WO2006094269A2 - Anti-angiogenic compounds - Google Patents

Anti-angiogenic compounds Download PDF

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WO2006094269A2
WO2006094269A2 PCT/US2006/007865 US2006007865W WO2006094269A2 WO 2006094269 A2 WO2006094269 A2 WO 2006094269A2 US 2006007865 W US2006007865 W US 2006007865W WO 2006094269 A2 WO2006094269 A2 WO 2006094269A2
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pro
substituted
nhch
seq
arg
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PCT/US2006/007865
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French (fr)
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WO2006094269A3 (en
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Curt W. Bradshaw
Venkata Ramana Doppalapudi
Jing-Yu Lai
John Rizzo
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Covx Technologies Ireland Limited
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Priority to CA002598833A priority Critical patent/CA2598833A1/en
Priority to AU2006218437A priority patent/AU2006218437B2/en
Priority to KR1020077020180A priority patent/KR101373140B1/en
Priority to JP2007558320A priority patent/JP5167473B2/en
Priority to US11/817,668 priority patent/US20080152660A1/en
Priority to EP06737085A priority patent/EP1853294A4/en
Publication of WO2006094269A2 publication Critical patent/WO2006094269A2/en
Publication of WO2006094269A3 publication Critical patent/WO2006094269A3/en
Priority to US12/897,594 priority patent/US20110087010A1/en

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/02—Linear peptides containing at least one abnormal peptide link
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • A61K38/04—Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
    • A61K38/12—Cyclic peptides, e.g. bacitracins; Polymyxins; Gramicidins S, C; Tyrocidins A, B or C
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • A61K39/44—Antibodies bound to carriers
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P13/00—Drugs for disorders of the urinary system
    • A61P13/12—Drugs for disorders of the urinary system of the kidneys
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P17/00—Drugs for dermatological disorders
    • A61P17/06—Antipsoriatics
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00—Drugs for skeletal disorders
    • A61P19/02—Drugs for skeletal disorders for joint disorders, e.g. arthritis, arthrosis
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P27/00—Drugs for disorders of the senses
    • A61P27/02—Ophthalmic agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00—Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00—Drugs for disorders of the metabolism
    • A61P3/08—Drugs for disorders of the metabolism for glucose homeostasis
    • A61P3/10—Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04—Antibacterial agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00—Drugs for disorders of the cardiovascular system
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00—Drugs for disorders of the cardiovascular system
    • A61P9/10—Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00—Drugs for disorders of the cardiovascular system
    • A61P9/12—Antihypertensives
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/40—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against enzymes
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04—Linear peptides containing only normal peptide links
    • C07K7/06—Linear peptides containing only normal peptide links having 5 to 11 amino acids
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C07K2319/30—Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto

Definitions

  • the present invention relates to novel compounds that possess anti-angiogenic activity and methods of making and using these compounds.
  • Angiogenesis is the fundamental process by which new blood vessels are formed and is essential to a variety of normal body activities such as reproduction, development and wound repair.
  • angiogenesis is a highly regulated process under normal conditions, many diseases (characterized as "angiogenic diseases") are caused or exacerbated by unregulated angiogenesis.
  • angiogenic diseases characterized as "angiogenic diseases”
  • ocular neovascularization has been implicated as the most common cause of blindness, hi certain existing conditions such as arthritis, newly formed capillary blood vessels invade the joints and destroy cartilage.
  • new capillaries formed in the retina invade the vitreous, bleed, and cause blindness.
  • Growth and metastasis of solid tumors are also angiogenesis-dependent (J. Folkman, Cancer Res., 46:467- 473 (1986), J.
  • Thrombospondin-1 is an extracellular matrix protein secreted in response to activation of platelets by thrombin.
  • TSP-I Thrombospondin-1
  • Various studies have demonstrated that certain peptide analogs of TSP-I possess antiangiogenesic activity. See, e.g., WO 01/38397, WO 01/38347, WO 99/61476, U.S. Patent Application Pub. No. 2003/0045477, U.S. Patent Application Pub. No. 2002/0183242, U.S. Patent No. 6,774,211, U.S. Patent No. 6,716,963, U.S. Patent No. 6,753,408, and U.S. Patent No. 5,932,545.
  • the present invention provides thrombospondin receptor targeting compounds (AA targeting compounds) with unique specificity and biological properties which are useful in many applications.
  • AA targeting compounds thrombospondin receptor targeting compounds
  • the thrombospondin targeting compounds of the invention are formed by covalently linking a thrombospondin targeting agent to a combining site of an antibody.
  • Pharmaceutical compositions comprising targeting compounds of the invention and a pharmaceutically acceptable carrier are also provided.
  • a first aspect of the invention is an AA targeting agent- linker conjugate having Formula I:
  • [AA targeting agent] is a peptide selected from the group consisting of:
  • R 1 Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO:7); R 2 -Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 8); R 2 -Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO:9); R 2 -Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 10); R 2 -Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 11); ..
  • R 1 is NH(CH 3 ), N(CH 3 )C(O)CH 3 , N(CH 3 )C(O)CH 2 CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 33 N(CH 3 )C(O)CH(CH 3 )CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 2 CH 35 N(CH 3 )C(O)CH(CH 3 )CH 2 CH 3 , N(CH 3 )C(O)C 6 H 5 , N(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
  • R 2 is NH 2 , NHC(O)CH 3 , NHC(O)CH 2 CH 3 , NHC(O)CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 35 NHC(O)CH 2 CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 2 CH 3 , NHC(O)C 6 H 5 , NH(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me 5 an amino protecting group, a lipid fatty acid group or a carbohydrate;
  • R 3 is COOH, C(O)NH 2 , C(O)NH(CH 3 ), C(O)NHCH 2 CH 3 , C(O)NHCH 2 CH 2 CH 3 , C(O)NHCH(CH 3 )CH 35 C(O)NHCH 2 CH 2 CH 2 CH 3 , C(O)NHCH(CH 3 )CH 2 CH 3 , C(O)NHC 6 H 5 ,
  • L is a linker moiety having the formula -X-Y-Z, wherein:
  • X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
  • Y is an optionally present recognition group comprising at least a ring structure
  • Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody
  • X is:
  • P and P' are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N- vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), ⁇ oly(N-ethylaminoacrylate), ⁇ oly(N,N-dimethyl aminoacrylate), ⁇ oly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminome
  • R 21 , R 22 , and R 23 are each independently a covalent bond, -O-, -S-, -NR b -, substituted or unsubstituted straight or branched chain C 1-5O alkylene, or substituted or unsubstituted straight or branched chain C 1 . 50 heteroalkylene;
  • R b is hydrogen, substituted or unsubstituted CM O alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co- ⁇ alkyl; and R 21 , R 22 , and R 23 are selected such that the backbone length of X remains about 200 atoms or less.
  • X is attached to an amino acid residue in [AA targeting agent], and is an optionally substituted -R 22 -[CH 2 -CH 2 -O] t -R 23 -, -R 22 -cycloalkyl-R 23 -, -R 22 -aryl-R 23 -, or -R 22 -heterocyclyl-R 23 -, wherein t is 0 to 50.
  • R 22 is -(CH 2 ) v - 5 -(CH 2 ) u -C(O)-(CH 2 ) v - 5 -(CH 2 )U-C(O)-O-(CH 2 V, -(CH 2 ) u -C(S)-NR b -(CH 2 )v, -(CH 2 ) u -C(O)-NR b -(CH 2 ) v -, -(CH 2 ) u -NR b -(CH 2 ) v -, -(CH 2 ) U -O-(CH 2 ) V -, -(CH 2 ) u -S(0)o -2 -(CH 2 ) v - 3 -(CH 2 ) u -S(O) 0-2 -NR b -(CH 2 V, or -(CH 2 ) u -P(O
  • R 21 and R 23 are independently -(CH 2 ) S -, -(CH 2 ) r -C(O)-(CH 2 ) s -, -(CH 2 ) r -C(O)-O-(CH 2 ) v -, -(CH 2 ) r -C(S)-NR b -(CH 2 ) s - 5 -(CH 2 ) r -C(O)-NR b -(CH 2 ) s -, -(CH 2 ) r -NR b -(CH 2 ) s -, -(CH 2 ) r -O-(CH 2 ) s -, -(CH 2 ) r -S(O) 0 - 2 -(CH 2 ) s -, -(CH 2 ) r -S(0)o -2 -NR b -(CH 2
  • FIGURES IA and IB illustrate two embodiments according to Formula I that employ Ac-Sar-Gly-Val-(D- alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO:1, wherein R 1 is Ac and R 3 is absent) and Sar- Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-NHEt (SEQ ID NO:1, wherein R 1 is absent and R 3 is NHEt), respectively, as targeting agents.
  • FIGURE 2 illustrates other embodiments according to Formula I that employ Ac-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-NHEt (SEQ ID NO:3, wherein R 1 is Ac and R 3 is NHEt) as a targeting agent.
  • an AA targeting compound comprising an AA targeting agent covalently linked to a combining site of an Antibody via an intervening linker L 1 .
  • the Antibody portion of an AA targeting compound can include whole (full length) antibody, unique antibody fragments, or any other forms of an antibody as this term is used herein.
  • the Antibody is a humanized version of a murine aldolase antibody comprising a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody.
  • the Antibody is a chimeric antibody comprising the variable region from a murine aldolase antibody and a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody.
  • the Antibody is a fully human version of a murine aldolase antibody comprising a polypeptide sequence from natural or native human IgG, IgA, IgM, IgD, or IgE antibody
  • [AA targeting agent] is a peptide selected from the group consisting of:
  • R 1 Sar-Gly-Val-(D-alloIle)-Tl ⁇ r-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 1);
  • R 1 Sar-Gly-Val-(D-alloIle)-Thr-( ⁇ -Ally-Gly)-Ile-Arg-Pro-R 3 (SEQ ID NO:6), ⁇ R ⁇ Sar-Phe-VaHD-alloIle ⁇ Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID N0:7); R ⁇ LyS-GIy-VaI-(D-BlIoIIe)-ThT-NVa-IIe-ATg-PrO-R 3 (SEQ ID N0:8); R 2 -Glu-Gly-Val-(D-alloIle)-Tt ⁇ -Nva-Ile-Arg-Pro-R 3 (SEQ ID N0:9); R 2 -Pro-Gly- VaI-(D-BlIoIIe)-ThT-NVa-IIe-ATg-PrO-R 3 (SEQ ID NO: 10); R 2 -Pro-(4-Cyano-P
  • R 1 is NH(CH 3 ), N(CH 3 )C(O)CH 3 , N(CH 3 )C(O)CH 2 CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 35 N(CH 3 )C(O)CH(CH 3 )CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 2 CH 35 N(CH 3 )C(O)CH(CH 3 )CH 2 CH 3 , N(CH 3 )C(O)C 6 H 5 , N(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
  • R 2 is NH 2 , NHC(O)CH 3 , NHC(O)CH 2 CH 3 , NHC(O)CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 3 , NHC(O)CH 2 CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 2 CH 3 , NHC(O)C 6 H 5 , NH(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
  • R 3 is COOH 5 C(O)NH 2 , C(O)NH(CH 3 ), C(O)NHCH 2 CH 3 , C(O)NHCH 2 CH 2 CH 3 , C(O)NHCH(CH 3 )CH 35 C(O)NHCH 2 CH 2 CH 2 CH 3 , C(O)NHCH(CH 3 )CH 2 CH 3 , C(O)NHC 6 H 55
  • L' is a linker moiety having the formula -X-Y-Z', wherein:
  • X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
  • Y is an optionally present recognition group comprising at least a ring structure
  • Z is a group that is covalently linked to a side chain in a combining site of an antibody
  • X is: -R 22 -P-R 23 - or -R 22 -P-R 21 -P'-R 23 -
  • P and P' are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer side chains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyreiie, polyaminoacrylate, ⁇ oly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate
  • R 21 , R 22 , and R 23 are each independently a covalent bond, -O-, -S-, -NR b -, substituted or unsubstituted straight or branched chain C 1 - S o alkylene, or substituted or unsubstituted straight or branched chain C 1-5O heteroalkylene;
  • R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co- ⁇ alkyl, or substituted or unsubstituted aryl-Co -6 alkyl;
  • R 21 , R 22 , and R 23 are selected such that the backbone length of X remains about 200 atoms or less.
  • X is attached to an amino acid residue in [AA targeting agent], and is an optionally substituted -R 22 -[CH 2 -CH 2 -O] t -R 23 -, -R 22 -cycloalkyl-R 23 -, -R 22 -aryl-R 23 -, or -R 22 -heterocyclyl-R 23 -, wherein t is 0 to 50.
  • R 22 is -(CH 2 ) V -, -(CH 2 ) U -C(O)-(CH 2 ) V -, -(CH 2 ) U -C(O)-O-(CH 2 ) V -, -(CH 2 )u-C(S)-NR b -(CH 2 ) v - 5 -(CH 2 ) u -C(O)-NR b -(CH 2 ) v -, -(CH 2 ) u -NR b -(CH 2 ) v -, -(CH 2 ) U -O-(CH 2 ) V -, -(CH 2 ) u -S(0)o -2 -(CH 2 ) v -, -(CH 2 ) u -S(O) 0-2 -NR b -(CH 2 ) v -, or -(CH 2 ) V -, -(CH 2 ) U
  • R 21 and R 23 are independently -(CH 2 ) S -, -(CH 2 ) r -C(O)-(CH 2 ) s -, -(CH 2 ) r -C(O)-O-(CH 2 ) v -, -(CH 2 ) r -C(S)-NR b -(CH 2 ) s -, -(CH 2 ) r -C(O)-NR b -(CH 2 ) s -, -(CH 2 ) r -NR b -(CH 2 ) s -, -(CH 2 VO-(CH 2 ) S -, -(CH 2 ) r -S(0)o -2 -(CH 2 ) s -, -(CH 2 ) r -S(O) 0 .
  • Exemplary compounds in accordance with Formula II, wherein Antibody is the humanized aldolase antibody h38c2 IgGl include:
  • an AA targeting compound in which two AA targeting agents, which may be the same or different, are each covalently linked to a combining site of an antibody.
  • the Antibody portion of an AA targeting compound can include whole (full length) antibody, unique antibody fragments, or any other forms of an antibody as this term is used herein.
  • the Antibody is a humanized version of a murine aldolase antibody comprising a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody.
  • the Antibody is a chimeric antibody comprising the variable region from a murine aldolase antibody and a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody.
  • the Antibody is a fully human version of a murine aldolase antibody comprising a polypeptide sequence from natural or native human IgG, IgA, IgM, IgD, or IgE antibody.
  • FIGURE 3 illustrates embodiments according to Formula III that employ Sar-Gly-Val-(D-alloIle)-Thr- Nva-Ile-Arg-Pro-NHEt (SEQ ID NO:1, wherein R 1 is absent and R 3 is NHEt) as a targeting agent.
  • FIGURE 4 illustrates other embodiments according to Formula III that employ Ac- Sax-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO:1) as a targeting agent.
  • FIGURE 5 illustrates other embodiments according to Formula III that employ Ac-Sar-Gly- VaI-(D- alloIle)-Thr-Nva-Lys-Arg-Pro-NHEt (SEQ ID NO:3) as a targeting agent.
  • methods of delivering or administering AA targeting compounds of the invention and methods of treatment using AA targeting compounds of the invention include administering a therapeutically effective amount of an AA targeting compound of the invention to the subject.
  • Diseases and conditions that may be treated include cancer, arthritis, hypertension, kidney disease, psoriasis, angiogenesis of the eye associated with ocular disorder, infection or surgical intervention, macular degeneration, diabetic retinopathy, and the like.
  • Another aspect of the invention includes methods of using AA targeting compounds of the invention for diagnostic purposes.
  • the AA targeting compounds can be used for the diagnosis of a disease or condition associated with abnormal angiogenesis, including cancer, arthritis, psoriasis, angiogenesis of the eye associated with an ocular disorder, infection or surgical intervention, macular degeneration, diabetic retinopathy, and the like.
  • FIGURES IA and B illustrate embodiments according to Formula I.
  • FIGURE 2 illustrate additional embodiments according to Formula I.
  • FIGURE 3 illustrates embodiments according to Formula III.
  • Aldolase Ab-N- represents a covalent bond to a side of an amino acid in a combining site of an antibody.
  • FIGURE 4 illustrates additional embodiments according to Formula III.
  • FIGURE 5 illustrates additional embodiments according to Formula III.
  • Antibody-N- represents a covalent bond to a side of an amino acid in a combining site of an antibody.
  • FIGURES 6 A and FIGURE 6B illustrate the solid phase synthesis of targeting agent-linker conjugates of the present invention.
  • FIGURE 7 A illustrates the amino acid sequence alignment of the variable domains of m38c2, h38c2, and human germlines.
  • Framework regions (FR) and complementarity determining regions (CDR) are defined according to Kabat et al. Asterisks mark differences between m38c2 and h38c2 or between h38c2 and the human germlines.
  • FIGURE 7B illustrates the amino acid sequence of the light and heavy chains of h38c2 IgGl.
  • FIGURE 8 shows various structures that may serve as linker reactive groups.
  • Structures A-C form reversible covalent bonds with surface accessible reactive nucleophilic groups (e.g., lysine or cysteine side chain) of a combining site of an antibody.
  • R' ls R' 2 , R' 3 , and R 4 in structures A-C represent substituents which include, for example, C, H, N, O, P, S, halogen (F, Cl, Br, I) or a salt thereof.
  • X is N, C, or any other heteroatom.
  • substituents may also include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, or sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, phosphoalkynyl group.
  • R' 2 and R 3 could be cyclic as exemplified in structures B and C while X could be a heteroatom.
  • structure A could form an irreversible covalent bond with a reactive nucleophile if X is N and if K ⁇ and R 3 form part of a cyclic structure.
  • Structures D-G may form nonreversible covalent bonds with reactive nucleophilic groups in a combining site of an antibody.
  • R"i and R" 2 represent C, O, N, halide or leaving groups such as mesyl or tosyl.
  • FIGURE 9 shows various electrophiles that are suitable for reactive modification with a reactive amino acid side chain in a combining site of an antibody and thus may serve as linker reactive groups.
  • the squiggle line indicates the point of attachment to the rest of the linker or targeting agent.
  • X refers to a halogen.
  • FIGURE 10 shows the addition of a nucleophilic ("nu") side chain in an antibody combining site to compounds A-G in FIGURE 8.
  • Antibody- Nu- refers to a covalent bond to an amino acid side chain bearing a nucleophile in a combining site of an antibody.
  • FIGURE 11 shows the addition of a nucleophilic side chain in an antibody combining to compounds A-H in FIGURE 9.
  • Antibody- Nu- refers to a covalent bond to an amino acid side chain bearing a nucleophile in a combining site of an antibody.
  • FIGURE 12 shows a synthesis of:
  • FIGURE 13 shows a synthesis of:
  • FIGURE 14 shows a synthesis of:
  • FIGURE 15 shows a synthesis of:
  • FIGURE 16 shows a synthesis of:
  • FIGURE 17 shows a synthesis of:
  • FIGURE 18 shows a synthesis of:
  • FIGURE 19 shows a synthesis of:
  • FIGURE 20 shows a synthesis of:
  • FIGURE 21 shows syntheses of:
  • FIGURE 22 shows a synthesis of:
  • FIGURE 23 shows a synthesis of:
  • FIGURE 24 shows a synthesis of:
  • FIGURE 25 shows a synthesis of: AA 1 -AA 2 -AA n
  • FIGURE 26 shows a synthesis of:
  • FIGURE 27 shows a synthesis of:
  • FIGURE 28 shows a synthesis of:
  • Every amino-bearing side chain of a targeting agent can be terminated by R 1 or R 2 as defined herein.
  • Every COOH/COO " -bearing side chain of a targeting agent can be terminated by R 3 as defined herein.
  • Sarcosine refers to N-methyl glycine.
  • Norvaline refers to:
  • 3-(4-thiazolyl)-L-Alanine or 3-(4-thiazolyl)-L-Ala refers to:
  • 4-Cyanophenylalanine or 4-Cyano-Phe refers to:
  • D-alloisoleucine or D-alloIle or D-alle refers to:
  • ⁇ -ally-glycine or ⁇ -ally-Gly refers to:
  • Cycloleucine or Cyclo-Leu refers to:
  • 2-furyl-alanine or 2-furyl-Ala refers to:
  • Polypeptide “peptide,” and “protein” are used interchangeably to refer to a polymer of amino acid residues. As used herein, these terms apply to amino acid polymers in which one or more amino acid residues is an artificial chemical analog of a corresponding naturally occurring amino acid. These terms also apply to naturally occurring amino acid polymers.
  • Amino acids can be in the L or D form as long as the binding function of the peptide is maintained.
  • Peptides may be cyclic, having an intramolecular bond between two non-adjacent amino acids within the peptide, e.g., backbone to backbone, side-chain to backbone and side-chain to side-chain cyclization. Cyclic peptides can be prepared by methods well know in the art. See e.g., U.S. Patent No. 6,013,625.
  • N-terminus refers to the free alpha-amino group of an amino acid in a peptide
  • C-terminus refers to the free ⁇ -carboxylic acid terminus of an amino acid in a peptide.
  • a peptide which is N-terminated with a group refers to a peptide bearing a group on the alpha-amino nitrogen of the N- terminal amino acid residue.
  • amino acid which is N-terminated with a group refers to an amino acid bearing a group on the alpha-amino nitrogen.
  • substituted refers to a group as defined below in which one or more bonds to a hydrogen atom contained therein are replaced by a bond to non-hydrogen or non- carbon atoms such as, but not limited to, a halogen atom such as F, Cl, Br, and I; an oxygen atom in groups such as hydroxyl groups, alkoxy groups, aryloxy groups, and ester groups; a sulfur atom in groups such as thiol groups, alkyl and aryl sulfide groups, sulfone groups, sulfonyl groups, and sulfoxide groups; a nitrogen atom in groups such as amines, amides, alkylamines, dialkylamines, arylamines, alkylarylamines, diarylamines, N-oxides, imides, and
  • Substituted alkyl groups and also substituted cycloalkyl groups and others also include groups in which one or more bonds to a carbon(s) or hydrogen(s) atom is replaced by a bond to a heteroatom such as oxygen in carbonyl, carboxyl, and ester groups; nitrogen in groups such as imines, oximes, hydrazones, and nitriles.
  • a group which is "optionally substituted” may be substituted or unsubstituted.
  • optionally substituted alkyl refers to both substituted alkyl groups and unsubstituted alkyl groups.
  • unsubstituted alkyl refers to alkyl groups that do not contain heteroatoms.
  • the phrase includes straight chain alkyl groups such as methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, decyl, undecyl, dodecyl and the like.
  • the phrase also includes branched chain isomers of straight chain alkyl groups, including but not limited to, the following which are provided by way of example: -CH(CHs) 2 , - CH(CH 3 )(CH 2 CH 3 ), -CH(CH 2 CH 3 ) 2 , -C(CH 3 ) 3 , -C(CH 2 CH 3 ) 3 , -CH 2 CH(CH 3 ) 2 , - CH 2 CH(CH 3 )(CH 2 CH 3 ), -CH 2 CH(CH 2 CH 3 ) 2 , -CH 2 C(CH 3 ) 3 , -CH 2 C(CH 2 CH 3 ) 3; - CH(CH 3 )CH(CH 3 )(CH 2 CH 3 ), -CH 2 CH 2 CH(CH 3 ) 2 , -CH 2 CH 2 CH(CH 3 )(CH 2 CH 3 ), - CH 2 CH 2 CH(CH 3 ) 2 , -CH 2 CH 2 C(CH 3 ) 3 ,
  • unsubstituted alkyl groups includes primary alkyl groups, secondary alkyl groups, and tertiary alkyl groups.
  • Unsubstituted alkyl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound.
  • Possible unsubstituted alkyl groups include straight and branched chain alkyl groups having 1 to 20 carbon atoms. Alternatively, such unsubstituted alkyl groups have from 1 to 10 carbon atoms or are lower alkyl groups having from 1 to about 6 carbon atoms.
  • Other unsubstituted alkyl groups include straight and branched chain alkyl groups having from 1 to 3 carbon atoms and include methyl, ethyl, propyl, and -CH(CH 3 ) 2 .
  • substituted alkyl refers to an alkyl group in which one or more bonds to a carbon(s) or hydrogen(s) are replaced by a bond to non-hydrogen and non-carbon atoms such as, but not limited to, a halogen atom in halides such as F, Cl, Br, and I; an oxygen atom in groups such as hydroxyl groups, alkoxy groups, aryloxy groups, and ester groups; a sulfur atom in groups such as thiol groups, alkyl and aryl sulfide groups, sulfone groups, sulfonyl groups, and sulfoxide groups; a nitrogen atom in groups such as amines, amides, alkylamines, dialkylamines, arylamines, alkylarylarnines, diarylamines, N-oxides, imides, and enamines; a silicon atom in groups such as in trialkylsilyl groups, dialkyla
  • Substituted alkyl groups also include groups in which one or more bonds to a carbon(s) or hydrogen(s) atom is replaced by a bond to a heteroatom such as oxygen in carbonyl, carboxyl, and ester groups; nitrogen in groups such as imines, oximes, hydrazones, and nitriles.
  • Substituted alkyl groups include, among others, alkyl groups in which one or more bonds to a carbon or hydrogen atom is/are replaced by one or more bonds to fluorine atoms.
  • One example of a substituted alkyl group is the trifluoromethyl group and other alkyl groups that contain the trifluoromethyl group.
  • alkyl groups include those in which one or more bonds to a carbon or hydrogen atom is replaced by a bond to an oxygen atom such that the substituted alkyl group contains a hydroxyl, alkoxy, aryloxy group, or heterocyclyloxy group.
  • Still other alkyl groups include alkyl groups that have an amine, alkylamine, dialkylamine, arylamine, (alkyl)(aryl)amine, diarylamine, heterocyclylamine, (alkyl)(heterocyclyl)amine, (aryl)(heterocyclyl)amine, or diheterocyclylamine group.
  • unsubstituted alkylene refers to a divalent unsubstituted alkyl group as defined above.
  • methylene, ethylene, and propylene are each examples of unsubstituted alkylenes.
  • substituted alkylene refers to a divalent substituted alkyl group as defined above.
  • Substituted or unsubstituted lower alkylene groups have from 1 to about 6 carbons.
  • unsubstituted cycloalkyl refers to cyclic alkyl groups such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl and such rings substituted with straight and branched chain alkyl groups as defined above.
  • the phrase also includes polycyclic alkyl groups such as, but not limited to, adamantyl norbornyl, and bicyclo[2.2.2]octyl and the like, as well as such rings substituted with straight and branched chain alkyl groups as defined above.
  • the phrase would include methylcylcohexyl groups among others.
  • Unsubstituted cycloalkyl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound. In some embodiments unsubstituted cycloalkyl groups have from 3 to 20 carbon atoms. In other embodiments, such unsubstituted alkyl groups have from 3 to 8 carbon atoms while in others, such groups have from 3 to 7 carbon atoms.
  • substituted cycloalkyl has the same meaning with respect to unsubstituted cycloalkyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
  • the phrase includes, but is not limited to, oxocyclohexyl, chlorocyclohexyl, hydroxycyclopentyl, and chloromethylcyclohexyl groups.
  • unsubstituted aryl refers to aryl groups that do not contain heteroatoms.
  • the phrase includes, but is not limited to, groups such as phenyl, biphenyl, anthracenyl, and naphthenyl by way of example.
  • unsubstituted aryl includes groups containing condensed rings such as naphthalene, it does not include aryl groups that have other groups such as alkyl or halo groups bonded to one of the ring members, as aryl groups such as tolyl are considered herein to be substituted aryl groups as described below.
  • an unsubstituted aryl may be a lower aryl, having from 6 to about 10 carbon atoms.
  • One unsubstituted aryl group is phenyl.
  • Unsubstituted aryl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound, however.
  • substituted aryl group has the same meaning with respect to unsubstituted aryl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
  • a substituted aryl group also includes aryl groups in which one of the aromatic carbons is bonded to one of the non-carbon or non-hydrogen atoms described above and also includes aryl groups in which one or more aromatic carbons of the aryl group is bonded to a substituted and/or unsubstituted alkyl, alkenyl, or alkynyl group as defined herein.
  • unsubstituted alkenyl refers to straight and branched chain and cyclic groups such as those described with respect to unsubstituted alkyl groups as defined above, except that at least one double bond exists between two carbon atoms.
  • Lower unsubstituted alkenyl groups have from 1 to about 6 carbons.
  • substituted alkenyl has the same meaning with respect to unsubstituted alkenyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
  • a substituted alkenyl group includes alkenyl groups in which a non-carbon or non-hydrogen atom is bonded to a carbon double bonded to another carbon and those in which one of the non-carbon or non-hydrogen atoms is bonded to a carbon not involved in a double bond to another carbon.
  • -CH CH-OCH 3
  • unsubstituted alkenylene refers to a divalent unsubstituted alkenyl group as defined above.
  • substituted alkenylene refers to a divalent substituted alkenyl group as defined above.
  • substituted alkynyl has the same meaning with respect to unsubstituted alkynyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
  • a substituted alkynyl group includes alkynyl groups in which a non-carbon or non-hydrogen atom is bonded to a carbon triple bonded to another carbon and those in which a non-carbon or non-hydrogen atom is bonded to a carbon not involved in a triple bond to another carbon.
  • unsubstituted alkynylene refers to a divalent unsubstituted alkynyl group as defined above.
  • a -C ⁇ €- is an example of an unsubstituted alkynylene.
  • substituted alkynylene refers to a divalent substituted alkynyl group as defined above.
  • unsubstituted aralkyl refers to unsubstituted alkyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkyl group is replaced with a bond to an aryl group as defined above.
  • methyl (-CH 3 ) is an unsubstituted alkyl group.
  • a hydrogen atom of the methyl group is replaced by a bond to a phenyl group, such as if the carbon of the methyl were bonded to a carbon of benzene, then the compound is an unsubstituted aralkyl group (i.e., a benzyl group).
  • the phrase includes, but is not limited to, groups such as benzyl, diphenylmethyl, and 1-phenylethyl (-CH(C 6 Hs)(CH 3 )).
  • substituted aralkyl has the same meaning with respect to unsubstituted aralkyl groups that substituted aryl groups have with respect to unsubstituted aryl groups.
  • unsubstituted aralkenyl refers to unsubstituted alkenyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkenyl group is replaced with a bond to an aryl group as defined above.
  • vinyl is an unsubstituted alkenyl group. If a hydrogen atom of the vinyl group is replaced by a bond to a phenyl group, such as if a carbon of the vinyl were bonded to a carbon of benzene, then the compound is an unsubstituted aralkenyl group (i.e., a styryl group).
  • the phrase includes, but is not limited to, groups such as styryl, diphenylvinyl, and 1- ⁇ henylethenyl (- C(C 6 H 5 )(CH 2 )).
  • substituted aralkenyl has the same meaning with respect to unsubstituted aralkenyl groups that substituted aryl groups have with respect to unsubstituted aryl groups.
  • unsubstituted aralkynyl refers to unsubstituted alkynyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkynyl group is replaced with a bond to an aryl group as defined above.
  • acetylene is an unsubstituted alkynyl group. If a hydrogen atom of the acetylene group is replaced by a bond to a phenyl group, such as if a carbon of the acetylene were bonded to a carbon of benzene, then the compound is an unsubstituted aralkynyl group.
  • the phrase includes, but is not limited to, groups such as -C ⁇ €-phenyl and -CH 2 -C ⁇ €-phenyl.
  • substituted aralkynyl has the same meaning with respect to unsubstituted aralkynyl groups that substituted aryl groups have with respect to unsubstituted aryl groups.
  • a substituted aralkynyl group also includes groups in which a carbon or hydrogen bond of the alkynyl part of the group is replaced by a bond to a non-carbon or a non-hydrogen atom. Examples of substituted aralkynyl groups include, but are not limited to, -C ⁇ e-C(Br)(C 6 H 5 ) and -C ⁇ €(2-methylphenyl).
  • unsubstituted heteroalkyl refers to unsubstituted alkyl groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S.
  • Unsubstituted heteroalkyls containing N may have NH or N(unsubstituted alkyl) in the carbon chain.
  • unsubstituted heteroalkyls include alkoxy, alkoxyalkyl, alkoxyalkoxy, thioether, alkylaminoalkyl, aminoalkyloxy, and other such groups.
  • unsubstituted heteroalkyl groups contain 1-5 heteroatoms, and particularly 1-3 heteroatoms.
  • unsubstituted heteroalkyls include, for example, alkoxyalkoxyalkoxy groups such as ethyloxyethyloxyethyloxy.
  • substituted heteroalkyl has the same meaning with respect to unsubstituted heteroalkyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
  • unsubstituted heteroalkylene refers to a divalent unsubstituted heteroalkyl group as defined above.
  • -CH 2 -O-CH 2 - and -CH 2 -NH-CH 2 CH 2 - are both exemplary unsubstituted heteroalkylenes.
  • substituted heteroalkylene refers to a divalent substituted heteroalkyl group As defined above.
  • unsubstituted heteroalkenyl refers to unsubstituted alkene groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S. Unsubstituted heteroalkenyls containing N may have NH or N(unsubstituted alkyl or alkene) in the carbon chain.
  • substituted heteroalkenyl has the same meaning with respect to unsubstituted heteroalkenyl groups that substituted heteroalkyl groups have with respect to unsubstituted heteroalkyl groups.
  • unsubstituted heteroalkenylene refers to a divalent unsubstituted heteroalkenyl group as defined above.
  • substituted heteroalkenylene refers to a divalent substituted heteroalkenyl group as defined above.
  • unsubstituted heteroalkynyl refers to unsubstituted alkynyl groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S.
  • Unsubstituted heteroalkynyls containing N may have NH or N(unsubstituted alkyl, alkene, or alkyne) in the carbon chain.
  • substituted heteroalkynyl has the same meaning with respect to unsubstituted heteroalkynyl groups that substituted heteroalkyl groups have with respect to unsubstituted heteroalkyl groups.
  • unsubstituted heteroalkynylene refers to a divalent unsubstituted heteroalkynyl group as defined above.
  • -CH 2 -O-CH 2 -C ⁇ €- is an example of an unsubstituted heteroalkynylene.
  • substituted heteroalkynylene refers to a divalent substituted heteroalkynyl group as defined above.
  • unsubstituted heterocyclyl refers to both aromatic and nonaromatic ring compounds including monocyclic, bicyclic, and polycyclic ring compounds such as, but not limited to, quinuclidyl, containing 3 or more ring members of which one or more is a heteroatom such as, but not limited to, N, O, and S.
  • unsubstituted heterocyclyl includes condensed heterocyclic rings such as benzimidazolyl, it does not include heterocyclyl groups that have other groups such as alkyl or halo groups bonded to one of the ring members as compounds such as 2-methylbenzimidazolyl are substituted heterocyclyl groups.
  • heterocyclyl groups include, but are not limited to: unsaturated 3 to 8 membered rings containing 1 to 4 nitrogen atoms such as, but not limited to pyrrolyl, pyrrolinyl, imidazolyl, pyrazolyl, pyridyl, dihydropyridyl, pyrimidyl, pyrazinyl, pyridazinyl, triazolyl (e.g., 4H-l,2,4-triazolyl, lH-l,2,3-triazolyl, 2H-l,2,3-triazolyl etc.), tetrazolyl, (e.g., lH-tetrazolyl, 2H tetrazolyl, etc.); saturated 3 to 8 membered rings containing 1 to 4 nitrogen atoms such as, but not limited to, pyrrolidinyl, imidazolidinyl, piperidinyl, piperazinyl; condensed unsaturated hetero
  • Heterocyclyl group also include those described above in which one or more S atoms in the ring is double-bonded to one or two oxygen atoms (sulfoxides and sulfones).
  • heterocyclyl groups include tetrahydrothiophene, tetrahydrothiophene oxide, and tetrahydrothiophene 1,1 -dioxide.
  • heterocyclyl groups contain 5 or 6 ring members.
  • heterocyclyl groups include morpholine, piperazine, piperidine, pyrrolidine, imidazole, pyrazole, 1,2,3-triazole, 1,2,4-triazole, tetrazole, thiomorpholine, thiomorpholine in which the S atom of the thiomorpholine is bonded to one or more O atoms, pyrrole, homopiperazine, oxazolidin-2- one, pyrrolidin-2-one, oxazole, quinuclidine, thiazole, isoxazole, furan, and tetrahydrofuran.
  • substituted heterocyclyl refers to an unsubstituted heterocyclyl group as defined above in which one of the ring members is bonded to a non-hydrogen atom such as described above with respect to substituted alkyl groups and substituted aryl groups. Examples include, but are not limited to, 2-methylbenzimidazolyl, 5-methylbenzimidazolyl, 5-chlorobenzthiazolyl, 1 -methyl piperazinyl, and 2-chloropyridyl.
  • unsubstituted heteroaryl refers to unsubstituted aromatic heterocyclyl groups as defined above.
  • unsubstituted heteroaryl groups include but are not limited to furyl, imidazolyl, oxazolyl, isoxazolyl, pyridinyl, benzimidazolyl, and benzothiazolyl.
  • substituted heteroaryl refers to substituted aromatic heterocyclyl groups as defined above.
  • unsubstituted heterocyclylalkyf ' refers to unsubstituted alkyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkyl group is replaced with a bond to a heterocyclyl group as defined above.
  • methyl (-CH 3 ) is an unsubstituted alkyl group.
  • a hydrogen atom of the methyl group is replaced by a bond to a heterocyclyl group, such as if the carbon of the methyl were bonded to carbon 2 of pyridine (one of the carbons bonded to the N of the pyridine) or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkyl group.
  • substituted heterocyclylalkyl has the same meaning with respect to unsubstituted heterocyclylalkyl groups that substituted aralkyl groups have with respect to unsubstituted aralkyl groups.
  • a substituted heterocyclylalkyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkyl group.
  • unsubstituted heterocyclylalkenyl refers to unsubstituted alkenyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkenyl group is replaced with a bond to a heterocyclyl group as defined above.
  • vinyl is an unsubstituted alkenyl group. If a hydrogen atom of the vinyl group is replaced by a bond to a heterocyclyl group, such as if the carbon of the vinyl were bonded to carbon 2 of pyridine or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkenyl group.
  • substituted heterocyclylalkenyl has the same meaning with respect to unsubstituted heterocyclylalkenyl groups that substituted aralkenyl groups have with respect to unsubstituted aralkenyl groups.
  • a substituted heterocyclylalkenyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkenyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkenyl group.
  • unsubstituted heterocyclylalkynyl refers to unsubstituted alkynyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkynyl group is replaced with a bond to a heterocyclyl group as defined above.
  • acetylene is an unsubstituted alkynyl group. If a hydrogen atom of the acetylene group is replaced by a bond to a heterocyclyl group, such as if the carbon of the acetylene were bonded to carbon 2 of pyridine or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkynyl group.
  • substituted heterocyclylalkynyl has the same meaning with respect to unsubstituted heterocyclylalkynyl groups that substituted aralkynyl groups have with respect to unsubstituted aralkynyl groups.
  • a substituted heterocyclylalkynyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkynyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkynyl group.
  • unsubstituted alkoxy refers to a hydroxyl group (-OH) in which the bond to the hydrogen atom is replaced by a bond to a carbon atom of an otherwise unsubstituted alkyl group as defined above.
  • substituted alkoxy refers to a hydroxyl group (-OH) in which the bond to the hydrogen atom is replaced by a bond to a carbon atom of an otherwise substituted alkyl group as defined above.
  • a "pharmaceutically acceptable salt” includes a salt with an inorganic base, organic base, inorganic acid, organic acid, or basic or acidic amino acid.
  • Salts of inorganic bases include, for example, alkali metals such as sodium or potassium; alkaline earth metals such as calcium and magnesium or aluminum; and ammonia.
  • Salts of organic bases include, for example, trimethylamine, triethylamine, pyridine, picoline, ethanolamine, diethanolamine, and triethanolamine.
  • Salts of inorganic acids include for example, hydrochloric acid, hydroboric acid, nitric acid, sulfuric acid, and phosphoric acid.
  • Salts of organic acids include for example, formic acid, acetic acid, trifluoroacetic acid, fumaric acid, oxalic acid, tartaric acid, maleic acid, citric acid, succinic acid, malic acid, methanesulfonic acid, benzenesulfonic acid, and p-toluenesulfonic acid.
  • Salts of basic amino acids include, for example, arginine, lysine and ornithine.
  • Acidic amino acids include, for example, aspartic acid and glutamic acid.
  • Tautomers refers to isomeric forms of a compound that are in equilibrium with each other.
  • concentrations of the isomeric forms will depend on the environment the compound is found in and may be different depending upon, for example, whether the compound is a solid or is in an organic or aqueous solution.
  • ketones are typically in equilibrium with their enol forms.
  • ketones and their enols are referred to as tautomers of each other.
  • tautomers of each other As readily understood by one skilled in the art, a wide variety of functional groups and other structures may exhibit tautomerism, and all tautomers of compounds of Formulas I, II, and III are within the scope of the present invention.
  • the compounds according to the invention may be solvated, especially hydrated. Hydration may occur during manufacturing of the compounds or compositions comprising the compounds, or the hydration may occur over time due to the hygroscopic nature of the compounds.
  • prodrug denotes a derivative of a pharmaceutically or therapeutically active drug, e.g., esters and amides, wherein the derivative has an enhanced characteristic such as, for example, enhanced delivery and therapeutic value as compared to the drug and can be transformed into the drug by an enzymatic or chemical process.
  • an enhanced characteristic such as, for example, enhanced delivery and therapeutic value as compared to the drug and can be transformed into the drug by an enzymatic or chemical process.
  • the prodrug may be designed to alter the metabolic stability or transport characteristics of a drug, mask side effects or toxicity of a drug, improve the flavor of a drug, or to alter other characteristics or properties of a drug.
  • Compounds of the present invention include enriched or resolved optical isomers at any or all asymmetric atoms as are apparent from the depictions. Both racemic and diastereomeric mixtures, as well as the individual optical isomers can be isolated or synthesized so as to be substantially free of their enantiomeric or diastereomeric partners. All such stereoisomers are within the scope of the invention.
  • carboxy protecting group refers to a carboxylic acid protecting ester group employed to block or protect the carboxylic acid functionality while the reactions involving other functional sites of the compound are carried out.
  • Carboxy protecting groups are disclosed in, for example, Greene, Protective Groups in Organic Synthesis, pp. 152-186, John Wiley & Sons, New York (1981), which is hereby incorporated herein by reference.
