WO2006010040A2 - Antibacterial agents - Google Patents

Antibacterial agents Download PDF

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Publication number
WO2006010040A2
WO2006010040A2 PCT/US2005/024350 US2005024350W WO2006010040A2 WO 2006010040 A2 WO2006010040 A2 WO 2006010040A2 US 2005024350 W US2005024350 W US 2005024350W WO 2006010040 A2 WO2006010040 A2 WO 2006010040A2
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WO
WIPO (PCT)
Prior art keywords
oxo
pyrido
dihydro
compound
thiazin
Prior art date
Application number
PCT/US2005/024350
Other languages
French (fr)
Other versions
WO2006010040A3 (en
Inventor
William Henry Miller
Meagan B. Rouse
Mark Andrew Seefeld
Original Assignee
Glaxo Group Limited
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Glaxo Group Limited filed Critical Glaxo Group Limited
Priority to US11/570,443 priority Critical patent/US20080194547A1/en
Priority to EP05764670A priority patent/EP1773847A2/en
Priority to JP2007520555A priority patent/JP2008505926A/en
Publication of WO2006010040A2 publication Critical patent/WO2006010040A2/en
Publication of WO2006010040A3 publication Critical patent/WO2006010040A3/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/10Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing aromatic rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/47Quinolines; Isoquinolines
    • A61K31/473Quinolines; Isoquinolines ortho- or peri-condensed with carbocyclic ring systems, e.g. acridines, phenanthridines
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D519/00Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
    • Y02P20/00Technologies relating to chemical industry
    • Y02P20/50Improvements relating to the production of bulk chemicals
    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Definitions

  • This invention relates to novel compounds, compositions containing them, their use as antibacterials, and processes for their preparation.
  • This invention comprises compounds of the formula (I), as described hereinafter, which are useful in the treatment of bacterial infections.
  • This invention is also a pharmaceutical composition comprising a compound according to formula (I) and a pharmaceutically acceptable carrier.
  • This invention is also processes for the preparation of compounds of formula (I), as well as processes for the preparation of intermediates ' useful in the synthesis of compounds of formula (I).
  • This invention is also a method of treating bacterial infections in mammals, particularly in humans.
  • This invention provides a compound of formula (I) or a pharmaceutically acceptable salt, solvate or derivative thereof:
  • Z 1 , Z 3 , and Z 4 are independently N or CR ;
  • Z 2 , Z 5 , and Z 6 are each CR 1a ;
  • R 1 and R 1a are independently at each occurrence hydrogen; cyano; halogen; hydroxy; (C-
  • W 1 , W 2 , and W 3 are each CR 4 R 5 ;
  • R 1b and R 1d are independently at each occurrence hydrogen, trifluoromethyl; (C 1 . 6 )alkyl; (C 2 . 6 )alkenyl; (C ⁇ alkoxycarbonyl; (d ⁇ alkylcarbonyl; (C 2 . 6 )alkenyloxycarbonyl; aryl; aralkyl; (C 3 .a)cycloalkyl; heterocyclyl; or heterocyclylalkyl; R 2 . R 3 , R 4 , Rs, and R 6 are independently hydrogen; thiol; (d. 6 )alkylthio; halogen; trifluoromethyl; azido; (d. 6 )alkyl; (C 2 .
  • R 1c and R 1c' are independently at each occurrence hydrogen; (d. 6 )alkyl; aralkyl; aryl; heterocyclyl; heterocyclylalkyl; or together with the nitrogen that they are attached torn an aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring (wherein said aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring are optionally substiuted with from 1 to 3 substituents selected from halogen, hydroxy; cyano; nitro; (C 1 . 6 )alkyl; and aryl);
  • n' is O or 1 ;
  • n and n" are independently and at each occurrence 0, 1 , or 2;
  • R 7 is a substituted or unsubstituted bicyclic carbocyclic or heterocyclic ring system (A):
  • X is C or N when part of an aromatic ring or CR 8 when part of a non aromatic ring;
  • X is N, NR 9 , O, S(O) n , , CO or CR 8 when part of an aromatic or non-aromatic ring or may in addition be CR 10 Rn when part of a non aromatic ring;
  • X and X are independently N or C;
  • Y ' is a 0 to 4 atom linker group each atom of which is independently selected from N, NR 9 , O, S(O) n . , CO and CR 8 when part of an aromatic or non-aromatic ring or may additionally be CRi 0 Rn when part of a non aromatic ring,
  • Y is a 2 to 6 atom linker group, each atom of Y being independently selected from N, NR 9 , O, S(O) n . , CO and CR 8 when part of an aromatic or non-aromatic ring or may additionally be CRioRn when part of a non aromatic ring;
  • R 8 , R 10 and R 11 are at each occurrence independently selected from: H; (C- ⁇ 4)alkylthio; halo; (C-
  • R 9 is at each occurrence independently hydrogen; trifluoromethyl; (C-j_4)alkyl unsubstituted or substituted by hydroxy, carboxy, (Ci _4)alkoxy, (C-
  • this invention describes a compound according to formula (I) wherein Z 1 and Z 4 are N; and Z 3 is CR 1a .
