mmol) was dissolved in N,N-dimethylformamide (DMF - 4.5 mL) and the solution was added into the flask via a syringe. The suspension was heated to 120 0C and kept at this temperature for 4 hours. Upon cooling, the reaction mixture was transferred into a separatory funnel, diluted with water (fizzing) and 5% hydrochloric acid solution, and extracted with ethyl acetate (3x). The combined organic extracts were extracted with 20% brine (3x) and dried over anhydrous magnesium sulfate. Filtration and evaporation gave yellowish solid (0.327 g, 82% yield). M.p. 171.1-
172.2 0C (from ethyl acetate). GC/MS: m/z 177 (purity 98.6%, RT 10.30 min.). 1H- NMR (DMSO-d6): δ 10.8 (br s, IH), 7.22-7.15 (m, IH), 6.79-6.71 (m, 2H), 1.78-1.74 (m, 2H), 1.47-1.42 (m, 2H).
Example 19. Cyclization of 2-(2,3-difluorophenyl)isobutyramide to 7-fluoro-
3,3-dimethyl-1 ,3-dihydroindol-2-one.
Figure imgf000044_0001
2-(2,3-Difluorophenyl)isobutyramide was cyclized to 7-fluoro-3,3-dimethyl- l,3-dihydroindol-2-one using the LiH/DMF conditions set forth in Example 18 [1H- NMR (DMSO-d6): δ 10.85 (br s, IH), 7.16-6.94 (m, 3H), 1.26 (s, 6H); GC/MS: m/z
179 (100%), RT 8.24 min.].
Example 20. Cyclization of 2-(2,6-difluorophenyl)isobutyramide to 4-fluoro- 3,3-dimethyl-1 ,3-dihydroindol-2-one.
Figure imgf000044_0002
2-(2,6-Difluorophenyl)isobutyratnide was cyclized to give 4-fluoro-3,3- dimethyl-l,3-dihydroindol-2-one using the LiH/DMF conditions set forth in Example 18 [1H-NMR (DMSOd6): δ 10.60 (br s, IH), 7.32-7.20 (m, IH), 6.77-6.70 (m, 2H), 1.34 (s, 6H); GCMS: m/z 179 (164, 100%), RT 8.99 min.].
Example 21. Cyclization of 1-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide using various organic bases as solvents, at 90 and 120 °C.
Figure imgf000045_0001
The reaction tubes of Mettler Toledo MiniBlock™ were independently charged with l-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide (0.1 g) and the following organic bases were independently added (1 mL each): diisopropylethyl amine (Hϋnig's base), 2,6-lutidine, N-methylmorpholine (NMM), 2,6-di-tert-butyl-4- methylpyridine (1 g, low melting solid, mp 33-36 0C), l,8-diazabicyclo[5.4.0]undec- 7-ene (DBU), and 1,1,3,3-tetramethylguanidine (TMG). The vessels were heated at 90 0C for 3 hours and upon cooling, analytical samples were withdrawn and subjected to GC/MS. The chromatograms revealed only the substrate and no product formed. The vessels were re-heated to 120 0C and kept for 6 hours. Again, GC/MS showed no product formed.
These data indicate that stronger bases than the listed above are necessary for the cyclization to occur.
Example 22. Cyclization of 2-(2-fluorophenyl)isobutyramide under various conditions (base, solvent, temperature).
Figure imgf000045_0002
The reaction tubes of Mettler Toledo MiniBlock™ were independently charged with 2-(2-fluorophenyl)isobutyramide (0.1 g), a solvent identified in Table 4 (4 mL each), and two equivalents of a base selected from solid lithium hydride (LiH), solid lithium hexamethyldisilazide (LiHMDS), and 2M lithium diisopropylamide (LDA) in heptane/THF/ethylbenzene. The mixtures were heated to 110 °C and stirred magnetically for 4 hours. Upon cooling to ambient temperature, samples (0.2 mL) were withdrawn, quenched with 5% HCl (1 mL), and extracted with ethyl acetate (1 mL). The organic phases were analyzed by GC/MS: m/z 161 (146, 100%), RT 9.18 min.