  • a carboxy protecting group can be used as a prodrug, whereby the carboxy protecting group can be readily cleaved in vivo by, for example, enzymatic hydrolysis to release the biologically active parent.
  • esters useful as prodrugs for compounds containing carboxyl groups can be found, for example, at pp. 14-21 in Bioreversible Carriers in Drug Design: Theory and Application (E.B. Roche, ed.), Pergamon Press, New York (1987), which is hereby incorporated herein by reference.
  • carboxy protecting groups are C 1 to C 8 alkyl (e.g., methyl, ethyl or tertiary butyl and the like); haloalkyl; alkenyl; cycloalkyl and substituted derivatives thereof such as cyclohexyl, cyclopentyl and the like; cycloalkylalkyl and substituted derivatives thereof such as cyclohexylmethyl, cyclopentylmethyl and the like; arylalkyl, for example, phenethyl or benzyl and substituted derivatives thereof such as alkoxybenzyl or nitrobenzyl groups and the like; arylalkenyl, for example, phenylethenyl and the like; aryl and substituted derivatives thereof, for example, 5-indanyl and the like; dialkylaminoalkyl (e.g., dimethylaminoethyl and the like); alkanoyloxyalkyl groups such as acetoxy
  • N-protecting group or “N-protected” as used herein refers to those groups intended to protect the N-terminus of an amino acid or peptide or to protect an amino group against undesirable reactions during synthetic procedures. Commonly used N- protecting groups are disclosed in, for example, Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York (1981), which is hereby incorporated by reference.
  • N-protecting groups can comprise acyl groups such as formyl, acetyl, propionyl, pivaloyl, t-butylacetyl, 2-chloroacetyl, 2-bromoacetyl, trifluoro acetyl, trichloroacetyl, phthalyl, o-nitrophenoxyacetyl, a-chlorobutyryl, benzoyl, 4-chlorobenzoyl, 4- bromobenzoyl, 4-nitrobenzoyl, and the like; sulfonyl groups such as benzenesulfonyl, p- toluenesulfonyl and the like; carbamate forming groups such as benzyloxycarbonyl, p- chlorobenzyloxycarbonyl, p-methoxybenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2- nitrobenzyloxycarbonyl, p-bro
  • N-protecting groups are formyl, acetyl, benzoyl, pivaloyl, t- butylacetyl, phenylsulfonyl, benzyl, 9-fluorenylrnethyloxycarbonyl (Fmoc), t-butyloxycarbonyl (Boc), and benzyloxycarbonyl (Cbz).
  • halo refers to F, Cl, Br or I.
  • substantially pure means sufficiently homogeneous to appear free of readily detectable impurities as determined by standard methods of analysis, such as thin layer chromatography (TLC), gel electrophoresis, and high performance liquid chromatography (HPLC), used by those of skill in the art to assess such purity, or sufficiently pure such that further purification would not detectably alter the physical and chemical properties, such as enzymatic and biological activities, of the substance.
  • Substantially pure includes compositions in which the AA targeting agent or AA targeting compound forms the major component of the composition, such as constituting about 50%, about 60%, about 70%, about 80%, about 90%, or about 95% or more of the substances in the composition.
  • a substantially chemically pure compound may, however, be a mixture of stereoisomers. In such instances, further purification may increase the specific activity of the compound.
  • AA targeting agents need not always be provided in a specific purified state. Partially purified compositions will have utility in certain embodiments and depending on the desired use. For example, purification methods that may yield a greater total recovery of AA-targeting agent may produce a lower degree of relative purification.
  • biological activity refers to the in vivo activities of a compound, composition, or other mixture, or physiological responses that result upon in vivo administration of a compound, composition or other mixture. Biological activity thus encompasses therapeutic effects, diagnostic effects and pharmaceutical activity of such compounds, compositions, and mixtures.
  • biologically active or “functional” when used as a modifier of invention AA targeting agent containing polypeptides or compositions thereof refers to a polypeptide that exhibits at least one activity that is characteristic of or similar to an AA targeting agent.
  • pharmacokinetics refers to the concentration of an administered compound in the serum over time.
  • Pharmacodynamics refers to the concentration of an administered compound in target and nontarget tissues over time and the effects on the target tissue (e.g., efficacy) and the non-target tissue (e.g., toxicity). Improvements in, for example, pharmacokinetics or pharmacodynamics can be designed for a particular targeting agent or biological agent, such as by using labile linkages or by modifying the chemical nature of any linker (e.g., changing solubility, charge, and the like).
  • an effective amount and “therapeutically effective amount” refer to an amount of an AA targeting agent or compound comprising an AA targeting agent that is useful or able to support an observable change in the level of one or more biological activity characteristic of an AA targeting agent, or a dose sufficient to impart a beneficial effect, e.g., an amelioration of a symptom on the recipient thereof.
  • a therapeutically effective dose level for any particular subject will depend upon a variety of factors including the symptom or disorder being treated, the severity of the symptom or disorder, the activity of the specific compound, the route of administration, the rate of clearance of the compound, the duration of treatment, the drugs used in combination or coincident with the compound, the age, body weight, sex, diet, and general health of the subject, and like, as well as other factors well known in the medical arts and sciences.
  • a therapeutically effective amount can be an amount of AA targeting compound sufficient to produce a measurable inhibition of angiogenesis in the tissue being treated, i.e., an angiogenesis-inhibiting amount. Inhibition of angiogenesis can be measured in situ by immunohistochemistry, or by other methods known to one skilled in the art.
  • the present invention provides various targeting compounds in which AA targeting agents are covalently linked to a combining site of an antibody.
  • the present invention includes methods of altering at least one physical or biological characteristic of an AA targeting agent.
  • the methods include covalently linking an AA targeting agent to a combining site of an antibody, either directly or though a linker.
  • Characteristics of an AA targeting agent that may be modified include, but are not limited to, binding affinity, susceptibility to degradation (e.g., by proteases), pharmacokinetics, pharmacodynamics, immunogenicity, solubility, lipophilicity, hydrophilicity, hydrophobicity, stability (either more or less stable, as well as planned degradation), rigidity, flexibility, modulation of antibody binding, and the like.
  • the biological potency of a particular AA targeting agent may be increased by the addition of the effector function(s) provided by the antibody.
  • an antibody provides effector functions such as complement mediated effector functions.
  • the antibody portion of an AA targeting compound may generally extend the half- life of a smaller sized AA targeting agent in vivo.
  • the invention provides a method for increasing the effective circulating half-life of an AA targeting agent.
  • the present invention provides methods for modulating the binding activity of an antibody by covalently attaching an AA targeting agent to a combining site of the antibody.
  • substantially reduced antibody binding to an antigen may result from the linked AA targeting agent(s) sterically hindering the antigen from contacting the antibody combining site.
  • substantially reduced antigen binding may result if the amino acid side chain of the antibody combining site modified by covalent linkage is important for binding to the antigen.
  • substantially increased antibody binding to an antigen may result when a linked AA targeting agent(s) does not sterically hinder the antigen from contacting the antibody combining site and/or when the amino acid side chain of the antibody combining site modified by covalent linkage is not important for binding to the antigen.
  • the present invention includes methods of modifying a combining site of an antibody to generate binding specificity for the thrombospondin binding cognate.
  • Such methods include covalently linking a reactive amino acid side chain in a combining site of the antibody to a chemical moiety on a linker of an AA targeting agent- linker compound as described herein where an AA targeting agent is based upon a thrombospondin peptide.
  • the chemical moiety of the linker is sufficiently distanced from the AA targeting agent so that an AA targeting agent can bind its cognate when an AA targeting agent-linker compound is covalently linked to an antibody combining site.
  • the antibody will not be considered specific for the target molecule.
  • an antibody prior to covalent linking would have an affinity for the thrombospondin binding cognate of less than about 1 x 10 "5 moles/liter.
  • the modified antibody preferably has an affinity for the target molecule of at least about 1 x lO '6 moles/liter, alternatively, at least about 1 x 10 "7 moles/liter, alternatively, at least 1 x 10 "8 moles/liter, alternatively at least 1 x 10 ⁇ 9 moles/liter, or alternatively, at least about 1 x 10 "10 moles/liter.
  • An AA targeting agent is a peptide selected from the group consisting of:
  • R 1 Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R 3 (SEQ ID NO:4); R I -Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R 3 (SEQ ID NO:5); R ⁇ Sar-Gly-Val-CD-alloIlej-Thr-C ⁇ -Ally-G ⁇ -Ile-Arg-Pro-R 3 (SEQ ID NO:6);
  • R 1 Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO:7); R 2 -Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID N0:8); R 2 -Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO:9); R 2 -Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 10); R 2 -Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R 3 (SEQ ID NO: 11); R 2 -Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Thr
  • R 1 is NH(CH 3 ), N(CH 3 )C(O)CH 3 , N(CH 3 )C(O)CH 2 CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 35 N(CH 3 )C(O)CH(CH 3 )CH 3 , N(CH 3 )C(O)CH 2 CH 2 CH 2 CH 35 N(CH 3 )C(O)CH(CH 3 )CH 2 CH 3 , N(CH 3 )C(O)C 6 H 5 , N(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
  • R 2 is NH 2 , NHC(O)CH 3 , NHC(O)CH 2 CH 3 , NHC(O)CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 3 , NHC(O)CH 2 CH 2 CH 2 CH 3 , NHC(O)CH(CH 3 )CH 2 CH 3 , NHC(O)C 6 H 5 , NH(CH 3 )C(O)CH 2 CH 2 (CH 2 CH 2 O) 1-5 Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
  • R 3 is COOH 5 C(O)NH 2 , C(O)NH(CH 3 ), C(O)NHCH 2 CH 3 , C(O)NHCH 2 CH 2 CH 3 , C(O)NHCH(CH 3 )CH 3 , C(O)NHCH 2 CH 2 CH 2 CH 35 C(O)NHCH(CH 3 )CH 2 CH 35 C(O)NHC 6 H 5 , C(O)NHCH 2 CH 2 OCH 35 C(O)NHOCH 3 , C(O)NHOCH 2 CH 3 , a carboxy protecting group, a lipid fatty acid group or a carbohydrate.
  • An AA targeting compound can be prepared using techniques well known in the art. Typically, synthesis of the peptidyl AA targeting agent is the first step and is carried out as described herein. The targeting agent is then derivatized for linkage to a connecting component (the linker), which is then combined with the antibody.
  • the linker a connecting component
  • One of skill in the art will readily appreciate that the specific synthetic steps used depend upon the exact nature of the three components. Thus, AA targeting agent — linker conjugates and AA targeting compounds described herein can be readily synthesized.
  • AA targeting agent peptides may be synthesized by many techniques that are known to those skilled in the art. For solid phase peptide synthesis, a summary of exemplary techniques may be found in Chemical Approaches to the Synthesis of Peptides and Proteins (Williams et al., eds.), CRC Press, Boca Raton, FL (1997).
  • the desired peptidic AA targeting agent is synthesized sequentially on solid phase according to procedures well known in the art. See, e.g., U.S. Patent Application No. 2003/0045477).
  • the linker may be attached to the peptide in part or in full on the solid phase, or may be added using solution phase techniques after the removal of the peptide from the resin (see FIGURES 6A and 6B).
  • an N-protected amino and carboxylic acid-containing linking moiety may be attached to a resin such as 4-hydroxymethyl- phenoxymethyl-poly(styrene-l% divinylbenzene).
  • the N-protecting group may be removed by the appropriate acid (e.g., TFA for Boc) or base (e.g., piperidine for Fmoc), and the peptide sequence developed in the normal C-terminus to N-terminus fashion (see FIGURE 6A).
  • the peptide sequence may be synthesized first and the linker added to the N-terminal amino acid residue last (see FIGURE 6B).
  • Yet another method entails deprotecting an appropriate side chain during synthesis and derivatizing with a suitably reactive linker. For example, a lysine side chain may be deprotected and reacted with a linker having an active ester.
  • an amino acid derivative with a suitably protected linker moiety already attached to the side chain see FIGURE 6B or, in some cases, the alpha-amino nitrogen, may be added as part of the growing peptide sequence.
  • the targeting agent-linker conjugate is removed from the resin and deprotected, either in succession or in a single operation. Removal of the targeting agent-linker conjugate and deprotection can be accomplished in a single operation by treating the resin-bound peptide-linker conjugate with a cleavage reagent, for example, trifluoroacetic acid containing scavengers such as thianisole, water, or ethanedithiol. After deprotection and release of the targeting agent, further derivatization of the targeting agent peptide may be carried out.
  • a cleavage reagent for example, trifluoroacetic acid containing scavengers such as thianisole, water, or ethanedithiol.
  • the fully deprotected targeting agent-linker conjugate is purified by a sequence of chromatographic steps employing any or all of the following types: ion exchange on a weakly basic resin in the acetate form; hydrophobic adsorption chromatography on underivatized polystyrene-divinylbenzene (e.g., AMBERLITE XAD); silica gel adsorption chromatography; ion exchange chromatography on carboxymethylcellulose; partition chromatography, e.g., on SEPHADEX G-25, LH-20 or countercurrent distribution; high performance liquid chromatography (HPLC), especially reverse-phase HPLC on octyl- or octadecylsilyl-silica bonded phase column packing.
  • HPLC high performance liquid chromatography
  • Antibody as used herein includes polypeptide molecules comprising heavy and/or light chains which have immunoreactive activity.
  • Antibodies include immunoglobulins which are the product of B cells and variants thereof, as well as the T cell receptor (TcR) which is the product of T cells and variants thereof.
  • An immunoglobulin is a protein comprising one or more polypeptides substantially encoded by the immunoglobulin kappa and lambda, alpha, gamma, delta, epsilon and mu constant region genes, as well as myriad immunoglobulin variable region genes. Light chains are classified as either kappa or lambda.
  • Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, which in turn define the immunoglobulin classes, IgG, IgM, IgA, IgD, and IgE, respectively. Subclasses of heavy chains are also known. For example, IgG heavy chains in humans can be any of IgGl, IgG2, IgG3, and IgG4 subclasses.
  • a typical immunoglobulin structural unit is known to comprise a tetramer.
  • Each tetramer is composed of two identical pairs of polypeptide chains, each pair having one "light” (about 25 kD) and one "heavy” chain (about 50-70 kD).
  • the N-terminus of each chain defines a variable region of about 100 to 110 or more amino acids primarily responsible for antigen recognition.
  • the terms variable light chain (V L ) and variable heavy chain (VH) refer to these light and heavy chains respectively.
  • the amino acids of an antibody may be naturally or nonnaturally occurring.
  • Antibodies that contain two combining sites are bivalent in that they have two complementarity or antigen recognition sites.
  • a typical natural bivalent antibody is an IgG.
  • vertebrate antibodies generally comprise two heavy chains and two light chains, heavy chain only antibodies are also known. See Muyldermans et al., TRENDS in Biochem. Sci. 26(4):230-235 (1991). Such antibodies are bivalent and are formed by the pairing of heavy chains.
  • Antibodies may also be multi-valent, as in the case of dimeric forms of IgA and the pentameric IgM molecule.
  • Antibodies also include hybrid antibodies wherein the antibody chains are separately homologous with referenced mammalian antibody chains.
  • One pair of heavy and light chain has a combining site specific to one antigen and the other pair of heavy and light chains has a combining site specific to a different antigen.
  • Such antibodies are referred to as bi-specific because they are able to bind two different antigens at the same time.
  • Antibodies may also be univalent, such as, for example, in the case of Fab or Fab' fragments.
  • Antibodies exist as full length intact antibodies or as a number of well- characterized fragments produced by digestion with various peptidases or chemicals.
  • pepsin digests an antibody below the disulfide linkages in the hinge region to produce F(ab') 2 , a dimer of Fab which itself is a light chain joined to VR-CH 1 by a disulfide bond.
  • F(ab') 2 may be reduced under mild conditions to break the disulfide linkage in the hinge region, thereby converting the F(ab') 2 dimer into a Fab' monomer.
  • the Fab' monomer is essentially a Fab fragment with part of the hinge region (see, e.g., Fundamental Immunology (W. E.
  • antibody fragments are defined in terms of the digestion of an intact antibody, one of skill in the art will appreciate that any of a variety of antibody fragments may be synthesized de novo either chemically or by utilizing recombinant DNA methodology.
  • the term antibody as used herein also includes antibody fragments produced by the modification of whole antibodies, synthesized de novo, or obtained from recombinant DNA methodologies.
  • the smaller size of the antibody fragments allows for rapid clearance and may lead to improved access to solid tumors.
  • Recombinant antibodies may be conventional full length antibodies, hybrid antibodies, heavy chain antibodies, antibody fragments known from proteolytic digestion, antibody fragments such as Fv or single chain Fv (scFv), single domain fragments such as VH or V L , diabodies, domain deleted antibodies, minibodies, and the like.
  • An Fv antibody is about 50 kD in size and comprises the variable regions of the light and heavy chain.
  • the light and heavy chains may be expressed in bacteria where they assemble into an Fv fragment. Alternatively, the two chains can be engineered to form an interchain disulfide bond to give a dsFv.
  • a single chain Fv is a single polypeptide comprising V H and V L sequence domains linked by an intervening linker sequence, such that when the polypeptide folds the resulting tertiary structure mimics the structure of the antigen binding site.
  • scFv single chain Fv
  • One skilled in the art will recognize that depending on the particular expression method and/or antibody molecule desired, appropriate processing of the recombinant antibodies may be performed to obtain a desired reconstituted or reassembled antibody. See, e.g., Vallejo and Rinas, Biomed Central., available at world wide web URL microbialcellfactories.com/content/3/1/11.
  • Single domain antibodies are the smallest functional binding units of antibodies (approximately 13 kD in size), corresponding to the variable regions of either the heavy V H or light V L chains. See U.S. Patent No. 6,696,245, WO04/058821, WO04/003019 and WO03/002609. Single domain antibodies are well expressed in bacteria, yeast, and other lower eukaryotic expression systems. Domain deleted antibodies have a domain, such as CH2, deleted relative to the full length antibody. In many cases such domain deleted antibodies, particularly CH2 deleted antibodies, offer improved clearance relative to their full length counterparts. Diabodies are formed by the association of a first fusion protein comprising two VH domains with a second fusion protein comprising two VL domains.
  • Diabodies like full length antibodies, are bivalent and may be bi-specific.
  • Minibodies are fusion proteins comprising a VH, V L , or scFv linked to CH3, either directly or via an intervening IgG hinge. See T. Olafsen et al., Protein Eng. Des. SeI. 17:315-323 (2004).
  • Minibodies, like domain deleted antibodies, are engineered to preserve the binding specificity of full-length antibodies but with improved clearance due to their smaller molecular weight.
  • the T cell receptor (TcR) is a disulfide linked heterodimer composed of two chains. The two chains are generally disulfide-bonded just outside the T cell plasma membrane in a short extended stretch of amino acids resembling the antibody hinge region.
  • Each TcR chain is composed of one antibody-like variable domain and one constant domain.
  • the full TcR has a molecular mass of about 95 kD, with the individual chains varying in size from 35 to 47 kD.
  • portions of the receptor such as, for example, the variable region, which can be produced as a soluble protein using methods well known in the art. For example, U.S. Patent No. 6,080,840 and A.E. Slanetz and AX. Bothwell, Eur. J. Immunol.
  • soluble T cell receptor prepared by splicing the extracellular domains of a TcR to the glycosyl phosphatidylinositol (GPI) membrane anchor sequences of Thy- 1.
  • GPI glycosyl phosphatidylinositol
  • the soluble TcR also may be prepared by coupling the TcR variable domains to an antibody heavy chain CH 2 or CH 3 domain, essentially as described in U.S. Patent No. 5,216,132 and G.S. Basi et al., J. Immunol.
  • TcR soluble TcR single chains
  • Certain embodiments of the invention use TcR "antibodies" as a soluble antibody.
  • the combining site of the TcR can be identified by reference to CDR regions and other framework residues using the same methods discussed above for antibodies.
  • the combining site refers to the part of an antibody molecule that participates in antigen binding.
  • the antigen binding site is formed by amino acid residues of the N-terminal variable ("V") regions of the heavy (“H") and light (“L”) chains.
  • the antibody variable regions comprise three highly divergent stretches referred to as “hypervariable regions” or “complementarity determining regions” (CDRs), which are interposed between more conserved flanking stretches known as “framework regions” (FRs).
  • the three hypervariable regions of a light chain (LCDRl, LCDR2, and LCDR3) and the three hypervariable regions of a heavy chain (HCDRl, HCDR2, and HCDR3) are disposed relative to each other in three dimensional space to form an antigen binding surface or pocket, hi heavy-chain antibodies or VH domains, the antigen binding site is formed by the three hypervariable regions of the heavy chains, hi VL domains, the antigen binding site is formed by the three hypervariable regions of the light chain.
  • the identity of the amino acid residues in a particular antibody that make up a combining site can be determined using methods well known in the art. For example, antibody CDRs may be identified as the hypervariable regions originally defined by Kabat et al. See E.
  • Residue after is always a Trp, typically followed by Tyr-Gln, but also followed by Leu-Gin, Phe-Gln, or Tyr-Leu. Length is 10 to 17 residues.
  • Residue after is a Trp typically followed by VaI, but also followed by He or Ala.
  • Length is 10 to 12 residues under AbM definition; Chothia definition excludes the last 4 residues.
  • the identity of the amino acid residues in a particular antibody that are outside the CDRs, but nonetheless make up part of the combining site by having a side chain that is part of the lining of the combining site (i.e., that is available to linkage through the combining site), can be determined using methods well known in the art, such as molecular modeling and X-ray crystallography. See, e.g., L. Riechma ⁇ et al., Nature 332:323-327 (1988).
  • antibodies that can be used in preparing antibody-based AA targeting compounds require a reactive side chain in the antibody combining site.
  • a reactive side chain may be present naturally or may be placed in an antibody by mutation.
  • the reactive residue of the antibody combining site may be associated with the antibody, such as when the residue is encoded by nucleic acid present in the lymphoid cell first identified to make the antibody.
  • the amino acid residue may arise by purposely mutating the DNA so as to encode the particular residue (see, e.g., WO 01/22922 to Meares et al.).
  • the reactive residue may be a non-natural residue arising, for example, by biosynthetic incorporation using a unique codon, tRNA, and aminoacyl-tRNA as discussed herein.
  • the amino acid residue or its reactive functional groups may be attached to an amino acid residue in the antibody combining site.
  • covalent linkage with the antibody occurring "through an amino acid residue in a combining site of an antibody” as used herein means that linkage can be directly to an amino acid residue of an antibody combining site or through a chemical moiety that is linked to a side chain of an amino acid residue of an antibody combining site.
  • Catalytic antibodies are one source of antibodies with combining sites that comprise one or more reactive amino acid side chains.
  • Such antibodies include aldolase antibodies, beta lactamase antibodies, esterase antibodies, amidase antibodies, and the like.
  • One embodiment comprises an aldolase antibody such as the mouse monoclonal antibody mAb 38C2 or mAb 33F12, as well as suitably humanized and chimeric versions of such antibodies.
  • Mouse mAb 38C2 has a reactive lysine near to but outside HCDR3, and is the prototype of a new class of catalytic antibodies that were generated by reactive immunization and mechanistically mimic natural aldolase enzymes. See CF. Barbas 3 ⁇ d et al., Science 278:2085-2092 (1997)).
  • aldolase catalytic antibodies that may be used include the antibodies produced by the hybridoma 85A2, having ATCC accession number PTA-1015; hybridoma 85C7, having ATCC accession number PTA-1014; hybridoma 92F9, having ATCC accession number PTA-1017; hybridoma 93F3, having ATCC accession number PTA-823; hybridoma 84G3, having ATCC accession number PTA-824; hybridoma 84Gl 1, having ATCC accession number PTA-1018; hybridoma 84H9, having ATCC accession number PTA- 1019; hybridoma 85H6, having ATCC accession number PTA-825; hybridoma 90G8, having ATCC accession number PTA-1016.
  • AA targeting compounds may also be formed by linking an AA targeting agent to a reactive cysteine, such as those found in the combining sites of thioesterase and esterase catalytic antibodies.
  • a reactive cysteine such as those found in the combining sites of thioesterase and esterase catalytic antibodies.
  • Suitable thioesterase catalytic antibodies are described by K.D. Janda et al., Proc. Natl. Acad. Sci. U.S.A. 91:2532-2536 (1994).
  • Suitable esterase antibodies are described by P. Wirsching et al., Science 270:1775-1782 (1995).
  • Reactive amino acid- containing antibodies may be prepared by means well known in the art, including mutating an antibody combining site residue to encode for the reactive amino acid or chemically derivatizing an amino acid side chain in an antibody combining site with a linker that contains the reactive group.
  • Antibodies suitable for use herein may be obtained by conventional immunization, reactive immunization in vivo, or by reactive selection in vitro, such as with phage display. Antibodies may also be obtained by hybridoma or cell fusion methods or in vitro host cells expression system. Antibodies may be produced in humans or in other animal species. Antibodies from one species of animal may be modified to reflect another species of animal. For example, human chimeric antibodies are those in which at least one region of the antibody is from a human immunoglobulin.
  • a human chimeric antibody is typically understood to have variable region amino acid sequences homologous to a non-human animal, e.g., a rodent, with the constant region having amino acid sequence homologous to a human immunoglobulin
  • a humanized antibody uses CDR sequences from a non- human antibody with most or all of the variable framework region sequence and all the constant region sequence from a human immunoglobulin.
  • Chimeric and humanized antibodies may be prepared by methods well known in the art including CDR grafting approaches (see, e.g., N. Hardman et al., Int. J. Cancer 44:424-433 (1989); C. Queen et al., Proc. Natl. Acad. Sci. U.S.A.
  • a humanized antibody has one or more amino acid residues introduced into it from a source which is non-human.
  • non-human amino acid residues are often referred to as "import” residues, which are typically taken from an "import” variable domain.
  • Humanization can be essentially performed following the methods of Winter and colleagues (see, e.g., P.T. Jones et al., Nature 321:522-525 (1986); L. Riechmann et al., Nature 332:323- 327 (1988); M. Verhoeyen et al., Science 239:1534-1536 (1988)) by substituting hypervariable region sequences for the corresponding sequences of a human antibody.
  • such "humanized” antibodies are chimeric antibodies wherein substantially less than an intact human variable domain has been substituted by the corresponding sequence from a non-human species.
  • humanized antibodies are typically human antibodies in which some hypervariable region residues and possibly some framework (FR) residues are substituted by residues from analogous sites in rodent antibodies.
  • FR framework
  • human variable domains both light and heavy
  • HAMA human anti-mouse antibody
  • the human variable domain utilized for humanization is selected from a library of known domains based on a high degree of homology with the rodent variable region of interest (MJ. Sims et al., J. Immunol., 151:2296-2308 (1993); M. Chothia and A.M. Lesk, J. MoI. Biol. 196:901-917 (1987)).
  • Another method uses a framework region derived from the consensus sequence of all human antibodies of a particular subgroup of light or heavy chains.
  • the same framework may be used for several different humanized antibodies (see, e.g., P. Carter et al., Proc. Natl. Acad. Sci. U.S.A. 89:4285-4289 (1992); L.G. Presta et al., J. Immunol., 151:2623-2632 (1993)).
  • humanized antibodies are prepared by analysis of the parental sequences and various conceptual humanized products using three-dimensional models of the parental and humanized sequences. Three-dimensional immunoglobulin models are commonly available and are familiar to those skilled in the art. Computer programs are available which illustrate and display probable three-dimensional conformational structures of selected candidate immunoglobulin sequences. Inspection of these displays permits analysis of the likely role of the residues in the functioning of the candidate immunoglobulin sequence with respect to linking to the Z group. In this way, FR residues can be selected and combined from the recipient and import sequences so that the desired antibody characteristic, such as increased affinity for the target antigen(s), is achieved.
  • humanized murine aldolase antibodies are contemplated.
  • One embodiment uses the humanized aldolase catalytic antibody h38c2 IgGl or h38c2 Fab with human constant domains C ⁇ and C ⁇ l l.
  • C. Rader et al., J. MoI. Bio. 332:889-899 (2003) discloses the gene sequences and vectors that may be used to produce h38c2 Fab and h38c2 IgGl.
  • FIGURE 7 A illustrates a sequence alignment between the variable light and heavy chains in m38c2 (SEQ ID NOs: 32 and 33, respectively), h38c2 (SEQ ID NOs: 34 and 35, respectively), and human germlines.
  • h38c2 may utilize IgGl, IgG2, IgG3, or IgG4 constant domains, including any of the allotypes thereof.
  • FIGURE 7B illustrates one embodiment of h38c2 IgGl using the Glm(f) allotype.
  • the light and heavy chain amino acid sequences of this h38c2 IgGl are set forth in SEQ ID NOs:40 and 41, respectively.
  • Z binds to the side chain of the lysine residue at position 99 of SEQ ID NO:41. This residue is denoted by bold print in FIGURE 7B.
  • Another embodiment uses a chimeric antibody comprising the variable domains (V L and V H ) of h38c2 and the constant domains from an IgGl, IgG2, IgG3, or IgG4.
  • h38c2 F(ab') 2 may be produced by the proteolytic digestion of h38c2 IgGl .
  • Another embodiment uses an h38c2 scFv comprising the V L and VH domains from h38c2 which are optionally connected by the intervening linker (Gly 4 Ser) 3 .
  • human antibodies can be generated.
  • transgenic animals e.g., mice
  • transgenic animals e.g., mice
  • immunization or reactive immunization in the case of catalytic antibodies
  • J # antibody heavy-chain joining region
  • phage display technology can be used to produce human antibodies and antibody fragments in vitro using immunoglobulin variable (V) domain gene repertoires from unimmunized donors.
  • antibody V domain genes are cloned in-frame into either a major or minor coat protein gene of a filamentous bacteriophage, such as Ml 3 or fd, and displayed as functional antibody fragments on the surface of the phage particle.
  • a filamentous bacteriophage such as Ml 3 or fd
  • the filamentous particle contains a single-stranded DNA copy of the phage genome
  • selections based on the functional properties of the antibody also result in selection of the gene encoding the antibody exhibiting those properties.
  • the phage mimics some of the properties of the B-cell.
  • Phage display can be performed in a variety of formats, and is reviewed in, e.g., K.S. Johnson and DJ. Chiswell, Curr. Opin. Struct. Biol. 3:564-571 (1993).
  • V-gene segments can be used for phage display.
  • T. Clackson et al., Nature, 352:624-628 (1991) isolated a diverse array of anti- oxazolone antibodies from a small random combinatorial library of V genes derived from the spleens of immunized mice.
  • a repertoire of V genes from unimmunized human donors can be constructed and antibodies to a diverse array of antigens (including self-antigens) can be isolated essentially following the techniques described by J.D. Marks et al., J. MoI. Biol. 222:581-597 (1991) or A.D. Griffiths et al., EMBO J. 12:725-734 (1993). See also U.S. Pat. Nos. 5,565,332 and 5,573,905; and L.S. Jespers et al., Biotechnology 12:899-903 (1994).
  • human antibodies may also be generated by in vitro activated B cells. See, e.g., U.S. Patent Nos. 5,567,610 and 5,229,275; and C.A.K. Borrebaeck et al., Proc. Natl. Acad. Sci. U.S.A. 85:3995-3999 (1988).
  • Amino acid sequence modification(s) of the antibodies described herein are contemplated. For example, it may be desirable to improve the binding affinity and/or other biological properties of the antibody. Amino acid sequence variants of an antibody are prepared by introducing appropriate nucleotide changes into the antibody nucleic acid, or by peptide synthesis.
  • Such modifications include, for example, deletions from, insertions into, and/or substitutions of residues within the amino acid sequences of the antibody. Any combination of deletion, insertion, and substitution is made to arrive at the final construct, provided that the final construct possesses the desired characteristics.
  • the amino acid changes also may alter post-translational processes of the antibody, such as changing the number or position of glycosylation sites.
  • a useful method for identification of certain residues or regions of an antibody that are preferred locations for mutagenesis is called "alanine scanning mutagenesis," as described in B.C. Cunningham and J.A. Wells, Science 244:1081-1085 (1989).
  • a residue or group of target residues are identified (e.g., charged residues such as Arg, Asp, His, Lys, and GIu) and replaced by a neutral or negatively charged amino acid (most preferably Ala or Polyalanine) to affect the interaction of the amino acids with the Z group of the linker.
  • Those amino acid locations demonstrating functional sensitivity to the substitutions are then refined by introducing further or other variants at, or for, the sites of substitution.
  • the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined.
  • alanine scanning or random mutagenesis is conducted at the target codon or region and the expressed antibody variants are screened for the ability to form a covalent bond with Z.
  • Amino acid sequence insertions include amino- and/or carboxyl-terminal fusions ranging in length from one residue to polypeptides containing a hundred or more residues, as well as intrasequence insertions of single or multiple amino acid residues.
  • terminal insertions include an antibody with an N-terminal methionyl residue or the antibody fused to a cytotoxic polypeptide.
  • Other insertional variants of an antibody molecule include the fusion to the N- or C-terminus of an anti-antibody to an enzyme or a polypeptide which increases the serum half-life of the antibody.
  • Another type of variant is an amino acid substitution variant. These variants have at least one amino acid residue in an antibody molecule replaced by a different residue.
  • substitutional mutagenesis sites of greatest interest for substitutional mutagenesis include the hypervariable regions, but FR alterations are also contemplated. Conservative substitutions are shown in Table 3 below under the heading of "preferred substitutions.” If such substitutions result in a change in biological activity, then more substantial changes, denominated "exemplary substitutions" as further described below in reference to amino acid classes, may be introduced and the products screened.
  • Substantial modifications in the biological properties of the antibody are accomplished by selecting substitutions that differ significantly in their effect on maintaining (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation, (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain.
  • Naturally occurring residues are divided into groups based on common side-chain properties:
  • Non-conservative substitutions will entail exchanging a member of one of these classes for a member of another class.
  • cysteine residues not involved in maintaining the proper conformation of the antibody may be substituted, generally with serine, to improve the oxidative stability of the molecule and prevent aberrant crosslinking.
  • cysteine bond(s) may be added to the antibody to improve its stability (particularly where the antibody is an antibody fragment such as an Fv fragment).
  • substitutional variant involves substituting one or more hypervariable region residues of a parent antibody (e.g., a humanized or human antibody).
  • a parent antibody e.g., a humanized or human antibody
  • the resulting variant(s) selected for further development will have improved biological properties relative to the parent antibody from which they are generated.
  • a convenient way for generating such substitutional variants involves affinity maturation using phage display. Briefly, several hypervariable region sites (e.g., 6-7 sites) are mutated to generate all possible amino substitutions at each site.
  • the antibody variants thus generated are displayed in a monovalent fashion from filamentous phage particles as fusions to the gene III product of Ml 3 packaged within each particle.
  • the phage-displayed variants are then screened for their biological activity (e.g., binding affinity) as herein disclosed.
  • alanine scanning mutagenesis can be performed to identify hypervariable region residues contributing significantly to antigen binding.
  • Another type of amino acid variant of the antibody alters the original glycosylation pattern of the antibody by deleting one or more carbohydrate moieties found in the antibody and/or adding one or more glycosylation sites that are not present in the antibody.
  • N-linked refers to the attachment of the carbohydrate moiety to the side chain of an asparagine residue.
  • the tripeptide sequences Asn-X"-Ser and Asn-X"-Thr, where X" is any amino acid except proline, are generally the recognition sequences for enzymatic attachment of the carbohydrate moiety to the asparagine side chain.
  • X is any amino acid except proline
  • O-linked glycosylation refers to the attachment of one of the sugars N-acetylgalactosamine, galactose, or xylose to a hydroxyamino acid, most commonly serine or threonine, although 5-hydroxyproline or 5- hydroxylysine may also be used.
  • Addition of glycosylation sites to the antibody is conveniently accomplished by altering the amino acid sequence such that it contains one or more of the above-described tripeptide sequences (for N-linked glycosylation sites).
  • the alteration may also be made by the addition of or substitution by one or more serine or threonine residues to the sequence of the original antibody (for O-linked glycosylation sites).
  • an antibody with respect to effector function, for example to enhance antigen-dependent cell-mediated cytotoxicity (ADCC) and/or complement dependent cytotoxicity (CDC) of the antibody. This may be achieved by introducing one or more amino acid substitutions in an Fc region of the antibody.
  • an antibody can be engineered which has dual Fc regions and may thereby have enhanced complement lysis and ADCC capabilities. See G.T. Stevenson et al., Anticancer Drug Des. 3:219-230 (1989).
  • a salvage receptor binding epitope into the antibody (especially an antibody fragment) as described in U.S. Pat. No. 5,739,277, for example.
  • the term "salvage receptor binding epitope” refers to an epitope of the Fc region of an IgG molecule (e.g., IgG 1 , IgG 2 , IgG 3 , or IgG 4 ) that is responsible for increasing the in vivo serum half-life of the IgG molecule.
  • Fab'-SH fragments can be directly recovered from E. coli and chemically coupled to form F(ab') 2 fragments (P. Carter et al., Biotechnology 10:163-167 (1992)).
  • F(ab') 2 fragments can be isolated directly from recombinant host cell culture.
  • a variety of expression vector/host systems may be utilized to express antibodies. These systems include but are not limited to microorganisms such as bacteria transformed with recombinant bacteriophage, plasmid or cosmid DNA expression vectors; yeast transformed with yeast expression vectors; insect cell systems infected with virus expression vectors (e.g., baculovirus); plant cell systems transfected with virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with bacterial expression vectors (e.g., Ti or pBR322 plasmid); or animal cell systems.
  • microorganisms such as bacteria transformed with recombinant bacteriophage, plasmid or cosmid DNA expression vectors; yeast transformed with yeast expression vectors; insect cell systems infected with virus expression vectors (e.g., baculovirus); plant cell systems transfected with virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with bacterial expression
  • Mammalian cells that are useful in recombinant antibody expression include but are not limited to VERO cells, HeLa cells, Chinese hamster ovary (CHO) cell lines, COS cells (such as COS-7), W138, BHK, HepG2, 3T3, RIN, MDCK, A549, PC12, K562 and 293 cells, as well as hybridoma cell lines as described herein. Mammalian cells are preferred for preparation of those antibodies that are typically glycosylated and require proper refolding for activity. Preferred mammalian cells include CHO cells, hybridoma cells, and myeloid cells.
  • expression vector refers to a plasmid, phage, virus or vector, for expressing a polypeptide from a DNA (RNA) sequence.
  • An expression vector may comprise a transcriptional unit comprising (1) one or more regulatory sequences controlling gene expression, for example, promoters or enhancers, (2) one or more sequences that encode one or more polypeptides, and (3) appropriate transcription initiation and termination sequences.
  • Expression vectors intended for use in yeast or eukaryotic expression systems preferably include a leader sequence enabling extracellular secretion of translated protein by a host cell.
  • an antibody polypeptide(s) is expressed without a leader or transport sequence, it may include an amino terminal methionine residue. This residue may or may not be subsequently cleaved from the expressed recombinant protein to provide a final antibody product.
  • Antibodies may be expressed in prokaryotic systems such as E. coli.
  • the DNA sequence encoding the specific binding agent peptide can be amplified by PCR and cloned into an appropriate vector, such as for example pGEX-3x (Pharmacia).
  • the pGEX vector is designed to produce a fusion protein comprising glutathione-S-transferase (GST), encoded by the vector, and a peptide encoded by a DNA fragment inserted into the vector's cloning site.
  • the primers for PCR can be generated to include for example, an appropriate cleavage site.
  • the pGEX-3x antibody peptide construct is transformed into E. coli XL-I Blue cells (Stratagene, La Jo 11a Calif), and individual transformants are isolated and grown.
  • the expressed peptide fusion protein may then be cleaved from the GST portion of the fusion protein.
  • Antibodies, specifically antibody fragments, made in bacterial cells may be produced as an insoluble inclusion body in the bacteria.
  • Such antibodies can be purified as follows. Host cells can be sacrificed by centrifugation; washed in 0.15 M NaCl, 10 mM Tris, pH 8, 1 mM EDTA; and treated with 0.1 mg/ml lysozyme (Sigma, St. Louis, Mo.) for 15 minutes at room temperature. The lysate can be cleared by sonication, and cell debris can be pelleted by centrifugation for 10 minutes at 12,000 x g.
  • the antibody containing pellet can be resuspended in 50 mM Tris, pH 8, and 10 mM EDTA, layered over 50% glycerol, and centrifuged for 30 min. at 6000 x g.
  • the pellet can be resuspended in standard phosphate buffered saline solution (PBS) free of Mg and Ca ions.
  • PBS phosphate buffered saline solution
  • the antibody can be further purified by fractionating the resuspended pellet in a denaturing SDS polyacrylamide gel (Sambrook et al., supra). The gel can be soaked in 0.4 M KCl to visualize the protein, which can be excised and electroeluted in gel-running buffer lacking SDS.
  • Mammalian host systems for the expression of antibodies are well known to those of skill in the art. Host cell strains can be chosen for a particular ability to process the expressed protein or produce certain post-translation modifications that will be useful in providing protein activity. Such modifications of the polypeptide include, but are not limited to, acetylation, carboxylation, glycosylation, phosphorylation, lipidation and acylation. Different host cells such as CHO, HeLa, MDCK, 293, Wl 38, as well as hybridoma cell lines, and the like have specific cellular machinery and characteristic mechanisms for such post- translational activities and can be chosen to ensure the correct modification and processing of the introduced, foreign protein.
  • a number of selection systems can be used to recover the cells that have been transformed for recombinant antibody production.
  • selection systems include, but are not limited to, HSV thymidine kinase, hypoxanthine-guanme phosphoribosyltransferase and adenine phosphoribosyltransferase genes, in tk-, hgprt- or aprt-cells, respectively.
  • antimetabolite resistance can be used as the basis of selection for DHFR which confers resistance to methotrexate; gpt which confers resistance to mycophenolic acid; neo which confers resistance to the aminoglycoside G418 and confers resistance to chlorsulfuron; and hygro which that confers resistance to hygromycin.
  • Additional selectable genes that may be useful include trpB, which allows cells to utilize indole in place of tryptophan, or hisD, which allows cells to utilize histinol in place of histidine.
  • Markers that give a visual indication for identification of transformants include anthocyanins, beta.-glucuronidase and its substrate, GUS, and luciferase and its substrate, luciferin.
  • antibodies produced using procedures described above may need to be "refolded” and oxidized into a proper tertiary structure and allowed to generate disulfide linkages in order to be biologically active.
  • Refolding can be accomplished using a number of procedures well known in the art. Such methods include, for example, exposing the solubilized polypeptide agent to a pH usually above 7 in the presence of a chaotropic agent.
  • a chaotrope is similar to the choices used for inclusion body solubilization. However a chaotrope is typically used at a lower concentration.