  • this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N. In some embodiments, this invention describes a compound according to formula (I) wherein Z 1 and Z 3 are CR 1a ; and Z 4 is N.
  • this invention describes a compound according to formula (I) wherein R is at each occurrence independently hydrogen; halogen; or cyano.
  • this invention describes a compound of formula (I) wherein Z 1 and Z 4 are N; Z 3 is CR 1a ; R 1a of Z 2 , Z 3 , and Z 5 are each hydrogen; R 1a of Z 6 is fluorine or cyano; and R 1 is OCH 3 .
  • this invention desacribes a compound of formula (I) wherein A is CH 2 ; and n of (CH 2 ) n is 1.
  • this invention describes a compound of formula (I) wherein n' is 0.
  • this invention describes a compound of formula (I) wherein n 1 is 1.
  • this invention describes a compound of formula (I) wherein R 1d is hydrogen and U is CH 2 . In certain aspects, this invention describes a compound of formula (I) wherein
  • this invention describes a compound of formula (I) wherein R 7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4H- Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3- c]pyridin-5-yl; 7-Chloro-4H-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]- pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-
  • this invention describes a compound of formula (I) wherein R 7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-t»][1 ,4]oxazin-3-oxo- 6-yl; or 7-Chloro-4/-/-pyrido[3,2-b]oxazin-3-oxo-6-yl.
  • this invention describes a compound of formula (I) wherein Z 1 and Z 3 are CR 1a ; Z 4 is N; R 1a of Z 2 , Z 3 , and Z 5 are each hydrogen; R 1a of Z 6 is fluorine or cyano; R 1 is OCH 3 ; A is CH 2 ; n of (CH 2 ) n is 1 ; and n' is 0.
  • this invention describes a compound of formula (I) wherein Zi and Z 3 are CR 1a ; Z 4 is N; R 1a of Z 2 , Z 3 , and Z 5 are each hydrogen; R 1a of Z 6 is fluorine or cyano; R 1 is OCH 3 ; A is CH 2 ; n of (CH 2 ) n is 1 ; and n 1 is 1.
  • this invention describes a compound of formula (I) wherein Z 1 and Z 3 are CR 1a ; Z 4 is N; R 1a of Z 2 , Z 3 , and Z 5 are each hydrogen; R 1a of Z 6 is fluorine or cyano; R 1 is OCH 3 ; A is CH 2 ; n of (CH 2 ) n is 1 ; and n' is 1 ; R 4 , R 5 and R 6 are independently hydrogen; halogen; (d.
  • R 6 alkyl; or hydroxy;
  • R 1d is hydrogen;
  • R 7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; or 7- Chloro-4H-pyrido[3,2-£>]oxazin-3-oxo-6-yl.
  • this invention describes a compound of formula (I) wherein the compound is 6- ⁇ [(3- ⁇ 2-[6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl ⁇ -3- azabicyclo[3.1.0]hex-6-yl)amino]methyl ⁇ -2/-/-pyrido[3,2-b][1 ,4]thiazin-3(4H)-one; 6- ⁇ [((3- ⁇ 2- [S-fluoro- ⁇ methyloxyJ-i . ⁇ -naphthyridin ⁇ -yllethylJ-S-azabicyclofS.I .Olhex- ⁇ - yl)amino]methyl ⁇ -2H-pyrido[3,2-fc>][1 ,4]thiazin-3(4H)-one; 6- ⁇ [(3- ⁇ 2-[3-fluoro-6-(methyloxy)- I .S-naphthyridin ⁇ -y
  • this invention describes a process for the preparation of intermediates of formula (IV) useful in the preparation of compounds of formula (I), which process comprises:
  • Z 1 , Z 2 , Z 3 , Z 4 , Z 5 , Z 6 , n, n 1 , W 1 , W 2 , W 3 , R 1 , R 2 , R 3 , R 6 , and R 1d are as defined in claim 1 ;
  • A is CR 2 R 3 ;
  • L is a leaving group
  • this invention describes a process for the preparation of a compound of claim 1 , which process comprises:
  • step (c) reacting the product of step (b) with a compound of formula (V) to give a compound of formula (I);
  • Z 1 , Z 2 , Z 3 , Z 4 , Z 5 , Z 6 , n, n', W 1 , W 2 , W 3 , R 1 , R 2 , R 3 , R 6 , R ? , U and R 1d are as defined in claim 1 ;
  • A is CR 2 R 3 ;
  • L and L 1 are leaving groups
  • P is hydrogen or an amine protecting group.