Table 3 Normalized (area %) of the product distribution
Figure imgf000046_0001
In a similar experiment, the bases identified in Table 4 were added in THF and the reaction mixtures heated at 65 °C for 16 hours.
Table 4 Normalized (area %) of the product distribution
Figure imgf000046_0002
These data suggest that the solvent, base, and temperature are important in determining the optimal conditions for the cyclization. Example 23. Cyclization of various halo amides and thioamides.
The reaction tubes of Mettler Toledo MiniBlock™ were independently charged with the following an amide selected from 2-(3-chloropyridyn-2- yl)isobutyramide, 2-(2-fluoro-phenyl)-bicyclo[2.2.1]heptane-2-carboxylic acid amide, and a mixture of 2-(2,3-difluorophenyl)isobutyrthioamide and 2-(2,6- difluorophenyl)isobutyrthioamide. N,N-Dimethylformamide (2 mL each) was added to each tube, followed by lithium hydride (2 equiv.) and the vessels were heated to 120 °C for 2.5 hours. Upon cooling, the reaction mixtures were quenched with 5% HCl, brine, and ethyl acetate. The organic phases were separated, dried over anhydrous sodium sulfate and analyzed by GC/MS. The following products were identified, respectively:
(i) 3,3-dimethyl-l,3-dihydropyrrolo[3,2-£]pyridine-2-one
(m/z 162, 100%; RT 9.56 min.); (ii) sρiro[bicyclo[2.2.1]heptane-2,3'-[3H]indol]-2'(l'H)-one
(m/z 213, 146 (100%); RT 12.52 min.);
(iii) 4-fluoro-3,3-dimethyl-3H-benzo[b]thiophen-2-one and 7-fluoro-3,3- dimethyl-3H-benzo[b]thiophen-2-one (m/z 196, 153 (100%); RT 7.68 and 8.19 min.).
All publications cited in this specification are incorporated herein by reference herein. While the invention has been described with reference to a particularly preferred embodiment, it will be appreciated that modifications can be made without departing from the spirit of the invention. Such modifications are intended to fall within the scope of the appended claims.

Claims

What is Claimed Is:
1. A method for preparing oxindole compounds comprising the steps of: (a) substituting a fluoroarene of formula I with a secondary nitrile:
Figure imgf000048_0001
wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COOR5, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting OfC1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one of A, D, E, or G are N, the corresponding R*-R4 is optionally absent; R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted aryl; or a pharmaceutically acceptable salt thereof;
(b) converting the nitrile substituent of the product of step (a) to an amide; and
(c) cyclizing the product of step (b) to said oxindole.
2. The method according to clairr L 1, wherein said oxindole compound is of the structure:
Figure imgf000049_0001
wherein:
R6 and R7 are independently selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11;
R8 is selected from the group consisting of H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted C1 to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; or
R8 is fused with R4 to form:
(v) a 5 to 8 membered saturated or unsaturated carbon-containing ring; or (vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein any of (iii)-(vi) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2; or a pharmaceutically acceptable salt thereof.
3. The method according to claim 1 or claim 2, wherein said secondary nitrile is R6R7CHCN, wherein:
R6 and R7 are, independently, selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (iii) or (iv) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2.
4. The method according to any one of claims 1 to 3, wherein the product of step (a) is:
Figure imgf000050_0001
wherein:
R6 and R7 are independently selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (iii) or (iv) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2.
5. The method according to any one of claims 1 to 4, wherein the product of step (b) is:
Figure imgf000051_0001
wherein:
R and R are independently selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R and R are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (iii) or (iv) are optionally substituted by Ci to C6 alkyl, substituted C1 to C6 alkyl, halogen, Ci to C6 alkoxy, substituted C1 to C6 alkoxy, orN(R5)2. R is selected from the group consisting of H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted C1 to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; or
R8 is fused with R4 to form:
(v) a 5 to 8 membered saturated or unsaturated carbon-containing ring; or
(vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein any of (iii)-(vi) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2.