  • An exemplary chaotropic agent is guanidine.
  • the refolding/oxidation solution will also contain a reducing agent plus its oxidized form in a specific ratio to generate a particular redox potential which allows for disulfide shuffling to occur for the formation of cysteine bridges.
  • Some commonly used redox couples include cysteine/cystamine, glutathione/dithiobisGSH, cupric chloride, dithiothreitol DTT/dithiane DTT, and 2-mercaptoethanol (bME)/dithio-bME.
  • a co-solvent may be used to increase the efficiency of the refolding.
  • cosolvents include glycerol, polyethylene glycol of various molecular weights, and arginine.
  • An AA targeting agent may be covalently linked to a combining site in an antibody either directly or via a linker.
  • An appropriate linker can be chosen to provide sufficient distance between the targeting agent and the antibody.
  • the general design of an embodiment of a linker for use in preparing AA targeting compounds is represented by the formula: -X-Y-Z, wherein X is a connecting chain, Y is a recognition group and Z is a reactive group.
  • the linker may be linear or branched, and optionally includes one or more carbocyclic or heterocyclic groups.
  • Linker length may be viewed in terms of the number of linear atoms, with cyclic moieties such as aromatic rings and the like to be counted by taking the shortest route around the ring, hi some embodiments, the linker has a linear stretch of between 5-15 atoms, in other embodiments 15-30 atoms, in still other embodiments 30-50 atoms, in still other embodiments 50-100 atoms, and in still other embodiments 100-200 atoms.
  • linker considerations include the effect on physical or pharmacokinetic properties of the resulting AA targeting compound or AA targeting agent-linker, such as solubility, lipophilicity, hydrophilicity, hydrophobicity, stability (more or less stable as well as planned degradation), rigidity, flexibility, immunogenicity, modulation of antibody binding, the ability to be incorporated into a micelle or liposome, and the like.
  • the connecting chain X of the linker includes any atom from the group C, H, N, O, P, S, halogen (F, Cl, Br, I), or a salt thereof.
  • X also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group.
  • X may include one or more ring structures, hi some embodiments, the linker is a repeating polymer such as polyethylene glycol comprising 2-100 units.
  • the recognition group Y of the linker is optional, and if present is located between the reactive group and the connecting chain. In some embodiments, Y is located from 1-20 atoms from Z. Although not wishing to be bound by any theory, it is believed that the recognition group acts to properly position the reactive group into the antibody combining site so that it may react with a reactive amino acid side chain. Exemplary recognition groups include carbocyclic and heterocyclic rings, preferably having five or six atoms. However, larger ring structures also may be used. In some embodiments, an AA targeting agent is linked directly to Y without the use of an intervening linker.
  • Z is capable of forming a covalent bond with a reactive side chain in an antibody combining site.
  • Other groups may include a lactone, an anhydride, an alpha-haloacetamide, an imine, a hydrazide, or an epoxide.
  • acyl beta-lactam simple diketone
  • succinimide active ester maleimide
  • the linker reactive group or similar such reactive group is chosen for use with a reactive residue in a particular combining site.
  • a chemical moiety for modification by an aldolase antibody may be a ketone, diketone, beta lactam, active ester haloketone, lactone, anhydride, maleimide, alpha-haloacetamide, cyclohexyl diketone, epoxide, aldehyde, amidine, guanidine, imine, eneamine, phosphate, phosphonate, epoxide, aziridine, thioepoxide, masked or protected diketone (ketal for example), lactam, haloketone, aldehyde, and the like.
  • a linker reactive group chemical moiety suitable for covalent modification by a reactive sulfhydryl group in an antibody may be a disulfide, aryl halide, maleimide, alpha- haloacetamide, isocyanate, epoxide, thioester, active ester, amidine, guanidine, imine, eneamine, phosphate, phosphonate, epoxide, aziridine, thioepoxide, masked or protected diketone (ketal for example), lactam, haloketone, aldehyde, and the like.
  • reactive amino acid side chains in antibody combining sites may possess an electrophilic group that reacts with a nucleophilic group on an AA targeting agent or its linker, whereas in other embodiments a reactive nucleophilic group in an amino acid side chain reacts with an electrophilic group in an AA targeting agent or linker.
  • An AA targeting compound may be prepared by several approaches.
  • an AA targeting agent-linker compound is synthesized with a linker that includes one or more reactive groups designed for covalent reaction with a side chain of an amino acid in a combining site of an antibody.
  • the targeting agent-linker compound and antibody are combined under conditions where the linker reactive group forms a covalent bond with the amino acid side chain.
  • linking can be achieved by synthesizing an antibody-linker compound comprising an antibody and a linker wherein the linker includes one or more reactive groups designed for covalent reaction with an appropriate chemical moiety of an AA targeting agent.
  • An AA targeting agent may need to be modified to provide the appropriate moiety for reaction with the linker reactive group.
  • the antibody-linker and AA targeting agent are combined under conditions where the linker reactive group covalently links to the targeting and/or biological agent.
  • a further approach for forming an antibody- AA targeting compound uses a dual linker design.
  • an AA targeting agent-linker compound is synthesized which comprises an AA targeting agent and a linker with a reactive group.
  • An antibody-linker compound is synthesized which comprises an antibody and a linker with a chemical group susceptible to reactivity with the reactive group of the AA targeting agent- linker of the first step. These two linker containing compounds are then combined under conditions whereby the linkers covalently link, forming the antibody- AA-targeting compound.
  • Exemplary functional groups that can be involved in the linkage include, for example, esters, amides, ethers, phosphates, amino, keto, amidine, guanidine, imines, eneamines, phosphates, phosphonates, epoxides, aziridines, thioepoxides, masked or protected diketones (ketals for example), lactams, haloketones, aldehydes, thiocarbamate, thioamide, thioester, sulfide, disulfide, phosphoramide, sulfonamide, urea, thioruea, carbamate, carbonate, hydroxamide, and the like.
  • the linker includes any atom from the group C, H, N, O 5 P, S, halogen (F, Cl, Br, I), or a salt thereof.
  • the linker also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group.
  • the linker also may include one or more ring structures.
  • a "ring structure” includes saturated, unsaturated, and aromatic carbocyclic rings and saturated, unsaturated, and aromatic heterocyclic rings.
  • the ring structures may be mono-, bi-, or polycyclic, and include fused or unfused rings.
  • the ring structures are optionally substituted with functional groups well known in the art, including but not limited to halogen, oxo, -OH, -CHO, -COOH, -NO 2 , -CN, -NH 2 , -C(O)NH 2 , C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group. Combinations of the above groups and rings may also be present in the linkers of AA targeting compounds.
  • One aspect of the invention is an AA targeting agent-linker conjugate having
  • [AA targeting agent] is an AA targeting agent peptide
  • the linker moiety L in compounds of Formula I may be attached to the amino terminus, carboxy terminus or any amino acid side chain of an AA targeting agent.
  • L is linked to the carboxy terminus of an AA targeting agent, hi certain other embodiments, L is linked to the amino terminus of an AA targeting agent.
  • L is linked to either a nucleophilic or electrophilic side chain.
  • L should possess a nucleophilic group susceptible to covalent reaction with the electrophilic side chain.
  • Exemplary electrophilic side chains are Asp and GIu.
  • Exemplary nucleophilic side chains are Cys, Lys, Ser, Thr, and Tyr.
  • L should comprise an electrophilic group susceptible to covalent reaction with the nucleophilic side chain.
  • a nucleophilic amino acid is added to either the carboxy terminus or the amino terminus of an AA targeting agent and the linker L is covalently attached to the side chain of this additional amino acid.
  • Lys is added to the amino terminus of an AA targeting agent. In certain other embodiments, Lys is added to the carboxy terminus of an AA targeting agent.
  • exemplary compounds of Formula I formed by linking to either i) the side chains of D, E, C, K, S, T, and Y or ii) the amino or carboxy termini include:
  • exemplary compounds of Formula I formed by linking to either i) the side chains of D, E, C, K, S, T 5 and Y or ii) the amino or carboxy termini include:
  • L is a linker moiety having the formula -X-Y-Z, wherein:
  • X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
  • Y is an optionally present recognition group comprising at least a ring structure
  • Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody.
  • X is:
  • P and P' are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate), poly(N
  • R 21 , R 22 , and R 23 are each independently a covalent bond, -O-, -S-, -NR b -, substituted or unsubstituted straight or branched chain C 1-S0 alkylene, or substituted or unsubstituted straight or branched chain C 1 . 50 heteroalkylene;
  • R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0-6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl;
  • R 21 , R 22 , and R 23 are selected such that the backbone length of X remains about 200 atoms or less.
  • R 22 is — (CH 2 ) v - ⁇ -(CH 2 )u-C(O)-(CH 2 ) v -, -(CH 2 )U-C(O)-O-(CH 2 )V-, -(CH 2 ) u -C(S)-NR b -(CH 2 ) v -, -(CH 2 ) u -C(O)-NR b -(CH 2 ) v -, -(CH 2 ) u -NR b -(CH 2 ) v -, -(CH 2 ) U -O-(CH 2 ) V -, -(CH 2 )u-S(O) 0-2 -(CH 2 ) v -, -(CH 2 ) u -S(O) 0-2 -NR b -(CH 2 ) v - or -(CH 2
  • R 22 is -(CH 2 ) V -, -(CH 2 )u-C(O)-(CH 2 )v-, -(CH 2 ) U -C(O)-O-(CH 2 ) V -, -(CH 2 ) u -C(O)-NR b -(CH 2 ) v - or -(CH 2 ) u -NR b -(CH 2 ) v .
  • R "2 is -(CH 2 ) u -C(O)-NR b -(CH 2 ) v -.
  • R 21 and R 23 are each independently -(CH 2 V, -(CH 2 ) r -C(O)-(CH 2 ) s -, -(CH 2 ) r -C(O)-O-(CH 2 ) v -, -(CH 2 ) r -C(S)-NR b -(CH 2 ) s -, -(CH 2 ) r -C(O)-NR b -(CH 2 ) s -, -(CH 2 ) r -NR b -(CH 2 ) s -, -(CH 2 ) r -O-(CH 2 ) s -, -(CH 2 VS(O) 0-2 -(CH 2 ) S -, -(CH 2 ) r -S(O) 0-2 -NR b -(CH 2 ) s - or -
  • R 21 and R 23 are each independently -(CH 2 V, -(CH 2 VC(O)-(CH 2 V, -(CH 2 VC(O)-O-(CH 2 V, -(CH 2 ) r -C(O)-NR b -(CH 2 ) s - or -(CH 2 ) r -ML b -(CH 2 ) s , and -(CH 2 ) r -C(O)-NR b -(CH 2 ) s -.
  • R 21 and R 23 each independently have the structure:
  • p is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, or 45;
  • w, r, and s are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20;
  • R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co -6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl.
  • X has the structure:
  • X has the structure:
  • X has the structure:
  • X has the structure:
  • X has the structure:
  • X has the structure:
  • H 1 and H 1 at each occurrence are independently N, O, S, or CH 2 ; r and s are each independently I 5 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0- 6 alkyl, or substituted or unsubstituted aryl-Co -6 alkyl.
  • X has the structure:
  • H 1 and H 1 at each occurrence are independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and f are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co -6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl.
  • X has the structure:
  • v and w are each independently 1, 2, 3, 4, or 5 and R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0-6 alkyl, or substituted or unsubstituted aryl-Co- ⁇ alkyl.
  • v is 1, 2 or 3
  • w is 1, 2, or 3
  • R b is hydrogen.
  • L is a linker moiety having the formula -X- Y-Z, wherein:
  • X is attached to one of the residues that comprises an AA targeting agent, and is an optionally substituted -R 22 -[CH 2 -CH 2 -O] t -R 23 -, -R 22 -cycloalkyl-R 23 -, -R 22 -aryl-R 23 -, or -R 22 -heterocyclyl-R 23 -, wherein;
  • R 22 and R 23 are each independently a covalent bond, -O-, -S-, -NR b -, substituted or unsubstituted straight or branched chain C 1-S0 alkylene, substituted or unsubstituted straight or branched chain C 1-50 heteroalkylene, substituted or unsubstituted straight or branched chain C 2-50 alkenylene, or substituted or unsubstituted C 2-50 heteroalkenylene;
  • R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl;
  • t is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50;
  • R 22 and R 23 are such that the backbone length of X remains about 200 atoms or less;
  • Y is an optionally present recognition group comprising at least a ring structure
  • Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody.
  • Y is present.
  • X is:
  • R 22 is -(CH 2 ) V -, -(CH 2 ) U -C(O)-(CH 2 ) V -, -(CH 2 ) U -C(O)-O-(CH 2 ) V -, -(CH 2 ) u -C(O)-NR b -(CH 2 ) v -, -(CH 2 ) u -C(S)-NR b -(CH 2 ) v -, -(CH 2 ) u -NR b -(CH 2 )v-, -(CH 2 ) U -O-(CH 2 ) V -, -(CH 2 ) u -S(0)o -2 -(CH 2 ) v -, -(CH 2 ) u -S(O) 0 . 2 -NR b -(CH 2 ) v - or -(CH 2 ) u -P(O)(OR
  • u and v are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 and t is 0 to 50.
  • R 23 has the structure:
  • p is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, or 45;
  • w and r are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20;
  • s is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20;
  • R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0-6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl;
  • X has the formula:
  • the values of v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • the values of v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • X has the structure:
  • the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • X has the structure:
  • the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively, is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
  • the ring structure of Y includes saturated, unsaturated, and aromatic carbocyclic rings and saturated, unsaturated, and aromatic heterocyclic rings.
  • the ring structure(s) may be mono-, bi-, or polycyclic, and include fused or unfused rings.
  • the ring structure(s) is optionally substituted with functional groups well known in the art including, but not limited to halogen, oxo, -OH, -CHO, -COOH, -NO 2 , -CN, -NH 2 , amidine, guanidine, hydroxylamine, -C(O)NH 2 , secondary and tertiary amides, sulfonamides, substituted or unsubstituted alkyl, substituted or unsubstituted alkenyl, substituted or unsubstituted alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyL sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, and phosphoalkynyl groups.
  • functional groups well known in the art
  • the ring structure of Y has the optionally substituted structure:
  • a, b, c, d, and e are each independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or f are simultaneously nitrogen.
  • Any open valences remaining on atoms constituting the ring structure may be filled by hydrogen or other substituents, or by the covalent attachments to X and Z.
  • b is carbon
  • its valence maybe filled by hydrogen, a substituent such as halogen, a covalent attachment to X, or a covalent attachment to Z.
  • a, b, c, d, and e are each carbon, while in others, a, c, d and fare each carbon.
  • At least one of a, b, c, d, or e is nitrogen, and in still others, f is oxygen or sulfur, hi yet another embodiment, the ring structure of Y is unsubstituted. In certain embodiments, Y is phenyl.
  • X-Y has the structure:
  • v is 1, 2 or 3 and w is 1, 2, or 3.
  • v is 1 or 2 and w is 1 or 2.
  • X has the structure:
  • H 1 and H 1' are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; and t and t' are each independently 0, 1, 2, 3, 4, or 5.
  • H 1 and H 1 are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
  • X has the structure:
  • H 1 and H 1 are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-Co -6 alkyl.
  • H 1 and H 1 are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
  • X has the structure:
  • H 1 and H 1' are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0 . 6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl.
  • H 1 and H 1 are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
  • X has the structure:
  • H 1 and H 1 are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co -6 alkyl, or substituted or unsubstituted aryl-Co -6 alkyl.
  • H 1 and H 1' are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
  • X has the structure:
  • H 1 and H 1 are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co- 6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl.
  • H 1 and H 1 are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
  • H 1 and H 1 are each independently N, O, S, or CH 2 ; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, Ij 2, 3, 4, or 5, and R b is hydrogen, substituted or unsubstituted C 1-10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co -6 alkyl, or substituted or unsubstituted aryl-Co -6 alkyl.
  • H 1 and H 1 are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
  • H 1 and H 1' are each independently N, O, S, or CH 2 ; r and s are each independently I 5 2, 3, 4, or 5; and t and t' are each independently 0, 1, 2, 3, 4, or 5.
  • H 1 and H 1' are each independently O or CH 2 ; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • X-Y has the structure:
  • the reactive group Z contains a moiety capable of forming a covalent linkage with an amino acid in a combining site of an antibody.
  • Z may be substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta- lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
  • Z is substituted alkyl.
  • Z may be a group that forms a reversible or irreversible covalent bond.
  • reversible covalent bonds may be formed using diketone Z groups such as those shown in FIGURE 8.
  • structures A-C may form reversible covalent bonds with reactive nucleophilic groups (e.g. lysine or cysteine side chain) in a combining site of an antibody.
  • R'i, R' 2 , R' 3 , and R 4 in structures A-C of FIGURE 8 represent substituents which can be C, H, N, O, P, S, halogen (F, Cl, Br, I) or a salt thereof.
  • substituents also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, or sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, phosphoalkynyl group.
  • R' 2 and R' 3 also could from a ring structure as exemplified in structures B and C.
  • X in FIGURE 8 could be a heteroatom.
  • FIGURE 9 includes the structures of other linker reactive groups that form reversible covalent bonds, e.g., structures B, G, H, and, where X is not a leaving group, E and F.
  • Z reactive groups that form an irreversible covalent bond with a combining site of an antibody include structures D-G in FIGURE 8 (e.g., when G is an imidate) and structures A, C and D of FIGURE 9.
  • structures E and F of FIGURE 9 may also form irreversible covalent bonds.
  • Such structures are useful for irreversibly attaching a targeting agent-linker to a reactive nucleophilic group to a combining site of an antibody.
  • Z is a 1,3-diketone moiety.
  • Z is alkyl substituted by a 1,3-diketone moiety.
  • Z has the structure:
  • Z has the structure:
  • One linker for use in AA targeting compounds and for preparing AA targeting agent-linker compounds includes a 1,3-diketone reactive group as Z.
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • u is O; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3.
  • u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • L has the structure:
  • AA 1 -AA 2 — AA n refers to an AA targeting agent wherein “AA 1 " is the first amino acid in the AA targeting agent sequence, as measured from the N- terminus, “AA 2 " is the second amino acid in the AA targeting agent sequence, as measured from the N-terminus, and “AA n " is the n th amino acid in the AA targeting agent sequence, as measured from the N-terminus.
  • v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, or 3.
  • v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3.
  • v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3.
  • v is O; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3.
  • v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
  • v is O, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and R b at each occurrence is independently hydrogen, substituted or unsubstituted Ci -10 alkyl, substituted or unsubstituted C 3-7 cycloalkyl-C 0-6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl.
  • v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 ; p is 3; and q is 0, 1, 2, or 3.
  • v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
  • HN refers to an AA targeting agent wherein "AA 1 " is the first amino acid in an AA targeting agent sequence as measured from the N-terminus, "AA 2 " is the second amino acid in an AA targeting agent sequence as measured from the N-terminus, and "AA n " is the n th amino acid in an AA targeting agent sequence as measured from the N-terminus.
  • the targeting agent further comprises a Lys residue at arbitrary position m+1 as measured from the N-terminus. It will be appreciated that in addition to linking to a Lys side chain in the body of an AA targeting agent, it is also possible to link to a Lys side chain on the N-terminus or C-terminus of an AA targeting agent.
  • an AA targeting compound administered to an immunocompetent individual may result in the production of antibodies against the conjugate.
  • Such antibodies may be directed to the variable region, including the antibody idiotype, as well as to the targeting agent or any linker used to conjugate the targeting agent to the antibody.
  • Reducing the immunogenicity of an AA targeting compound can be accomplished by methods well known in the art, such as by attaching long chain polyethylene glycol (PEG)-based spacers and the like to the AA targeting compound.
  • PEG polyethylene glycol
  • Long chain PEG and other polymers are known for their ability to mask foreign epitopes, resulting in the reduced immunogenicity of therapeutic proteins that display foreign epitopes (N.V. Katre, J. Immunol. 144:209-213 (1990); G.E.
  • the individual administered the antibody- AA targeting agent conjugate may be administered an immunosuppressant such as cyclosporin A, anti-CD3 antibody, and the like.
  • an AA targeting compound is as shown by Formula II, and includes stereoisomers, tautomers, solvates, prodrugs, and pharmaceutically acceptable salts thereof.
  • [AA targeting agent] is defined as in Formula I.
  • L' is a linker moiety linking an antibody to the targeting agent and having the formula -X-Y- Z'-.
  • X and Y are defined as in Formula I, and
  • Antibody is an antibody as defined herein.
  • FIGURES 10 and 11, respectively, illustrate the addition mechanism of a reactive, nucleophilic side chain in a combining site of an antibody to the Z moieties illustrated in FIGURES 8 and 9.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure: o o
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure: oVv hk N .. Antibody
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z'- Antibody has the structure:
  • HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
  • Z' is an attachment moiety comprising a covalent bond and 0-20 carbon atoms to which the Antibody is attached. This is shown below for the case where the linker has a diketone moiety as the reactive group and linkage occurs with the side chain amino group of a lysine residue in the antibody combining site.
  • the Antibody is shown schematically as bivalent with a reactive amino acid side chain for each combining site indicated.
  • linker has a beta lactam moiety as the reactive group and linkage occurs with the side chain amino group of a lysine residue in the antibody combining site.
  • the Antibody is shown schematically as bivalent with a reactive amino acid side chain for each combining site indicated.
  • v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3.
  • v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3.
  • v is 1 or 2 and w is 1 or 2.
  • v is 0, 1, 2, 3, A, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and R b at each occurrence is independently hydrogen, substituted or unsubstituted C 1-1O alkyl, substituted or unsubstituted C 3-7 cycloalkyl-Co- 6 alkyl, or substituted or unsubstituted aryl-C 0-6 alkyl.
  • v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3.
  • v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.

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Abstract

The present invention provides AA targeting compounds which comprise AA targeting agent-linker conjugates which are linked to a combining site of an antibody. Various uses of the compounds are provided, including methods to treat disorders connected to abnormal angiogenesis.

Description

ANTI-ANGIOGENIC COMPOUNDS
RELATED APPLICATIONS
[0001] The present application claims priority to U.S. Provisional Application No. 60/658,654, filed March 3, 2005, and U.S. Provisional Application No. 60/677,089, filed May 2, 2005, the disclosures of both of which are incorporated by reference herein in their entirety, including drawings and sequence listings.
FIELD OF THE DISCLOSURE
[0002] The present invention relates to novel compounds that possess anti-angiogenic activity and methods of making and using these compounds.
BACKGROUND
[0003] Angiogenesis is the fundamental process by which new blood vessels are formed and is essential to a variety of normal body activities such as reproduction, development and wound repair. Although angiogenesis is a highly regulated process under normal conditions, many diseases (characterized as "angiogenic diseases") are caused or exacerbated by unregulated angiogenesis. For example, ocular neovascularization has been implicated as the most common cause of blindness, hi certain existing conditions such as arthritis, newly formed capillary blood vessels invade the joints and destroy cartilage. In diabetes, new capillaries formed in the retina invade the vitreous, bleed, and cause blindness. Growth and metastasis of solid tumors are also angiogenesis-dependent (J. Folkman, Cancer Res., 46:467- 473 (1986), J. Folkman, J. Natl. Cancer Inst., 82:4-6 (1989)). It has been shown, for example, that tumors which enlarge to greater than 2 mm obtain their own blood supply by inducing the growth of new capillary blood vessels. Once these new blood vessels become embedded in the tumor, they provide a means for tumor cells to enter the circulation and metastasize to distant sites such as the liver, lungs, and bones (N. Weidner, et. al., N. Engl. J. Med., 324:1-8 (1991)).
[0004] Thrombospondin-1 (TSP-I) is an extracellular matrix protein secreted in response to activation of platelets by thrombin. Various studies have demonstrated that certain peptide analogs of TSP-I possess antiangiogenesic activity. See, e.g., WO 01/38397, WO 01/38347, WO 99/61476, U.S. Patent Application Pub. No. 2003/0045477, U.S. Patent Application Pub. No. 2002/0183242, U.S. Patent No. 6,774,211, U.S. Patent No. 6,716,963, U.S. Patent No. 6,753,408, and U.S. Patent No. 5,932,545. However, it is desirable to prepare antiangiogenic compounds having improved profiles of activity.
BRIEF SUMMARY
[0005] The present invention provides thrombospondin receptor targeting compounds (AA targeting compounds) with unique specificity and biological properties which are useful in many applications. The thrombospondin targeting compounds of the invention are formed by covalently linking a thrombospondin targeting agent to a combining site of an antibody. Pharmaceutical compositions comprising targeting compounds of the invention and a pharmaceutically acceptable carrier are also provided.
[0006] A first aspect of the invention is an AA targeting agent- linker conjugate having Formula I:
L - [AA targeting agent] (I)
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2~Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID NO:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6);
R1-Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); ..
R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ED NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R1-Sar-Gly-Val-(D-Ile)-Thi--Nva-Ile-Axg-Pro-R3 (SEQ ID NO: 17); wherein
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH33 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH35 NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NH(CH3)C(O)CH2CH2(CH2CH2O)1-5Me5 an amino protecting group, a lipid fatty acid group or a carbohydrate;
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH35 C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH35 C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L is a linker moiety having the formula -X-Y-Z, wherein:
X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
Y is an optionally present recognition group comprising at least a ring structure; and Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody; and
pharmaceutically acceptable salts, stereoisomers, tautomers, solvates, and prodrugs thereof.
[0007] In some embodiments of compounds of Formula I, X is:
-R22-P-R23- or -R22-P-R21-P'-R23-
wherein:
P and P' are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N- vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), ρoly(N-ethylaminoacrylate), ρoly(N,N-dimethyl aminoacrylate), ρoly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate), poly(N,N-diethyl aminomethacrylate), poly(ethyleneimine), polymers of quaternary amines, such as poly(N,N,N-trimethylaminoacrylate chloride), poly(methyacrylamidopropyltrimethyl ammonium chloride), proteoglycans such as chondroitin sulfate-A (4-sulfate) chondroitin sulfate-C (6-sulfate) and chondroitin sulfate-B, polypeptides such as polyserine, polythreonine, polyglutamine, natural or synthetic polysaccharides such as chitosan, hydroxy ethyl cellulose, and lipids;
R21, R22, and R23 are each independently a covalent bond, -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-5O alkylene, or substituted or unsubstituted straight or branched chain C 1.50 heteroalkylene;
Rb is hydrogen, substituted or unsubstituted CMO alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-β alkyl; and R21, R22, and R23 are selected such that the backbone length of X remains about 200 atoms or less.
[0008] In some embodiments of compounds of Formula I, X is attached to an amino acid residue in [AA targeting agent], and is an optionally substituted -R22-[CH2-CH2-O]t-R23-, -R22-cycloalkyl-R23-, -R22-aryl-R23-, or -R22-heterocyclyl-R23-, wherein t is 0 to 50.
[0009] In some embodiments of compounds of Formula I, R22 is -(CH2)v-5 -(CH2)u-C(O)-(CH2)v-5 -(CH2)U-C(O)-O-(CH2V, -(CH2)u-C(S)-NRb-(CH2)v, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2)U-O-(CH2)V-, -(CH2)u-S(0)o-2-(CH2)v-3 -(CH2)u-S(O)0-2-NRb-(CH2V, or -(CH2)u-P(O)(ORb)-O-(CH2)v-, wherein u and v are independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
[0010] In some embodiments of compounds of Formula I, R21 and R23 are independently -(CH2)S-, -(CH2)r-C(O)-(CH2)s-, -(CH2)r-C(O)-O-(CH2)v-, -(CH2)r-C(S)-NRb-(CH2)s-5 -(CH2)r-C(O)-NRb-(CH2)s-, -(CH2)r-NRb-(CH2)s-, -(CH2)r-O-(CH2)s-, -(CH2)r-S(O)0-2-(CH2)s-, -(CH2)r-S(0)o-2-NRb-(CH2)s-, or -(CH2)r-P(O)(ORb)-O-(CH2)s-, wherein r, s, and v are independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
[0011] In some embodiments of Formula I, if t>l or if X is -R22-[CH2-CH2-O]t-R23-, -R22-cycloalkyl-R23, -R22-aryl-R23-, or -R22-heterocyclyl-R23-, Y is present. FIGURES IA and IB illustrate two embodiments according to Formula I that employ Ac-Sar-Gly-Val-(D- alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO:1, wherein R1 is Ac and R3 is absent) and Sar- Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-NHEt (SEQ ID NO:1, wherein R1 is absent and R3 is NHEt), respectively, as targeting agents. FIGURE 2 illustrates other embodiments according to Formula I that employ Ac-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-NHEt (SEQ ID NO:3, wherein R1 is Ac and R3 is NHEt) as a targeting agent.
[0012] Another aspect of the invention, illustrated in Formula II, is an AA targeting compound comprising an AA targeting agent covalently linked to a combining site of an Antibody via an intervening linker L1. The Antibody portion of an AA targeting compound can include whole (full length) antibody, unique antibody fragments, or any other forms of an antibody as this term is used herein. In one embodiment, the Antibody is a humanized version of a murine aldolase antibody comprising a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody. In another embodiment, the Antibody is a chimeric antibody comprising the variable region from a murine aldolase antibody and a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody. In a further embodiment, the Antibody is a fully human version of a murine aldolase antibody comprising a polypeptide sequence from natural or native human IgG, IgA, IgM, IgD, or IgE antibody
Antibody - L' - [AA targeting agent ] (II)
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Tlτr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID NO:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6),~ R^Sar-Phe-VaHD-alloIle^Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:7); R^LyS-GIy-VaI-(D-BlIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID N0:8); R2-Glu-Gly-Val-(D-alloIle)-Ttø-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:9); R2-Pro-Gly- VaI-(D-BlIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloπe)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R^Pro-tCyclo-Leu^Val-φ-alloIφ-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R1-Sar-Gly-Val-(D-Ile)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 17); wherein
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NH(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R3 is COOH5 C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH35 C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H55
C(O)NHCH2CH2OCH35C(O)NHOCH35 C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L' is a linker moiety having the formula -X-Y-Z', wherein:
X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
Y is an optionally present recognition group comprising at least a ring structure; and
Z is a group that is covalently linked to a side chain in a combining site of an antibody;
and pharmaceutically acceptable salts, stereoisomers, tautomers, solvates, and prodrugs thereof.
[0013] hi some embodiments of compounds of Formula II, X is: -R22-P-R23- or -R22-P-R21-P'-R23-
wherein:
P and P' are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer side chains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyreiie, polyaminoacrylate, ρoly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate), poly(N,N-diethyl aminomethacrylate), poly(ethyleneimine), polymers of quaternary amines, such as poly(N,N,N-trimethylaminoacrylate chloride), ρoly(methyacrylamidopropyltrimethyl ammonium chloride), proteoglycans such as chondroitin sulfate-A (4-sulfate) chondroitin sulfate-C (6-sulfate) and chondroitin sulfate-B, polypeptides such as polyserine, polythreonine, polyglutamine, natural or synthetic polysaccharides such as chitosan, hydroxy ethyl cellulose, and lipids;
R21, R22, and R23 are each independently a covalent bond, -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-So alkylene, or substituted or unsubstituted straight or branched chain C1-5O heteroalkylene;
Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-ό alkyl, or substituted or unsubstituted aryl-Co-6 alkyl; and
R21, R22, and R23 are selected such that the backbone length of X remains about 200 atoms or less.
[0014] In some embodiments of compounds of Formula II, X is attached to an amino acid residue in [AA targeting agent], and is an optionally substituted -R22-[CH2-CH2-O]t-R23-, -R22-cycloalkyl-R23-, -R22-aryl-R23-, or -R22-heterocyclyl-R23-, wherein t is 0 to 50. [0015] In some embodiments of compounds of Formula II, R22 is -(CH2)V-, -(CH2)U-C(O)-(CH2)V-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(S)-NRb-(CH2)v-5 -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2)U-O-(CH2)V-, -(CH2)u-S(0)o-2-(CH2)v-, -(CH2)u-S(O)0-2-NRb-(CH2)v-, or -(CH2)u-P(O)(ORb)-O-(CH2)v-, wherein u and v are independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
[0016] In some embodiments of compounds of Formula II, R21 and R23 are independently -(CH2)S-, -(CH2)r-C(O)-(CH2)s-, -(CH2)r-C(O)-O-(CH2)v-, -(CH2)r-C(S)-NRb-(CH2)s-, -(CH2)r-C(O)-NRb-(CH2)s-, -(CH2)r-NRb-(CH2)s-, -(CH2VO-(CH2)S-, -(CH2)r-S(0)o-2-(CH2)s-, -(CH2)r-S(O)0.2-NRb-(CH2)s-, or -(CH2)r-P(O)(ORb)-O-(CH2)s-, wherein r, s, and v are independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
[0017] Exemplary compounds in accordance with Formula II, wherein Antibody is the humanized aldolase antibody h38c2 IgGl, include:
Figure imgf000011_0001
Antibody
Figure imgf000011_0002
Figure imgf000011_0003
Antibody
Figure imgf000012_0001
Figure imgf000012_0003
Figure imgf000012_0004
Figure imgf000012_0005
Figure imgf000013_0001
Figure imgf000013_0002
[0018] Another aspect of the invention, illustrated in Formula III, is an AA targeting compound in which two AA targeting agents, which may be the same or different, are each covalently linked to a combining site of an antibody. The Antibody portion of an AA targeting compound can include whole (full length) antibody, unique antibody fragments, or any other forms of an antibody as this term is used herein. In one embodiment, the Antibody is a humanized version of a murine aldolase antibody comprising a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody. In another embodiment, the Antibody is a chimeric antibody comprising the variable region from a murine aldolase antibody and a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody. In a further embodiment, the Antibody is a fully human version of a murine aldolase antibody comprising a polypeptide sequence from natural or native human IgG, IgA, IgM, IgD, or IgE antibody.
Antibody[-L'-[AA targeting agent]]2 (III)
wherein:
[AA targeting agent], Antibody, and L' are as defined according to Formula II. FIGURE 3 illustrates embodiments according to Formula III that employ Sar-Gly-Val-(D-alloIle)-Thr- Nva-Ile-Arg-Pro-NHEt (SEQ ID NO:1, wherein R1 is absent and R3 is NHEt) as a targeting agent. FIGURE 4 illustrates other embodiments according to Formula III that employ Ac- Sax-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO:1) as a targeting agent. FIGURE 5 illustrates other embodiments according to Formula III that employ Ac-Sar-Gly- VaI-(D- alloIle)-Thr-Nva-Lys-Arg-Pro-NHEt (SEQ ID NO:3) as a targeting agent.
[0019] Also provided are methods of delivering or administering AA targeting compounds of the invention and methods of treatment using AA targeting compounds of the invention. For example, methods of treating (including preventing) a disease or condition associated with abnormal angiogenesis in a subject include administering a therapeutically effective amount of an AA targeting compound of the invention to the subject. Diseases and conditions that may be treated include cancer, arthritis, hypertension, kidney disease, psoriasis, angiogenesis of the eye associated with ocular disorder, infection or surgical intervention, macular degeneration, diabetic retinopathy, and the like.
[0020] Another aspect of the invention includes methods of using AA targeting compounds of the invention for diagnostic purposes. For example, the AA targeting compounds can be used for the diagnosis of a disease or condition associated with abnormal angiogenesis, including cancer, arthritis, psoriasis, angiogenesis of the eye associated with an ocular disorder, infection or surgical intervention, macular degeneration, diabetic retinopathy, and the like.
BRIEF DESCRIPTION OF THE DRAWINGS
[0021] FIGURES IA and B illustrate embodiments according to Formula I.
[0022] FIGURE 2 illustrate additional embodiments according to Formula I.
[0023] FIGURE 3 illustrates embodiments according to Formula III. Aldolase Ab-N- represents a covalent bond to a side of an amino acid in a combining site of an antibody.
[0024] FIGURE 4 illustrates additional embodiments according to Formula III. Aldolase Ab-N-represents a covalent bond to a side of an amino acid in a combining site of an antibody.
[0025] FIGURE 5 illustrates additional embodiments according to Formula III. Antibody-N- represents a covalent bond to a side of an amino acid in a combining site of an antibody. [0026] FIGURES 6 A and FIGURE 6B illustrate the solid phase synthesis of targeting agent-linker conjugates of the present invention.
[0027] FIGURE 7 A illustrates the amino acid sequence alignment of the variable domains of m38c2, h38c2, and human germlines. Framework regions (FR) and complementarity determining regions (CDR) are defined according to Kabat et al. Asterisks mark differences between m38c2 and h38c2 or between h38c2 and the human germlines. FIGURE 7B illustrates the amino acid sequence of the light and heavy chains of h38c2 IgGl.
[0028] FIGURE 8 shows various structures that may serve as linker reactive groups. Structures A-C form reversible covalent bonds with surface accessible reactive nucleophilic groups (e.g., lysine or cysteine side chain) of a combining site of an antibody. R'ls R'2, R'3, and R4 in structures A-C represent substituents which include, for example, C, H, N, O, P, S, halogen (F, Cl, Br, I) or a salt thereof. X is N, C, or any other heteroatom. These substituents may also include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, or sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, phosphoalkynyl group. R'2 and R3 could be cyclic as exemplified in structures B and C while X could be a heteroatom. For example, structure A could form an irreversible covalent bond with a reactive nucleophile if X is N and if K\ and R3 form part of a cyclic structure. Structures D-G may form nonreversible covalent bonds with reactive nucleophilic groups in a combining site of an antibody. In these structures, R"i and R"2 represent C, O, N, halide or leaving groups such as mesyl or tosyl.
[0029] FIGURE 9 shows various electrophiles that are suitable for reactive modification with a reactive amino acid side chain in a combining site of an antibody and thus may serve as linker reactive groups. Key: (A) acyl beta-lactam; (B) simple diketone; (C) succinimide active ester; (D) maleimide; (E) haloacetamide with linker; (F) haloketone; (G) cyclohexyl diketone; and (H) aldehyde. The squiggle line indicates the point of attachment to the rest of the linker or targeting agent. X refers to a halogen.
[0030] FIGURE 10 shows the addition of a nucleophilic ("nu") side chain in an antibody combining site to compounds A-G in FIGURE 8. Antibody- Nu- refers to a covalent bond to an amino acid side chain bearing a nucleophile in a combining site of an antibody. [0031] FIGURE 11 shows the addition of a nucleophilic side chain in an antibody combining to compounds A-H in FIGURE 9. Antibody- Nu- refers to a covalent bond to an amino acid side chain bearing a nucleophile in a combining site of an antibody.
[0032] FIGURE 12 shows a synthesis of:
Figure imgf000016_0001
[0033] FIGURE 13 shows a synthesis of:
Figure imgf000016_0002
[0034] FIGURE 14 shows a synthesis of:
Figure imgf000016_0003
[0035] FIGURE 15 shows a synthesis of:
Figure imgf000016_0004
[0036] FIGURE 16 shows a synthesis of:
Figure imgf000016_0005
[0037] FIGURE 17 shows a synthesis of:
Figure imgf000016_0006
[0038] FIGURE 18 shows a synthesis of:
Figure imgf000017_0001
[0039] FIGURE 19 shows a synthesis of:
Figure imgf000017_0002
[0040] FIGURE 20 shows a synthesis of:
Figure imgf000017_0003
[0041] FIGURE 21 shows syntheses of:
Figure imgf000017_0004
Figure imgf000017_0005
and
[0042] FIGURE 22 shows a synthesis of:
Figure imgf000017_0006
[0043] FIGURE 23 shows a synthesis of:
Figure imgf000017_0007
[0044] FIGURE 24 shows a synthesis of:
Figure imgf000017_0008
[0045] FIGURE 25 shows a synthesis of: AA1-AA2-AAn
Figure imgf000018_0001
[0046] FIGURE 26 shows a synthesis of:
Figure imgf000018_0002
[0047] FIGURE 27 shows a synthesis of:
NHAc
Figure imgf000018_0003
[0048] FIGURE 28 shows a synthesis of:
Figure imgf000018_0004
DETAILED DESCRIPTION
[0049] Definitions
[0050] The following abbreviations, terms and phrases are used herein as defined below.
Table 1 : Amino acid abbreviations
Amino acid One letter Three letter abbreviation abbreviation
Alanine A Ala
Arginine R Arg
Asparagine N Asn
Aspartic acid D Asp
Cysteine C Cys
Glutamic acid E GIu
Glutamine Q GIn
Glycine G GIy Histidine H His
Isoleucine I He
Leucine L Leu
Lysine K Lys
Methionine M Met
Phenylalanine F Phe
Proline P Pro
Serine S Ser
Threonine T Thr
Tryptophan W Trp
Tyrosine Y Tyr
Valine V VaI
Norleucine -_ NIe
Norvaline — Nva
Sarcosine Sar
[0051] Every amino-bearing side chain of a targeting agent can be terminated by R1 or R2 as defined herein. Every COOH/COO"-bearing side chain of a targeting agent can be terminated by R3 as defined herein.
[0052] Sarcosine refers to N-methyl glycine.
[0053] Norvaline refers to:
Figure imgf000019_0001
[0054] 3-(4-thiazolyl)-L-Alanine or 3-(4-thiazolyl)-L-Ala refers to:
H2N
Figure imgf000019_0002
[0055] 3,4-Dimethoxy-Phenylalanine or 3,4-Dimethoxy-Phe refers to: H9N
Figure imgf000020_0001
[0056] 4-Cyanophenylalanine or 4-Cyano-Phe refers to:
Figure imgf000020_0002
[0057] D-alloisoleucine or D-alloIle or D-alle refers to:
Figure imgf000020_0003
[0058] α-ally-glycine or α-ally-Gly refers to:
Figure imgf000020_0004
[0059] Cycloleucine or Cyclo-Leu refers to:
Figure imgf000020_0005
[0060] 2-furyl-alanine or 2-furyl-Ala refers to:
Figure imgf000021_0001
[0061] Unless indicated otherwise by a "D" prefix, e.g., D-AIa or N-Me-D-IIe, the stereochemistry of the alpha-carbon of the amino acids and aminoacyl residues in peptides described in this specification and the appended claims is the natural or "L" configuration. The Cahn-Ingold-Prelog "R" and "S" designations are used to specify the stereochemistry of chiral centers in certain acyl substituents at the N-terminus of the peptides. The designation "R5S" is meant to indicate a racemic mixture of the two enantiomeric forms. This nomenclature follows that described in R. S. Cahn, et al., Angew. Chem. Int. Ed. Engl., 5:385-415 (1966).