  • this invention describes a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of formula I or any one of the embodiments described herein, and a pharmaceutically acceptable carrier.
  • this invention describes a method of treating bacterial infections which comprises administering to a mammal in need thereof an effective amount of a compound of formula I or any of its embodiments described herein.
  • this invention describes compounds of formula I wherein the (a) and (b) rings of R 11 are both aromatic as demonstrated by the following non-limiting examples: 1 H-pyrrolo[2,3-b]-pyridin-2-yl, 1 H-pyrrolo[3,2-b]-pyridin-2-yl, 3H-imidazo[4,5-b]- pyrid-2-yl, 3H-quinazolin-4-one-2-yl, benzimidazol-2-yl, benzo[1 ,2,3]-thiadiazol-5-yl, benzo[1 ,2,5]-oxadiazol-5-yl, benzofur-2-yl, benzothiazol-2-yl, benzo[b]thiophen-2-yl, benzoxazol-2-yl, chromen-4-one-3-yl, i ⁇ midazo[1 ,2-a]pyridin-2-yl, imidazo-[1 ,2-a]-pyrimidin- 2-yl
  • Rn is defined by a non-aromatic (a) ring and aromatic (b) ring as illustrated by the following non-limiting examples:_(2S)-2,3-dihydro-1 H-indol-2- yl, (2S)-2,3-dihydro-benzo[1 ,4]dioxine-2-yl, 3-(R,S)-3,4-dihydro-2H-benzo[1 ,4]thiazin-3-yl, 3-(R)-2,3-dihydro-[1 ,4]dioxino[2,3-b]pyridin-3-yl, 3-(S)-2,3-dihydro-[1 ,4]dioxino[2,3- b]pyridin-3-yl, 2,3-dihydro-benzo[1 ,4]dioxan-2-yl, 3-substituted-3H-quinazolin-4-one-2-yl, 2,
  • R 11 is defined by an aromatic (a) ring and a non aromatic (b) ring as illustrated by the following non-limiting examples: 1 ,1 ,3-trioxo-1 ,2,3,4-tetrahydro-1 ⁇ -benzo[1 ,4] thiazin-6-yl, benzo[1 ,3]dioxol-5-yl, 2,3-dihydro-benzo[1 ,4]dioxin-6-yl, 2-oxo- 2,3-dihydro-benzooxazol-6-yl, 4H-benzo[1 ,4]oxazin-3-one-6-yl (3-oxo-3,4-dihydro-2H- benzo[1 ,4]oxazin-6-yl), 4H-benzo[1 ,4]thiazin-3-one-6-yl (3-oxo-3,4-dihydro-2H- benzo[1 ,4]thiazin-6-yl (3-
  • alkyl when used alone or when forming part of other groups (such as the 'alkoxy' group) includes substituted or unsubstituted, straight or branched chain alkyl groups containing the specified range of carbon atoms.
  • (Ci. 6 )alkyl include methyl, ethyl, propyl, butyl, iso-propyl, sec-butyl, tert-butyl, iso-pentyl, and the like.
  • alkenyl means a substituted or unsubstituted alkyl group of the specified range of carbon atoms, wherein one carbon-carbon single bond is replaced by a carbon-carbon double bond.
  • (C 26 )alkenyl include ethylene, 1- propene, 2-propene, 1-butene, 2-butene, and isobutene, and the like. Both cis and trans isomers are included.
  • cycloalkyl refers to subsituted or unsubstituted carbocyclic system of the specifed range of carbon atoms, which may contain up to two unsaturated carbon- carbon bonds.
  • (C 3 7 )cycloalkyl include cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, and cycloheptyl.
  • alkoxy refers to an O-alkyl radical where the alkyl group contains the specified range of carbon atoms and is as defined herein.
  • the alkyl group contains 13 or less carbons; in some embodiments 10 or less carbon atoms; in some embodiments 6 or less carbon atoms; and is as otherwise defined.
  • Aryl is as defined herein.