6. A method for preparing an oxindole compound having the structure of formula IV:
Figure imgf000052_0001
rv comprising the steps of:
(a) substituting a fluoroarene of formula I:
Figure imgf000052_0002
I with a secondary nitrile having the formula R6R7CHCN, to form a compound of formula II:
Figure imgf000053_0001
II wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to Cs cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COOR5, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11;
R5 is selected from the group consisting OfC1 to C6 alkyl and C1 to C6 substituted alkyl;
R6 and R7 are independently selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon- containing ring; or (iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11;
R8 is selected from the group consisting of H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted C1 to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; or R8 is fused with R4 to form:
(v) a 5 to 8 membered saturated or unsaturated carbon- containing ring; or
(vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein any of (i)-(vi) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one of A, D, E, or G are N, the corresponding R1 -R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted aryl; or a pharmaceutically acceptable salt thereof;
(b) converting the nitrile substituent of compound II to an amide having the structure of formula III:
Figure imgf000054_0001
III; and
(c) cyclizing the compound III to form said oxindole IV.
7. The method according to any one of claims 1 to 6, wherein step (a) further comprises a base.
8. The method according to claim 7, wherein said base is sodium hexamethyldisilazide or isopropyl magnesium halide.
9. The method according to any one of claims 1 to 8, wherein step (b) is performed using hydrogen peroxide.
10. The method according to any one of claims 1 to 9, wherein step (c) is performed in the presence of a strong base.
11. The method according to any one of claims 1 to 10, wherein said fluoroarene is:
Figure imgf000055_0001
wherein:
X is F, Cl, or Br; and R2 is Br5 Cl, I, or H.
12. The method according to claim 11, wherein said fluoroarene is:
Figure imgf000055_0002
13. The method according to any one of claims 1 to 10, wherein the product of step (a) is:
Figure imgf000055_0003
14. The method according to any one of claims 1 to 10, wherein the product of step (b) is:
Figure imgf000056_0001
15. The method according to any one of claims 1 to 10, wherein said oxindole is of the structure:
Figure imgf000056_0002
16. A method for preparing a 5 -pyrrole-3 ,3 -oxindole compound of the structure:
Figure imgf000056_0003
wherein:
R1, R3, and R4 are independently selected from the group consisting of H, chlorine, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, CF3, NO2, SR5, OR5, N(R5)2, COOR5, CON(R5)2, and SO2N(R5)2; or
R3 and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon-containing ring; or (ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoras selected from the group consisting of O, S, and NR11;
R5 is selected from the group consisting OfC1 to C6 alkyl and C1 to C6 substituted alkyl;
R6 and R7 are, independently, selected from the group consisting Of C1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon-containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11;
R is selected from the group consisting of H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted C1 to C6 aminoalkyl, C1 to C6 thioalkyl, substituted C1 to C6 thioalkyl, CF3, aryl, substituted aryl, heteroaryl, and substituted heteroaryl; or
R8 is fused with R4 to form:
(v) a 5 to 8 membered saturated or unsaturated carbon-containing ring; or
(vi) a 5 to 8 membered heterocyclic ring containing in its backbone 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein any of (i)-(vi) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R9 is C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, or C0RA;
RA is H, C1 to C6 alkyl, substituted C1 to C6 alkyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, or substituted C1 to C6 aminoalkyl; R10 is H, OH, NH2, CN, halogen, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, C1 to C6 aminoalkyl, substituted Ci to C6 aminoalkyl, or C0RA;
R11 is absent, H, Ci to C6 alkyl, substituted Ci to C6 alkyl, aryl, or substituted aryl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one if A, D, E, or G are N5 the corresponding R1 -R4 is optionally absent; said method comprising:
(a) substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000058_0001
wherein, R2 is selected from the group consisting of halogen, N2 +, and OSO2CF3;
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000058_0002
;
(c) cyclizing the product of step (b) to a compound of the following structure:
Figure imgf000058_0003
(d) coupling the product of step (c) with a pyrrole of the structure:
R10 , or a salt thereof; wherein, Y is a leaving group.
17. The method according to claim 16, wherein Y is a boron-containing leaving group.
18. A method for preparing 5-(7-fiuoro-3,3-dimethyl-2-oxo-2,3-dihydro- lH-indol-5-yl)- 1 -methyl- lH-pyrrole-2-carbonitrile, comprising:
(a) substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000059_0001
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000059_0002
(c) cyclizing the product of step (b) to a compound of the following structure:
Figure imgf000059_0003
(d) coupling the product of step (c) with a 1 -methyl-5-cyano-2-pyrrole compound.