[0062] "Polypeptide," "peptide," and "protein" are used interchangeably to refer to a polymer of amino acid residues. As used herein, these terms apply to amino acid polymers in which one or more amino acid residues is an artificial chemical analog of a corresponding naturally occurring amino acid. These terms also apply to naturally occurring amino acid polymers. Amino acids can be in the L or D form as long as the binding function of the peptide is maintained. Peptides may be cyclic, having an intramolecular bond between two non-adjacent amino acids within the peptide, e.g., backbone to backbone, side-chain to backbone and side-chain to side-chain cyclization. Cyclic peptides can be prepared by methods well know in the art. See e.g., U.S. Patent No. 6,013,625.
[0063] All peptide sequences are written according to the generally accepted convention whereby the alpha-N-terminal amino acid residue is on the left and the alpha-C-terminal amino acid residue is on the right. As used herein, the term "N-terminus" refers to the free alpha-amino group of an amino acid in a peptide, and the term "C-terminus" refers to the free α-carboxylic acid terminus of an amino acid in a peptide. A peptide which is N-terminated with a group refers to a peptide bearing a group on the alpha-amino nitrogen of the N- terminal amino acid residue. An amino acid which is N-terminated with a group refers to an amino acid bearing a group on the alpha-amino nitrogen. [0064] In general, "substituted" refers to a group as defined below in which one or more bonds to a hydrogen atom contained therein are replaced by a bond to non-hydrogen or non- carbon atoms such as, but not limited to, a halogen atom such as F, Cl, Br, and I; an oxygen atom in groups such as hydroxyl groups, alkoxy groups, aryloxy groups, and ester groups; a sulfur atom in groups such as thiol groups, alkyl and aryl sulfide groups, sulfone groups, sulfonyl groups, and sulfoxide groups; a nitrogen atom in groups such as amines, amides, alkylamines, dialkylamines, arylamines, alkylarylamines, diarylamines, N-oxides, imides, and enamines; a silicon atom in groups such as in trialkylsilyl groups, dialkylarylsilyl groups, alkyldiarylsilyl groups, and triarylsilyl groups; and other heteroatoms in various other groups. Substituted alkyl groups and also substituted cycloalkyl groups and others also include groups in which one or more bonds to a carbon(s) or hydrogen(s) atom is replaced by a bond to a heteroatom such as oxygen in carbonyl, carboxyl, and ester groups; nitrogen in groups such as imines, oximes, hydrazones, and nitriles. As employed herein, a group which is "optionally substituted" may be substituted or unsubstituted. Thus, e.g., "optionally substituted alkyl" refers to both substituted alkyl groups and unsubstituted alkyl groups.
[0065] The phrase "unsubstituted alkyl" refers to alkyl groups that do not contain heteroatoms. Thus, the phrase includes straight chain alkyl groups such as methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, decyl, undecyl, dodecyl and the like. The phrase also includes branched chain isomers of straight chain alkyl groups, including but not limited to, the following which are provided by way of example: -CH(CHs)2, - CH(CH3)(CH2CH3), -CH(CH2CH3)2, -C(CH3)3, -C(CH2CH3)3, -CH2CH(CH3)2, - CH2CH(CH3)(CH2CH3), -CH2CH(CH2CH3)2, -CH2C(CH3)3, -CH2C(CH2CH3)3; - CH(CH3)CH(CH3)(CH2CH3), -CH2CH2CH(CH3)2, -CH2CH2CH(CH3)(CH2CH3), - CH2CH2CH(CH2CH3)2, -CH2CH2C(CH3)3, -CH2CH2C(CH2CH3)3, -CH(CH3)CH2CH(CH3)2, -CH(CH3)CH(CH3)CH(CH3)2, -CH(CH2CH3)CH(CH3)CH(CH3)(CH2CH3), and others. The phrase does not include cycloalkyl groups. Thus, the phrase unsubstituted alkyl groups includes primary alkyl groups, secondary alkyl groups, and tertiary alkyl groups. Unsubstituted alkyl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound. Possible unsubstituted alkyl groups include straight and branched chain alkyl groups having 1 to 20 carbon atoms. Alternatively, such unsubstituted alkyl groups have from 1 to 10 carbon atoms or are lower alkyl groups having from 1 to about 6 carbon atoms. Other unsubstituted alkyl groups include straight and branched chain alkyl groups having from 1 to 3 carbon atoms and include methyl, ethyl, propyl, and -CH(CH3)2.
[0066] The phrase "substituted alkyl" refers to an alkyl group in which one or more bonds to a carbon(s) or hydrogen(s) are replaced by a bond to non-hydrogen and non-carbon atoms such as, but not limited to, a halogen atom in halides such as F, Cl, Br, and I; an oxygen atom in groups such as hydroxyl groups, alkoxy groups, aryloxy groups, and ester groups; a sulfur atom in groups such as thiol groups, alkyl and aryl sulfide groups, sulfone groups, sulfonyl groups, and sulfoxide groups; a nitrogen atom in groups such as amines, amides, alkylamines, dialkylamines, arylamines, alkylarylarnines, diarylamines, N-oxides, imides, and enamines; a silicon atom in groups such as in trialkylsilyl groups, dialkylarylsilyl groups, alkyldiarylsilyl groups, and triarylsilyl groups; and other heteroatoms in various other groups. Substituted alkyl groups also include groups in which one or more bonds to a carbon(s) or hydrogen(s) atom is replaced by a bond to a heteroatom such as oxygen in carbonyl, carboxyl, and ester groups; nitrogen in groups such as imines, oximes, hydrazones, and nitriles. Substituted alkyl groups include, among others, alkyl groups in which one or more bonds to a carbon or hydrogen atom is/are replaced by one or more bonds to fluorine atoms. One example of a substituted alkyl group is the trifluoromethyl group and other alkyl groups that contain the trifluoromethyl group. Other alkyl groups include those in which one or more bonds to a carbon or hydrogen atom is replaced by a bond to an oxygen atom such that the substituted alkyl group contains a hydroxyl, alkoxy, aryloxy group, or heterocyclyloxy group. Still other alkyl groups include alkyl groups that have an amine, alkylamine, dialkylamine, arylamine, (alkyl)(aryl)amine, diarylamine, heterocyclylamine, (alkyl)(heterocyclyl)amine, (aryl)(heterocyclyl)amine, or diheterocyclylamine group.
[0067] The phrase "unsubstituted alkylene" refers to a divalent unsubstituted alkyl group as defined above. Thus methylene, ethylene, and propylene are each examples of unsubstituted alkylenes. The phrase "substituted alkylene" refers to a divalent substituted alkyl group as defined above. Substituted or unsubstituted lower alkylene groups have from 1 to about 6 carbons.
[0068] The phrase "unsubstituted cycloalkyl" refers to cyclic alkyl groups such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl and such rings substituted with straight and branched chain alkyl groups as defined above. The phrase also includes polycyclic alkyl groups such as, but not limited to, adamantyl norbornyl, and bicyclo[2.2.2]octyl and the like, as well as such rings substituted with straight and branched chain alkyl groups as defined above. Thus, the phrase would include methylcylcohexyl groups among others. The phrase does not include cyclic alkyl groups containing heteroatoms. Unsubstituted cycloalkyl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound. In some embodiments unsubstituted cycloalkyl groups have from 3 to 20 carbon atoms. In other embodiments, such unsubstituted alkyl groups have from 3 to 8 carbon atoms while in others, such groups have from 3 to 7 carbon atoms.
[0069] The phrase "substituted cycloalkyl" " has the same meaning with respect to unsubstituted cycloalkyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups. Thus, the phrase includes, but is not limited to, oxocyclohexyl, chlorocyclohexyl, hydroxycyclopentyl, and chloromethylcyclohexyl groups.
[0070] The phrase "unsubstituted aryl" refers to aryl groups that do not contain heteroatoms. Thus the phrase includes, but is not limited to, groups such as phenyl, biphenyl, anthracenyl, and naphthenyl by way of example. Although the phrase "unsubstituted aryl" includes groups containing condensed rings such as naphthalene, it does not include aryl groups that have other groups such as alkyl or halo groups bonded to one of the ring members, as aryl groups such as tolyl are considered herein to be substituted aryl groups as described below. Typically, an unsubstituted aryl may be a lower aryl, having from 6 to about 10 carbon atoms. One unsubstituted aryl group is phenyl. Unsubstituted aryl groups may be bonded to one or more carbon atom(s), oxygen atom(s), nitrogen atom(s), and/or sulfur atom(s) in the parent compound, however.
[0071] The phrase "substituted aryl group" has the same meaning with respect to unsubstituted aryl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups. However, a substituted aryl group also includes aryl groups in which one of the aromatic carbons is bonded to one of the non-carbon or non-hydrogen atoms described above and also includes aryl groups in which one or more aromatic carbons of the aryl group is bonded to a substituted and/or unsubstituted alkyl, alkenyl, or alkynyl group as defined herein. This includes bonding arrangements in which two carbon atoms of an aryl group are bonded to two atoms of an alkyl, alkenyl, or alkynyl group to define a fused ring system (e.g., dihydronaphthyl or tetrahydronaphthyl). Thus, the phrase "substituted aryl" includes, but is not limited to tolyl and hydroxyphenyl among others.
[0072] The phrase "unsubstituted alkenyl" refers to straight and branched chain and cyclic groups such as those described with respect to unsubstituted alkyl groups as defined above, except that at least one double bond exists between two carbon atoms. Examples include, but are not limited to vinyl, -CH=C(H)(CH3), -CH=C(CH3)2, -C(CH3)=C(H)2j -C(CH3)=C(H)(CH3), -C(CH2CH3)=CH2, cyclohexenyl, cyclopentenyl, cyclohexadienyl, butadienyl, pentadienyl, and hexadienyl among others. Lower unsubstituted alkenyl groups have from 1 to about 6 carbons.
[0073] The phrase "substituted alkenyl" has the same meaning with respect to unsubstituted alkenyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups. A substituted alkenyl group includes alkenyl groups in which a non-carbon or non-hydrogen atom is bonded to a carbon double bonded to another carbon and those in which one of the non-carbon or non-hydrogen atoms is bonded to a carbon not involved in a double bond to another carbon. For example, -CH=CH-OCH3 and -CH=CH-CH2-OH are both substituted alkenyls. Oxoalkenyls wherein a CH2 group is replaced by a carbonyl, such as -CH=CH-C(O)-CH3, are also substituted alkenyls.
[0074] The phrase "unsubstituted alkenylene" refers to a divalent unsubstituted alkenyl group as defined above. For example, -CH=CH- is an exemplary unsubstituted alkenylene. The phrase "substituted alkenylene" refers to a divalent substituted alkenyl group as defined above.
[0075] The phrase "unsubstituted alkynyl" refers to straight and branched chain groups such as those described with respect to unsubstituted alkyl groups as defined above, except that at least one triple bond exists between two carbon atoms. Examples include, but are not limited to, -C≡C(H), -C≡C(CH3), -CsC(CH2CH3), -C(H2)CsC(H), -C(H)2C≡C(CH3), and - C(H)2C=C(CH2CH3) among others. Unsubstituted lower alkynyl groups have from 1 to about 6 carbons.
[0076] The phrase "substituted alkynyl" has the same meaning with respect to unsubstituted alkynyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups. A substituted alkynyl group includes alkynyl groups in which a non-carbon or non-hydrogen atom is bonded to a carbon triple bonded to another carbon and those in which a non-carbon or non-hydrogen atom is bonded to a carbon not involved in a triple bond to another carbon. Examples include, but are not limited to, oxoalkynyls wherein a CH2 group is replaced by a carbonyl, such as -C(O)-CH s€H-CH3 and -C(O)-CH2-CH =€H.
[0077] The phrase "unsubstituted alkynylene" refers to a divalent unsubstituted alkynyl group as defined above. A -C ≡€- is an example of an unsubstituted alkynylene. The phrase "substituted alkynylene" refers to a divalent substituted alkynyl group as defined above.
[0078] The phrase "unsubstituted aralkyl" refers to unsubstituted alkyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkyl group is replaced with a bond to an aryl group as defined above. For example, methyl (-CH3) is an unsubstituted alkyl group. If a hydrogen atom of the methyl group is replaced by a bond to a phenyl group, such as if the carbon of the methyl were bonded to a carbon of benzene, then the compound is an unsubstituted aralkyl group (i.e., a benzyl group). Thus, the phrase includes, but is not limited to, groups such as benzyl, diphenylmethyl, and 1-phenylethyl (-CH(C6Hs)(CH3)).
[0079] The phrase "substituted aralkyl" has the same meaning with respect to unsubstituted aralkyl groups that substituted aryl groups have with respect to unsubstituted aryl groups. However, substituted aralkyls also include groups in which a carbon or hydrogen bond of the alkyl part of the group is replaced by a bond to a non-carbon or a non- hydrogen atom. Examples of substituted aralkyl groups include, but are not limited to, - CH2Q=O)(C6H5), and -CH2(2-methylphenyl).
[0080] The phrase "unsubstituted aralkenyl" refers to unsubstituted alkenyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkenyl group is replaced with a bond to an aryl group as defined above. For example, vinyl is an unsubstituted alkenyl group. If a hydrogen atom of the vinyl group is replaced by a bond to a phenyl group, such as if a carbon of the vinyl were bonded to a carbon of benzene, then the compound is an unsubstituted aralkenyl group (i.e., a styryl group). Thus, the phrase includes, but is not limited to, groups such as styryl, diphenylvinyl, and 1-ρhenylethenyl (- C(C6H5)(CH2)).
[0081] The phrase "substituted aralkenyl" has the same meaning with respect to unsubstituted aralkenyl groups that substituted aryl groups have with respect to unsubstituted aryl groups. A substituted aralkenyl group also includes groups in which a carbon or hydrogen bond of the alkenyl part of the group is replaced by a bond to a non-carbon or a non-hydrogen atom. Examples of substituted aralkenyl groups include, but are not limited to, -CH=C(Cl)(C6H5), and -CH=CH(2-methylphenyl).
[0082] The phrase "unsubstituted aralkynyl" refers to unsubstituted alkynyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkynyl group is replaced with a bond to an aryl group as defined above. For example, acetylene is an unsubstituted alkynyl group. If a hydrogen atom of the acetylene group is replaced by a bond to a phenyl group, such as if a carbon of the acetylene were bonded to a carbon of benzene, then the compound is an unsubstituted aralkynyl group. Thus, the phrase includes, but is not limited to, groups such as -C ≡€-phenyl and -CH2-C ≡€-phenyl.
[0083] The phrase "substituted aralkynyl" has the same meaning with respect to unsubstituted aralkynyl groups that substituted aryl groups have with respect to unsubstituted aryl groups. However, a substituted aralkynyl group also includes groups in which a carbon or hydrogen bond of the alkynyl part of the group is replaced by a bond to a non-carbon or a non-hydrogen atom. Examples of substituted aralkynyl groups include, but are not limited to, -C ^e-C(Br)(C6H5) and -C ≡€(2-methylphenyl).
[0084] The phrase "unsubstituted heteroalkyl" refers to unsubstituted alkyl groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S. Unsubstituted heteroalkyls containing N may have NH or N(unsubstituted alkyl) in the carbon chain. For example, unsubstituted heteroalkyls include alkoxy, alkoxyalkyl, alkoxyalkoxy, thioether, alkylaminoalkyl, aminoalkyloxy, and other such groups. Typically, unsubstituted heteroalkyl groups contain 1-5 heteroatoms, and particularly 1-3 heteroatoms. In some embodiments unsubstituted heteroalkyls include, for example, alkoxyalkoxyalkoxy groups such as ethyloxyethyloxyethyloxy.
[0085] The phrase "substituted heteroalkyl" has the same meaning with respect to unsubstituted heteroalkyl groups that substituted alkyl groups have with respect to unsubstituted alkyl groups.
[0086] The phrase "unsubstituted heteroalkylene" refers to a divalent unsubstituted heteroalkyl group as defined above. For example, -CH2-O-CH2- and -CH2-NH-CH2CH2- are both exemplary unsubstituted heteroalkylenes. The phrase "substituted heteroalkylene" refers to a divalent substituted heteroalkyl group As defined above.
[0087] The phrase "unsubstituted heteroalkenyl" refers to unsubstituted alkene groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S. Unsubstituted heteroalkenyls containing N may have NH or N(unsubstituted alkyl or alkene) in the carbon chain. The phrase "substituted heteroalkenyl" has the same meaning with respect to unsubstituted heteroalkenyl groups that substituted heteroalkyl groups have with respect to unsubstituted heteroalkyl groups.
[0088] The phrase "unsubstituted heteroalkenylene" refers to a divalent unsubstituted heteroalkenyl group as defined above. Thus -CH2-O-CH=CH- is an example of an unsubstituted heteroalkenylene. The phrase "substituted heteroalkenylene" refers to a divalent substituted heteroalkenyl group as defined above.
[0089] The phrase "unsubstituted heteroalkynyl" refers to unsubstituted alkynyl groups as defined above in which the carbon chain is interrupted by one or more heteroatoms chosen from N, O, and S. Unsubstituted heteroalkynyls containing N may have NH or N(unsubstituted alkyl, alkene, or alkyne) in the carbon chain. The phrase "substituted heteroalkynyl" has the same meaning with respect to unsubstituted heteroalkynyl groups that substituted heteroalkyl groups have with respect to unsubstituted heteroalkyl groups.
[0090] The phrase "unsubstituted heteroalkynylene" refers to a divalent unsubstituted heteroalkynyl group as defined above. Thus -CH2-O-CH2-C ≡€- is an example of an unsubstituted heteroalkynylene. The phrase "substituted heteroalkynylene" refers to a divalent substituted heteroalkynyl group as defined above.
[0091] The phrase "unsubstituted heterocyclyl" refers to both aromatic and nonaromatic ring compounds including monocyclic, bicyclic, and polycyclic ring compounds such as, but not limited to, quinuclidyl, containing 3 or more ring members of which one or more is a heteroatom such as, but not limited to, N, O, and S. Although the phrase "unsubstituted heterocyclyl" includes condensed heterocyclic rings such as benzimidazolyl, it does not include heterocyclyl groups that have other groups such as alkyl or halo groups bonded to one of the ring members as compounds such as 2-methylbenzimidazolyl are substituted heterocyclyl groups. Examples of heterocyclyl groups include, but are not limited to: unsaturated 3 to 8 membered rings containing 1 to 4 nitrogen atoms such as, but not limited to pyrrolyl, pyrrolinyl, imidazolyl, pyrazolyl, pyridyl, dihydropyridyl, pyrimidyl, pyrazinyl, pyridazinyl, triazolyl (e.g., 4H-l,2,4-triazolyl, lH-l,2,3-triazolyl, 2H-l,2,3-triazolyl etc.), tetrazolyl, (e.g., lH-tetrazolyl, 2H tetrazolyl, etc.); saturated 3 to 8 membered rings containing 1 to 4 nitrogen atoms such as, but not limited to, pyrrolidinyl, imidazolidinyl, piperidinyl, piperazinyl; condensed unsaturated heterocyclic groups containing 1 to 4 nitrogen atoms such as, but not limited to, indolyl, isoindolyl, indolinyl, indolizinyl, benzimidazolyl, quinolyl, isoquinolyl, indazolyl, benzotriazolyl; unsaturated 3 to 8 membered rings containing 1 to 2 oxygen atoms and 1 to 3 nitrogen atoms such as, but not limited to, oxazolyl, isoxazolyl, oxadiazolyl (e.g., 1,2,4-oxadiazolyl, 1,3,4-oxadiazolyl, 1,2,5- oxadiazolyl, etc.); saturated 3 to 8 membered rings containing 1 to 2 oxygen atoms and 1 to 3 nitrogen atoms such as, but not limited to, morpholinyl; unsaturated condensed heterocyclic groups containing 1 to 2 oxygen atoms and 1 to 3 nitrogen atoms, for example, benzoxazolyl, benzoxadiazolyl, benzoxazinyl (e.g., 2H-l,4-benzoxazinyl, etc.); unsaturated 3 to 8 membered rings containing 1 to 3 sulfur atoms and 1 to 3 nitrogen atoms such as, but not limited to, thiazolyl, isothiazolyl, thiadiazolyl (e.g., 1,2,3-thiadiazolyl, 1,2,4-thiadiazolyl, 1,3,4-thiadiazolyl, 1,2,5-thiadiazolyl, etc.); saturated 3 to 8 membered rings containing 1 to 2 sulfur atoms and 1 to 3 nitrogen atoms such as, but not limited to, thiazolodinyl; saturated and unsaturated 3 to 8 membered rings containing 1 to 2 sulfur atoms such as, but not limited to, thienyl, dihydrodithiinyl, dihydrodithionyl, tetrahydrothiophene, tetrahydrothiopyran; unsaturated condensed heterocyclic rings containing 1 to 2 sulfur atoms and 1 to 3 nitrogen atoms such as, but not limited to, benzothiazolyl, benzothiadiazolyl, benzothiazinyl (e.g., 2H- 1,4-benzothiazinyl, etc.), dihydrobenzothiazinyl (e.g., 2H-3,4-dihydrobenzothiazinyl, etc.), unsaturated 3 to 8 membered rings containing oxygen atoms such as, but not limited to furyl; unsaturated condensed heterocyclic rings containing 1 to 2 oxygen atoms such as benzodioxolyl (e.g., 1,3-benzodioxoyl, etc.); unsaturated 3 to 8 membered rings containing an oxygen atom and 1 to 2 sulfur atoms such as, but not limited to, dihydrooxathiinyl; saturated 3 to 8 membered rings containing 1 to 3 oxygen atoms and 1 to 2 sulfur atoms such as 1,4- oxathiane; unsaturated condensed rings containing 1 to 2 sulfur atoms such as benzothienyl, benzodithiinyl; and unsaturated condensed heterocyclic rings containing an oxygen atom and 1 to 3 oxygen atoms such as benzoxathiinyl. Heterocyclyl group also include those described above in which one or more S atoms in the ring is double-bonded to one or two oxygen atoms (sulfoxides and sulfones). For example, heterocyclyl groups include tetrahydrothiophene, tetrahydrothiophene oxide, and tetrahydrothiophene 1,1 -dioxide. In some embodiments heterocyclyl groups contain 5 or 6 ring members. In other embodiments heterocyclyl groups include morpholine, piperazine, piperidine, pyrrolidine, imidazole, pyrazole, 1,2,3-triazole, 1,2,4-triazole, tetrazole, thiomorpholine, thiomorpholine in which the S atom of the thiomorpholine is bonded to one or more O atoms, pyrrole, homopiperazine, oxazolidin-2- one, pyrrolidin-2-one, oxazole, quinuclidine, thiazole, isoxazole, furan, and tetrahydrofuran.
[0092] The phrase "substituted heterocyclyl" refers to an unsubstituted heterocyclyl group as defined above in which one of the ring members is bonded to a non-hydrogen atom such as described above with respect to substituted alkyl groups and substituted aryl groups. Examples include, but are not limited to, 2-methylbenzimidazolyl, 5-methylbenzimidazolyl, 5-chlorobenzthiazolyl, 1 -methyl piperazinyl, and 2-chloropyridyl.
[0093] The phrase "unsubstituted heteroaryl" refers to unsubstituted aromatic heterocyclyl groups as defined above. Thus, unsubstituted heteroaryl groups include but are not limited to furyl, imidazolyl, oxazolyl, isoxazolyl, pyridinyl, benzimidazolyl, and benzothiazolyl. The phrase "substituted heteroaryl" refers to substituted aromatic heterocyclyl groups as defined above.
[0094] The phrase "unsubstituted heterocyclylalkyf ' refers to unsubstituted alkyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkyl group is replaced with a bond to a heterocyclyl group as defined above. For example, methyl (-CH3) is an unsubstituted alkyl group. If a hydrogen atom of the methyl group is replaced by a bond to a heterocyclyl group, such as if the carbon of the methyl were bonded to carbon 2 of pyridine (one of the carbons bonded to the N of the pyridine) or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkyl group.
[0095] The phrase "substituted heterocyclylalkyl" has the same meaning with respect to unsubstituted heterocyclylalkyl groups that substituted aralkyl groups have with respect to unsubstituted aralkyl groups. A substituted heterocyclylalkyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkyl group. [0096] The phrase "unsubstituted heterocyclylalkenyl" refers to unsubstituted alkenyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkenyl group is replaced with a bond to a heterocyclyl group as defined above. For example, vinyl is an unsubstituted alkenyl group. If a hydrogen atom of the vinyl group is replaced by a bond to a heterocyclyl group, such as if the carbon of the vinyl were bonded to carbon 2 of pyridine or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkenyl group.
[0097] The phrase "substituted heterocyclylalkenyl" has the same meaning with respect to unsubstituted heterocyclylalkenyl groups that substituted aralkenyl groups have with respect to unsubstituted aralkenyl groups. However, a substituted heterocyclylalkenyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkenyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkenyl group.
[0098] The phrase "unsubstituted heterocyclylalkynyl" refers to unsubstituted alkynyl groups as defined above in which a hydrogen or carbon bond of the unsubstituted alkynyl group is replaced with a bond to a heterocyclyl group as defined above. For example, acetylene is an unsubstituted alkynyl group. If a hydrogen atom of the acetylene group is replaced by a bond to a heterocyclyl group, such as if the carbon of the acetylene were bonded to carbon 2 of pyridine or carbons 3 or 4 of the pyridine, then the compound is an unsubstituted heterocyclylalkynyl group.
[0099] The phrase "substituted heterocyclylalkynyl" has the same meaning with respect to unsubstituted heterocyclylalkynyl groups that substituted aralkynyl groups have with respect to unsubstituted aralkynyl groups. A substituted heterocyclylalkynyl group also includes groups in which a non-hydrogen atom is bonded to a heteroatom in the heterocyclyl group of the heterocyclylalkynyl group such as, but not limited to, a nitrogen atom in the piperidine ring of a piperidinylalkynyl group.
[00100] The phrase "unsubstituted alkoxy" refers to a hydroxyl group (-OH) in which the bond to the hydrogen atom is replaced by a bond to a carbon atom of an otherwise unsubstituted alkyl group as defined above. [00101] The phrase "substituted alkoxy" refers to a hydroxyl group (-OH) in which the bond to the hydrogen atom is replaced by a bond to a carbon atom of an otherwise substituted alkyl group as defined above.
[00102] A "pharmaceutically acceptable salt" includes a salt with an inorganic base, organic base, inorganic acid, organic acid, or basic or acidic amino acid. Salts of inorganic bases include, for example, alkali metals such as sodium or potassium; alkaline earth metals such as calcium and magnesium or aluminum; and ammonia. Salts of organic bases include, for example, trimethylamine, triethylamine, pyridine, picoline, ethanolamine, diethanolamine, and triethanolamine. Salts of inorganic acids include for example, hydrochloric acid, hydroboric acid, nitric acid, sulfuric acid, and phosphoric acid. Salts of organic acids include for example, formic acid, acetic acid, trifluoroacetic acid, fumaric acid, oxalic acid, tartaric acid, maleic acid, citric acid, succinic acid, malic acid, methanesulfonic acid, benzenesulfonic acid, and p-toluenesulfonic acid. Salts of basic amino acids include, for example, arginine, lysine and ornithine. Acidic amino acids include, for example, aspartic acid and glutamic acid.
[00103] "Tautomers" refers to isomeric forms of a compound that are in equilibrium with each other. The concentrations of the isomeric forms will depend on the environment the compound is found in and may be different depending upon, for example, whether the compound is a solid or is in an organic or aqueous solution. For example, in aqueous solution, ketones are typically in equilibrium with their enol forms. Thus, ketones and their enols are referred to as tautomers of each other. As readily understood by one skilled in the art, a wide variety of functional groups and other structures may exhibit tautomerism, and all tautomers of compounds of Formulas I, II, and III are within the scope of the present invention.
[00104] The compounds according to the invention may be solvated, especially hydrated. Hydration may occur during manufacturing of the compounds or compositions comprising the compounds, or the hydration may occur over time due to the hygroscopic nature of the compounds.
[00105] Certain embodiments are derivatives referred to as prodrugs. The expression
"prodrug" denotes a derivative of a pharmaceutically or therapeutically active drug, e.g., esters and amides, wherein the derivative has an enhanced characteristic such as, for example, enhanced delivery and therapeutic value as compared to the drug and can be transformed into the drug by an enzymatic or chemical process. See, for example, R.E. Notari, Methods Enzymol. 112:309-323 (1985); N. Bodor, Drugs of the Future 6:165-182 (1981); H. Bundgaard, Chapter 1 in Design of Prodrugs (H. Bundgaard, ed.), Elsevier, New York (1985); and A. G. Gilman et al., Goodman And Gilman's The Pharmacological Basis of Therapeutics, 8th ed., McGraw-Hill (1990). Thus, the prodrug may be designed to alter the metabolic stability or transport characteristics of a drug, mask side effects or toxicity of a drug, improve the flavor of a drug, or to alter other characteristics or properties of a drug.
[00106] Compounds of the present invention include enriched or resolved optical isomers at any or all asymmetric atoms as are apparent from the depictions. Both racemic and diastereomeric mixtures, as well as the individual optical isomers can be isolated or synthesized so as to be substantially free of their enantiomeric or diastereomeric partners. All such stereoisomers are within the scope of the invention.
[00107] The term "carboxy protecting group" as used herein refers to a carboxylic acid protecting ester group employed to block or protect the carboxylic acid functionality while the reactions involving other functional sites of the compound are carried out. Carboxy protecting groups are disclosed in, for example, Greene, Protective Groups in Organic Synthesis, pp. 152-186, John Wiley & Sons, New York (1981), which is hereby incorporated herein by reference. In addition, a carboxy protecting group can be used as a prodrug, whereby the carboxy protecting group can be readily cleaved in vivo by, for example, enzymatic hydrolysis to release the biologically active parent. T. Higuchi and V. Stella provide a discussion of the prodrug concept in "Pro-drugs as Novel Delivery Systems", Vol. 14 of the A.C.S. Symposium Series, American Chemical Society (1975), which is hereby incorporated herein by reference. Such carboxy protecting groups are well known to those skilled in the art, having been extensively used in the protection of carboxyl groups in the penicillin and cephalosporin fields, as described in U.S. Patent Nos. 3,840,556 and 3,719,667, S. Kukolja, J. Am. Chem. Soc. 93:6267-6269 (1971), and G.E. Gutowski, Tetrahedron Lett. 21:1779-1782 (1970), the disclosures of which are hereby incorporated herein by reference. Examples of esters useful as prodrugs for compounds containing carboxyl groups can be found, for example, at pp. 14-21 in Bioreversible Carriers in Drug Design: Theory and Application (E.B. Roche, ed.), Pergamon Press, New York (1987), which is hereby incorporated herein by reference. Representative carboxy protecting groups are C1 to C8 alkyl (e.g., methyl, ethyl or tertiary butyl and the like); haloalkyl; alkenyl; cycloalkyl and substituted derivatives thereof such as cyclohexyl, cyclopentyl and the like; cycloalkylalkyl and substituted derivatives thereof such as cyclohexylmethyl, cyclopentylmethyl and the like; arylalkyl, for example, phenethyl or benzyl and substituted derivatives thereof such as alkoxybenzyl or nitrobenzyl groups and the like; arylalkenyl, for example, phenylethenyl and the like; aryl and substituted derivatives thereof, for example, 5-indanyl and the like; dialkylaminoalkyl (e.g., dimethylaminoethyl and the like); alkanoyloxyalkyl groups such as acetoxymethyl, butyryloxymethyl, valerytoxymethyl, isobutyryloxymethyl, isovaleryloxymethyl, l-(propionyloxy)-l -ethyl, l-(ρivaloyloxyl)-l -ethyl, 1 -methyl- 1- (propionyloxy)-l -ethyl, pivaloyloxymethyl, propionyloxymethyl and the like; cycloalkanoyloxyalkyl groups such as cyclopropylcarbonyloxymethyl, cyclobutylcarbonyloxymethyl, cyclopentylcarbonyloxymethyl, cyclohexylcarbonyloxymethyl and the like; aroyloxyalkyl, such as benzoyloxymethyl, benzoyloxyethyl and the like; arylalkylcarbonyloxyalkyl, such as benzylcarbonyloxymethyl, 2-benzylcarbonyloxyethyl and the like; alkoxycarbonylalkyl, such as methoxycarbonylmethyl, cyclohexyloxycarbonylmethyl, 1-methoxycarbonyl-l -ethyl, and the like; alkoxycarbonyloxyalkyl, such as metlioxycarbonyloxymethyl, t-butyloxycarbonyloxymethyl, 1-ethoxycarbonyloxy-l -ethyl, 1-cyclohexyloxycarbonyloxy-l -ethyl and the like; alkoxycarbonylaminoalkyl, such as t-butyloxycarbonylaminoinethyl and the like; alkylaminocarbonylaminoalkyl, such as methylaminocarbonylaminomethyl and the like; alkanoylaminoalkyl, such as acetylaminornethyl and the like; heterocycliccarbonyloxyalkyl, such as 4-methylpiperazinylcarbonyloxymethyl and the like; dialkylaminocarbonylalkyl, such as dimethylaminocarbonylmethyl, diethylaminocarbonylmethyl and the like; (5-(alkyl)-2- oxo-l,3-dioxolen-4-yl)alkyl, such as (5-t-butyl-2-oxo-l,3-dioxolen-4-yl)methyl and the like; and (5-phenyl-2-oxo-l,3-dioxolen-4-yl)alkyl, such as (5-ρhenyl-2-oxo-l,3-dioxolen-4- yl)methyl and the like.
[00108] The term "N-protecting group" or "N-protected" as used herein refers to those groups intended to protect the N-terminus of an amino acid or peptide or to protect an amino group against undesirable reactions during synthetic procedures. Commonly used N- protecting groups are disclosed in, for example, Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, New York (1981), which is hereby incorporated by reference. For example, N-protecting groups can comprise acyl groups such as formyl, acetyl, propionyl, pivaloyl, t-butylacetyl, 2-chloroacetyl, 2-bromoacetyl, trifluoro acetyl, trichloroacetyl, phthalyl, o-nitrophenoxyacetyl, a-chlorobutyryl, benzoyl, 4-chlorobenzoyl, 4- bromobenzoyl, 4-nitrobenzoyl, and the like; sulfonyl groups such as benzenesulfonyl, p- toluenesulfonyl and the like; carbamate forming groups such as benzyloxycarbonyl, p- chlorobenzyloxycarbonyl, p-methoxybenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2- nitrobenzyloxycarbonyl, p-bromobenzyloxycarbonyl, 3,4-dimethoxybenzyloxycarbonyl, 3,5- dimethoxybenzyloxycarbonyl, 2,4-dimethoxybenzyloxycarbonyl, 4- methoxybenzyloxycarbonyl, 2-nitro-4,5-dimethoxybenzyloxycarbonyL 3,4,5- trimethoxybenzyloxycarbonyl, l-(p-biρhenylyl)-l-methylethoxycarbonyl, α,α:-di methyl-3,5- dimethoxybenzyloxycarbonyl, benzhydryloxycarbonyl, t-butyloxycarbonyl, diisopropylmethoxycarbonyl, isopropyloxycarbonyl, ethoxycarbonyl, methoxycarbonyl, allyloxycarbonyl, 2,2,2,-trichloroethoxycarbonyl, phenoxycarbonyl, 4-nitrophenoxycarbonyl, fluorenyl-9-methoxycarbonyl, cyclopentyloxycarbonyl, adamantyloxycarbonyl, cyclohexyloxycarbonyl, phenylthiocarbonyl and the like; alkyl groups such as benzyl, triphenylmethyl, benzyloxymethyl and the like; and silyl groups such as trimethylsilyl and the like. In some embodiments N-protecting groups are formyl, acetyl, benzoyl, pivaloyl, t- butylacetyl, phenylsulfonyl, benzyl, 9-fluorenylrnethyloxycarbonyl (Fmoc), t-butyloxycarbonyl (Boc), and benzyloxycarbonyl (Cbz).
[00109] As used herein, "halo," "halogen" or "halide" refers to F, Cl, Br or I.
[00110] As used herein, the abbreviations for any protective groups, amino acids or other compounds, are, unless indicated otherwise, in accord with their common usage, recognized abbreviations, or the IUPAC-IUB Commission on Biochemical Nomenclature, Biochem. 11:942-944 (1972).
[00111] As used herein, "substantially pure" means sufficiently homogeneous to appear free of readily detectable impurities as determined by standard methods of analysis, such as thin layer chromatography (TLC), gel electrophoresis, and high performance liquid chromatography (HPLC), used by those of skill in the art to assess such purity, or sufficiently pure such that further purification would not detectably alter the physical and chemical properties, such as enzymatic and biological activities, of the substance. Substantially pure includes compositions in which the AA targeting agent or AA targeting compound forms the major component of the composition, such as constituting about 50%, about 60%, about 70%, about 80%, about 90%, or about 95% or more of the substances in the composition. Methods for purification of compounds to produce substantially chemically pure compounds are known to those of skill in the art. A substantially chemically pure compound may, however, be a mixture of stereoisomers. In such instances, further purification may increase the specific activity of the compound. However, AA targeting agents need not always be provided in a specific purified state. Partially purified compositions will have utility in certain embodiments and depending on the desired use. For example, purification methods that may yield a greater total recovery of AA-targeting agent may produce a lower degree of relative purification.
[00112] As used herein, "biological activity" refers to the in vivo activities of a compound, composition, or other mixture, or physiological responses that result upon in vivo administration of a compound, composition or other mixture. Biological activity thus encompasses therapeutic effects, diagnostic effects and pharmaceutical activity of such compounds, compositions, and mixtures. The term "biologically active" or "functional" when used as a modifier of invention AA targeting agent containing polypeptides or compositions thereof refers to a polypeptide that exhibits at least one activity that is characteristic of or similar to an AA targeting agent.
[00113] As used herein, "pharmacokinetics" refers to the concentration of an administered compound in the serum over time. Pharmacodynamics refers to the concentration of an administered compound in target and nontarget tissues over time and the effects on the target tissue (e.g., efficacy) and the non-target tissue (e.g., toxicity). Improvements in, for example, pharmacokinetics or pharmacodynamics can be designed for a particular targeting agent or biological agent, such as by using labile linkages or by modifying the chemical nature of any linker (e.g., changing solubility, charge, and the like).
[00114] As employed herein, the phrases "an effective amount" and "therapeutically effective amount" refer to an amount of an AA targeting agent or compound comprising an AA targeting agent that is useful or able to support an observable change in the level of one or more biological activity characteristic of an AA targeting agent, or a dose sufficient to impart a beneficial effect, e.g., an amelioration of a symptom on the recipient thereof. The specific therapeutically effective dose level for any particular subject will depend upon a variety of factors including the symptom or disorder being treated, the severity of the symptom or disorder, the activity of the specific compound, the route of administration, the rate of clearance of the compound, the duration of treatment, the drugs used in combination or coincident with the compound, the age, body weight, sex, diet, and general health of the subject, and like, as well as other factors well known in the medical arts and sciences. A therapeutically effective amount can be an amount of AA targeting compound sufficient to produce a measurable inhibition of angiogenesis in the tissue being treated, i.e., an angiogenesis-inhibiting amount. Inhibition of angiogenesis can be measured in situ by immunohistochemistry, or by other methods known to one skilled in the art. Various general considerations taken into account in determining the "therapeutically effective amount" are known to those of skill in the art and are described, e.g., in Gilman, A.G., et al., Goodman And Gilman's The Pharmacological Basis of Therapeutics, 8th ed., McGraw-Hill (1990); and Remington's Pharmaceutical Sciences, 17th ed., Mack Publishing Co., Easton, PA (1990).
[00115] In one aspect, the present invention provides various targeting compounds in which AA targeting agents are covalently linked to a combining site of an antibody.
[00116] In another aspect, the present invention includes methods of altering at least one physical or biological characteristic of an AA targeting agent. The methods include covalently linking an AA targeting agent to a combining site of an antibody, either directly or though a linker. Characteristics of an AA targeting agent that may be modified include, but are not limited to, binding affinity, susceptibility to degradation (e.g., by proteases), pharmacokinetics, pharmacodynamics, immunogenicity, solubility, lipophilicity, hydrophilicity, hydrophobicity, stability (either more or less stable, as well as planned degradation), rigidity, flexibility, modulation of antibody binding, and the like. Also, the biological potency of a particular AA targeting agent may be increased by the addition of the effector function(s) provided by the antibody. For example, an antibody provides effector functions such as complement mediated effector functions. Without wishing to be bound by any theory, the antibody portion of an AA targeting compound may generally extend the half- life of a smaller sized AA targeting agent in vivo. Thus, in one aspect, the invention provides a method for increasing the effective circulating half-life of an AA targeting agent.
[00117] In another aspect, the present invention provides methods for modulating the binding activity of an antibody by covalently attaching an AA targeting agent to a combining site of the antibody. Although not wishing to be bound by any theory, substantially reduced antibody binding to an antigen may result from the linked AA targeting agent(s) sterically hindering the antigen from contacting the antibody combining site. Alternatively, substantially reduced antigen binding may result if the amino acid side chain of the antibody combining site modified by covalent linkage is important for binding to the antigen. By contrast, substantially increased antibody binding to an antigen may result when a linked AA targeting agent(s) does not sterically hinder the antigen from contacting the antibody combining site and/or when the amino acid side chain of the antibody combining site modified by covalent linkage is not important for binding to the antigen.
[00118] In another aspect, the present invention includes methods of modifying a combining site of an antibody to generate binding specificity for the thrombospondin binding cognate. Such methods include covalently linking a reactive amino acid side chain in a combining site of the antibody to a chemical moiety on a linker of an AA targeting agent- linker compound as described herein where an AA targeting agent is based upon a thrombospondin peptide. The chemical moiety of the linker is sufficiently distanced from the AA targeting agent so that an AA targeting agent can bind its cognate when an AA targeting agent-linker compound is covalently linked to an antibody combining site. Typically, the antibody will not be considered specific for the target molecule. In certain embodiments, an antibody prior to covalent linking would have an affinity for the thrombospondin binding cognate of less than about 1 x 10"5 moles/liter. However, after the antibody is covalently linked to the AA targeting agent-linker compound, the modified antibody preferably has an affinity for the target molecule of at least about 1 x lO'6 moles/liter, alternatively, at least about 1 x 10"7 moles/liter, alternatively, at least 1 x 10"8 moles/liter, alternatively at least 1 x 10~9 moles/liter, or alternatively, at least about 1 x 10"10 moles/liter.
AA Targeting Agents
[00119] An AA targeting agent is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID NO:4); RI-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5); R^Sar-Gly-Val-CD-alloIlej-Thr-Cα-Ally-G^-Ile-Arg-Pro-R3 (SEQ ID NO:6);
R1-Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Tlir-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R1-Sar-Gly-Val-(D-Ile)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 17); wherein
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NH(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
R3 is COOH5 C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH35 C(O)NHCH(CH3)CH2CH35 C(O)NHC6H5, C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate.
[00120] An AA targeting compound can be prepared using techniques well known in the art. Typically, synthesis of the peptidyl AA targeting agent is the first step and is carried out as described herein. The targeting agent is then derivatized for linkage to a connecting component (the linker), which is then combined with the antibody. One of skill in the art will readily appreciate that the specific synthetic steps used depend upon the exact nature of the three components. Thus, AA targeting agent — linker conjugates and AA targeting compounds described herein can be readily synthesized.
[00121] AA targeting agent peptides may be synthesized by many techniques that are known to those skilled in the art. For solid phase peptide synthesis, a summary of exemplary techniques may be found in Chemical Approaches to the Synthesis of Peptides and Proteins (Williams et al., eds.), CRC Press, Boca Raton, FL (1997).
[00122] Typically, the desired peptidic AA targeting agent is synthesized sequentially on solid phase according to procedures well known in the art. See, e.g., U.S. Patent Application No. 2003/0045477). The linker may be attached to the peptide in part or in full on the solid phase, or may be added using solution phase techniques after the removal of the peptide from the resin (see FIGURES 6A and 6B). For example, an N-protected amino and carboxylic acid-containing linking moiety may be attached to a resin such as 4-hydroxymethyl- phenoxymethyl-poly(styrene-l% divinylbenzene). The N-protecting group may be removed by the appropriate acid (e.g., TFA for Boc) or base (e.g., piperidine for Fmoc), and the peptide sequence developed in the normal C-terminus to N-terminus fashion (see FIGURE 6A). Alternatively, the peptide sequence may be synthesized first and the linker added to the N-terminal amino acid residue last (see FIGURE 6B). Yet another method entails deprotecting an appropriate side chain during synthesis and derivatizing with a suitably reactive linker. For example, a lysine side chain may be deprotected and reacted with a linker having an active ester. Alternatively, an amino acid derivative with a suitably protected linker moiety already attached to the side chain (see FIGURE 6B) or, in some cases, the alpha-amino nitrogen, may be added as part of the growing peptide sequence.
[00123] At the end of the solid phase synthesis, the targeting agent-linker conjugate is removed from the resin and deprotected, either in succession or in a single operation. Removal of the targeting agent-linker conjugate and deprotection can be accomplished in a single operation by treating the resin-bound peptide-linker conjugate with a cleavage reagent, for example, trifluoroacetic acid containing scavengers such as thianisole, water, or ethanedithiol. After deprotection and release of the targeting agent, further derivatization of the targeting agent peptide may be carried out.
[00124] The fully deprotected targeting agent-linker conjugate is purified by a sequence of chromatographic steps employing any or all of the following types: ion exchange on a weakly basic resin in the acetate form; hydrophobic adsorption chromatography on underivatized polystyrene-divinylbenzene (e.g., AMBERLITE XAD); silica gel adsorption chromatography; ion exchange chromatography on carboxymethylcellulose; partition chromatography, e.g., on SEPHADEX G-25, LH-20 or countercurrent distribution; high performance liquid chromatography (HPLC), especially reverse-phase HPLC on octyl- or octadecylsilyl-silica bonded phase column packing.
Antibodies
[00125] "Antibody" as used herein includes polypeptide molecules comprising heavy and/or light chains which have immunoreactive activity. Antibodies include immunoglobulins which are the product of B cells and variants thereof, as well as the T cell receptor (TcR) which is the product of T cells and variants thereof. An immunoglobulin is a protein comprising one or more polypeptides substantially encoded by the immunoglobulin kappa and lambda, alpha, gamma, delta, epsilon and mu constant region genes, as well as myriad immunoglobulin variable region genes. Light chains are classified as either kappa or lambda. Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, which in turn define the immunoglobulin classes, IgG, IgM, IgA, IgD, and IgE, respectively. Subclasses of heavy chains are also known. For example, IgG heavy chains in humans can be any of IgGl, IgG2, IgG3, and IgG4 subclasses.
[00126] A typical immunoglobulin structural unit is known to comprise a tetramer. Each tetramer is composed of two identical pairs of polypeptide chains, each pair having one "light" (about 25 kD) and one "heavy" chain (about 50-70 kD). The N-terminus of each chain defines a variable region of about 100 to 110 or more amino acids primarily responsible for antigen recognition. The terms variable light chain (VL) and variable heavy chain (VH) refer to these light and heavy chains respectively. The amino acids of an antibody may be naturally or nonnaturally occurring.
[00127] Antibodies that contain two combining sites are bivalent in that they have two complementarity or antigen recognition sites. A typical natural bivalent antibody is an IgG. Although vertebrate antibodies generally comprise two heavy chains and two light chains, heavy chain only antibodies are also known. See Muyldermans et al., TRENDS in Biochem. Sci. 26(4):230-235 (1991). Such antibodies are bivalent and are formed by the pairing of heavy chains. Antibodies may also be multi-valent, as in the case of dimeric forms of IgA and the pentameric IgM molecule. Antibodies also include hybrid antibodies wherein the antibody chains are separately homologous with referenced mammalian antibody chains. One pair of heavy and light chain has a combining site specific to one antigen and the other pair of heavy and light chains has a combining site specific to a different antigen. Such antibodies are referred to as bi-specific because they are able to bind two different antigens at the same time. Antibodies may also be univalent, such as, for example, in the case of Fab or Fab' fragments.
[00128] Antibodies exist as full length intact antibodies or as a number of well- characterized fragments produced by digestion with various peptidases or chemicals. Thus, for example, pepsin digests an antibody below the disulfide linkages in the hinge region to produce F(ab')2, a dimer of Fab which itself is a light chain joined to VR-CH1 by a disulfide bond. F(ab')2 may be reduced under mild conditions to break the disulfide linkage in the hinge region, thereby converting the F(ab')2 dimer into a Fab' monomer. The Fab' monomer is essentially a Fab fragment with part of the hinge region (see, e.g., Fundamental Immunology (W. E. Paul, ed.), Raven Press, N. Y. (1993) for a more detailed description of other antibody fragments). As another example, partial digestion with papain can yield a monovalent Fab/c fragment. See MJ. Glennie et al., Nature 295:712-714 (1982). While various antibody fragments are defined in terms of the digestion of an intact antibody, one of skill in the art will appreciate that any of a variety of antibody fragments may be synthesized de novo either chemically or by utilizing recombinant DNA methodology. Thus, the term antibody as used herein also includes antibody fragments produced by the modification of whole antibodies, synthesized de novo, or obtained from recombinant DNA methodologies. One skilled in the art will recognize that there are circumstances in which it is advantageous to use antibody fragments rather than whole antibodies. For example, the smaller size of the antibody fragments allows for rapid clearance and may lead to improved access to solid tumors.
[00129] Recombinant antibodies may be conventional full length antibodies, hybrid antibodies, heavy chain antibodies, antibody fragments known from proteolytic digestion, antibody fragments such as Fv or single chain Fv (scFv), single domain fragments such as VH or VL, diabodies, domain deleted antibodies, minibodies, and the like. An Fv antibody is about 50 kD in size and comprises the variable regions of the light and heavy chain. The light and heavy chains may be expressed in bacteria where they assemble into an Fv fragment. Alternatively, the two chains can be engineered to form an interchain disulfide bond to give a dsFv. A single chain Fv ("scFv") is a single polypeptide comprising VH and VL sequence domains linked by an intervening linker sequence, such that when the polypeptide folds the resulting tertiary structure mimics the structure of the antigen binding site. See J.S. Huston et al., Proc. Nat. Acad. Sci. U.S.A. 85:5879-5883 (1988). One skilled in the art will recognize that depending on the particular expression method and/or antibody molecule desired, appropriate processing of the recombinant antibodies may be performed to obtain a desired reconstituted or reassembled antibody. See, e.g., Vallejo and Rinas, Biomed Central., available at world wide web URL microbialcellfactories.com/content/3/1/11.
[00130] Single domain antibodies are the smallest functional binding units of antibodies (approximately 13 kD in size), corresponding to the variable regions of either the heavy VH or light VL chains. See U.S. Patent No. 6,696,245, WO04/058821, WO04/003019 and WO03/002609. Single domain antibodies are well expressed in bacteria, yeast, and other lower eukaryotic expression systems. Domain deleted antibodies have a domain, such as CH2, deleted relative to the full length antibody. In many cases such domain deleted antibodies, particularly CH2 deleted antibodies, offer improved clearance relative to their full length counterparts. Diabodies are formed by the association of a first fusion protein comprising two VH domains with a second fusion protein comprising two VL domains. Diabodies, like full length antibodies, are bivalent and may be bi-specific. Minibodies are fusion proteins comprising a VH, VL, or scFv linked to CH3, either directly or via an intervening IgG hinge. See T. Olafsen et al., Protein Eng. Des. SeI. 17:315-323 (2004). Minibodies, like domain deleted antibodies, are engineered to preserve the binding specificity of full-length antibodies but with improved clearance due to their smaller molecular weight. [00131] The T cell receptor (TcR) is a disulfide linked heterodimer composed of two chains. The two chains are generally disulfide-bonded just outside the T cell plasma membrane in a short extended stretch of amino acids resembling the antibody hinge region. Each TcR chain is composed of one antibody-like variable domain and one constant domain. The full TcR has a molecular mass of about 95 kD, with the individual chains varying in size from 35 to 47 kD. Also encompassed within the meaning of TcR are portions of the receptor, such as, for example, the variable region, which can be produced as a soluble protein using methods well known in the art. For example, U.S. Patent No. 6,080,840 and A.E. Slanetz and AX. Bothwell, Eur. J. Immunol. 21:179-183 (1991) describe a soluble T cell receptor prepared by splicing the extracellular domains of a TcR to the glycosyl phosphatidylinositol (GPI) membrane anchor sequences of Thy- 1. The molecule is expressed in the absence of CD3 on the cell surface, and can be cleaved from the membrane by treatment with phosphatidylinositol specific phospholipase C (PI-PLC). The soluble TcR also may be prepared by coupling the TcR variable domains to an antibody heavy chain CH2 or CH3 domain, essentially as described in U.S. Patent No. 5,216,132 and G.S. Basi et al., J. Immunol. Methods 155:175-191 (1992), or as soluble TcR single chains, as described by E.V. Shusta et al., Nat. Biotechnol. 18:754-759 (2000) or P.D. Holler et al., Proc. Natl. Acad. Sci. U.S.A. 97:5387-5392 (2000). Certain embodiments of the invention use TcR "antibodies" as a soluble antibody. The combining site of the TcR can be identified by reference to CDR regions and other framework residues using the same methods discussed above for antibodies.
[00132] The combining site refers to the part of an antibody molecule that participates in antigen binding. The antigen binding site is formed by amino acid residues of the N-terminal variable ("V") regions of the heavy ("H") and light ("L") chains. The antibody variable regions comprise three highly divergent stretches referred to as "hypervariable regions" or "complementarity determining regions" (CDRs), which are interposed between more conserved flanking stretches known as "framework regions" (FRs). The three hypervariable regions of a light chain (LCDRl, LCDR2, and LCDR3) and the three hypervariable regions of a heavy chain (HCDRl, HCDR2, and HCDR3) are disposed relative to each other in three dimensional space to form an antigen binding surface or pocket, hi heavy-chain antibodies or VH domains, the antigen binding site is formed by the three hypervariable regions of the heavy chains, hi VL domains, the antigen binding site is formed by the three hypervariable regions of the light chain. [00133] The identity of the amino acid residues in a particular antibody that make up a combining site can be determined using methods well known in the art. For example, antibody CDRs may be identified as the hypervariable regions originally defined by Kabat et al. See E. A. Kabat et al., Sequences of Proteins of Immunological Interest, 5th ed., Public Health Service, NIH, Washington D.C. (1992). The positions of the CDRs may also be identified as the structural loop structures originally described by Chothia and others. See, e.g., C. Chothia and A.M. Lesk, J. MoI. Biol. 196:901-917 (1987); C. Chothia et al., Nature 342:877-883 (1989); and A. Tramontano et al., J. MoI. Biol. 215:175-182 (1990). Other methods include the "AbM definition," which is a compromise between Kabat and Chothia and is derived using Oxford Molecular's AbM antibody modeling software (now Accelrys), or the "contact definition" of CDRs set forth in R.M. MacCallum et al., J. MoI. Biol. 262:732-745 (1996). Table 2 identifies CDRs based upon various known definitions:
Table 2: CDR definitions
Figure imgf000045_0001
General guidelines by which one may identify the CDRs in an antibody from sequence alone are as follows:
LCDRl:
Start - Approximately residue 24. Residue before is always a Cys.
Residue after is always a Trp, typically followed by Tyr-Gln, but also followed by Leu-Gin, Phe-Gln, or Tyr-Leu. Length is 10 to 17 residues.
LCDR2:
Start - 16 residues after the end of Ll. Sequence before is generally Ile-Tyr, but also may be Val-Tyr, Ile-Lys, or Ile-Phe. Length is generally 7 residues.
LCDR3:
Start - 33 residues after end of L2. Residue before is a Cys. Sequence after is Phe-Gly-X-Gly. Length is 7 to 11 residues.
HCDRl:
Start - approximately residue 26, four residues after a Cys under Chothia/AbM definitions; start is 5 residues later under Kabat definition.
Sequence before is Cys-X-X-X.
Residue after is a Trp, typically followed by VaI, but also followed by He or Ala.
Length is 10 to 12 residues under AbM definition; Chothia definition excludes the last 4 residues.
HCDR2:
Start -15 residues after the end of Kabat /AbM definition of CDR-Hl. Sequence before is typically Leu-Glu-Trp-Ile-Gly, but a number of variations are possible. Sequence after is Lys/Arg-Leu/IleA^al/Phe/Thr/Ala-Thr/Ser/Ile/Ala. Length is 16 to 19 residues under Kabat definition; AbM definition excludes the last 7 residues.
HCDR3:
Start -33 residues after end of CDR-H2 (two residues after a Cys). Sequence before is Cys-X-X (typically Cys-Ala-Arg). Sequence after is Trp-Gly-X-Gly. Length is 3 to 25 residues.
[00134] The identity of the amino acid residues in a particular antibody that are outside the CDRs, but nonetheless make up part of the combining site by having a side chain that is part of the lining of the combining site (i.e., that is available to linkage through the combining site), can be determined using methods well known in the art, such as molecular modeling and X-ray crystallography. See, e.g., L. Riechmaπα et al., Nature 332:323-327 (1988). [00135] As discussed, antibodies that can be used in preparing antibody-based AA targeting compounds require a reactive side chain in the antibody combining site. A reactive side chain may be present naturally or may be placed in an antibody by mutation. The reactive residue of the antibody combining site may be associated with the antibody, such as when the residue is encoded by nucleic acid present in the lymphoid cell first identified to make the antibody. Alternatively, the amino acid residue may arise by purposely mutating the DNA so as to encode the particular residue (see, e.g., WO 01/22922 to Meares et al.). The reactive residue may be a non-natural residue arising, for example, by biosynthetic incorporation using a unique codon, tRNA, and aminoacyl-tRNA as discussed herein. In another approach, the amino acid residue or its reactive functional groups (e.g., a nucleophilic amino group or sulfhydryl group) may be attached to an amino acid residue in the antibody combining site. Thus, covalent linkage with the antibody occurring "through an amino acid residue in a combining site of an antibody" as used herein means that linkage can be directly to an amino acid residue of an antibody combining site or through a chemical moiety that is linked to a side chain of an amino acid residue of an antibody combining site.
[00136] Catalytic antibodies are one source of antibodies with combining sites that comprise one or more reactive amino acid side chains. Such antibodies include aldolase antibodies, beta lactamase antibodies, esterase antibodies, amidase antibodies, and the like.
[00137] One embodiment comprises an aldolase antibody such as the mouse monoclonal antibody mAb 38C2 or mAb 33F12, as well as suitably humanized and chimeric versions of such antibodies. Mouse mAb 38C2 has a reactive lysine near to but outside HCDR3, and is the prototype of a new class of catalytic antibodies that were generated by reactive immunization and mechanistically mimic natural aldolase enzymes. See CF. Barbas 3τd et al., Science 278:2085-2092 (1997)). Other aldolase catalytic antibodies that may be used include the antibodies produced by the hybridoma 85A2, having ATCC accession number PTA-1015; hybridoma 85C7, having ATCC accession number PTA-1014; hybridoma 92F9, having ATCC accession number PTA-1017; hybridoma 93F3, having ATCC accession number PTA-823; hybridoma 84G3, having ATCC accession number PTA-824; hybridoma 84Gl 1, having ATCC accession number PTA-1018; hybridoma 84H9, having ATCC accession number PTA- 1019; hybridoma 85H6, having ATCC accession number PTA-825; hybridoma 90G8, having ATCC accession number PTA-1016. Through a reactive lysine, these antibodies catalyze aldol and retro-aldol reactions using the enamine mechanism of natural aldolases. See, e.g., J. Wagner et al., Science 270:1797-1800 (1995); CF. Barbas 3rd et al., Science 278:2085-2092 (1997); G. Zhong et al., Angew. Chem. Int. Ed. Engl. 38:3738-3741 (1999); A. Karlstrom et al., Proc. Natl. Acad. Sci. U.S.A., 97:3878-3883 (2000). Aldolase antibodies and methods of generating aldolase antibodies are disclosed in U.S. Patents Nos. 6,210,938, 6,368,839, 6,326,176, 6,589,766, 5,985,626, and 5,733,757.
[00138] AA targeting compounds may also be formed by linking an AA targeting agent to a reactive cysteine, such as those found in the combining sites of thioesterase and esterase catalytic antibodies. Suitable thioesterase catalytic antibodies are described by K.D. Janda et al., Proc. Natl. Acad. Sci. U.S.A. 91:2532-2536 (1994). Suitable esterase antibodies are described by P. Wirsching et al., Science 270:1775-1782 (1995). Reactive amino acid- containing antibodies may be prepared by means well known in the art, including mutating an antibody combining site residue to encode for the reactive amino acid or chemically derivatizing an amino acid side chain in an antibody combining site with a linker that contains the reactive group.
[00139] Antibodies suitable for use herein may be obtained by conventional immunization, reactive immunization in vivo, or by reactive selection in vitro, such as with phage display. Antibodies may also be obtained by hybridoma or cell fusion methods or in vitro host cells expression system. Antibodies may be produced in humans or in other animal species. Antibodies from one species of animal may be modified to reflect another species of animal. For example, human chimeric antibodies are those in which at least one region of the antibody is from a human immunoglobulin. A human chimeric antibody is typically understood to have variable region amino acid sequences homologous to a non-human animal, e.g., a rodent, with the constant region having amino acid sequence homologous to a human immunoglobulin In contrast, a humanized antibody uses CDR sequences from a non- human antibody with most or all of the variable framework region sequence and all the constant region sequence from a human immunoglobulin. Chimeric and humanized antibodies may be prepared by methods well known in the art including CDR grafting approaches (see, e.g., N. Hardman et al., Int. J. Cancer 44:424-433 (1989); C. Queen et al., Proc. Natl. Acad. Sci. U.S.A. 86:10029-10033 (1989)), chain shuffling strategies (see, e.g., Rader et al., Proc. Natl. Acad. Sci. U.S.A. 95:8910-8915 (1998), genetic engineering molecular modeling strategies (see, e.g., M.A. Roguska et al., Proc. Natl. Acad. Sci. U.S.A. 91 :969-973 (1994)), and the like. [00140] Methods for humanizing non-human antibodies have been described in the art. Preferably, a humanized antibody has one or more amino acid residues introduced into it from a source which is non-human. These non-human amino acid residues are often referred to as "import" residues, which are typically taken from an "import" variable domain. Humanization can be essentially performed following the methods of Winter and colleagues (see, e.g., P.T. Jones et al., Nature 321:522-525 (1986); L. Riechmann et al., Nature 332:323- 327 (1988); M. Verhoeyen et al., Science 239:1534-1536 (1988)) by substituting hypervariable region sequences for the corresponding sequences of a human antibody. Accordingly, such "humanized" antibodies are chimeric antibodies wherein substantially less than an intact human variable domain has been substituted by the corresponding sequence from a non-human species. In practice, humanized antibodies are typically human antibodies in which some hypervariable region residues and possibly some framework (FR) residues are substituted by residues from analogous sites in rodent antibodies.
[00141] The choice of human variable domains, both light and heavy, to be used in making humanized antibodies is very important to reduce antigenicity and human anti-mouse antibody (HAMA) response when the antibody is intended for human therapeutic use. According to the so-called "best-fit" method, the human variable domain utilized for humanization is selected from a library of known domains based on a high degree of homology with the rodent variable region of interest (MJ. Sims et al., J. Immunol., 151:2296-2308 (1993); M. Chothia and A.M. Lesk, J. MoI. Biol. 196:901-917 (1987)). Another method uses a framework region derived from the consensus sequence of all human antibodies of a particular subgroup of light or heavy chains. The same framework may be used for several different humanized antibodies (see, e.g., P. Carter et al., Proc. Natl. Acad. Sci. U.S.A. 89:4285-4289 (1992); L.G. Presta et al., J. Immunol., 151:2623-2632 (1993)).
[00142] It is further important that antibodies be humanized with retention of high linking affinity for the Z group. To achieve this goal, according to one method, humanized antibodies are prepared by analysis of the parental sequences and various conceptual humanized products using three-dimensional models of the parental and humanized sequences. Three-dimensional immunoglobulin models are commonly available and are familiar to those skilled in the art. Computer programs are available which illustrate and display probable three-dimensional conformational structures of selected candidate immunoglobulin sequences. Inspection of these displays permits analysis of the likely role of the residues in the functioning of the candidate immunoglobulin sequence with respect to linking to the Z group. In this way, FR residues can be selected and combined from the recipient and import sequences so that the desired antibody characteristic, such as increased affinity for the target antigen(s), is achieved.
[00143] Various forms of humanized murine aldolase antibodies are contemplated. One embodiment uses the humanized aldolase catalytic antibody h38c2 IgGl or h38c2 Fab with human constant domains Cκ and Cγll. C. Rader et al., J. MoI. Bio. 332:889-899 (2003) discloses the gene sequences and vectors that may be used to produce h38c2 Fab and h38c2 IgGl. Human germline Vk gene DPK-9 (SEQ ID NO:36) and human Jk gene JK4 (SEQ ID NO:38) were used as frameworks for the humanization of the kappa light chain variable domain of m38c2, and human germline gene DP-47 (SEQ ID NO:37) and human JH gene JH4 (SEQ ID NO: 39) were used as frameworks for the humanization of the heavy chain variable domain of m38c2. FIGURE 7 A illustrates a sequence alignment between the variable light and heavy chains in m38c2 (SEQ ID NOs: 32 and 33, respectively), h38c2 (SEQ ID NOs: 34 and 35, respectively), and human germlines. h38c2 may utilize IgGl, IgG2, IgG3, or IgG4 constant domains, including any of the allotypes thereof. FIGURE 7B illustrates one embodiment of h38c2 IgGl using the Glm(f) allotype. The light and heavy chain amino acid sequences of this h38c2 IgGl are set forth in SEQ ID NOs:40 and 41, respectively. In certain embodiments of AA targeting compounds of formula II or III wherein Antibody is h38c2 IgGl with the Glm(f) allotype, Z binds to the side chain of the lysine residue at position 99 of SEQ ID NO:41. This residue is denoted by bold print in FIGURE 7B. Another embodiment uses a chimeric antibody comprising the variable domains (VL and VH) of h38c2 and the constant domains from an IgGl, IgG2, IgG3, or IgG4.
[00144] Various forms of humanized aldolase antibody fragments are also contemplated. One embodiment uses h38c2 F(ab')2. h38c2 F(ab')2 may be produced by the proteolytic digestion of h38c2 IgGl . Another embodiment uses an h38c2 scFv comprising the VL and VH domains from h38c2 which are optionally connected by the intervening linker (Gly4Ser)3.
[00145] As an alternative to humanization, human antibodies can be generated. For example, it is now possible to produce transgenic animals (e.g., mice) that are capable, upon immunization (or reactive immunization in the case of catalytic antibodies) of producing a full repertoire of human antibodies in the absence of endogenous immunoglobulin production. For example, it has been described that the homozygous deletion of the antibody heavy-chain joining region (J#) gene in chimeric and germ-line immunoglobulin gene array into such germ-line mutant mice will result in the production of human antibodies upon antigen challenge. See, e.g., B.D. Cohen et al, Clin. Cancer Res. 11:2063-2073 (2005); JX. Teeling et al., Blood 104:1793-1800 (2004); N. Lonberg et al., Nature 368:856-859 (1994); A. Jakobovits et al., Proc. Natl. Acad. Sci. U.S.A. 90:2551-2555 (1993); A. Jakobovits et al., Nature 362:255-258 (1993); M. Bruggemann et al., Year Immunol. 7:33-40 (1993); L.D. Taylor, et al. Nucleic Acids Res. 20:6287-6295 (1992); M. Bruggemann et al., Proc. Natl. Acad. Sci. U.S.A. 86:6709-6713 (1989)); and WO 97/17852.
[00146] Alternatively, phage display technology (see, e.g., J. McCafferty et al., Nature 348:552-553 (1990); HJ. de Haard et al., J Biol Chem 274, 18218-18230 (1999); and A.Kanppik et al., J MoI Biol, 296, 57-86 (2000)) can be used to produce human antibodies and antibody fragments in vitro using immunoglobulin variable (V) domain gene repertoires from unimmunized donors. According to this technique, antibody V domain genes are cloned in-frame into either a major or minor coat protein gene of a filamentous bacteriophage, such as Ml 3 or fd, and displayed as functional antibody fragments on the surface of the phage particle. Because the filamentous particle contains a single-stranded DNA copy of the phage genome, selections based on the functional properties of the antibody also result in selection of the gene encoding the antibody exhibiting those properties. Thus, the phage mimics some of the properties of the B-cell. Phage display can be performed in a variety of formats, and is reviewed in, e.g., K.S. Johnson and DJ. Chiswell, Curr. Opin. Struct. Biol. 3:564-571 (1993). Several sources of V-gene segments can be used for phage display. T. Clackson et al., Nature, 352:624-628 (1991) isolated a diverse array of anti- oxazolone antibodies from a small random combinatorial library of V genes derived from the spleens of immunized mice. A repertoire of V genes from unimmunized human donors can be constructed and antibodies to a diverse array of antigens (including self-antigens) can be isolated essentially following the techniques described by J.D. Marks et al., J. MoI. Biol. 222:581-597 (1991) or A.D. Griffiths et al., EMBO J. 12:725-734 (1993). See also U.S. Pat. Nos. 5,565,332 and 5,573,905; and L.S. Jespers et al., Biotechnology 12:899-903 (1994).
[00147] As indicated above, human antibodies may also be generated by in vitro activated B cells. See, e.g., U.S. Patent Nos. 5,567,610 and 5,229,275; and C.A.K. Borrebaeck et al., Proc. Natl. Acad. Sci. U.S.A. 85:3995-3999 (1988). [00148] Amino acid sequence modification(s) of the antibodies described herein are contemplated. For example, it may be desirable to improve the binding affinity and/or other biological properties of the antibody. Amino acid sequence variants of an antibody are prepared by introducing appropriate nucleotide changes into the antibody nucleic acid, or by peptide synthesis. Such modifications include, for example, deletions from, insertions into, and/or substitutions of residues within the amino acid sequences of the antibody. Any combination of deletion, insertion, and substitution is made to arrive at the final construct, provided that the final construct possesses the desired characteristics. The amino acid changes also may alter post-translational processes of the antibody, such as changing the number or position of glycosylation sites.
[00149] A useful method for identification of certain residues or regions of an antibody that are preferred locations for mutagenesis is called "alanine scanning mutagenesis," as described in B.C. Cunningham and J.A. Wells, Science 244:1081-1085 (1989). Here, a residue or group of target residues are identified (e.g., charged residues such as Arg, Asp, His, Lys, and GIu) and replaced by a neutral or negatively charged amino acid (most preferably Ala or Polyalanine) to affect the interaction of the amino acids with the Z group of the linker. Those amino acid locations demonstrating functional sensitivity to the substitutions are then refined by introducing further or other variants at, or for, the sites of substitution. Thus, while the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined. For example, to analyze the performance of a mutation at a given site, alanine scanning or random mutagenesis is conducted at the target codon or region and the expressed antibody variants are screened for the ability to form a covalent bond with Z.
[00150] Amino acid sequence insertions include amino- and/or carboxyl-terminal fusions ranging in length from one residue to polypeptides containing a hundred or more residues, as well as intrasequence insertions of single or multiple amino acid residues. Examples of terminal insertions include an antibody with an N-terminal methionyl residue or the antibody fused to a cytotoxic polypeptide. Other insertional variants of an antibody molecule include the fusion to the N- or C-terminus of an anti-antibody to an enzyme or a polypeptide which increases the serum half-life of the antibody. [00151] Another type of variant is an amino acid substitution variant. These variants have at least one amino acid residue in an antibody molecule replaced by a different residue. The sites of greatest interest for substitutional mutagenesis include the hypervariable regions, but FR alterations are also contemplated. Conservative substitutions are shown in Table 3 below under the heading of "preferred substitutions." If such substitutions result in a change in biological activity, then more substantial changes, denominated "exemplary substitutions" as further described below in reference to amino acid classes, may be introduced and the products screened.
[00152] Substantial modifications in the biological properties of the antibody are accomplished by selecting substitutions that differ significantly in their effect on maintaining (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation, (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain. Naturally occurring residues are divided into groups based on common side-chain properties:
(1) hydrophobic: Me, Met, Ala, VaI, Leu, He;
(2) neutral hydrophilic: Cys, Ser, Thr;
(3) acidic: Asp, GIu;
(4) basic: Asn, GIn, His, Lys, Arg;
(5) residues that influence chain orientation: GIy, Pro; and
(6) aromatic: Trp, Tyr, Phe.
Non-conservative substitutions will entail exchanging a member of one of these classes for a member of another class.
[00153] Any cysteine residue not involved in maintaining the proper conformation of the antibody may be substituted, generally with serine, to improve the oxidative stability of the molecule and prevent aberrant crosslinking. Conversely, cysteine bond(s) may be added to the antibody to improve its stability (particularly where the antibody is an antibody fragment such as an Fv fragment).
[00154] One type of substitutional variant involves substituting one or more hypervariable region residues of a parent antibody (e.g., a humanized or human antibody). Generally, the resulting variant(s) selected for further development will have improved biological properties relative to the parent antibody from which they are generated. A convenient way for generating such substitutional variants involves affinity maturation using phage display. Briefly, several hypervariable region sites (e.g., 6-7 sites) are mutated to generate all possible amino substitutions at each site. The antibody variants thus generated are displayed in a monovalent fashion from filamentous phage particles as fusions to the gene III product of Ml 3 packaged within each particle. The phage-displayed variants are then screened for their biological activity (e.g., binding affinity) as herein disclosed. In order to identify candidate hypervariable region sites for modification, alanine scanning mutagenesis can be performed to identify hypervariable region residues contributing significantly to antigen binding. Alternatively, or additionally, it may be beneficial to analyze a structure of the antibody conjugate complex to identify contact points between the antibody and the Z group. Such contact residues and neighboring residues are candidates for substitution according to the techniques elaborated herein. Once such variants are generated, the panel of variants is subjected to screening as described herein and antibodies with superior properties in one or more relevant assays may be selected for further development.
[00155] Another type of amino acid variant of the antibody alters the original glycosylation pattern of the antibody by deleting one or more carbohydrate moieties found in the antibody and/or adding one or more glycosylation sites that are not present in the antibody.
[00156] Glycosylation of antibodies is typically either N-linked or O-linked. N-linked refers to the attachment of the carbohydrate moiety to the side chain of an asparagine residue. The tripeptide sequences Asn-X"-Ser and Asn-X"-Thr, where X" is any amino acid except proline, are generally the recognition sequences for enzymatic attachment of the carbohydrate moiety to the asparagine side chain. Thus, the presence of either of these tripeptide sequences in a polypeptide creates a potential glycosylation site. O-linked glycosylation refers to the attachment of one of the sugars N-acetylgalactosamine, galactose, or xylose to a hydroxyamino acid, most commonly serine or threonine, although 5-hydroxyproline or 5- hydroxylysine may also be used.
[00157] Addition of glycosylation sites to the antibody is conveniently accomplished by altering the amino acid sequence such that it contains one or more of the above-described tripeptide sequences (for N-linked glycosylation sites). The alteration may also be made by the addition of or substitution by one or more serine or threonine residues to the sequence of the original antibody (for O-linked glycosylation sites).
[00158] It may be desirable to modify an antibody with respect to effector function, for example to enhance antigen-dependent cell-mediated cytotoxicity (ADCC) and/or complement dependent cytotoxicity (CDC) of the antibody. This may be achieved by introducing one or more amino acid substitutions in an Fc region of the antibody. Alternatively, an antibody can be engineered which has dual Fc regions and may thereby have enhanced complement lysis and ADCC capabilities. See G.T. Stevenson et al., Anticancer Drug Des. 3:219-230 (1989).
[00159] To increase the serum half life of an antibody, one may incorporate a salvage receptor binding epitope into the antibody (especially an antibody fragment) as described in U.S. Pat. No. 5,739,277, for example. As used herein, the term "salvage receptor binding epitope" refers to an epitope of the Fc region of an IgG molecule (e.g., IgG1, IgG2, IgG3, or IgG4) that is responsible for increasing the in vivo serum half-life of the IgG molecule.
Table 3: Amino acid substitutions
Figure imgf000055_0001
[00160] Various techniques have been developed for the production of whole antibodies and antibody fragments. Traditionally, antibody fragments were derived via proteolytic digestion of intact antibodies (see, e.g., K. Morimoto and K. Inouye, J. Biochem. Biophys. Methods 24:107-117 (1992); M. Brennan et al., Science 229:81-83 (1985)). However, these fragments can now be produced directly by recombinant host cells. Fab, Fv, VH, VL, and scFv antibody fragments can all be expressed in and secreted from E. coli as is detailed below, thus allowing the facile production of large amounts of these fragments. Antibody fragments can be isolated from the antibody phage libraries discussed above. Alternatively, Fab'-SH fragments can be directly recovered from E. coli and chemically coupled to form F(ab')2 fragments (P. Carter et al., Biotechnology 10:163-167 (1992)). According to another approach, F(ab')2 fragments can be isolated directly from recombinant host cell culture.
[00161] A variety of expression vector/host systems may be utilized to express antibodies. These systems include but are not limited to microorganisms such as bacteria transformed with recombinant bacteriophage, plasmid or cosmid DNA expression vectors; yeast transformed with yeast expression vectors; insect cell systems infected with virus expression vectors (e.g., baculovirus); plant cell systems transfected with virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with bacterial expression vectors (e.g., Ti or pBR322 plasmid); or animal cell systems.
[00162] Mammalian cells that are useful in recombinant antibody expression include but are not limited to VERO cells, HeLa cells, Chinese hamster ovary (CHO) cell lines, COS cells (such as COS-7), W138, BHK, HepG2, 3T3, RIN, MDCK, A549, PC12, K562 and 293 cells, as well as hybridoma cell lines as described herein. Mammalian cells are preferred for preparation of those antibodies that are typically glycosylated and require proper refolding for activity. Preferred mammalian cells include CHO cells, hybridoma cells, and myeloid cells.
[00163] Some exemplary protocols for the recombinant expression of antibodies are described herein below.
[00164] The term "expression vector" or "vector" refers to a plasmid, phage, virus or vector, for expressing a polypeptide from a DNA (RNA) sequence. An expression vector may comprise a transcriptional unit comprising (1) one or more regulatory sequences controlling gene expression, for example, promoters or enhancers, (2) one or more sequences that encode one or more polypeptides, and (3) appropriate transcription initiation and termination sequences. Expression vectors intended for use in yeast or eukaryotic expression systems preferably include a leader sequence enabling extracellular secretion of translated protein by a host cell. Alternatively, where an antibody polypeptide(s) is expressed without a leader or transport sequence, it may include an amino terminal methionine residue. This residue may or may not be subsequently cleaved from the expressed recombinant protein to provide a final antibody product.
[00165] Antibodies, specifically antibody fragments, may be expressed in prokaryotic systems such as E. coli. In another example, the DNA sequence encoding the specific binding agent peptide can be amplified by PCR and cloned into an appropriate vector, such as for example pGEX-3x (Pharmacia). The pGEX vector is designed to produce a fusion protein comprising glutathione-S-transferase (GST), encoded by the vector, and a peptide encoded by a DNA fragment inserted into the vector's cloning site. The primers for PCR can be generated to include for example, an appropriate cleavage site. The pGEX-3x antibody peptide construct is transformed into E. coli XL-I Blue cells (Stratagene, La Jo 11a Calif), and individual transformants are isolated and grown. The expressed peptide fusion protein may then be cleaved from the GST portion of the fusion protein.
[00166] Expression of polynucleotides encoding antibodies using the recombinant systems described above may result in production of antibodies or fragments thereof that must be "re-folded" (to properly create various disulphide bridges) in order to be biologically active.
[00167] Antibodies, specifically antibody fragments, made in bacterial cells may be produced as an insoluble inclusion body in the bacteria. Such antibodies can be purified as follows. Host cells can be sacrificed by centrifugation; washed in 0.15 M NaCl, 10 mM Tris, pH 8, 1 mM EDTA; and treated with 0.1 mg/ml lysozyme (Sigma, St. Louis, Mo.) for 15 minutes at room temperature. The lysate can be cleared by sonication, and cell debris can be pelleted by centrifugation for 10 minutes at 12,000 x g. The antibody containing pellet can be resuspended in 50 mM Tris, pH 8, and 10 mM EDTA, layered over 50% glycerol, and centrifuged for 30 min. at 6000 x g. The pellet can be resuspended in standard phosphate buffered saline solution (PBS) free of Mg and Ca ions. The antibody can be further purified by fractionating the resuspended pellet in a denaturing SDS polyacrylamide gel (Sambrook et al., supra). The gel can be soaked in 0.4 M KCl to visualize the protein, which can be excised and electroeluted in gel-running buffer lacking SDS. [00168] Mammalian host systems for the expression of antibodies are well known to those of skill in the art. Host cell strains can be chosen for a particular ability to process the expressed protein or produce certain post-translation modifications that will be useful in providing protein activity. Such modifications of the polypeptide include, but are not limited to, acetylation, carboxylation, glycosylation, phosphorylation, lipidation and acylation. Different host cells such as CHO, HeLa, MDCK, 293, Wl 38, as well as hybridoma cell lines, and the like have specific cellular machinery and characteristic mechanisms for such post- translational activities and can be chosen to ensure the correct modification and processing of the introduced, foreign protein.
[00169] A number of selection systems can be used to recover the cells that have been transformed for recombinant antibody production. Such selection systems include, but are not limited to, HSV thymidine kinase, hypoxanthine-guanme phosphoribosyltransferase and adenine phosphoribosyltransferase genes, in tk-, hgprt- or aprt-cells, respectively. Also, antimetabolite resistance can be used as the basis of selection for DHFR which confers resistance to methotrexate; gpt which confers resistance to mycophenolic acid; neo which confers resistance to the aminoglycoside G418 and confers resistance to chlorsulfuron; and hygro which that confers resistance to hygromycin. Additional selectable genes that may be useful include trpB, which allows cells to utilize indole in place of tryptophan, or hisD, which allows cells to utilize histinol in place of histidine. Markers that give a visual indication for identification of transformants include anthocyanins, beta.-glucuronidase and its substrate, GUS, and luciferase and its substrate, luciferin.
[00170] In some cases, antibodies produced using procedures described above may need to be "refolded" and oxidized into a proper tertiary structure and allowed to generate disulfide linkages in order to be biologically active. Refolding can be accomplished using a number of procedures well known in the art. Such methods include, for example, exposing the solubilized polypeptide agent to a pH usually above 7 in the presence of a chaotropic agent. The selection of chaotrope is similar to the choices used for inclusion body solubilization. However a chaotrope is typically used at a lower concentration. An exemplary chaotropic agent is guanidine. In most cases, the refolding/oxidation solution will also contain a reducing agent plus its oxidized form in a specific ratio to generate a particular redox potential which allows for disulfide shuffling to occur for the formation of cysteine bridges. Some commonly used redox couples include cysteine/cystamine, glutathione/dithiobisGSH, cupric chloride, dithiothreitol DTT/dithiane DTT, and 2-mercaptoethanol (bME)/dithio-bME. In many instances, a co-solvent may be used to increase the efficiency of the refolding. Commonly used cosolvents include glycerol, polyethylene glycol of various molecular weights, and arginine.
Linkers and Linked Compounds
[00171] An AA targeting agent may be covalently linked to a combining site in an antibody either directly or via a linker. An appropriate linker can be chosen to provide sufficient distance between the targeting agent and the antibody The general design of an embodiment of a linker for use in preparing AA targeting compounds is represented by the formula: -X-Y-Z, wherein X is a connecting chain, Y is a recognition group and Z is a reactive group. The linker may be linear or branched, and optionally includes one or more carbocyclic or heterocyclic groups. Linker length may be viewed in terms of the number of linear atoms, with cyclic moieties such as aromatic rings and the like to be counted by taking the shortest route around the ring, hi some embodiments, the linker has a linear stretch of between 5-15 atoms, in other embodiments 15-30 atoms, in still other embodiments 30-50 atoms, in still other embodiments 50-100 atoms, and in still other embodiments 100-200 atoms. Other linker considerations include the effect on physical or pharmacokinetic properties of the resulting AA targeting compound or AA targeting agent-linker, such as solubility, lipophilicity, hydrophilicity, hydrophobicity, stability (more or less stable as well as planned degradation), rigidity, flexibility, immunogenicity, modulation of antibody binding, the ability to be incorporated into a micelle or liposome, and the like.
[00172] The connecting chain X of the linker includes any atom from the group C, H, N, O, P, S, halogen (F, Cl, Br, I), or a salt thereof. X also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group. In some embodiments, X may include one or more ring structures, hi some embodiments, the linker is a repeating polymer such as polyethylene glycol comprising 2-100 units.
[00173] The recognition group Y of the linker is optional, and if present is located between the reactive group and the connecting chain. In some embodiments, Y is located from 1-20 atoms from Z. Although not wishing to be bound by any theory, it is believed that the recognition group acts to properly position the reactive group into the antibody combining site so that it may react with a reactive amino acid side chain. Exemplary recognition groups include carbocyclic and heterocyclic rings, preferably having five or six atoms. However, larger ring structures also may be used. In some embodiments, an AA targeting agent is linked directly to Y without the use of an intervening linker.