19. A method of preparing a compound of the structure:
Figure imgf000060_0001
said method comprising:
(a) substituting a fluoroarene with a secondary nitrile to form a compound of the structure:
Figure imgf000060_0002
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000060_0003
(c) cyclizing the amide to an oxindole of the following structure:
Figure imgf000060_0004
(d) brominating the oxindole to form a compound of the structure:
Figure imgf000060_0005
(e) coupling the brominated oxindole with a l-methyl-5-cyano-2-pyrrole compound.
20. A method for preparing 5-(7-fluoro-3,3-dimethyl-2-oxo-2,3-dihydro- lH-indol-5-yl)-l-methyl-lH-pyrrole-2-carbonitrile comprising: (a) reacting 1,2,3-trifluorobenzene with isobutyronitrile or methylating 1- cyanomethyl-2,3-difluorobenzene to form a compound of the structure:
Figure imgf000061_0001
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000061_0002
(c) cyclizing the product of step (b) to a compound of the following structure:
Figure imgf000061_0003
(d) brominating the product of step (c) to form a compound of the structure:
Figure imgf000061_0004
(e) coupling the product of step (d) with a l-methyl-5-cyano-2-pyrrole compound.
21. The method according to any one of claims 18 to 20, wherein said 1 - methyl-5-cyano-2-pyrrole compound is a boronate salt, borinate salt, boronic ester, borinic ester, boronic acid, or borinic acid.
22. A method for preparing 7-fluoro-3,3-dimethyl-indol-2-one, comprising:
(a) reacting 1 ,2,3-trifluorobenzene with isobutyronitrile or methylating 1 - cyanomethyl-2,3-difluorobenzene to form a compound of the structure:
Figure imgf000062_0001
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000062_0002
(c) cyclizing the product of step (b) to said 7-fluoro-3,3-dimethyl-indol-2- one.
23. The method of claim 22 further comprising (d) brominating the product of step (c) to form 5-bromo-7-fluoro-3,3- dimethyl-indol-2-one.
24. A method of preparing a compound of the structure:
Figure imgf000062_0003
said method comprising:
(a) alkylating a benzylnitrile to form a compound of the structure:
Figure imgf000062_0004
(b) converting the product of step (a) to an amide of the structure:
Figure imgf000063_0001
(c) cyclizing the amide to an oxindole of the following structure:
Figure imgf000063_0002
(d) brominating the oxindole to form a compound of the structure:
Figure imgf000063_0003
(e) coupling the brominated oxindole with a l-methyl-5-cyano-2-pyrrole compound.
25. A method for preparing thio-oxindole compounds comprising the steps of:
(a) substituting a fluoroarene of formula I with a secondary nitrile:
Figure imgf000063_0004
I wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COO(R5)2, CON(R5)2, and SO2N(R5)2; or R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting OfC1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one if A, D, E, or G are N, the corresponding R1 -R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted aryl;
(b) converting the nitrile substituent of step (a) to an amide;
(c) cyclizing the product of step (b) to an oxindole; and
(d) converting said oxindole to said thio-oxindole.
26. A method for preparing a nitrile compound of the structure:
Figure imgf000064_0001
wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, Cj to C6 alkyl, substituted Ci to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl,, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COO(R5)2, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting of C1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one of A, D, E, or G are N, the corresponding R1 -R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted aryl;
R6 and R7 are independently selected from the group consisting OfC1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon- containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (iii) or (iv) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2; said method comprising substituting a fluoroarene of the structure
Figure imgf000066_0001
with a secondary nitrile of the formula R6R7CHCN in the presence of a Grignard reagent.
27. The method according to claim 26, which is performed at a temperature of about -40 to about O0C.
28. The method according to claim 27, wherein said temperature is about
-25°C.