[00174] Z is capable of forming a covalent bond with a reactive side chain in an antibody combining site. In some embodiments, Z includes one or more C=O groups arranged to form a diketone, an acyl beta-lactam, an active ester, a haloketone, a cyclohexyl diketone group, an aldehyde, a maleimide, an activated alkene, an activated alkyne or, in general, a molecule comprising a leaving group susceptible to nucleophilic or electrophilic displacement. Other groups may include a lactone, an anhydride, an alpha-haloacetamide, an imine, a hydrazide, or an epoxide. Exemplary linker electrophilic reactive groups that can covalently bond to a reactive nucleophilic group (e.g., a lysine or cysteine side chain) in a combining site of antibody include acyl beta-lactam, simple diketone, succinimide active ester, maleimide, haloacetamide with linker, haloketone, cyclohexyl diketone, aldehyde, amidine, guanidine, imine, eneamine, phosphate, phosphonate, epoxide, aziridine, thioepoxide, a masked or protected diketone (a ketal for example), lactam, sulfonate, and the like, masked C=O groups such as imines, ketals, acetals, and any other known electrophilic group. In certain embodiments, the reactive group includes one or more C=O groups arranged to form an acyl beta-lactam, simple diketone, succinimide active ester, maleimide, haloacetamide with linker, haloketone, cyclohexyl diketone, or aldehyde.
[00175] The linker reactive group or similar such reactive group is chosen for use with a reactive residue in a particular combining site. For example, a chemical moiety for modification by an aldolase antibody may be a ketone, diketone, beta lactam, active ester haloketone, lactone, anhydride, maleimide, alpha-haloacetamide, cyclohexyl diketone, epoxide, aldehyde, amidine, guanidine, imine, eneamine, phosphate, phosphonate, epoxide, aziridine, thioepoxide, masked or protected diketone (ketal for example), lactam, haloketone, aldehyde, and the like.
[00176] A linker reactive group chemical moiety suitable for covalent modification by a reactive sulfhydryl group in an antibody may be a disulfide, aryl halide, maleimide, alpha- haloacetamide, isocyanate, epoxide, thioester, active ester, amidine, guanidine, imine, eneamine, phosphate, phosphonate, epoxide, aziridine, thioepoxide, masked or protected diketone (ketal for example), lactam, haloketone, aldehyde, and the like.
[00177] One of skill in the art will readily appreciate that reactive amino acid side chains in antibody combining sites may possess an electrophilic group that reacts with a nucleophilic group on an AA targeting agent or its linker, whereas in other embodiments a reactive nucleophilic group in an amino acid side chain reacts with an electrophilic group in an AA targeting agent or linker.
[00178] An AA targeting compound may be prepared by several approaches. In one approach, an AA targeting agent-linker compound is synthesized with a linker that includes one or more reactive groups designed for covalent reaction with a side chain of an amino acid in a combining site of an antibody. The targeting agent-linker compound and antibody are combined under conditions where the linker reactive group forms a covalent bond with the amino acid side chain.
[00179] In another approach, linking can be achieved by synthesizing an antibody-linker compound comprising an antibody and a linker wherein the linker includes one or more reactive groups designed for covalent reaction with an appropriate chemical moiety of an AA targeting agent. An AA targeting agent may need to be modified to provide the appropriate moiety for reaction with the linker reactive group. The antibody-linker and AA targeting agent are combined under conditions where the linker reactive group covalently links to the targeting and/or biological agent.
[00180] A further approach for forming an antibody- AA targeting compound uses a dual linker design. In certain embodiments, an AA targeting agent-linker compound is synthesized which comprises an AA targeting agent and a linker with a reactive group. An antibody-linker compound is synthesized which comprises an antibody and a linker with a chemical group susceptible to reactivity with the reactive group of the AA targeting agent- linker of the first step. These two linker containing compounds are then combined under conditions whereby the linkers covalently link, forming the antibody- AA-targeting compound.
[00181] Exemplary functional groups that can be involved in the linkage include, for example, esters, amides, ethers, phosphates, amino, keto, amidine, guanidine, imines, eneamines, phosphates, phosphonates, epoxides, aziridines, thioepoxides, masked or protected diketones (ketals for example), lactams, haloketones, aldehydes, thiocarbamate, thioamide, thioester, sulfide, disulfide, phosphoramide, sulfonamide, urea, thioruea, carbamate, carbonate, hydroxamide, and the like.
[00182] The linker includes any atom from the group C, H, N, O5 P, S, halogen (F, Cl, Br, I), or a salt thereof. The linker also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group. The linker also may include one or more ring structures. As used herein, a "ring structure" includes saturated, unsaturated, and aromatic carbocyclic rings and saturated, unsaturated, and aromatic heterocyclic rings. The ring structures may be mono-, bi-, or polycyclic, and include fused or unfused rings. Further, the ring structures are optionally substituted with functional groups well known in the art, including but not limited to halogen, oxo, -OH, -CHO, -COOH, -NO2, -CN, -NH2, -C(O)NH2, C1-6 alkyl, C2-6 alkenyl, C2-6 alkynyl, C1-6 oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, or phosphoalkynyl group. Combinations of the above groups and rings may also be present in the linkers of AA targeting compounds.
[00183] One aspect of the invention is an AA targeting agent-linker conjugate having
Formula I:
L - [AA targeting agent] (I)
wherein [AA targeting agent] is an AA targeting agent peptide.
[00184] The linker moiety L in compounds of Formula I may be attached to the amino terminus, carboxy terminus or any amino acid side chain of an AA targeting agent. In certain embodiments, L is linked to the carboxy terminus of an AA targeting agent, hi certain other embodiments, L is linked to the amino terminus of an AA targeting agent. In still other embodiments, L is linked to either a nucleophilic or electrophilic side chain. For the case of linking to an electrophilic side chain, L should possess a nucleophilic group susceptible to covalent reaction with the electrophilic side chain. Exemplary electrophilic side chains are Asp and GIu. Exemplary nucleophilic side chains are Cys, Lys, Ser, Thr, and Tyr. For the case of linking to a nucleophilic side chain, L should comprise an electrophilic group susceptible to covalent reaction with the nucleophilic side chain. In another embodiment, a nucleophilic amino acid is added to either the carboxy terminus or the amino terminus of an AA targeting agent and the linker L is covalently attached to the side chain of this additional amino acid. In certain embodiments, Lys is added to the amino terminus of an AA targeting agent. In certain other embodiments, Lys is added to the carboxy terminus of an AA targeting agent.
[00185] Thus, in those embodiments comprising R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile- Arg-Pro-R3 (SEQ ID NO:1) based AA targeting agents, exemplary compounds of Formula I formed by linking to either i) the side chains of D, E, C, K, S, T, and Y or ii) the amino or carboxy termini, include:
Sai-(L)-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3
R1-Sar-Gly-Val-(D-alloIle)-Thr(L)-Nva-Ile-Arg-Pro-R?
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro(L)
[00186] Similarly, in those embodiments comprising R1-Sar-Gly-Val-(D-alloIle)-Thr- Lys-Ile-Arg-Pro-R3 (SEQ ED NO:4) based AA targeting agents, exemplary compounds of Formula I formed by linking to either i) the side chains of D, E, C, K, S, T5 and Y or ii) the amino or carboxy termini, include:
Sar(L)-Gly-Val-(D-alloπe)-Thr-Lys-Ile-Arg-Pro-R3
Ri-Sar-Gly-Val-(D-alloIle)-Thr(L)-Lys-Ile-Arg-Pro-R3
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys(L)-Ile-Arg-Pro-R3
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro(L)
[00187] In compounds of Formula I, L is a linker moiety having the formula -X-Y-Z, wherein:
X is a biologically compatible polymer or block copolymer attached to one of the residues that comprises an AA targeting agent;
Y is an optionally present recognition group comprising at least a ring structure; and
Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody.
[00188] In some embodiments of compounds in Formula I, X is:
-R22-P- R2"- or -R22-P-R21-P'-R23- wherein:
P and P'are independently selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N- methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate), poly(N,N-diethyl aminomethacrylate), poly(ethyleneimine), polymers of quaternary amines, such as poly(N,N,N-trimethylaminoacrylate chloride), poly(methyacrylamidoρropyltrimethyl ammonium chloride), proteoglycans such as chondroitin sulfate-A (4-sulfate) chondroitin sulfate-C (6-sulfate) and chondroitin sulfate-B, polypeptides such as polyserine, polythreonine, polyglutamine, natural or synthetic polysaccharides such as chitosan, hydroxy ethyl cellulose, and lipids;
R21, R22, and R23 are each independently a covalent bond, -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-S0 alkylene, or substituted or unsubstituted straight or branched chain C 1.50 heteroalkylene;
Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl; and
R21, R22, and R23 are selected such that the backbone length of X remains about 200 atoms or less.
[00189] In some embodiments of compounds of Formula I, R22 is — (CH2)v-} -(CH2)u-C(O)-(CH2)v-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(S)-NRb-(CH2)v-, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2)U-O-(CH2)V-, -(CH2)u-S(O)0-2-(CH2)v-, -(CH2)u-S(O)0-2-NRb-(CH2)v- or -(CH2)u-P(O)(ORb)-O-(CH2)v-, wherein u and v are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20. [00190] In yet other embodiments of compounds of Formula I, R 22 is -(CH2)V-, -(CH2)u-C(O)-(CH2)v-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(O)-NRb-(CH2)v- or -(CH2)u-NRb-(CH2)v. In still other embodiments, R"2 is -(CH2)u-C(O)-NRb-(CH2)v-.
[00191] In some embodiments of compounds of Formula I, R21 and R23 are each independently -(CH2V, -(CH2)r-C(O)-(CH2)s-, -(CH2)r-C(O)-O-(CH2)v-, -(CH2)r-C(S)-NRb-(CH2)s-, -(CH2)r-C(O)-NRb-(CH2)s-, -(CH2)r-NRb-(CH2)s-, -(CH2)r-O-(CH2)s-, -(CH2VS(O)0-2-(CH2)S-, -(CH2)r-S(O)0-2-NRb-(CH2)s- or -(CH2)r-P(O)(ORb)-O-(CH2V, wherein r, s, and v are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20.
[00192] In yet other embodiments, R21 and R23 are each independently -(CH2V, -(CH2VC(O)-(CH2V, -(CH2VC(O)-O-(CH2V, -(CH2)r-C(O)-NRb-(CH2)s- or -(CH2)r-MLb-(CH2)s, and -(CH2)r-C(O)-NRb-(CH2)s-.
[00193] In still other embodiments, R21 and R23 each independently have the structure:
Figure imgf000065_0001
wherein p is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, or 45; w, r, and s are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl.
[00194] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000066_0001
wherein H1 and H1 at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and R is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl.
[00195] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000066_0002
wherein H1 and H at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl.
[00196] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000066_0003
wherein H1 and H1 at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl.
[00197] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000067_0001
wherein H1 and H1 at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl.
[00198] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000067_0002
wherein H1 and H1' at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0.6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. [00199] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000068_0001
wherein H1 and H1 at each occurrence are independently N, O, S, or CH2; r and s are each independently I5 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and t' are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl.
[00200] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000068_0002
wherein H1 and H1 at each occurrence are independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20; t and f are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl.
[00201] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000068_0003
wherein v and w are each independently 1, 2, 3, 4, or 5 and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-β alkyl. In certain of these embodiments, v is 1, 2 or 3, w is 1, 2, or 3, and Rb is hydrogen.
[00202] In certain embodiments of Formula I, L is a linker moiety having the formula -X- Y-Z, wherein:
X is attached to one of the residues that comprises an AA targeting agent, and is an optionally substituted -R22-[CH2-CH2-O]t-R23-, -R22-cycloalkyl-R23-, -R22-aryl-R23-, or -R22-heterocyclyl-R23-, wherein;
R22 and R23 are each independently a covalent bond, -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-S0 alkylene, substituted or unsubstituted straight or branched chain C1-50 heteroalkylene, substituted or unsubstituted straight or branched chain C2-50 alkenylene, or substituted or unsubstituted C2-50 heteroalkenylene;
Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl;
t is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, 45, 46, 47, 48, 49 or 50;
and the size of R22 and R23 are such that the backbone length of X remains about 200 atoms or less;
Y is an optionally present recognition group comprising at least a ring structure; and
Z is a reactive group that is capable of covalently linking to a side chain in a combining site of an antibody. In some embodiments of compounds of Formula I, if t > 1 or if-X is -R22-cycloalkyl-R23-, -R22-aryl-R23-, or -R22-heterocyclyl-R23-, Y is present.
[00203] In some embodiments of compounds of Formula I, X is:
-R22-[CH2-CH2-O]t-R23-, wherein:
R22 is -(CH2)V-, -(CH2)U-C(O)-(CH2)V-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-C(S)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2)U-O-(CH2)V-, -(CH2)u-S(0)o-2-(CH2)v-, -(CH2)u-S(O)0.2-NRb-(CH2)v- or -(CH2)u-P(O)(ORb)-O-(CH2)vS
u and v are each independently 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 and t is 0 to 50.
R23 has the structure:
Figure imgf000070_0001
wherein:
p is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,34, 35, 36, 37, 38, 39, 40, 41, 32, 43, 44, or 45;
w and r are each independently 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20;
s is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20; and
Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl;
and the values oft, u, w, p, v, r and s are such that the backbone length of X remains about 200 atoms or less.
[00204] In certain embodiments of compounds of Formula I, X has the formula:
Figure imgf000071_0001
wherein the values of v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00205] In certain embodiments of compounds of Formula I5 X has the structure:
Figure imgf000071_0002
wherein the values of v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00206] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000071_0003
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms..
[00207] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000071_0004
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00208] hi certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000072_0001
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00209] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000072_0002
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00210] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000072_0003
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms. [00211] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000073_0001
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00212] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000073_0002
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00213] hi certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000073_0003
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00214] hi certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000074_0001
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00215] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000074_0002
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 200 atoms, alternatively is less than 100 atoms, alternatively, is less than 75 atoms, alternatively is less than 50 atoms, alternatively is less than 25 atoms, or alternatively is less than 15 atoms.
[00216] In compounds having Formula I wherein L has the formula -X-Y-Z, the ring structure of Y includes saturated, unsaturated, and aromatic carbocyclic rings and saturated, unsaturated, and aromatic heterocyclic rings. The ring structure(s) may be mono-, bi-, or polycyclic, and include fused or unfused rings. Further, the ring structure(s) is optionally substituted with functional groups well known in the art including, but not limited to halogen, oxo, -OH, -CHO, -COOH, -NO2, -CN, -NH2, amidine, guanidine, hydroxylamine, -C(O)NH2, secondary and tertiary amides, sulfonamides, substituted or unsubstituted alkyl, substituted or unsubstituted alkenyl, substituted or unsubstituted alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyL sulfoalkyl, sulfoalkenyl, sulfoalkynyl, phosphoalkyl, phosphoalkenyl, and phosphoalkynyl groups.
[00217] In some embodiments of compounds having Formula I, the ring structure of Y has the optionally substituted structure:
Figure imgf000074_0003
wherein a, b, c, d, and e are each independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or f are simultaneously nitrogen.
[00218] Any open valences remaining on atoms constituting the ring structure may be filled by hydrogen or other substituents, or by the covalent attachments to X and Z. For example, if b is carbon, its valence maybe filled by hydrogen, a substituent such as halogen, a covalent attachment to X, or a covalent attachment to Z. In some embodiments, a, b, c, d, and e are each carbon, while in others, a, c, d and fare each carbon. In other embodiments, at least one of a, b, c, d, or e is nitrogen, and in still others, f is oxygen or sulfur, hi yet another embodiment, the ring structure of Y is unsubstituted. In certain embodiments, Y is phenyl.
[00219] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000075_0001
hi certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain other embodiments, v is 1, 2 or 3 and w is 1, 2, or 3. In still other embodiments, v is 1 or 2 and w is 1 or 2.
[00220] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000075_0002
wherein H1 and H1' are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; and t and t' are each independently 0, 1, 2, 3, 4, or 5. In certain of these embodiments, H1 and H1 are each independently O or CH2; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
[00221] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000076_0001
wherein H1 and H1 are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain of these embodiments, H1 and H1 are each independently O or CH2; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
[00222] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000076_0002
wherein H1 and H1' are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0.6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain of these embodiments, H1 and H1 are each independently O or CH2; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
[00223] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000076_0003
wherein H1 and H1 are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain of these embodiments, H1 and H1' are each independently O or CH2; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
[00224] In certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000077_0001
wherein H1 and H1 are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, 1, 2, 3, 4, or 5, and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain of these embodiments, H1 and H1 are each independently O or CH2; r and s are each independently 1 or 2; and t and t' are each independently 0 or 1.
[00225] hi certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000077_0002
wherein H1 and H1 are each independently N, O, S, or CH2; r and s are each independently 1, 2, 3, 4, or 5; t and t' are each independently 0, Ij 2, 3, 4, or 5, and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain of these embodiments, H1 and H1 are each independently O or CH2; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
[00226] hi certain embodiments of compounds of Formula I, X has the structure:
Figure imgf000077_0003
wherein H1 and H1' are each independently N, O, S, or CH2; r and s are each independently I5 2, 3, 4, or 5; and t and t' are each independently 0, 1, 2, 3, 4, or 5. In certain of these embodiments, H1 and H1' are each independently O or CH2; r and s are each independently 1 or 2; and t and f are each independently 0 or 1.
[00227] In certain of these embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000078_0001
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5, and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. hi some embodiments, v is 0; t is 1, 2, or 3, w is 1; and p is 1 or 2.
[00228] hi certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000078_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00229] hi certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000078_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00230] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000079_0001
hi certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3; r is 1; and s is 1 or 2.
[00231] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000079_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1 ; and p is 1 or 2.
[00232] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000080_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is I5 2, 3, 4, 5, or 6; r is I5 2, 3, 4, or 5; s is O5 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00233] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000080_0002
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is I52, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0.6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. hi some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00234] hi certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000080_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted CMO alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00235] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000081_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00236] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000081_0002
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00237] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000081_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-I0 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00238] In certain embodiments of compounds of Formula I, X-Y has the structure:
Figure imgf000082_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted Ci-io alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiment, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00239] In compounds having Formula I wherein L has the formula -X-Y-Z, the reactive group Z contains a moiety capable of forming a covalent linkage with an amino acid in a combining site of an antibody. For example, Z may be substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta- lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide. In some such embodiments, Z is substituted alkyl.
[00240] Z may be a group that forms a reversible or irreversible covalent bond. In some embodiments, reversible covalent bonds may be formed using diketone Z groups such as those shown in FIGURE 8. Thus, structures A-C may form reversible covalent bonds with reactive nucleophilic groups (e.g. lysine or cysteine side chain) in a combining site of an antibody. R'i, R'2, R'3, and R4 in structures A-C of FIGURE 8 represent substituents which can be C, H, N, O, P, S, halogen (F, Cl, Br, I) or a salt thereof. These substituents also may include a group such as an alkyl, alkenyl, alkynyl, oxoalkyl, oxoalkenyl, oxoalkynyl, aminoalkyl, aminoalkenyl, aminoalkynyl, sulfoalkyl, sulfoalkenyl, or sulfoalkynyl group, phosphoalkyl, phosphoalkenyl, phosphoalkynyl group. R'2 and R'3 also could from a ring structure as exemplified in structures B and C. X in FIGURE 8 could be a heteroatom. Other Z groups that form reversible covalent bonds include the arnidine, imine, and other reactive groups encompassed by structure G of FIGURE 8. FIGURE 9 includes the structures of other linker reactive groups that form reversible covalent bonds, e.g., structures B, G, H, and, where X is not a leaving group, E and F.
[00241] Z reactive groups that form an irreversible covalent bond with a combining site of an antibody include structures D-G in FIGURE 8 (e.g., when G is an imidate) and structures A, C and D of FIGURE 9. When X is a leaving group, structures E and F of FIGURE 9 may also form irreversible covalent bonds. Such structures are useful for irreversibly attaching a targeting agent-linker to a reactive nucleophilic group to a combining site of an antibody.
[00242] In other such embodiments, Z is a 1,3-diketone moiety. In still other such embodiments, Z is alkyl substituted by a 1,3-diketone moiety. In certain embodiments, Z has the structure:
Figure imgf000083_0001
wherein q = 0-5. In certain other embodiments, Z has the structure:
Figure imgf000083_0002
[00243] One linker for use in AA targeting compounds and for preparing AA targeting agent-linker compounds includes a 1,3-diketone reactive group as Z. In certain embodiments of Formula I, L has the structure:
Figure imgf000083_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl— C0-6 alkyl. In certain embodiments v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00244] In certain embodiments of Formula I, L has the structure:
Figure imgf000084_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 ; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 2 or 3.
[00245] In certain embodiments of Formula I, L has the structure:
Figure imgf000084_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00246] In certain embodiments of Formula I, L has the structure:
Figure imgf000085_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-Io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00247] In certain embodiments of Formula I, L has the structure:
Figure imgf000085_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-IO alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00248] In certain embodiments of Formula I, L has the structure:
Figure imgf000085_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3. [00249] In certain embodiments of Formula I, L has the structure:
Figure imgf000086_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00250] hi certain embodiments of Formula I, L has the structure:
Figure imgf000086_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5;q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00251] hi certain embodiments of Formula I, L has the structure:
Figure imgf000086_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00252] In certain embodiments of Formula I, L has the structure:
Figure imgf000087_0001
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00253] In certain embodiments of Formula I, L has the structure:
Figure imgf000087_0002
hi certain of these embodiments u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00254] hi certain embodiments of Formula I, L has the structure:
Figure imgf000087_0003
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00255] In certain embodiments of Formula I, L has the structure:
Figure imgf000088_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00256] In certain embodiments of Formula I, L has the structure:
Figure imgf000088_0002
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00257] hi certain embodiments of Formula I, L has the structure:
Figure imgf000089_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1 ; v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 2 or 3.
[00258] In certain embodiments of Formula I, L has the structure:
Figure imgf000089_0002
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00259] In certain embodiments of Formula I, L has the structure:
Figure imgf000089_0003
Li certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. Li certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. Li some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2. [00260] In certain embodiments of Formula I, L has the structure:
Figure imgf000090_0001
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00261] In certain embodiments of Formula I, L has the structure:
Figure imgf000090_0002
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-I0 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00262] In certain embodiments of Formula I, L has the structure:
Figure imgf000090_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is O; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00263] In certain embodiments of Formula I, L has the structure:
Figure imgf000091_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloatkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00264] In certain embodiments of Formula I, L has the structure:
Figure imgf000091_0002
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00265] hi certain embodiments of Formula I, L has the structure:
Figure imgf000091_0003
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00266] In certain embodiments of Formula I, L has the structure:
Figure imgf000092_0001
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-δ alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00267] hi certain embodiments of Formula I, L has the structure:
Figure imgf000092_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0.6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi still some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00268] hi certain embodiments of Formula I, L has the structure:
Figure imgf000093_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00269] In certain embodiments of Formula I, L has the structure:
Figure imgf000093_0002
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-io alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00270] hi certain embodiments of Formula I, L has the structure:
Figure imgf000093_0003
hi certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00271] In certain embodiments of Formula I, L has the structure:
Figure imgf000094_0001
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00272] hi certain embodiments of Formula I, L has the structure:
Figure imgf000094_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00273] hi certain embodiments of Formula I, L has the structure:
Figure imgf000094_0003
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In still other embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00274] In certain embodiments of Formula I, L has the structure:
Figure imgf000095_0001
In certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1 ; v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00275] hi certain embodiments of Formula I, L has the structure:
Figure imgf000095_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 4, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00276] hi certain embodiments of Formula I, L has the structure:
Figure imgf000096_0001
In certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1 ; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00277] hi certain embodiments of Formula I, L has the structure:
Figure imgf000096_0002
hi certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00278] hi certain embodiments of Formula I, L has the structure:
Figure imgf000096_0003
hi certain of these embodiments, u is 0, 1, 2, 3, 5, or 5; v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, u is 0 or 1; v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00279] As used herein, "AA1-AA2 — AAn" refers to an AA targeting agent wherein "AA1" is the first amino acid in the AA targeting agent sequence, as measured from the N- terminus, "AA2" is the second amino acid in the AA targeting agent sequence, as measured from the N-terminus, and "AAn" is the nth amino acid in the AA targeting agent sequence, as measured from the N-terminus.
[00280] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000097_0001
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3- 7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, or 3. In some embodiments, v is 1 or 2; w is 1 or 2; and q is 1 or 2.
[00281] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000097_0002
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3. In some embodiments, v is 1 or 2; w is 1 or 2; and q is 2 or 3.
[00282] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000098_0001
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3- 7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3. In some embodiments, v is 1 or 2; w is 1 or 2; and q is 2 or 3.
[00283] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000098_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00284] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000098_0003
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2. [00285] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000099_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and q is 0, 1, 2, or 3. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3, and in some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00286] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000099_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00287] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000099_0003
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or
91 unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is O; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00288] Certain embodiments in accordance with Formula I have the structrue:
Figure imgf000100_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00289] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000100_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00290] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000100_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and R at each occurrence is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsύbstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00291] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000101_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00292] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000101_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted Ci-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00293] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000101_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. Ih some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00294] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000102_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00295] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000102_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is I5 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00296] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000103_0001
In certain of these embodiments, v is O, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 ; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00297] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000103_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, I3 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00298] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000103_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00299] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000104_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0.6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00300] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000104_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00301] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000104_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. Li certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00302] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000105_0001
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00303] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000105_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-I0 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00304] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000106_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-e alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is O3 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00305] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000106_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00306] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000106_0003
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00307] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000107_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00308] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000107_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00309] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000107_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is I5 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00310] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000108_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted CI-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00311] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000108_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00312] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000108_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is O5 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- 10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
AA1-AA2-AAi5-C H- ft C-AZW-AAn
[00313] HN as used herein refers to an AA targeting agent wherein "AA1" is the first amino acid in an AA targeting agent sequence as measured from the N-terminus, "AA2" is the second amino acid in an AA targeting agent sequence as measured from the N-terminus, and "AAn" is the nth amino acid in an AA targeting agent sequence as measured from the N-terminus. The targeting agent further comprises a Lys residue at arbitrary position m+1 as measured from the N-terminus. It will be appreciated that in addition to linking to a Lys side chain in the body of an AA targeting agent, it is also possible to link to a Lys side chain on the N-terminus or C-terminus of an AA targeting agent.
[00314] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000109_0001
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00315] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000110_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00316] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000110_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00317] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000110_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00318] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000111_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1 ; s is 1 or 2; and q is 1 or 2.
[00319] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000111_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1. 10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3. [00320] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000112_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00321] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000112_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00322] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000113_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00323] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000113_0002
Figure imgf000113_0004
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00324] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000113_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00325] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000114_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00326] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000114_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2. [00327] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000115_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiment v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00328] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000115_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00329] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000116_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and R at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00330] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000116_0002
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1 ; s is 1 or 2; and q is 1 or 2.
[00331] Certain embodiments in accordance with Formula I have the structure:
Figure imgf000116_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00332] The administration of an AA targeting compound to an immunocompetent individual may result in the production of antibodies against the conjugate. Such antibodies may be directed to the variable region, including the antibody idiotype, as well as to the targeting agent or any linker used to conjugate the targeting agent to the antibody. Reducing the immunogenicity of an AA targeting compound can be accomplished by methods well known in the art, such as by attaching long chain polyethylene glycol (PEG)-based spacers and the like to the AA targeting compound. Long chain PEG and other polymers are known for their ability to mask foreign epitopes, resulting in the reduced immunogenicity of therapeutic proteins that display foreign epitopes (N.V. Katre, J. Immunol. 144:209-213 (1990); G.E. Francis et al., Int. J. Hematol. 68:1-18 (1998). Alternatively, or in addition, the individual administered the antibody- AA targeting agent conjugate may be administered an immunosuppressant such as cyclosporin A, anti-CD3 antibody, and the like.
[00333] In one embodiment, an AA targeting compound is as shown by Formula II, and includes stereoisomers, tautomers, solvates, prodrugs, and pharmaceutically acceptable salts thereof.
Antibody — L' - [AA targeting agent] (II)
[00334] In compounds of Formula II, [AA targeting agent] is defined as in Formula I. L' is a linker moiety linking an antibody to the targeting agent and having the formula -X-Y- Z'-. hi compounds of Formula II, X and Y are defined as in Formula I, and Antibody is an antibody as defined herein. FIGURES 10 and 11, respectively, illustrate the addition mechanism of a reactive, nucleophilic side chain in a combining site of an antibody to the Z moieties illustrated in FIGURES 8 and 9.
[00335] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000118_0001
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00336] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000118_0002
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00337] hi certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000118_0003
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00338] hi certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000118_0004
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group. [00339] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
.S^ .Antibody O H
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00340] hi certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
.S^ -Antibody O H
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00341] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000119_0001
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00342] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure: o o
|AN/OV Antibody 5 H H
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group. [00343] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure: oVvhkN.. Antibody
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00344] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000120_0001
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00345] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000120_0002
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00346] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000120_0003
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group. [00347] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000121_0001
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00348] hi certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000121_0002
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00349] In certain embodiments, wherein Antibody is an aldolase catalytic antibody, Z'- Antibody has the structure:
Figure imgf000121_0003
wherein HN- Antibody refers to an arbitrary side chain in the combining site of an antibody bearing an amino group.
[00350] In compounds having Formula II, Z' is an attachment moiety comprising a covalent bond and 0-20 carbon atoms to which the Antibody is attached. This is shown below for the case where the linker has a diketone moiety as the reactive group and linkage occurs with the side chain amino group of a lysine residue in the antibody combining site. The Antibody is shown schematically as bivalent with a reactive amino acid side chain for each combining site indicated.
Figure imgf000122_0001
[00351] Another embodiment shown below is for the case where the linker has a beta lactam moiety as the reactive group and linkage occurs with the side chain amino group of a lysine residue in the antibody combining site. The Antibody is shown schematically as bivalent with a reactive amino acid side chain for each combining site indicated.
H2N- Antibody -NH2
Figure imgf000122_0002
Figure imgf000122_0003
[00352] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000122_0004
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00353] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000123_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00354] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000123_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; and p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00355] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000123_0003
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3- η cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3. In some embodiments, v is 1 or 2; w is 1 or 2; and q is 1 or 2.
[00356] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000124_0001
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 1, 2, or 3; w is 1, 2, or 3; and q is 0, 1, 2, 3. some embodiments, v is 1 or 2; w is 1 or 2; and q is 2 or 3.
[00357] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000124_0002
In certain of these embodiments, v is 1, 2, 3, 4, or 5; w is 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 1, 2, or 3; and w is 1, 2, or 3. hi some embodiments, v is 1 or 2 and w is 1 or 2.
[00358] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000124_0003
Li certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1 ; s is 1 or 2; and q is 1 or 2.
[00359] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000125_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00360] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000125_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00361] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000125_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is I5 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00362] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000126_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00363] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000126_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. hi some embodiments, v is 0; t is 1 or 2; w is 1 ; and p is 1 or 2.
[00364] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000126_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00365] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000127_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- 10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00366] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000127_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0- 6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00367] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000127_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 15 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00368] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000128_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 ; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 2 or 3.
[00369] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000128_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence are independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. m certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00370] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000128_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00371] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000129_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00372] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000129_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00373] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000129_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00374] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000130_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted Ci-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 ; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 2 or 3.
[00375] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000130_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00376] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000130_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is O5 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-e alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00377] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000131_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- io alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00378] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000131_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00379] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000131_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00380] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000132_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. Li certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00381] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000132_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00382] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000133_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00383] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000133_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3 and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00384] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000133_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2. [00385] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000134_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00386] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000134_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00387] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000134_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-β alkyl, or substituted or unsubstituted aryl~Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00388] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000135_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00389] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000135_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is I, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- !o alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00390] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000136_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co- 6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00391] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000136_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1 ; p is 1 or 2; and q is 1 or 2.
[00392] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000136_0003
hi certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00393] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000137_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00394] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000137_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00395] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000138_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb is hydrogen, substituted or unsubstituted C1- 10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 2 or 3.
[00396] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000138_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb is hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co- β alkyl. hi certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. hi some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00397] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000138_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-ό alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. Ih certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 1 or 2.
[00398] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000139_0001
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; p is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1 or 2; w is 1; p is 1 or 2; and q is 2 or 3.
[00399] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000139_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; w is 1, 2, 3, 4, or 5; p is 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1; and p is 3. In some embodiments, v is 0; t is 1 or 2; w is 1; and p is 1 or 2.
[00400] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000140_0001
In certain of these embodiments, v is 0, 1, 2, 3, A, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In. some embodiments, v is 0; t is 1, 2, or 3, r is 1; s is 1 or 2; and q is 1 or 2.
[00401] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000140_0002
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; q is 0, 1, 2, or 3; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0.6 alkyl. In certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 0, 1, 2, or 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1 ; s is 1 or 2; and q is 2 or 3.
[00402] Certain embodiments in accordance with Formula II have the structure:
Figure imgf000140_0003
In certain of these embodiments, v is 0, 1, 2, 3, 4, or 5; t is 1, 2, 3, 4, 5, or 6; r is 1, 2, 3, 4, or 5; s is 0, 1, 2, 3, 4, or 5; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl. Li certain embodiments, v is 0; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; and s is 3. In some embodiments, v is 0; t is 1, 2, or 3, r is 1; and s is 1 or 2.
[00403] Alternatively, the linker may have an amine or hydrazide as the reactive group and the Antibody may be engineered to have a diketone moiety. An unnatural diketone- containing amino acid may be readily incorporated into an antibody combining site using techniques well known in the art; proteins containing unnatural amino acids have been produced in yeast and bacteria. See, e.g., J.W. Chin et al., Science 301:964-966 (2003); L. Wang et al., Science 292:498-500 (2001); J.W. Chin et al., J. Am. Chem. Soc. 124:9026-9027 (2002); L. Wang, et al., J. Am. Chem. Soc. 124:1836-1837 (2002); J.W. Chin and P.G. Schultz, Chembiochem. 3:1135-1137 (2002); J.W. Chin et al., Proc. Natl. Acad. Sci. U.S.A. 99:11020-11024 (2002); L. Wang and P.G. Schultz, Chem. Commun. (1):1-11 (2002); Z. Zhang et al., Angew. Chem. hit. Ed. Engl. 41:2840-2842 (2002); L. Wang, Proc. Natl. Acad. Sci. U.S.A. 100:56-61 (2003). Thus, for example, to insert an unnatural amino acid containing a diketone moiety into the yeast Saccharomyces cerevisiae requires the addition of new components to the protein biosynthetic machinery including a unique codon, tRNA, and aminoacyl-tRNA synthetase (aa RS). For example, the amber suppressor tyrosyl-tRNA synthetase (TyrRS)-tRNAcuA pair from E. coli may be used as reported for eukaryotes in J.W. Chin et al., Science 301:964-966 (2003). The amber codon is used to code for the unnatural amino acid of interest. Libraries of mutant TyrRS and tRNAcuA may then be produced and selected for those aaRS-tRNAcuA pairs in which the TyrRS charges the tRNAcuA with the unnatural amino acid of interest, e.g., the diketone-containing amino acid. Subsequently, antibodies incorporating the diketone-containing amino acid may be produced by cloning and expressing a gene containing the amber codon at one or more antibody combining sites.
[00404] In some embodiments of compounds of Formula II, the Antibody is a full length antibody. In other embodiments, the Antibody is Fab, Fab' F(ab')2, Fv, VH, VL, or scFv. In certain embodiments, the Antibody is a human antibody, humanized antibody or chimeric human antibody. In certain embodiments, the Antibody is a catalytic antibody. In one embodiment, the Antibody is a humanized version of a murine 38c2 comprising a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody. In another embodiment, Antibody is a chimeric antibody comprising the variable region from murine 38c2 and a constant region from a human IgG, IgA, IgM, IgD, or IgE antibody.
[00405] In some cases, two or more AA targeting agents may be linked to a single full length bivalent Antibody. This is shown below as Formula III:
Antibody[-L'-[AA targeting agent]]2 (III)
Also provided are stereoisomers, tautomers, solvates, prodrugs, and pharmaceutically acceptable salts thereof.
[00406] In compounds of Formula III, [AA targeting agent], L' and Antibody are each defined as in Formula II.
[00407] Targeting compounds such as those of Formula II may also be readily synthesized by covalently linking a targeting agent-linker compound as described herein to a combining site of a multivalent antibody. For example, an AA targeting-agent linker conjugate, where the linker includes a diketone reactive moiety, can be incubated with 0.5 equivalents of an aldolase antibody, such as h38C2 IgGl to produce an AA targeting compound. Alternatively, an AA targeting compound such as those of Formula III may be produced by covalently linking an AA targeting agent-linker compound as described herein to each combining site of a bivalent antibody.
Methods of use for AA targeting compounds
[00408] One aspect of the invention provides methods for modulating thrombospondin activity in vivo comprising administering an effective amount of an AA targeting compound as described herein to a subject. There are further provided methods for treating abnormal angiogenesis or an angiogenesis-mediated condition in a subject. Such methods include administering to the subject a therapeutically effective amount of an AA targeting compound as described herein. As used herein, an angiogenesis-mediated condition is a condition that is caused by abnormal angiogenesis activity or one in which compounds that modulate angiogenesis activity have therapeutic use. Diseases and conditions that may be treated include cancer, arthritis, psoriasis, angiogenesis of the eye associated with infection or surgical intervention, macular degeneration or diabetic retinopathy. In particular, methods of treating cancer include carcinomas of the breast, colon, rectum, lung, oropharynx, hypopharynx, esophagus, stomach, pancreas, liver, gallbladder and bile ducts, small intestine, urinary tract, female genital tract, male, genital tract, endocrine glands, and skin; hemangiomas; melanomas; sarcomas; tumors of the brain, nerves, eyes, and meninges; leukemia; or lymphoma.
Pharmaceutical Compositions and Methods of Administration
[00409] Another aspect of the invention provides pharmaceutical compositions of the AA targeting compounds. The AA targeting compounds can be mixed with pharmaceutically- acceptable carriers to form a pharmaceutical composition for administration to a cell or subject, either alone, or in combination with one or more other modalities of therapy.
[00410] A pharmaceutical composition is generally formulated to be compatible with its intended route of administration. Those skilled in the art will know that the choice of the pharmaceutical medium and the appropriate preparation of the composition will depend on the intended use and mode of administration. Examples of routes of administration include parenteral (e.g. intravenous, intramuscular, intramedullary, intradermal, subcutaneous), oral (e.g. inhalation, ingestion), intranasal, transdermal (e.g. topical), transmucosal, and rectal administration. Administration routes of AA targeting compounds may also include intrathecal, direct intraventricular and intraperitoneal delivery. The AA targeting compounds may be administered through any of the parenteral routes either by direct injection of the formulation or by infusion of a mixture of the targeting AA compound formulation with an infusion matrix such as normal saline, D5W, lactated Ringers solution or other commonly used infusion media.
[00411] The AA targeting compounds may be administered using techniques well known to those in the art. Preferably, agents are formulated and administered systemically. Techniques for formulation and administration may be found in "Remington's Pharmaceutical Sciences," 18th Ed., 1990, Mack Publishing Co., Easton, PA. For injection, AA targeting compounds may be formulated in aqueous solutions, emulsions or suspensions. AA targeting compounds are preferably formulated in aqueous solutions containing physiologically compatible buffers such as citrate, acetate, histidine or phosphate. Where necessary, such formulations may also contain various tonicity adjusting agents, solubilizing agents and/or stabilizing agents (e.g. salts such as sodium chloride or sugars such as sucrose, mannitol, and trehalose, or proteins such as albumin or amino acids such as glycine and histidine or surfactants such as polysorbates (Tweens) or cosolvents such as ethanol, polyethylene glycol and propylene glycol.
[00412] The pharmaceutical composition may contain formulation materials for modifying, maintaining or preserving, for example, the pH, osmolality, viscosity, clarity, color, isotonicity, odor, sterility, stability, rate of dissolution or release, adsorption or penetration of the composition. Suitable formulation materials include, but are not limited to, amino acids (such as glycine, glutamine, asparagine, arginine or lysine); antimicrobials; antioxidants (such as ascorbic acid, sodium sulfite or sodium hydrogen-sulfite); buffers (such as borate, bicarbonate, Tris-HCl, citrates, phosphates, other organic acids, chelating agents [such as ethylenediamine tetraacetic acid (EDTA)]; solvents (such as glycerin, propylene glycol or polyethylene glycol); sugar alcohols (such as mannitol or sorbitol); suspending agents; surfactants or wetting agents (such as pluronics, PEG, sorbitan esters, polysorbates such as polysorbate 20, polysorbate 80, triton, tromethamine, lecithin, cholesterol, tyloxapal); stability enhancing agents (sucrose or sorbitol); tonicity enhancing agents (such as alkali metal halides (preferably sodium or potassium chloride, mannitol sorbitol); delivery vehicles; diluents; excipients and/or pharmaceutical adjuvants. (Remington's Pharmaceutical Sciences, 18th Edition, A. R. Gennaro, ed., Mack Publishing Company, 1990).
[00413] When parenteral administration is contemplated, the therapeutic compositions may be in the form of a pyrogen-free, parenterally acceptable aqueous solution comprising an AA targeting compound in a pharmaceutically acceptable vehicle. One vehicle for parenteral injection is sterile distilled water in which an AA targeting compound is formulated as a sterile, isotonic solution. Yet another formulation can involve the formulation an AA targeting compound with an agent, such as injectable microspheres, bio-degradable particles, polymeric compounds (polylactic acid, polyglycolic acid), beads, or liposomes, that provides for the controlled or sustained release of the product which may then be delivered via a depot injection. Hyaluronic acid may also be used, and this may have the effect of promoting sustained duration in the circulation. Other suitable means for the introduction of the desired molecule include implantable drug delivery devices.
[00414] In another aspect, pharmaceutical formulations suitable for parenteral administration may be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks' solution, Ringer's solution, or a physiologically buffered saline. Aqueous injection suspensions may contain substances that increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Suitable lipophilic solvents or vehicles include fatty oils, such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate, triglycerides, or liposomes. Non-lipid polycationic amino polymers may also be used for delivery. Optionally, the suspension may also contain suitable stabilizers or agents to increase the solubility of the compounds and allow for the preparation of highly concentrated solutions.
[00415] The pharmaceutical composition to be used for in vivo administration typically must be sterile. This may be accomplished by filtration through sterile filtration membranes. Where the composition is lyophilized, sterilization using this method may be conducted either prior to or following lyophilization and reconstitution. The composition for parenteral administration may be stored in lyophilized form or in solution. In addition, parenteral compositions generally are placed into a container having a sterile access port, for example, an intravenous solution bag or vial having a stopper pierceable by a hypodermic injection needle.
[00416] Once the pharmaceutical composition has been formulated, it may be stored in sterile vials as a solution, suspension, gel, emulsion, solid, or a dehydrated or lyophilized powder. Such formulations may be stored either in a ready-to-use form or in a form (e.g., lyophilized) requiring reconstitution prior to administration.
[00417] One embodiment is directed to kits for producing a single-dose administration unit. The kits may each contain both a first container having an AA targeting compound and a second container having an aqueous formulation. Also included within the scope of this invention are kits containing single and multi-chambered pre-filled syringes.
[00418] In treating mammals, including humans, having a disorder with an angiogenic component to the disorder, a therapeutically effective amount of an AA targeting compound or a pharmaceutically acceptable derivative is administered. The frequency of dosing will depend upon the pharmacokinetic parameters of the AA targeting compound in the formulation used. Typically, a composition is administered until a dosage is reached that achieves the desired effect. The composition may therefore be administered as a single dose, or as multiple doses (at the same or different concentrations/dosages) over time, or as a continuous infusion. Routes and frequency of administration of a composition as well as dosage may vary from individual to individual and may be readily established using standard techniques. Further refinement of the appropriate dosage is routinely made. Appropriate dosages may be developed by one skilled in the art through the use of appropriate dose- response data.
[00419] An appropriate dosage and treatment regimen provides the active compound(s) in an amount sufficient to provide therapeutic and/or prophylactic benefit. Such a response can be monitored by establishing an improved clinical outcome (e.g. reduced number of blood vessels in a target area, decreased tumor size or volume, in treated patients as compared to non-treated patients. Typically, a suitable dose is an amount of a compound that, when administered as described herein, is capable of promoting an anti-angiogenesis response, and/or is at least 10-50% above the basal or untreated level.
[00420] In some embodiments, the most effective mode of administration and dosage regimen for the invention compositions depends upon the severity and course of the disease, the patient's health and response to treatment, and the judgment of the treating physician. Accordingly, the dosages of the invention compositions should be titrated to the individual patient. An effective dose of the compounds is in the range of from about 0.1 ug to about 40 mg per kilogram per day. An AA targeting compound may be administered as a daily intravenous infusion from about 0.1 mg/kg body weight to about 15 mg/kg body weight. Accordingly, one embodiment provides a dose of about 0.5 mg/kg body weight. Another embodiment provides a dose of about 0.75 mg/kg body weight. Another embodiment provides a dose of about 1.0 mg/kg body weight. Another embodiment provides a dose of about 2.5 mg/kg body weight. Another embodiment provides a dose of about 5 mg/kg body weight. Another embodiment provides a dose of about 10.0 mg/kg body weight. Another embodiment provides a dose of about 15.0 mg/kg body weight. Doses of an AA targeting compound or a pharmaceutically acceptable derivative should be administered in intervals of from about once per day to 2 times per week, or alternatively, from about once every week to once per month. In one embodiment, a dose is administered to achieve peak plasma concentrations of an AA targeting compound or a pharmaceutically acceptable derivative thereof from about .002 mg/ml to 30 mg/ml. This rriay be achieved by the sterile injection of a solution of the administered ingredients in an appropriate formulation (any suitable formulation solutions known to those skilled in the art of chemistry may be used). Desirable blood levels may be maintained by a continuous infusion of an AA targeting compound as ascertained by plasma levels measured by a validated analytical methodology.
[00421] One method for administering an AA targeting compound to an individual comprises administering an AA targeting agent - linker conjugate to the individual and allowing it to form a covalent compound with a combining site of an appropriate antibody in vivo. The antibody portion of an AA targeting compound that forms in vivo may be administered to the individual before, at the same time, or after administration of the targeting agent - linker conjugate. As already discussed, an AA targeting agent may include a linker/reactive moiety, or the antibody combining site may be suitably modified to covalently link to the targeting agent. Alternatively, or in addition, an antibody may be present in the circulation of the individual following immunization with an appropriate immunogen. For example, catalytic antibodies may be generated by immunizing with a reactive intermediate of the substrate conjugated to a carrier protein. See R. A. Lerner and CF. Barbas 3rd, Acta Chem. Scand. 50:672-678 (1996). In particular, aldolase catalytic antibodies maybe generated by administering with keyhole limpet hemocyanin linked to a diketone moiety as described by P. Wirsching et al., Science 270:1775-1782 (1995) (commenting on J. Wagner et al., Science 270:1797-1800 (1995)).
[00422] The invention also provides a method of visualizing or localizing a thrombospondin receptor or anti-angiogenesis target (i.e. AA-targeting agent receptor) in tissues and cells. In one embodiment, biopsied tissues may be examined for presence of AA- targeting agent receptor, hi another embodiment, neovascularization in a subject may be imaged by administering to the subject an AA targeting agent or compound including a detectable label. As used herein, the term "detectable label" refers to any molecule which can be administered in vivo and subsequently detected. Exemplary detectable labels include radiolabels and fluorescent molecules. Exemplary radionuclides include indium- 111, technetium-99, carbon-11, and carbon-13. Fluorescent molecules include, without limitation, fluorescein, allophycocyanin, phycoerythrin, rhodamine, and Texas red.
Combination Therapies
[00423] The vasculature within a tumor generally undergoes active angiogenesis, resulting in the continual formation of new blood vessels to support the growing tumor. Such angiogenic blood vessels are distinguishable from mature vasculature in that angiogenic vasculature expresses unique endothelial cell surface markers, including the .alpha..sub.v.beta..sub.3 integrin. (Brooks, Cell 79:1157-1164 (1994); WO 95/14714, Int. Filing Date Nov. 22, 1994) and receptors for angiogenic growth factors (Mustonen and Alitalo, J. Cell Biol. 129:895-898 (1995); Lappi, Semin. Cancer Biol. 6:279-288 (1995)).
[00424] The invention also includes administration of one or more AA targeting agents in combination with one or more oncology therapeutics, each being administered according to a regimen suitable for that therapeutic. The components of the combination therapy may be administered concurrently or non-concurrently. As used herein, the terms "concurrently administered" and "concurrent administration" encompass substantially simultaneous administration of one or more AA targeting compounds and one other oncology therapeutic.
[00425] As used herein, the term, "non-concurrent" administration encompasses administering one or more AA targeting compounds at different times, in any order, whether overlapping or not. This includes, but is not limited to, sequential treatment (such as pretreatment, post-treatment, or overlapping treatment) with the components of the combination, as well as regimens in which the drugs are alternated, or wherein one component is administered long-term and the other(s) are administered intermittently. Components may be administered in the same or in separate compositions, and by the same or different routes of administration.
[00426] Suitable oncology therapeutics and combinations that may be used in combination with an AA targeting compounds are listed in Tables 4-6.
Table 4: Approved oncology drugs and indications
Figure imgf000148_0001
Figure imgf000149_0001
Figure imgf000150_0001
Figure imgf000151_0001
Figure imgf000152_0001
Figure imgf000153_0001
Figure imgf000154_0001
Figure imgf000155_0001
Figure imgf000156_0001
Figure imgf000157_0001
Figure imgf000158_0001
Figure imgf000159_0001
Figure imgf000160_0001
Table 5: Advanced aiitiangiogenic compounds in the clinic
Figure imgf000160_0002
Figure imgf000161_0001
Figure imgf000162_0001
Table 6: Combination therapies for use in oncology
Figure imgf000162_0002
[00427] BAMVEC Migration Assay [00428] Endothelial cell migration is performed as described in PJ. Polverini et al., Methods Enzymol. 198:440-450 (1991). The BAMVECs (bovine adrenal microvascular endothelial cells, VEC Technologies, Rensselaer, NY) are starved overnight in EBM (endothelial basal medium) containing 0.1% BSA. Cell are washed with HBSS and treated with Cellstripper™ (Mediatech, Herndon, VA) for 10 minutes, then harvested with trypsin and resuspended in EBM with 0.1% BSA at a concentration of 1.5 X 106 cells per mL. Next, cells are added to the bottom of a modified Boyden chamber (Nucleopore Corp). The chamber is assembled, inverted, and the cells are allowed to adhere for 90 minutes. The test compounds are added to the top part of the wells and incubated 3-4 hours. Membranes are recovered, fixed, stained, and the cells migrated through the filter. The cells are counted at (10Ox) using 10 fields. 0.25% FBS (fetal bovine serum) (Tissue Culture Biologicals, Tulare, CA) is used for a positive control, and 0.1% BSA is used for a negative control. Background migration is subtracted and the data presented is a percentage of FBS-induced migration (% maximal migration).
[00429] Matrigel Plug Assay
[00430] 500 μl of growth factor reduced Matrigel (BD Bioscience), containing 100 ng/ml bFGF (R&D systems), is prepared on ice and injected in the left chest area of nude mouse anesthetized with isofluorane (5 mice per group). The test compounds are dosed i.v., at 30 mg/kg twice a week. After one week, the plugs are extracted and photographed. Five plugs of the same group are aligned together and snap-frozen in one OTC compound block. Five 5 μm sections in different depths are obtained from each block using a Leica CMl 850 Cryostat. The slides are immediately fixed in cold acetone for 2 minutes and air dried. CD31 immunohistochemical staining of blood vessels is carried out by using an Anti-Rat IG HRP detection kit (BD Pharmingen) and using the methods provided in the manufacturer's instruction manual. The primary CD31 antibody used is Rat IgG2a, Clone MEC 13.3 (BD Pharmingen, cat# 550274,). The CD31 antibody is diluted 1: 30 -50. The CD31 positive area of every plug is photographed using a Qimaging Micropublisher 5.0 RTV camera coupled with a Nikon Eclipse 80i microscope (20X). ImagePro 5.1 software is used to quantify the CD31 positive area using a common macro throughout the experiment. The total CD31 positive area of five sections of each plug is calculated. [00431] The versatility of the invention is illustrated by the following Examples, which illustrate typical embodiments of the invention and are not limiting of the claims or specification in any way.
EXAMPLES
[00432] EXAMPLE 1 : . Synthesis of:
Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO:1)
[00433] Solid phase peptide synthesis of the modified peptide on a 100 μ mole scale is performed using manual solid-phase synthesis, a Symphony Peptide Synthesizer and Fmoc protected Rink Amide MBHA. The following protected amino acids are sequentially added to resin: Fmoc-Pro-OH, Fmoc-Arg(Pbf)-OH, Fmoc-Ile-OH, Fmoc-Nva-OH, Fmoc-Thr(tBu)- OH, Fmoc-(D-alloIle)-OH, Fmoc- VaI-OH, Fmoc-Gly-OH, and Fmoc-Sar-OH. They are dissolved in Λζ N-dimethylformamide (DMF) and, according to the sequence, activated using O-benzotriazol-l-yl-7V, N, N1, iV'-tetramethyl-uronium hexafluorophosphate (HBTU) and Diisopropylethylamine (DIEA). Removal of the Fmoc protecting group is achieved using a solution of 20% (WV) piperidine in N,N-dimethylformamide (DMF) for 20 minutes. Between every coupling, the resin is washed 3 times with Λ^N-dimethylformamide (DMF) and 3 times with isopropanol. The peptide is cleaved from the resin using 85% TF A/5% TIS/5% thioanisole and 5% phenol, followed by precipitation by dry-ice cold Et2O. The product is purified by a reverse phase HPLC using a C18 column.
[00434] EXAMPLE 2: Synthesis of:
Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro (SEQ ID NO:3)
[00435] Solid phase peptide synthesis of the modified peptide on a 100 μ mole scale is performed using manual solid-phase synthesis, a Symphony Peptide Synthesizer and Fmoc protected Rink Amide MBHA. The following protected amino acids are sequentially added to resin: Fmoc-Pro-OH, Fmoc-Arg(Pbf)-OH, Fmoc-Lys(Boc)-OH, Fmoc-Nva-OH, Fmoc- Thr(tBu)-OH, Fmoc-(D-allo-Ile)-OH, Fmoc-Val-OH, Fmoc-Gly-OH, and Fmoc-Sar-OH. They are dissolved in iV,N-dimethylformamide (DMF) and, according to the sequence, activated using O-benzotriazol-1-yl-iV, N, N1, N7-tetramethyl-uronium hexafluorophosphate (HBTU) and Diisopropylethylamine (DIEA). Removal of the Fmoc protecting group is achieved using a solution of 20% (V /V) piperidine in N,N-dimethylformamide (DMF) for 20 minutes. Between every coupling, the resin is washed 3 times with ΛζN-dimethylformamide (DMF) and 3 times with isopropanol. The peptide is cleaved from the resin using 85% TF A/5% TIS/5% thioanisole and 5% phenol, followed by precipitation by dry-ice cold Et2O. The product is purified by a reverse phase HPLC using a C18 column.
[00436] EXAMPLE 3: Synthesis of:
Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro (SEQ ID NO: 10)
[00437] Solid phase peptide synthesis of the modified peptide on a 100 μ mole scale is performed using manual solid-phase synthesis, a Symphony Peptide Synthesizer and Fmoc protected Rink Amide MBHA. The following protected amino acids are sequentially added to resin: Fmoc-Pro-OH, Fmoc-Arg(Pbf)-OH, Fmoc-Ile-OH, Fmoc-Nva-OH, Fmoc-Thr(tBu)- OH, Fmoc-(D-allo-Ile)-OH, Fmoc- VaI-OH, Fmoc-Gly-OH, and Fmoc-Pro-OH. They are dissolved in iV,7V-dimethylformamide (DMF) and, according to the sequence, activated using O-benzotriazol-l-yl-N, N, N1, N^-tetramemyl-uronium hexafluorophosphate (HBTU) and Diisopropylethylamine (DIEA). Removal of the Fmoc protecting group is achieved using a solution of 20% (WV) piperidine in ΛζiV-dimethylformamide (DMF) for 20 minutes. Between every coupling, the resin is washed 3 times with iVjN-dimethylformamide (DMF) and 3 times with isopropanol. The peptide is cleaved from the resin using 85% TF A/5% TIS/5% thioanisole and 5% phenol, followed by precipitation by dry-ice cold Et2O. The product is purified by a reverse phase HPLC using a C18 column.
[00438] EXAMPLE 4: Synthesis of:
Figure imgf000165_0001
is provided in FIGURE 12.
[00439] EXAMPLE 5: Synthesis of:
Figure imgf000165_0002
is provided in FIGURE 13.
[00440] EXAMPLE 6: Synthesis of:
Figure imgf000166_0001
is provided in FIGURE 14.
[00441] EXAMPLE 7: Synthesis of
Figure imgf000166_0002
is provided in FIGURE 15.
[00442] EXAMPLE 8: Synthesis of:
Figure imgf000166_0003
is provided in FIGURE 16.
[00443] EXAMPLE 9: Synthesis of:
Figure imgf000166_0004
is provided in FIGURE 17.
[00444] EXAMPLE lO: Synthesis of:
Figure imgf000166_0005
is provided in FIGURE 18. [00445] EXAMPLE Il: Synthesis of:
Figure imgf000167_0001
is provided in FIGURE 19.
[00446] EXAMPLE 12: Synthesis of:
Figure imgf000167_0002
is provided in FIGURE 20.
[00447] EXAMPLE 13: Synthesis of:
Figure imgf000167_0003
is provided in FIGURE 21.
[00448] EXAMPLE 14: Synthesis of:
Figure imgf000167_0004
is provided in FIGURE 22.
[00449] EXAMPLE 15: Synthesis of:
Figure imgf000167_0005
is provided in FIGURE 23.
[00450] EXAMPLE 16: Synthesis of:
Figure imgf000168_0001
is provided in FIGURE 24.
[00451] EXAMPLE 17: Synthesis of:
Figure imgf000168_0002
is provided in FIGURE 25. While this EXAMPLE uses the compound of EXAMPLE 12, it could also sufficiently employ the compounds of EXAMPLE 13. Further, while this EXAMPLE shows linking to the N-terminus, the free acid on the left side of the compounds of EXAMPLES 12 and 13 may also be linked to any nucleophilic side chain on a peptide, such as the C, K5 S, T or Y side chains. As is also shown in this EXAMPLE, the Fmoc protected amino group on the right side of the compounds of EXAMPLES 12 and 13 is used to link to the recognition group, Y, via an amide bond.
[00452] EXAMPLE 18: Synthesis of:
Figure imgf000168_0003
is provided in FIGURE 26. While this EXAMPLE uses the compound of EXAMPLE 15, it could also sufficiently employ the compounds of EXAMPLES 14 and 16. Further, while this EXAMPLE shows linking to the N-terminus, the free acid on the left side of the compounds of EXAMPLES 14-16 may also be linked to any nucleophilic side chain on a peptide, such as the C, K, S, T or Y side chains. As is also shown in this EXAMPLE, the free acid on the right side of the compounds of EXAMPLES 14-16 is used to link to the antibody recognition group, Y, via an amide bond. [004S3] EXAMPLE 19: Synthesis of:
3-{2-[2-(2-{2-[2-(2-tert-Butoxycarbonyl-ethoxy)-ethoxy]-ethoxy}-ethoxy)- ethoxy]ethoxy}-propionic acid tert-butyl ester
Figure imgf000169_0001
[00454] The title compound was prepared using a reported method (O. Seitz and H. Kunz, J. Org. Chem. 62:813-826 (1997)). A small piece of sodium metal was added to a solution of tetra(ethylene glycol) (47.5 g, 244 mmol) in THF (200 ml) and stirred until the sodium was dissolved completely. ^Butyl acrylate (94 g, 730mmol) was then added and stirring continued for 2 days at RT. Another batch of 'Butyl acrylate (94 g, 730mmol) was added and stirring continued for another 2 days. The reaction mixture was neutralized with a few drops of IN HCl and concentrated under reduced pressure. The residue was suspended in water and extracted with ethyl acetate (3 X 150 ml). Combined organic layers were washed with brine and dried over sodium sulfate. Evaporation of volatiles over reduced pressure provided the crude product as colorless liquid which was purified using a silica gel column (42 g, 51%).
[00455] EXAMPLE 20: Synthesis of:
3-{2-[2-(2-{2-[2-(2-Carboxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-propionic acid
Figure imgf000169_0002
[00456] A solution of 3- {2-[2-(2- {2-[2-(2-tert-Butoxycarbonyl-ethoxy)-ethoxy]-ethoxy} - ethoxy)-ethoxy]-ethoxy} -propionic acid tert-butyl ester (6 g, 18.6mmol) in anisole (20 ml) was cooled in an ice bath and trifluroacetic acid (65 g) was added. After 3 hrs at RT volatiles were removed under reduced pressure and the residue was partitioned between ethyl acetate (50 ml) and 5% sodium bicarbonate solution. The aqueous layer was acidified with 1 N HCl, saturated with NaCl and then extracted with ethyl acetate (3 X 50 ml). Combined organic layers were washed with brine and dried over sodium sulfate. Removal of volatiles under the reduced pressure provided the product as colorless liquid which solidified upon refrigeration (3.8 g, 82%).
[00457] EXAMPLE 21: Synthesis of: 3-(2-{2-[2-(2-{2-[2-(4-{2-[2-(2-Methyl-[l,3]dioxoIan-2-ylmethyl)-[l,3]dioxolan-2-yl]- ethyl}-phenylcarbamoyl)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethoxy)-propionic acid
Figure imgf000170_0001
[00458] Compound from EXAMPLE 20 (0.6 g, 1.8 mmol) was dissolved in dichloromethane (10 ml) and 4-{2-[2-(2-Methyl-[l93]dioxolan-2-ylmethyl)-[l,3]dioxolan-2- yl]-ethyl}-phenylamine (0.3 g, 1.4 mmol) followed by EDCI (0.28 g, 1.8 mmol) was added at RT. After 1 hr at RT the RM was washed with water and dried over sodium sulfate. Evaporation of volatiles and purification over silica gel column with 1 to 15% methanol in dichloromethane provided title compound as gum (0.47 g, 32%).
[00459] EXAMPLE 22: Synthesis of: 4-{2-[2-(2-Methyl-[l,3]dioxolan-2-ylmethyl)-[l,3]dioxolan-2-yl]-ethyl}-phenylamine
Figure imgf000170_0002
2. H2 Pd/C
[00460] A clean oven dried flask was charged with the 6-(4-nitro-phenyl)-hexane-2,4- dione (3.7g, 15.72 mmol), dry CH2Cl2 (20 ml) followed by bisTMS ethylene glycol (38.5 ml, 157.3 ml) were added to the flask and the resulting solution was cooled to -50C with stirring under argon. TMSOTf (30OjLiI) was added to the reaction mixture and the solution was stirred at -50C for 6h. Reaction was quenched with pyridine (10 ml) and poured into sat. NaHCO3. The mixture was extracted with EtOAc and the organic layer was washed with water, brine, dried (Na2SO4) and concentrated to give a yellow solid. The solid was triturated with hexanes to give a free flowing pale yellow solid (3.5g, 72%) which was dissolved in EtOAc (50 ml) and hydrogenated on a Parr shaker starting with 50 psi of hydrogen pressure. After two hours the reaction was filtered through a pad of celite, the celite was washed thoroughly with CH2Cl2/Me0H and combined organics were concentrated to give title compound (1.46 g, 100%) as an oil that solidifies upon standing.
[00461] EXAMPLE 23: Synthesis of: Synthesis of 4- [4-(3,5-Dioxo-hexyl)-phenylcarbamoyl] -butyric acid 2,5-dioxo pyrrolidin- 1-yl ester (10)
Figure imgf000171_0001
[00462] Step l: 6-(4-Nitro-phenyl)-hexane-2,4-dione (11)
[00463] To a reaction vessel (heat and vacuum dried and equipped with a magnetic spin bar) was added tetrahydrofuran and lithium diisopropylamide (2M heptane / ethylbenzene / tetraliydrofuran; 69.4 mL, 138.9 mmol). The solution cooled to -780C. Pentane-2,4-dione (7.13 mL, 69.4 mmol) was added dropwise and the solution stirred 30 minutes at -780C. 4- nitrobenzyl bromide (15.0 g, 69.4 mmol) was added in one portion. The solution was removed from the dry-ice/acetone bath, allowed to warm to room temperature and stirred 16 hours. The solution was cooled to approximately O0C and the reaction quenched with IM HCl. Tetrahydrofuran was removed under reduced pressure. The crude material was taken up into dichloromethane and washed with IM HCl and brine. The aqueous layers were again washed with dichloromethane. The combined dichloromethane layers were dried (Na2SO4) and removed under reduced pressure. Gradient flash column chromatography (FCC) was performed using 5% to 15% ethyl acetate/hexanes to afford title compound (8.5 g, 52%; yellow solid). 1H NMR (CDCl3): δ 8.14 (d, J = 9.0 Hz, 2 H)5 δ 7.43 (d, J = 8.4 Hz, 2 H), δ 5.45 (s, 1 H), δ 3.06 (t, J = 7.5 Hz, 2 H), δ 2.64 (t, J = 7.8 Hz, 2 H), δ 2.04 (s, 3 H).
[00464] Step 2: 4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyric acid (12)
[00465] 200 mL tetrahydrofuran, 6-(4-nitro-phenyl)-hexane-2,4-dione (8.0 g, 34.0 mmol) and dihydro-pyran-2,6-dione (3.88 g, 34.0 mmol) were added to a reaction vessel. The reaction vessel was purged three times with argon. Approximately 200 mg palladium (10 wt % on activated carbon) was added. The reaction vessel was purged again with argon and excess hydrogen introduced via a balloon. Solution stirred 16 hours at room temperature. Hydrogen removed under reduced pressure and catalyst removed by filtration through celite. Tetrahydrofuran removed under reduced pressure to afford title compound (10.5 g, 97%, yellow solid). [00466] Step 3: 4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyric acid 2,5-dioxo pyrrolidin-1-yl ester (10)
[00467] To a reaction vessel (heat and vacuum dried and equipped with a magnetic spin bar) was added 4-[4-(3,5-dioxo-hexyl)-phenylcarbamoyl]-butyric acid (10.53 g, 33.0 mmol), N-hydroxysuccinimide (3.8 g, 33.0 mmol) and l-[3-(dimethylamino) propyl]-3- ethylcarbodiimide hydrochloride (6.3 g, 33.0 mmol) and dichloromethane (250 mL). The solution was stirred under nitrogen at room temperature for 16 hours then washed with 10% citric acid, brine and dried (Na2SO4). Dichloromethane was removed under reduced pressure. FCC with 70% ethyl acetate / hexanes gave title compound (7.4 g, yellow solid, 54%). 1H NMR (CDCl3): δ 7.87 (s, 1 H), δ 7.43 (d, J = 8.4 Hz, 2 H)5 δ 7.12 (d, J = 8.4 Hz, 2 H), δ 5.46 (s, 1 H)5 δ 2.89 (t (& m), J = 8.1 Hz (for the t), 7 H), δ 2.73 (t, J = 6.0 Hz, 2 H), δ 2.56 (t, J = 7.2 Hz, 2 H)5 δ 2.47 (t, J = 6.9 Hz5 2 H), δ 2.21 (p, J = 6.6 Hz5 2 H), δ 2.04 (s, 3 H).
[00468] EXAMPLE 24: Synthesis of:
Synthesis of 3-{2-[2-(2-{4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyrylamino}- ethoxy)-ethoxy]-ethoxy}-propionic acid 2,5-dioxo-pyrrolidm~l-yl ester, (20)
Figure imgf000172_0001
[00469] Step 1: 3-{2-[2-(2-Hydroxy-ethoxy)-ethoxy]-ethoxy}-propionic acid tert- butyl ester
[00470] Na metal (catalytic) was added to a stirring solution of acrylic acid tert-butyl ester (6.7 mL, 46 mmol), and 2-[2-(2-hydroxy-ethoxy)-ethoxy]-ethanol (20.7 g, 138 mmol) in THF (100 mL) at 0 0C and the mixture was stirred overnight. Solvent was removed and the remaining oil dissolved in EtOAc (100 mL). The organic layer was washed with water (3 x 50 mL), and dried over Na2SO4 and the solvent removed in vacuo to give an oil which corresponds to the title compound that would be used as is for the next step. (M + 1) = 279.
[00471] Step 2: 3-{2-[2-(2-Tosylsulfonyloxy-ethoxy)-ethoxy]-ethoxy}-propionic acid tert-butyl ester [00472] Tosyl chloride (22.3 g, 117 mmol) was added in portions to a stirring solution of 3- {2-[2-(2-hydroxy-ethoxy)-ethoxy]-ethoxy} -propionic acid tert-butyl ester (16.3 g, 58.6 mmol) and pyridine 60 niL in (240 mL) and the mixture was stirred overnight. The reaction was quenched with water (300 mL) and the organic layer was separated. The aqueous layer was extracted with CH2Cl2 (2 x 100 mL). The combined organic layer was washed with HCl (IN, 100 mL), water (100 mL), and dried over Na2SO4 and the solvent was removed in vacuo to give an oil which corresponds to the title compound that would be used as is for the next step. (M + 1) = 433.
[00473] Step 3: 3-{2-[2-(2-Amino-ethoxy)-ethoxy]-ethoxy}-propionic acid tert-butyl ester
[00474] NaN3 (35g, 538 mmol) was added to a stirring solution of 3-{2-[2-(2- tosylsulfonyloxy-ethoxy)-ethoxy]-ethoxy} -propionic acid tert-butyl ester (2Og5 46 mmol) in DMF (150 mL) and the reaction was stirred overnight. Reaction was diluted with water (200 mL) and extracted with EtOAc (4 x 100 mL). The organic layer was washed with water (100 mL) and brine (100 mL) and dried over Na2SO4. The solvent was removed in vacuo to give an oil. Column chromatography EtO Ac/Hex (1 :4) gave an oil which corresponds to the 3-{2- [2-(2-azido-ethoxy)-ethoxy]-ethoxy} -propionic acid tert-butyl ester, (M + 1) = 304. This oil was hydrogenated using Pd (5% on carbon) in EtOAc under hydrogen (1 atm.) over 3 days. The catalyst was removed by filtration and solvent removed in vacuo to give an oil corresponding to the title compound, (M + 1) = 278.
[00475] Step 4: 3~{2-[2-(2-{4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyrylamino}- ethoxy)-ethoxy]-ethoxy}-propionic acid tert-butyl ester
[00476] A solution of 4-[4-(3,5-dioxo-hexyl)-phenylcarbamoyl]-butyric acid 2,5-dioxo- pyrrolidin-1-yl ester (1.5 g, 3.6 mmol), 3 -{2-[2-(2-amino-ethoxy)-ethoxy]-ethoxy} -propionic acid tert-butyl ester (1.0 g, 3.6 mmol) and DIEA (1.3 μL, 7.2 mmol) in CH2Cl2 (10 mL) was stirred at rt overnight. The solvent was removed in vacuo and the residual oil purified using column chromatography EtOAc/MeOH (95:5) to give the title compound as a transparent oil, (M + 1) = 579.
[00477] Step 5: 3-{2-[2-(2-{4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyrylamino}- ethoxy)-ethoxy]-ethoxy}-propionic acid 2,5-dioxo-pyrroIidin-l-yI ester [00478] 3- {2-[2-(2- {4-[4-(3,5-Dioxo-hexyl)-phenylcarbamoyl]-butyrylamino} -ethoxy)- ethoxy]-ethoxy} -propionic acid tert-butyl ester (400 mg, 0.692 mmol) was dissolved in TFA/CH2C12 (1:1, 3 mL) and the mixture stirred overnight. The solvent was removed to give an oil as the acid intermediate. This oil was dissolved in CH2Cl2 (4 mL) containing DIEA (569 μL, 3.09 mmol), N-hydroxysuccinirnide (119 mg, 1.03 mmol) and EDC (197 mg, 1.0 mmol) and the mixture stirred over the night. The solvent was removed and the residual oil was purified using column chromatography EtOAc/MeOH (95:5) to give an oil as the title compound, (M + 1) = 620.
[00479] EXAMPLE 25 : Synthesis of AA targeting compound
[00480] Compound of EXAMPLES 17 or 18 can be linked to antibody 38C2 by the following procedure: One mL antibody 38C2 in phosphate buffered saline (10 mg/mL) is added to 12 μL of a 10 mg/mL stock solution of AA targeting agent and the resulting mixture maintained at room temperature for 2 hours prior to use.
[00481] EXAMPLE 26: Synthesis of:
NHAc
Figure imgf000174_0001
is provided in FIGURE 27. While this EXAMPLE uses the compound of EXAMPLE 12, it could also sufficiently employ the compounds of EXAMPLE 13.
[00482] EXAMPLE 27:
[00483] C. Rader, et al., J. MoI. Biol. 332:889-899 (2003) details one method of making h38c2. The following details the results, materials and methods in this reference.
[00484] Humanization Human Vκ gene DPK-9 and human lκ gene JK4 were used as frameworks for the humanization of the, kappa light chain variable domain, and human VH gene DP-47 and human JH gene JH4 are used as frameworks for the humanization of the heavy chain variable domain of m38C2. All complementarity determining region (CDR) residues as defined by Kabat et al., as well as defined framework residues in both light chain and heavy chain variable domain, were grafted from m38C2 onto the human framework. The selection of grafted framework residues maybe based on the crystal structure of mouse mAb 33F12 Fab (PDB IAXT). mAb 33F12 Fab shares a 92% sequence homology with m38c2 in the variable domains and identical CDR lengths. Furthermore, both 33F12 and m38C2 have similar catalytic activity. Framework residues consisted of five residues in the light chain and seven residues in the heavy chain (Figure 7A) and encompassed the residues that are likely to participate directly or indirectly in the catalytic activity of m38C2. These include the reactive lysine of m38C2, LysH93, which is positioned in framework region 3 (FR3) of the heavy chain. Six residues, SerH35, ValH37, TrpH47, TrpH103, and PheL98, which are conserved between mouse mAbs 33F12 and 38C2, are within a 5-A radius of the e amino group of LysH93. These residues were also conserved in the humanization. LysH93 lies at the bottom of a highly hydrophobic substrate binding sites of mouse mAbs 33F12 and 38C2. hi addition to CDR residues, a number of framework residues line this pocket. Among these, LeuL37, GIn142, SerM3, Vaf85, PheL87, ValH5, SerH40, GluH42, Gl/88, He1189, and ThrH94 were grafted onto the human framework.
[00485] Expression By fusing the humanized variable domains to human constant domains Cκ and C711, h38C2 was initially generated as Fab expressed in E. coli. Next, h38c2 IgG was formed from h38c2 Fab using the PIGG vector engineered for human IgGl expression in mammalian cells. Supernatants from transiently transfected human 293T cells were subjected to affinity chromatography on recombinant protein A, yielding approximately 1 mg/L h38C2 IgGl . Purity was established by SDS-PAGE followed by Coomassie blue staining.
[00486] β-Diketone Compounds -
Figure imgf000175_0001
Figure imgf000175_0002
Figure imgf000176_0001
3
The enaminone formed by the covalent addition of a β-diketone with m38c2 has a characteristic UV absorbance at \nax = 318 nm. Like m38C2 IgG, h38C2 IgG showed the characteristic enaminone absorbance after incubation with /3-diketone. As a negative control, recombinant human anti-HIV-1 gpl20 mAb bl2 with the same IgGl isotype as h38C2 but without reactive lysine, did not reveal enaminone absorbance after incubation with /3-diketone 2. For a quantitative comparison of the binding of /3-diketones to m38C2 and h38C2, the authors used a competition ELISA. The antibodies were incubated with increasing concentrations of /3-diketones 2 and 3 and assayed against immobilized BSA-conjugated β- diketone 1. The apparent equilibrium dissociation constants were 38 μM (m38C2) and 7.6 μM (h38C2) for /3-diketone 2 and 0.43 μM (m38C2) and 1.0 μM (h38C2) for /3-diketone 3, revealing similar /3-diketone binding properties for mouse and humanized antibody (Fig. 6).
[00487] Molecular modeling — A molecular model of h38C2 Fab was constructed by homology modeling using the crystal structure of a related aldolase antibody, mouse 33Fl 2 Fab (Protein Data Bank ID: IAXT), as a template. The crystal structure of mouse 33F12 Fab was previously determined at a resolution of 2.15 A.4 Alignment of mouse 33F12 and 38C2 amino acid sequences using the HOMOLOGY module within INSIGHT II software (Accelrys) confirmed that both sequences are highly homologous. They differ from each other by 19 out of 226 amino acids in the two variable domains, and their CDRs share the same lengths. In addition to the high sequence homology, both structures exhibit considerable structural similarity, as observed by a low-resolution crystal structure of 38C2. Residues in the model were mutated to conform to the h38C2 amino acid sequence and sidechains were placed based on standard rotamers. This model was then minimized with the DISCOVER module in INSIGHT II using 100 steps each of steepest descent minimization followed by conjugate gradient minimization.
[00488] Construction ofh38C2 Fab - The sequences of the variable light and heavy chain domains of m38C2 (SEQ ID NOs:32 and 33, respectively) as well as the sequences of human germline sequences DPK-9 (SEQ ID NO:36), JK4 (SEQ ID NO:38), DP-47 (SEQ ID NO:37), and JH4 (SEQ ID NO:39) (V BASE; http://vbase.mrc-cpe.cam.ac.uk/) were used to design overlapping oligonucleotides for the synthetic assembly of humanized Vκ and and VH, respectively. N-glycosylation sites with the sequence NXS/T as well as internal restriction sites Hindlll, Xbal, Sad, Apal, and <S/zI were avoided. PCR was carried out by using the Expand High Fidelity PCR System (Roche Molecular Systems). The humanized Vκ oligonucleotides were: L flank sense ( Rader, C, Ritter, G., Nathan, S., Elia, M., Gout, L, Junbluth, A.A., J. Biol. Chem. 275: 13668-13676 (2000)); h38C2Ll (sense; 5'- GAGCTCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGTGACCGCG TCACCATCACTTG-3') (SEQ ID NO: 18); h38C2L2 (antisense; 5'-
ATTCAGATATGGGCTGCCATAAGTGTGCAGGAGGCTCTGACTGGAGCGGCAAGT GATGGTGACGCGGTC-3') (SEQ ID NO: 19); h38C2L3 (sense; 5'-
TATGGCAGCCCATATCTGAATTGGTATCTCCAGAAACCAGGCCAGTCTCCTAAGC TCCTGATCTAT-3') (SEQ ID NO:20); h38C2L4 (antisense; 5'-
CTGAAACGTGATGGGACACCACTGAAACGATTGGACACTTTATAGATCAGGAGC TTAGGAGACTG-3') (SEQ ID NO:21); h38C2L5 (sense; 5'-
AGTGGTGTCCCATCACGTTTCAGTGGCAGTGGTTCTGGCACAGATTTCACTCTCA CCATCAGCAGTCTGCAACCTGAAGATTTTGCAGTG-S1) (SEQ ID NO:22); h38C2L6 (antisense; 5'-
GATCTCCACCTTGGTCCCTCCGCCGAAAGTATAAGGGAGGTGGGTGCCCTGACTA CAGAAGTACACTGCAAAATCTTCAGGTTGCAG-3') (SEQ ID NO:23); L antisense flank (C. Rader et al., J. Biol. Chem. 275:13668-13676 (2000)). The humanized VH oligonucleotides were: H flank sense (C. Rader et al., J. Biol. Chem. 275:13668-13676 (2000)); h38C2Hl (sense; 5'-
GAGGTGCAGCTGGTGGAGTCTGGCGGTGGCTTGGTACAGCCTGGCGGTTCCCTGC GCCTCTCCTGTGCAGCCTCTGGCT-3') (SEQ ID NO:24); h38C2H2 (antisense; 5'- CTCCAGGCCCTTCTCTGGAGACTGGCGGACCCAGCTCATCCAATAGTTGCTAAAG GTGAAGCCAGAGGCTGCACAGGAGAG-3') (SEQ ID NO:25); h38C2H3 (sense; 5'- TCTCCAGAGAAGGGCCTGGAGTGGGTCTCAGAGATTCGTCTGCGCAGTGACAAC TACGCCACGCACTATGCAGAGTCTGTC-3') (SEQ ID NO:26); h38C2H4 (antisense; 5'- CAGATACAGCGTGTTCTTGGAATTGTCACGGGAGATGGTGAAGCGGCCCTTGAC AGACTCTGCATAGTGCGTG-3') (SEQ ID NO:27); h38C2H5 (sense; 5'- CAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGCGCGCCGAGGACAC GGGCATTTATTACTGTAAAACG-S') (SEQ ID NO:28); h38C2H6 (antisense; 5f- TGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTAGCTGAAACTGTAGAAGTA CGTTTTACAGTAATAAATGCCCGTG-3') (SEQ ID NO.29); H flank antisense (C. Rader et al., J. Biol. Chem. 275:13668-13676 (2000)). Following assembly, humanized Vκ and VH were fused to human Cκ and C^l, respectively, and the resulting light chain and heavy chain fragment were fused and Sfil-cloned into phagemid vector pComb3X as described (C. Rader et al, J. Biol. Chem. 275:13668-13676 (2000); CF. Barbas 3rd et al., Phage Display: A laboratory manual, Cold Spring Harbor Laboratory, Cold Spring Harbor N.Y. (2001)). To enrich for clones with the correct h38C2 sequence, Fab were displayed on phage and selected by one round of panning against the immobilized jδ-diketone 1 (JW) conjugated to BSA. Soluble Fab were produced from single clones and tested for binding to immobilized JW- BSA by ELISA using donkey anti-human F(ab')2 polyclonal antibodies conjugated to horseradish peroxidase (Jackson ImmunoResearch Laboratories) as secondary antibody. Light chain and heavy chain encoding sequences of positive clones were analyzed by DNA sequencing using the primers OMPSEQ and PELSEQ (CF. Barbas 3rd et al., Phage Display: A laboratory manual, Cold Spring Harbor Laboratory, Cold Spring Harbor N.Y., (2001)), respectively, to confirm the assembled Vκ and VH sequences of h38C2.
[00489] Construction, production, and purification ofh38C2 IgGl — The recently described vector PIGG (C. Rader et al, FASEB J., 16:2000-2002 (2002)) was used for mammalian expression of h38C2 IgGl. The mammalian expression vector PIGG-h38c2 is illustrated in FIGURE 23. The 9kb vector comprises heavy chain γl and light chain K expression cassettes driven by a bidirectional CM promoter construct. Using primers PIGG- h38C2H (sense; 5'-
GAGGAGGAGGAGGAGGAGCTCACTCCGAGGTGCAGCTGGTGGAGTCTG-S') (SEQ ID NO:30) and GBACK (CF. Barbas 3rd et al, Phage Display: A laboratory manual, Cold Spring Harbor Laboratory, Cold Spring Harbor N.Y. (2001)), the VH coding sequence from h38C2 Fab in phagemid vector ρComb3X was amplified, digested with Sad and Apal, and cloned into the appropriately digested vector PIGG. Using primers PIGG-h38C2L (sense: 5'- GAGGAGGAGGAGGAGAAGCTTGTTGCTCTGGATCTCTGGTGCCTACGGGGAGCT CCAGATGACCCAGTCTCC-3') (SEQ ID NO:31) and LEADB (CF. Barbas 3rd et al, Phage Display: A laboratory manual, Cold Spring Harbor Laboratory, Cold Spring Harbor N.Y. (2001)) the light chain coding sequence from h38C2 Fab in phagemid vector pComb3X was amplified, digested with HindIII and Xbal, and cloned into the appropriately digested vector PIGG that already contained the h38C2 heavy chain. Intermediate and final PIGG vector constructs were amplified in E. coli strain SURE (Stratagene) and prepared with the QIAGEN Plasmid Maxi Kit. h38C2 IgGl were produced from the prepared final PIGG vector construct by transient transfection of human 293T cells using Lipofectamine 2000 (Invitrogen). Transfected cells were maintained in GIBCO 10% ultra-low IgG (<0.1%) FCS (Invitrogen) in RPMI 1640 (Hyclone) for 2 weeks. During this time, the medium was collected and replaced three times. The collected medium was subjected to affinity chromatography on a recombinant Protein A HiTrap column (Amersham Biosciences). This purification step yielded 2.45 mg h38C2 IgGl from 2,300 mL collected medium as determined by measuring the optical density at 280 nm using an Eppendorf BioPhotometer. Following dialysis against PBS in a Slide-A-Lyzer 1OK dialysis cassette (Pierce), the antibody was concentrated to 760 μg/mL using an Ultrafree-15 Centrifugal Filter Device (UFV2BTK40; Millipore), and sterile filtered through a 0.2-μm Acrodisc 13MM S-200 Syringe Filter (Pall). The final yield was 2.13 mg (87 %). Purified h38C2 IgGl was confirmed by nonreducing SDS-PAGE followed by Coomassie Blue staining.