29. A method for selectively preparing a nitrile compound of the structure:
Figure imgf000066_0002
wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COO(R5)2, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting OfC1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one of A, D, E, or G are N, the corresponding R*-R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted Ci to C6 alkyl, aryl, or substituted aryl;
R and R are independently selected from the group consisting of C1 to C6 alkyl, substituted C1 to C6 alkyl, C3 to C14 cycloalkyl, substituted C3 to C14 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, N(R5)2, SR5, and OR5; or
R6 and R7 are fused to form:
(iii) a 3 to 8 membered saturated or unsaturated carbon- containing ring; or
(iv) a 3 to 8 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (iii) or (iv) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2; said method comprising substituting a fluoroarene of the structure:
Figure imgf000068_0001
with a secondary nitrile of the formula R6R7CHCN in the presence of a Grignard reagent at a temperature of about -25°C.
30. The method according to any one of claims 26 to 29, wherein said Grignard reagent is selected from the group consisting of isopropyl magnesium chloride, methyl magnesium bromide, vinyl magnesium bromide, o-tolyl magnesium bromide, or dibutyl magnesium chloride.
31. A method for preparing iminobenzo[b]thiophene compounds, comprising:
(a) substituting a fluoroarene of formula I with a secondary nitrile:
Figure imgf000068_0002
I wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COO(R5)2, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted C1 to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting of C1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one if A, D, E, or G are N, the corresponding R1 -R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted aryl;
(b) converting the nitrile substituent of step (a) to an amide;
(c) converting said amide to a thioamide;
(d) cyclizing said thioamide to said iminobenzo[b]thiophene.
32. A method for preparing iminobenzo[b]thiophene compounds, comprising:
(a) substituting a fluoroarene of formula I with a secondary nitrile:
Figure imgf000070_0001
I wherein:
X is halogen;
R1, R2, R3, and R4 are, independently, selected from the group consisting of H, halogen, CN, C1 to C6 alkyl, substituted C1 to C6 alkyl, C2 to C6 alkenyl, substituted C2 to C6 alkenyl, C2 to C6 alkynyl, substituted C2 to C6 alkynyl, C3 to C8 cycloalkyl, substituted C3 to C8 cycloalkyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, N2 +, OSO2CF3, CF3, NO2, SR5, OR5, N(R5)2, COO(R5)2, CON(R5)2, and SO2N(R5)2; or
R1 and R2; R2 and R3; R3 and R4; R1, R2, and R3; or R2, R3, and R4 are fused to form:
(i) a 3 to 15 membered saturated or unsaturated carbon- containing ring; or
(ii) a 3 to 15 membered heterocyclic ring containing in its backbone from 1 to 3 heteroatoms selected from the group consisting of O, S, and NR11; wherein (i) or (ii) are optionally substituted by C1 to C6 alkyl, substituted C1 to C6 alkyl, halogen, C1 to C6 alkoxy, substituted Ci to C6 alkoxy, or N(R5)2;
R5 is selected from the group consisting Of C1 to C6 alkyl and C1 to C6 substituted alkyl;
A, D, E, and G are, independently, selected from the group consisting of C and N, wherein if any one if A, D, E, or G are N, the corresponding R1 -R4 is optionally absent;
R11 is absent, H, C1 to C6 alkyl, substituted C1 to C6 alkyl, aryl, or substituted (b) converting the nitrile substituent of step (a) to a thioamide; and
(c) cyclizing said thioamide to said iminobenzo[b]thiophene.
33. The method according to claim 31 or claim 32, further comprising: (e) hydrolyzing said iminobenzo[b]thiophene to a benzo[b]thiophenone.
34. A compound selected from the group consisting of 2-(5-bromo-2- fluorophenyl)-2-methylpropionitrile; 2-(3-chloropyridin-2-yl)-2-methylpropionitrile; 2-(3-chloroquinoxalin-2-yl)-2-methylpropionitrile; 2-(2-fluorophenyl)-2- methylpropionitrile; 2-(2,3-difluorophenyl)-2-methylpropionitrile; 2-(2,6- difluorophenyl)-2-methylproρionitrile; 2-(2,3-difluorophenyl)isobutyramide; 2-(2,6- difluorophenyl)isobutyramide; 2-(2-fluorophenyl)isobutyramide; and 2-(3- chloropyridin-2-yl)isobutyramide; l-(2,6-difluorophenyl)cyclopropanecarboxylic acid amide; or a pharmaceutically acceptable salt thereof.
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