[00490] Enaminone formation - Antibody (h38C2 IgGl or bl2 IgGl) was added to β- diketone 2 to a final concentration of 25 μM antibody binding site and 125 μM /3-diketone. This mixture was incubated at room temperature for 10 minutes before a UV spectrum was acquired on a SpectraMax Plus 384 UV plate reader (Molecular Devices) using SOFTmax Pro software (version 3.1.2).
[00491] Binding assays - Unless noted otherwise, all solutions were phosphate buffered saline (pH 7.4). A 2 x solution of either /5-diketone 2 or 3 (50 μL) was added to 50 μL of the antibody (either h38C2 or m38C2) and allowed to incubate at 37°C for 1 hr. Solutions were mixed by pipetting. Final concentrations of antibody were 0.4 to 8 nM antibody binding site, and final concentrations of /3-diketones 2 and 3 were 10"9 to 10"2M and 10"10 to 10"4M, respectively. Each well of a Costar 3690 96-well plate (Corning) was coated with 100 ng of the BSA conjugate of β-diketone 1 in TBS. Wells were then blocked with 3% (w/v) BSA in TBS. Then, 50 μL of the antibody/β-diketone mixture was added, followed by 50 μL of a 1:1,000 dilution of either goat anti-human Fc IgG polyclonal antibodies (Pierce) or rabbit anti-mouse Fc IgG polyclonal antibodies (Jackson ImmunoResearch Laboratories) conjugated to horseradish peroxidase. This was followed by 50 μL ABTS substrate solution. Between each addition, the plate was covered, incubated at 37°C for 1 hr, and then washed five times with deionized H2O. The absorbance at 405 nm was monitored as described above until the reaction with no /3-diketone reached an appropriate value (0.5 < A405 < 1.0). For each well, the fractional inhibition of ELISA signal (VJ) was calculated using equation i:
Figure imgf000180_0001
where A0 is the ELISA absorbance obtained in the absence of /3-diketone and Ai is the absorbance obtained in the presence of /3-diketone. For monovalent binding proteins, the fraction of antibody bound to soluble /3-diketone (f) is equal to v,. However, the IgG antibody is bivalent, and the ELISA signal is inhibited only by the presence of doubly liganded antibody and not by monovalent binding. Therefore, the Stevens correction for a bivalent antibody was used:
JΪ - OO* (ϋ) ,
The following relationship was used to determine the apparent equilibrium dissociation constant (modified from [ref. 37]): f\ + (fmax -fmin)(l + K0Za0)'1 (Ui) where ao corresponds to the total /3-diketone concentration, Ku is the equilibrium dissociation constant, and/m-B &ndfmax represent the experimentally determined values when the antibody binding sites are unoccupied or saturated, respectively. Because this equation is only valid when the Ku values are at least 10 x higher than the antibody concentration, it was verified that the KB values determined from equation iii met this criterion. Data were fit using a nonlinear least-squares fitting procedure of KaleidaGraph (version 3.0.5, Abelbeck software) with Ku, fmax, and/nin as the adjustable parameters and normalized using equation iv:
[00492] EXAMPLE 28:
[00493] The BAMVEC cell migration assay and Matrigel plug angiogenesis assay were peformed on the following compounds according the protocols detailed above. Compounds and their corresponding assay results are presented. Antibody is h38c2 IgGl.
[00494] Compound-1
Figure imgf000181_0001
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/Kg, twice a week dose
[00495] Compound-2
Figure imgf000181_0002
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 3 mg/Kg, twice a week dose
[00496] Compoυnd-3
Pne)-Va|-(D-a||o|le)-Thr-Nva-|le-Arg-pi'θ-CONHEt
Figure imgf000181_0003
BAMVEC Migration IC50 <100 μM Matrigel plug angiogenesis assay: >35% inhibition at 3 mg/Kg, twice a week dose
[00497] Compound-4
Figure imgf000181_0004
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay = 20% inhibition at 10 mg/Kg, twice a week dose [00498] Compound-5
Figure imgf000182_0001
BAMVEC Migration IC50 = <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/Kg, twice a week dose
[00499] Compound-6
Figure imgf000182_0002
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/Kg, twice a week dose
[00500] Compound-7
Figure imgf000182_0003
BAMVEC Migration IC50 <100 μM
[00501] Compound 8
Figure imgf000183_0001
BAMVEC Migration IC50<100 μM Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/kg dose
[00502] Compound 9
Figure imgf000183_0002
BAMVEC Migration IC50 <100 μM Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/kg, twice a week dose >35% inhibition at 3 mg/Kg, twice a week dose
[00503] Compound 10
Figure imgf000183_0003
BAMVEC Migration IC50 <100 μM Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/Kg, twice a week dose >35% inhibition at 3 mg/Kg, twice a week dose
[00504] Compound 11
Figure imgf000184_0001
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: 35% inhibition at 10 mg/Kg, twice a week dose
[00505] Compound 12
Figure imgf000184_0002
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/Kg
[00506] Compound 13
Figure imgf000184_0003
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay: >35% inhibition at 10 mg/kg dose
[00507] Compound 14
Figure imgf000185_0001
Matrigel plug angiogenesis assay: >35% inhibition at 3 mg/kg dose
[00508] Compound 15
B
Figure imgf000185_0002
[00509] Compound 16
Figure imgf000185_0003
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay:>35% inhibition with 10 mg/Kg dose
[00510] Compound 17
Figure imgf000185_0004
BAMVEC Migration IC50 <100 μM [00511] Compound 18
Figure imgf000186_0001
BAMVEC Migration IC50 <100 μM [00512] Comυound 19
Figure imgf000186_0002
BAMVEC Migration IC50 <100 μM [00513] Compound 20
Figure imgf000186_0003
BAMVEC Migration IC50 < 100 μM
[00514] Compound 21
Figure imgf000186_0004
BAMVEC Migration IC50 <100 μM
Matrigel plug angiogenesis assay.
>35% inhibition at 10 mg/kg, twice a week dose, >35% inhibition at 3 mg/Kg, twice a week dose
[00515] EXAMPLE 29: Synthesis of:
Figure imgf000187_0001
is provided in FIGURE 28.
[00516] The invention thus has been disclosed broadly and illustrated in reference to representative embodiments described above. Those skilled in the art will recognize that various modifications can be made to the present invention without departing from the spirit and scope thereof. AU publications, patent applications, and issued patents, are herein incorporated by reference to the same extent as if each individual publication, patent application or issued patent were specifically and individually indicated to be incorporated by reference in its entirety. Definitions that are contained in text incorporated by reference are excluded to the extent that they contradict definitions in this disclosure.

Claims

1. A compound having the formula:
L - [AA targeting agent]
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ JD NO:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6); R1-Sar-Phe-Val-(D-alloIle)-Tlτr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:8); R2-Glu-Gly-Val-(D-alloIle)-Th--Nva-Ile-Arg-Pro-R3 (SEQ ID N0:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly- Val-(D-Ile)-Thr- Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R^SaT-GIy-VaI-(D-IIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH35 NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH35 NHC(O)CH(CH3)CH2CH35 NHC(O)C6H5, NH(CH3)C(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH3,C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L is a linker moiety having the formula -X-Y-Z, wherein:
X is attached to the amino end, the carboxy end, a GIu side chain, a Lys side chain, or a Thr side chain of the AA targeting agent, is substituted or unsubstituted, and is selected from -R22-P- R23- or -R22-P-R21-P'- R23-, wherein:
P and P' are each independently a polymer selected from the group consisting of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly-N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N5N-diethylaminoacrylate)5 poly(aminomethacrylate)5 poly(N-methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), poly(N,N-dimethyl aminomethacrylate), poly(N,N-diethyl aminomethacrylate), poly(ethyleneimine), polymers of quaternary amines, such as poly(N,N,N-trimethylaminoacrylate chloride), poly(methyacrylamidopropyltrimethyl ammonium chloride), proteoglycans such as chondroitin sulfate-A (4-sulfate) chondroitin sulfate-C (6-sulfate) and chondroitin sulfate-B, polypeptides such as polyserine, polythreonine, polyglutamine, natural or synthetic polysaccharides such as chitosan, hydroxy ethyl cellulose, and lipids;
R21, R22, and R23 are each independently a covalent bond, -O-, -S-, -NRb-5 substituted or unsubstituted straight or branched chain C1-10 alkylene, substituted or unsubstituted straight or branched chain C1-10 heteroalkylene, substituted or unsubstituted straight or branched chain C2-10 alkenylene, or substituted or unsubstituted C2-10 heteroalkenylene;
Rb, at each occurrence, is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl;
R21, R22, and R23 are selected such that the backbone length of X remains about 200 atoms or less;
Y is a recognition group comprising at least a ring structure; and
Z is a reactive group that is capable of forming a covalent bond with an amino acid side chain in a combining site of an antibody.
2. The compound according to claim 1, wherein the backbone length of X is 1- 50 atoms.
3. The compound according to claim 1, wherein the backbone length of X is 1-25 atoms.
4. The compound according to claim 1 wherein the backbone length of X is 1-10 atoms.
5. The compound accoding to claim 1, wherein Y has the optionally substituted formula
Figure imgf000191_0001
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or f are simultaneously nitrogen.
6. The compound according to claim 1, wherein Z is substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
7. A compound having the formula:
L - [AA targeting agent]
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID NO:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6);
R1-Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R1-Sar-Gly-Val-(D-Ile)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5OMe, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L is a linker moiety having the formula -X-Y-Z-, wherein:
X is attached to the amino end, the carboxy end, a GIu side chain, a Lys side chain, or a Thr side chain of the AA targeting agent, is substituted or unsubstituted and is selected from -R22 - [CH2-CH2-O]t - R23-, -R22-cycloalkyl- R23-5 -R22-aryl- R23-, or -R22-heterocyclyl-R23-, wherein: R22 and R23 are independently a covalent bond, -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-50 alkylene, substituted or unsubstituted straight or branched chain C1-5O heteroalkylene, substituted or unsubstituted straight or branched chain C2-50 alkenylene, or substituted or unsubstituted C2-50 heteroalkenylene;
Rb, at each occurrence, is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl;
t = 2-50;
00 O"\ and the size of R and R are such that the backbone length of X remains about 200 atoms or less;
Y is a recognition group comprising at least a ring structure; and
Z is a reactive group that is capable of forming a covalent bond with an amino acid side chain in a combining site of an antibody.
8. The compound according to claim 7, wherein:
R22 is -(CH2)V-, -(CH2)U-C(O)-(CH2)V-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-C(S)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2)U-O-(CH2)V-, -(CH2)u-S(0)o-2-(CH2)v-, -(CH2)u-S(O)0-2-NRb-(CH2)v-5 or -(CH2)u-P(O)(ORb)-O-(CH2)v-;
R23 is -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain Ci-5O alkylene, substituted or unsubstituted straight or branched chain Ci-50 heteroalkylene, substituted or unsubstituted straight or branched chain C2-50 alkenylene, or substituted or unsubstituted C2-S0 heteroalkenylene;
u and v are independently 0-20;
and the size of R22 and R23 are such that the backbone length of X remains about 200 atoms or less.
9. The compound according to claim 8, wherein R is -(CH2)V-, ,-C(O)-(CH2)V-, -(CH2VC(O)-O-(CH2)V-, -(CH2)u-C(O)-NRb-(CH2)v-,
-(CH2)U-NR bD-(CH2)V-, -(CH2VO-(CH2V, -(CH2)u-S(O)0-2-(CH2)v-, or -(CH2)u-S(O)0-2-NRb-(CH2)v-.
10. The compound according to claim 8, wherein R is -(CH2)U-C(O)-(CH2)V-, -(CH2VC(O)-O-(CH2V, or -(CH2)u-C(O)-NRb-(CH2)v-.
11. The compound according to claim 8, wherein R23 is a substituted or unsubstituted, straight or branched chain C1-S0 alkylene or a substituted or unsubstituted, straight or branched chain C1-50 heteroalkylene.
12. The compound according to claim 8, wherein R23 is a substituted or unsubstituted, straight or branched chain C1-5O heteroalkylene.
13. The compound according to claim 8, wherein R23 has the structure:
Figure imgf000194_0001
wherein p is 2-45; w is 1-20; r is 1-20; s is 0-20; and Rb at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl.
14. The compound according to claim 13, wherein X has the structure:
Figure imgf000194_0002
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1- 100 atoms.
15. The compound according to claim 14, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is atoms is 1-50.
16. The compound according to claim 14, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1-15 atoms.
17. The compound according to claim 13, wherein X has the structure:
Figure imgf000195_0001
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-100 atoms.
18. The compound according to claim 17, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-50 atoms.
19. The compound according to claim 17, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-15 atoms.
20. The compound according to claim 13, wherein X has the structure:
Figure imgf000195_0002
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1- 100 atoms.
21. The compound according to claim 20, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1-50 atoms.
22. The compound according to claim 20, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1-15 atoms.
23. The compound according to claim 13, wherein X has the structure:
Figure imgf000195_0003
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-100 atoms.
24. The compound according to claim 23, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-50 atoms.
25. The compound according to claim 23, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-15 atoms.
26. The compound according to claim 13, wherein X has the structure:
Figure imgf000196_0001
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1- 100 atoms.
27. The compound according to claim 26, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1-50 atoms.
28. The compound according to claim 26, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is 1-15 atoms.
29. The compound according to claim 13, wherein X has the structure:
Figure imgf000196_0002
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-100 atoms.
30. The compound according to claim 29, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-50 atoms.
31. The compound according to claim 29, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is 1-15 atoms.
32. The compound according to claim 13, wherein the ring structure Y has the optionally substituted structure:
Figure imgf000197_0001
/
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or fare simultaneously nitrogen.
33. The compound according to claim 32, wherein a, b, c, d, and e in the ring structure are each carbon.
34. The compound according to claim 33, wherein the ring structure Y is phenyl.
35. The compound according to claim 16, wherein the ring structure Y is phenyl. r
36. The compound according to claim 19, wherein the ring structure Y is phenyl.
37. The compound according to claim 22, wherein the ring structure Y is phenyl.
38. The compound according to claim 25, wherein the ring structure Y is phenyl.
39. The compound according to claim 28, wherein the ring structure Y is phenyl.
40. The compound according to claim 13, wherein Z is substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
41. The compound according to claim 40, wherein the at least one substituent is selected from the group consisting of substituted 1,3-diketones or acyl beta- lactams.
42. The compound according to claim 40, wherein Z is selected from the group consisting of alkyl substituted 1,3 diketones or alkyl substituted acyl beta lactams.
43. The compound according to claim 42, wherein Z has the structure:
Figure imgf000198_0001
wherein q=0-5.
44. The compound according to claim 35, wherein Z has the structure:
Figure imgf000198_0002
wherein q=0-5.
45. The compound according to claim 36, wherein Z has the structure:
Figure imgf000198_0003
wherein q=0-5.
46. The compound according to claim 37, wherein Z has the structure:
Figure imgf000198_0004
wherein q=0-5.
47. The compound according to claim 38, wherein Z has the structure:
Figure imgf000199_0001
wherein q=0-5.
48. The compound according to claim 39, wherein Z has the structure:
Figure imgf000199_0002
wherein q=0-5.
49. A compound having the formula
L - [AA targeting agent] .
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R2-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R1-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ED NO.10);
R^LyS-GIy-VaI-(D-BlIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID N0:8); and
R1-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5OMe, an amino protecting group, a lipid fatty acid group or a carbohydrate; R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L is a linker moiety selected from the group consisting of:
Figure imgf000200_0001
Figure imgf000201_0001
wherein Rb, at each occurrence, is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl;
u=0-5; v=0-5; t=l-6; w=l-5; p=l-5; and q=0-5; and
the left side of L is connected to the amino terminus, the carboxy terminus, a Thr side chain, or a Lys side chain of the [AA targeting agent].
50. The compound of claim 49, wherein u is 0; v is 0; t is 1, 2, 3, 4, 5, or 6; w is 1 or 2; s is 1 or 2; and q is 2 or 3.
51. A compound having the structure :
Figure imgf000201_0002
or
Figure imgf000202_0001
wherein:
v=0; t=l-6; w=l; p=3; q=2; Rb is hydrogen; and
AA1-AA2-AAn is the peptide SaT-GIy-VaI-(D-ElIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 1); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
52. A compound having the structure:
Figure imgf000202_0002
or
Figure imgf000202_0003
wherein:
v=0; t=l-6; w=l; p=3; q=2; Rb is hydrogen; and
AA1-AA2-AAn is the peptide PrO-GIy-VaI-(D-ElIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 10); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5, C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
53. A compound having the structure:
Figure imgf000203_0001
or
Figure imgf000203_0002
wherein:
v=0; t=l-6; w=l; p=3; q=2; Rb is hydrogen; and
AAi-AA2-AAn is the peptide Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile- Arg-Pro-R3 (SEQ ID NO: 12); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH3,C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
54. A compound having the structure:
Figure imgf000203_0003
or
Figure imgf000203_0004
wherein:
v=0; t=l-6; w=l; p=3; q=2; Rb is hydrogen; and
AA1-AA2-AAn is the peptide Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:8); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
55. A compound having the formula:
L - [AA targeting agent]
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID N0:3);
R1-Sar-Gly-Val-(D-aIloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID N0:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID N0:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID N0:6); R'-Sar-Phe-VaHD-alloneVThr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloπe)-Thr-Nva-πe-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R^SaT-GIy-VaI-(D-IIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO:17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5OMe5 an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH35 NHC(O)CH2CH35 NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH35 NHC(O)CH2CH2CH2CH35 NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH35 C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L is a linker moiety having the formula -X-Y-Z-, wherein:
X is:
Figure imgf000205_0001
wherein v and w are selected such that the backbone length of X is 6-12 atoms;
Y is a recognition group comprising at least a ring structure; and
Z is a reactive group that is capable of forming a covalent bond with an amino acid side chain in a combining site of an antibody.
56. The compound according to claim 55, wherein the ring structure Y has the optionally substituted structure:
Figure imgf000206_0001
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or fare simultaneously nitrogen.
57. The compound according to claim 56, wherein a, b, c, d, and e in the ring structure are each carbon.
58. The compound according to claim 56, wherein the ring structure Y is phenyl.
59. The compound according to claim 58, wherein Z is substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
60. The compound according to claim 58, wherein the at least one substituent is selected from the group consisting of substituted 1,3-diketones or acyl beta-lactams.
61. The compound according to claim 58, wherein Z is selected from the group consisting of alkyl substituted 1,3 diketones or alkyl substituted acyl beta lactams.
62. The compound according to claim 58, wherein Z has the structure:
Figure imgf000207_0001
wherein q=0-5.
63. A compound having the structure:
Figure imgf000207_0002
wherein:
v=l or 2; w=l or 2; q=2 or 3; Rb is hydrogen; and
AA1-AA2-AAn is the peptide Pro-Gly-Val-(D-alloIle)-Tlir-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
64. A compound having the formula:
Antibody[-L'-[AA targeting agent]] i or 2
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID N0:3); R^Sar-Gly- VaI-(D^lIoIIe)-ThT-LyS-IIe-ATg-PrO-R3 (SEQ ID NO:4); R^SaT-GIy-VaI-(D-ElIoIIe)-ThT-GIn-IIe-ATg-PrO-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6); R^Sar-Phe-VaHD-alloIle^Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R^LyS-GIy-VaI-(D-RlIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID N0:8); R^GIu-GIy-VaI-(D-ElIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID N0:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-PiO-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-PiO-R3 (SEQ ID NO: 13);
R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2^rO-(CyCIo-LeU)-VaI-(D-ElIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 15); R2-Gly-Val-(D-Ile)-Thr-Arg-Ile-Arg-R3 (SEQ ID NO: 16); End R1-Ssr-Gly-Val-(D-Ile)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)1-5OMe5 En amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH35 NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH35 NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me5 an amino protecting group, a lipid fatty acid group or a carbohydrate; and R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH35 C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
linker moiety having the formula -X-Y-Z'-, wherein:
X is attached to the amino end, the carboxy end, a GIu side chain, a Lys side chain, or a Thr side chain of the AA targeting agent, is substituted or unsubstituted, and is selected from -R22-P-R23- or -R22-P-R21-P'-R23-, wherein:
P and P' are each independently a polymer selected from the group of polyoxyalkylene oxides such as polyethylene oxide, polyethyloxazoline, poly- N-vinyl pyrrolidone, polyvinyl alcohol, polyhydroxyethyl acrylate, polyhydroxy ethylmethacrylate and polyacrylamide, polyamines having amine groups on either the polymer backbone or the polymer sidechains, such as polylysine, polyornithine, polyarginine, and polyhistidine, nonpeptide polyamines such as polyaminostyrene, polyaminoacrylate, poly(N-methyl aminoacrylate), poly(N-ethylaminoacrylate), poly(N,N-dimethyl aminoacrylate), poly(N,N-diethylaminoacrylate), poly(aminomethacrylate), poly(N-methyl amino-methacrylate), poly(N-ethyl aminomethacrylate), ρoly(N,N-dimethyl aminomethacrylate), poly(N,N-diethyl aminomethacrylate), poly(ethyleneimine), polymers of quaternary amines, such as poly(N,N,N-trimethylaminoacrylate chloride), poly(methyacrylamidopropyltrimethyl ammonium chloride), proteoglycans such as chondroitin sulfate-A (4-sulfate) chondroitin sulfate-C (6-sulfate) and chondroitin sulfate-B, polypeptides such as polyserine, polythreonine, polyglutamine, natural or synthetic polysaccharides such as chitosan, hydroxy ethyl cellulose, and lipids;
R21, R22, and R23 are each independently a covalent bond, -0-, -S-, -NRb, substituted or unsubstituted straight or branched chain C1-I0 alkylene, substituted or unsubstituted straight or branched chain C1-1Q heteroalkylene, substituted or unsubstituted straight or branched chain C2-10 alkenylene, or substituted or unsubstituted C2-10 heteroalkenylene;
Rb, at each occurrence, is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-C0-6 alkyl, or substituted or unsubstituted aryl-Co-6 alkyl; and
R21, R22, and R23 are selected such that the backbone length of X remains about 200 atoms or less
Y is a recognition group comprising at least a ring structure; and
Z' is an attachment moiety comprising a covalent link to an amino acid side in a combining site of an antibody.
65. The compound according to claim 64, wherein the backbone length of X is 1- 50 atoms.
66. The compound according to claim 64, wherein the backbone length of X is 1- 25 atoms.
67. The compound according to claim 64, wherein the backbone length of X is 1- 10 atoms.
68. The compound accoding to claim 64, wherein Y has the optionally substituted structure:
Figure imgf000210_0001
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or fare simultaneously nitrogen.
69. The compound according to claim 64, wherein Z' is substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
70. A compound having the formula:
Antibody[-L'-[AA targeting agent]] t Or2
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-Pro-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID NO:3);
R1-Sar-Gly-Val-(D-alloπe)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID NO:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Gln-Ile-Arg-Pro-R3 (SEQ ID NO:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID NO:6);
R1-Sar-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-πe-Arg-Pro-R3 (SEQ ID NO:8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:13);
R2-Pro-(2-ruryl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly- VaI-(D-IIe)-ThT- Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R^SaT-GIy-VaI-(D-IIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)I-5OMe, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
L1 is a linker moiety having the formula -X-Y-Z'-, wherein:
X is attached to the amino end, the carboxy end, a GIu side chain, a Lys side chain, or a Thr side chain of the AA targeting agent, AA targeting agent, is substituted or unsubstituted and is selected from -R22 - [CH2-CH2-OJt- R23-, -R22-cycloalkyl- R23-, -R22-aryl- R23-, or -R22-heterocyclyl-R23-, wherein:
R22 and R23 are independently a covalent bond, -0-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-50 alkylene, substituted or unsubstituted straight or branched chain C1-5O heteroalkylene, substituted or unsubstituted straight or branched chain C2-50 alkenylene, or substituted or unsubstituted C2-50 heteroalkenylene;
Rb, at each occurrence, is independently hydrogen, substituted or unsubstituted C1-1O alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-6 alkyl, or substituted or unsubstituted aryl-C0-6 alkyl; t = 2-50; and
the size of R22 and R23 are such that the backbone length of X remains about 200 atoms or less;
Y is an optionally present recognition group comprising at least a ring structure; and
Z' is an attachment moiety comprising a covalent link to an amino acid side in a combining site of an antibody.
71. The compound according to claim 70, wherein:
R22 is -(CH2)v-5 -(CH2)U-C(O)-(CH2)V-, -(CH2)U-C(O)-O-(CH2)V-, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-C(S)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2VO-(CH2)V-, -(CH2VS(O)0-HCH2V, -(CH2)u-S(O)0-2-NRb-(CH2)v-, or -(CH2)u-P(O)(ORb)-O-(CH2)v-;
R23 is -O-, -S-, -NRb-, substituted or unsubstituted straight or branched chain C1-5O alkylene, substituted or unsubstituted straight or branched chain C1-5O heteroalkylene, substituted or unsubstituted straight or branched chain C2-50 alkenylene, or substituted or unsubstituted C2-5O heteroalkenylene;
u and v are independently 0-20; and
the size of R22 and R23 are such that the backbone length of X remains about 200 atoms or less.
72. The compound according to claim 71, wherein R22 is -(CH2V, -(CH2)u-C(O)-(CH2)v-5 -(CH2)u-C(O)-O-(CH2)v-, -(CH2)u-C(O)-NRb-(CH2)v-, -(CH2)u-NRb-(CH2)v-, -(CH2VO-(CH2V, -(CH2VS(O)0-2-(CH2V5 or -(CH2)u-S(O)0-2-NRb-(CH2)v-.
73. The compound according to claim 71, wherein R22 is -(CH2)U-C(O)-(CH2)V-, -(CH2VC(O)-O-(CH2V, or -(CH2)u-C(O)-NRb-(CH2)v-.
74. The compound according to claim 71, wherein R is a substituted or unsubstituted, straight or branched chain C1-50 alkylene or a substituted or unsubstituted, straight or branched chain C1-S0 heteroalkylene.
75. The compound according to claim 71, wherein R23 is a substituted or unsubstituted, straight or branched chain C1-50 heteroalkylene.
76. The compound according to claim 71, wherein R 23 - has the structure:
Figure imgf000214_0001
wherein p is 2- 45; w is 1-20; r is 1- 20; s is 0-20; and R at each occurrence is independently hydrogen, substituted or unsubstituted C1-10 alkyl, substituted or unsubstituted C3-7 cycloalkyl-Co-ό alkyl, or substituted or unsubstituted aryl-Co-6 alkyl.
77. The compound according to claim 76, wherein X has the structure:
Figure imgf000214_0002
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 100 atoms.
78. The compound according to claim 77, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 50 atoms.
79. The compound according to claim 77, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 15 atoms.
80. The compound according to claim 76, wherein X has the structure
Figure imgf000214_0003
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 100 atoms.
81. The compound according to claim 80, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 50 atoms.
82. The compound according to claim 80, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 15 atoms.
83. The compound according to claim 76, wherein X has the structure:
Figure imgf000215_0001
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 100 atoms.
84. The compound according to claim 83, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 50 atoms.
85. The compound according to claim 83, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 15 atoms.
86. The compound according to claim 76, wherein X has the structure:
Figure imgf000215_0002
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 100 atoms.
87. The compound according to claim 86, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 50 atoms.
88. The compound according to claim 86, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 15 atoms.
89. The compound according to claim 76, wherein X has the structure:
Figure imgf000216_0001
wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 100 atoms.
90. The compound according to claim 89, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 50 atoms.
91. The compound according to claim 89, wherein the values of u, v, t, w, and p are selected such that the backbone length of X is less than 15 atoms.
92. The compound according to claim 76, wherein X has the structure
Figure imgf000216_0002
wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 100 atoms.
93. The compound according to claim 92, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 50 atoms.
94. The compound according to claim 92, wherein the values of u, v, t, r, and s are selected such that the backbone length of X is less than 15 atoms.
95. The compound according to claim 76, wherein the ring structure Y has the optionally substituted structure:
Figure imgf000216_0003
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z' independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or f are simultaneously nitrogen.
96. The compound according to claim 95, wherein a, b, c, d, and e in the ring structure are each carbon.
97. The compound according to claim 95, wherein the ring structure Y is phenyl.
98. The compound according to claim 79, wherein the ring structure Y is phenyl.
99. The compound according to claim 82, wherein the ring structure Y is phenyl.
100. The compound according to claim 85, wherein the ring structure Y is phenyl.
101. The compound according to claim 88, wherein the ring structure Y is phenyl.
102. The compound according to claim 91, wherein the ring structure Y is phenyl.
103. The compound according to claim 76, wherein Z' is substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, ahydrazide, or an epoxide..
104. The compound according to claim 103, wherein Z' is selected from the group consisting of substituted 1,3-diketones or acyl beta-lactams.
105. The compound according to claim 103, wherein Z' is selected from the group consisting of alkyl substituted 1,3 diketones or alkyl substituted acyl beta lactams.
106. The compound according to claim 104, wherein Z' has the structure:
Figure imgf000217_0001
or
Figure imgf000218_0001
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody .
107. The compound according to claim 98, wherein Z' has the structure:
Figure imgf000218_0002
or
Figure imgf000218_0003
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody.
108. The compound according to claim 99, wherein Z' has the structure:
Figure imgf000218_0004
or
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody.
109. The compound according to claim 100, wherein Z' has the structure:
Figure imgf000219_0001
or
Figure imgf000219_0002
wherein q=0-5.
110. The compound according to claim 101, wherein Z' has the structure:
Figure imgf000219_0003
or
Figure imgf000219_0004
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody.
111. The compound according to claim 102, wherein Z' has the structure:
Figure imgf000219_0005
or
Figure imgf000220_0001
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody.
112. The compound according to claim 106, wherein said antibody is a full length antibody, Fab, Fab', F(ab')2, Fv, dsFv, scFv, VH, diabody, or minibody comprising VH and VL domains from h38c2 .
113. The compound according to claim 112, wherein said antibody is a full length antibody.
114. The compound according to claim 106, wherein said antibody is h38c2 IgGl.
115. The compound according to claim 106, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
116. The compound according to claim 107, wherein said antibody is h38c2 IgGl .
117. The compound according to claim 107, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
118. The compound according to claim 108, wherein said antibody is h38c2 IgGl .
119. The compound according to claim 108, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
120. The compound according to claim 109, wherein said antibody is h38c2 IgGl.
121. The compound according to claim 109, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
122. The compound according to claim 110, wherein said antibody is h38c2 IgGl.
123. The compound according to claim 110, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl5 IgG2, IgG3, and IgG4.
124. The compound according to claim 111, wherein said antibody is h38c2 IgGl .
125. The compound according to claim 111, wherein said antibody comprises VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
126. A compound having the structure selected from the group:
Figure imgf000221_0001
1 or2
Figure imgf000221_0002
Figure imgf000222_0001
wherein:
v =0-5; 1=1-6; w=l-5; ρ=l-5; and q=0-5;
R at each occurrence is independently hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of an antibody, said Antibody further comprising VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4; and
AA1-AA2 — AAn is a peptide selected from the group consisting of:
Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:8);
Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); and
Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12); wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5, C(O)NHCH2CH2OCH3,C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
127. The compound of claim 106, wherein u is O; v is O; t is 1, 2, 3, 4, 5, or 6; w is 1 or 2; p is 1 or 2; and s is 3.
128. The compound of claim 107, wherein Antibody is h38c2 IgGl .
129. A compound having the structure:
Figure imgf000223_0001
or
Figure imgf000223_0002
wherein:
v =0; t=l-6; w=l; p=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Sar-Gly-Val-(D-alloIle)-Tlτr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
130. A compound having the structure:
Figure imgf000223_0003
or
Figure imgf000224_0001
wherein:
v =0; t=l-6; w=l; ρ=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl and
AA1-AA2-AAn is the peptide PrO-GIy-VaI-(D-ElIoIIe)-ThT-NVa-IIe-ATg-PrO-R3 (SEQ ID NO: 10), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
131. A compound having the structure:
Figure imgf000224_0002
or
Figure imgf000224_0003
wherein:
v =0; t=l-6; w=l; ρ=3; and q=2;
Rb is hydrogen; Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva- Ile-Arg-Pro-R3 (SEQ ID NO: 12), wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
132. A compound having the structure:
Figure imgf000225_0001
or
Figure imgf000225_0002
wherein:
v=0; t=l-6; w=l; p=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:8), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5, C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
133. A compound having the structure selected from the group :
Figure imgf000226_0001
1 or 2
Figure imgf000226_0002
l or 2
Figure imgf000226_0003
wherein:
v=0-5; 1=1-6; r=l-5; s=l-5; and q=0-5;
R are each hydrogen; Antibody-N- is a covalent bond to a side chain in a combining site of an antibody, said Antibody further comprising VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4; and
AA1-AA2 — AAn is a peptide selected from the group consisting of:
Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 8);
Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); and
Pro-(3 ,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12), wherein
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5, C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
134. The compound of claim 133, wherein v is O; t is 1, 2, 3, 4, 5, or 6; r is 1 or 2; s is 3; and q is 2.
135. The compound of claim 133, wherein Antibody is h38c2 IgGl.
136. A compound having the structure :
Figure imgf000227_0001
wherein:
v=0; t=l-6; r=l-2; s=3; and q=2;
Rb is hydrogen; Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 1), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH35 C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH39C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
137. A compound having the structure:
Figure imgf000228_0001
wherein:
v=0; t=l-6; r=l-2; s=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
138. A compound having the structure :
Figure imgf000229_0001
wherein:
V=O; t=l-6; r=l-2; s=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva- Ile-Arg-Pro-R3 (SEQ ID NO: 12), wherein:
R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
139. A compound having the structure:
Figure imgf000229_0002
wherein:
V=O; t=l-6; r=l-2; s=3; and q=2;
Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Lys-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:8), wherein: R3 is COOH, C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
140. A compound having the formula:
Antibody[-L'-[AA targeting agent]] i Or 2
wherein:
[AA targeting agent] is a peptide selected from the group consisting of:
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO:1);
R2-PiO-Phe-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID N0:2);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Nva-Lys-Arg-Pro-R3 (SEQ ID N0:3);
R1-Sar-Gly-Val-(D-alloIle)-Thr-Lys-Ile-Arg-Pro-R3 (SEQ ID N0:4); R1-Sar-Gly-Val-(D-alloIle)-Thr-Ghi-Ile-Arg-Pro-R3 (SEQ ID N0:5);
R1-Sar-Gly-Val-(D-alloIle)-Thr-(α-Ally-Gly)-Ile-Arg-Pro-R3 (SEQ ID N0:6);
R1-Sar-Phe-Val-(D-alloIle)-Tlir-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 7); R2-Lys-Gly-Val-(D-alloIle)-Thr-Nva-ne-Arg-Pro-R3 (SEQ ID N0:8); R2-Glu-Gly-Val-(D-alloIle)-Thr-Nva-ne-Arg-Pro-R3 (SEQ ID N0:9); R2-Pro-Gly-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10); R2-Pro-(4-Cyano-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 11); R2-Pro-(3,4-Dimethoxy-Phe)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 12);
R2-Pro-(3-(4-thiazolyl)-L-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 13); R2-Pro-(2-furyl-Ala)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 14); R2-Pro-(Cyclo-Leu)-Val-(D-alloIle)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 15); R2-Gly- VaI-(D-He)-ThT- Arg-Ile-Arg-R3 (SEQ ID NO: 16); and R1-Sar-Gly-Val-(D-Ile)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 17); wherein:
R1 is NH(CH3), N(CH3)C(O)CH3, N(CH3)C(O)CH2CH3, N(CH3)C(O)CH2CH2CH35 N(CH3)C(O)CH(CH3)CH3, N(CH3)C(O)CH2CH2CH2CH35 N(CH3)C(O)CH(CH3)CH2CH3, N(CH3)C(O)C6H5, N(CH3)C(O)CH2CH2(CH2CH2O)I-5OMe, an amino protecting group, a lipid fatty acid group or a carbohydrate;
R2 is NH2, NHC(O)CH3, NHC(O)CH2CH3, NHC(O)CH2CH2CH3, NHC(O)CH(CH3)CH3, NHC(O)CH2CH2CH2CH3, NHC(O)CH(CH3)CH2CH3, NHC(O)C6H5, NHC(O)CH2CH2(CH2CH2O)1-5Me, an amino protecting group, a lipid fatty acid group or a carbohydrate; and
R3 is COOH5 C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH35 C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH35 C(O)NHOCH2CH3, a carboxy protecting group, a lipid fatty acid group or a carbohydrate; and
linker moiety having the formula -X-Y-Z'-, wherein:
X has the structure:
Figure imgf000231_0001
Figure imgf000231_0002
wherein v and w are selected such that the backbone length of X is 6-12 atoms;
Y is a recognition group comprising at least a ring structure; and Z' is an attachment moiety comprising a covalent link to an amino acid side in a combining site of an antibody.
141. The compound according to claim 140, wherein the ring structure Y has the optionally substituted structure
Figure imgf000232_0001
wherein a, b, c, d, and e are independently carbon or nitrogen; f is carbon, nitrogen, oxygen, or sulfur; Y is attached to X and Z independently at any two ring positions of sufficient valence; and no more than four of a, b, c, d, e, or fare simultaneously nitrogen.
142. The compound according to claim 141, wherein a, b, c, d, and e in the ring structure are each carbon.
143. The compound according to claim 141, wherein the ring structure Y is phenyl.
144. The compound according to claim 143, wherein Z' is a substituted alkyl, substituted cycloalkyl, substituted aryl, substituted arylalkyl, substituted heterocyclyl, or substituted heterocyclylalkyl, wherein at least one substituent is a 1,3-diketone moiety, an acyl beta-lactam, an active ester, an alpha-haloketone, an aldehyde, a maleimide, a lactone, an anhydride, an alpha-haloacetamide, an amine, a hydrazide, or an epoxide.
145. The compound according to claim 144, wherein the at least one substituent is selected from the group consisting of substituted 1,3-diketones or acyl beta-lactams.
146. The compound according to claim 141, wherein Z1 is selected from the group consisting of alkyl substituted 1,3 diketones or alkyl substituted acyl beta lactams.
147. The compound according to claim 141, wherein Z1 has the structure:
Figure imgf000232_0002
or Antibody
wherein q=0-5 and Antibody-N- is a covalent bond to a side chain in a combining site of an antibody.
148. A compound having the structure:
Figure imgf000233_0002
l or 2
wherein:
v=l or 2; w=l or 2; q=2 or 3; and Rb is hydrogen;
Antibody-N- is a covalent bond to a side chain in a combining site of h38c2 IgGl; and
AA1-AA2-AAn is the peptide Pro-Gly-Val-(D-allone)-Thr-Nva-Ile-Arg-Pro-R3 (SEQ ID NO: 10), wherein:
R3 is COOH5 C(O)NH2, C(O)NH(CH3), C(O)NHCH2CH3, C(O)NHCH2CH2CH3, C(O)NHCH(CH3)CH3, C(O)NHCH2CH2CH2CH3, C(O)NHCH(CH3)CH2CH3, C(O)NHC6H5,
C(O)NHCH2CH2OCH35C(O)NHOCH3, C(O)NHOCH2CH3, or a carboxy protecting group.
149. A compound having the structure:
Figure imgf000233_0003
or
Figure imgf000234_0001
l or 2
wherein Antibody is an antibody comprising the VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
150. The compound of claim 149, wherein Antibody is h38c2 IgGl.
151. A compound having the structure :
Figure imgf000234_0002
1 or 2
or
Figure imgf000234_0003
l or 2
wherein Antibody is an antibody comprising the VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
152. The compound of claim 151, wherein Antibody is h38c2 IgGl.
153. A compound having the structure:
Figure imgf000235_0001
1 or 2
or
Figure imgf000235_0002
l or 2
wherein Antibody is an antibody comprising the VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG25 IgG3, and IgG4.
154. The compound of claim 153, wherein Antibody is h38c2 IgGl.
155. A compound having the structure:
Figure imgf000235_0003
1 or 2
or
Figure imgf000235_0004
l or 2
wherein Antibody is an antibody comprising the VH and VL domains from h38c2 and a constant domain selected from the group consisting of IgGl, IgG2, IgG3, and IgG4.
156. The compound of claim 155, wherein Antibody is h38c2 IgGl .
157. A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 148.
158. A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 150.
159. A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 152.
160. A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 154.
161. A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 156.
162. The pharmaceutical composition of claim 157, further comprising a therapeutically effective amount of one or more chemotherapeutic agent.
163. The pharmaceutical composition of claim 162, wherein the chemotherapeutic agent is a compound selected from the group consisting of 5-Flurouracil, irinotecan, oxilaplatin, bevacizumab, and cetuximab.
164. The pharmaceutical composition of claim 158, further comprising a therapeutically effective amount of one or more chemotherapeutic agent.
165. The pharmaceutical composition of claim 164, wherein the chemotherapeutic agent is a compound selected from the group consisting of 5-Flurouracil, irinotecan, oxilaplatin, bevacizumab, and cetuximab.
166. The pharmaceutical composition of claim 159, further comprising a therapeutically effective amount of one or more chemotherapeutic agent.
167. The pharmaceutical composition of claim 166, wherein the chemotherapeutic agent is a compound selected from the group consisting of 5-Flurouracil, irinotecan, oxilaplatin, bevacizumab, andr cetuximab.
168. The pharmaceutical composition of claim 160, further comprising a therapeutically effective amount of one or more chemotherapeutic agent.
169. The pharmaceutical composition of claim 168, wherein the chemotherapeutic agent is a compound selected from the group consisting of 5-Flurouracil, irinotecan, oxilaplatin, bevacizumab, andr cetuximab.
170. A method of producing an AA targeting compound, comprising covalently linking a compound of claim 51 with h38c2 IgGl.
171. A method of producing an AA targeting compound, comprising covalently linking a compound of claim 52 with h38c2 IgGl
172. A method of producing an AA targeting compound, comprising covalently linking a compound of claim 63 with h38c2 IgGl.
173. A method of inhibiting or reducing angio genesis, comprising administering to a cell an effective amount of the compound of claim 1.
174. A method for treating or preventing a disease or symptom associated with an angiogenic disorder, comprising administering to the subject a therapeutically effective amount of the compound of claim 1.
175. A method of treating an angiogenesis-dependent condition in a mammal, comprising administering to said mammal: a therapeutically-effective amount of an AA targeting compound; in a combination treatment regimen including chemotherapy.
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