  • alkylsulphonyl refers to a SO 2 alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
  • alkylthio refers to a Salkyl wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
  • aminosulphonyl refers to a SO 2 N radical wherein the nitrogen is substituted as specified.
  • aminocarbonyl refers to a carboxamide radical wherein the nitrogen of the amide is substituted as defined.
  • heterocyclylthio refers to a S-heterocyclyl radical wherein the heterocyclyl moiety is as defined herein.
  • heterocyclyloxy refers to an O-heterocyclyl radical wherein heterocyclyl is as defined herein.
  • arylthio refers to an S-aryl radical wherein aryl is as defined herein.
  • aryloxy refers to an O-aryl radical wherein aryl is as defined herein.
  • acylthio refers to a S-acyl radical wherein acyl is as defined herein.
  • acyloxy refers to an O-acyl radical wherein acyl is as defined herein.
  • alkoxycarbonyl refers to a CO 2 alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
  • alkenyloxycarbonyl refers to a CO 2 alkyl radical wherein the alkenyl group contains the specified range of carbon atoms and is as defined herein.
  • alkylsulphonyloxy refers to an O-SO 2 alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
  • arylsulphonyl refers to a SO 2 aryl radical wherein aryl is as herein defined.
  • arylsulphoxide refers to a SOaryl radical wherein aryl is as defined herein.
  • suitable substituents for any alkyl, alkoxy, alkenyl, and cycloalkyl groups includes up to three substituents selected from the group consisting of hydroxy, halogen, nitro, cyano, carboxy, amino, amidino, sulphonamido, unsubstituted (Ci _3)alkoxy, trifluromethyl, and acyloxy.
  • Halo or halogen includes fluoro, chloro, bromo and iodo.
  • haloalkyl refers to an alkyl radical containing the specified range of carbon atoms and is as otherwise defined herein, which is further substituted with 1 -3 halogen atoms.
  • haloalkoxy refers to an alkoxy radical of the specified range and as defined herein, which is further substituted with 1-3 halogen atoms.
  • hydroxyalkyl refers to an alkyl group as defined herein, further substituted with a hydroxy group.
  • heterocyclic or “heterocyclyl” as used herein includes optionally substituted aromatic and non-aromatic, single and fused, mono- or bicyclic rings suitably containing up to four hetero-atoms in each ring selected from oxygen, nitrogen and sulphur, which rings may be unsubstituted or C-substituted by, for example, up to three groups selected from (C 1 4 )alkylthio; halo; (C 1 4 )haloalkoxy; (C 1 4 )haloalkyl; (C 1 4 )alkyl; (C 2 4 )alkenyl; hydroxy; hydroxy, (C 1 4 )alkyl; (C-j. ⁇ thioalkyl; (C 1 4 )alkoxy; nitro; cyano, carboxy; (C ⁇ alkylsulphonyl; (C 24 )alkenylsulphonyl; or aminosulphonyl wherein the amino group
  • Each heterocyclic ring suitably has from 3 to 7, preferably 5 or 6, ring atoms.
  • a fused heterocyclic ring system may include carbocyclic rings and need include only one heterocyclic ring.
  • heterocyclylalkyl refers to a (d. 6 )alkyl radical which bears as a substituent a heterocyclyl group, wherein heterocyclyl and alkyl are as herein defined.
  • the heterocyclyl group maybe joined to a primary, secondary or tertiary carbon of the (C 1 .
  • aryl includes optionally substituted phenyl and naphthyl.
  • Aryl groups may be optionally substituted with up to five, preferably up to three, groups selected from (C ⁇ alkylthio; halo; (C 1 4 )haloalkoxy; (C 1 Jhaloalkyl; (C 1 4 )alkyl; (C 2
  • aralkyl refers to a (Ci_ 6 )alkyl radical which bears as a substituent an aryl group, wherein aryl and alkyl are as herein defined.
  • the aryl group maybe joined to a primary, secondary or tertiary carbon of the ⁇ alkyl chain.
  • Solvates maybe produced from crystallization from a given solvent or mixture of solvents, inorganic or organic. Solvates may also produced upon contact or exposure to solvent vapors, such as water. This invention includes within its scope stoichiometric and non-stoichiometric solvates including hydrates.
  • phrases such as "a compound of Formula I or a pharmaceutically acceptable salt, solvate or derivative thereof” are intended to encompass the compound of Formula I, a derivative of formula (I), a pharmaceutically acceptable salt of the compound of formula (I), a solvate of formula (I), or any pharmaceutically acceptable combination of these.
  • a compound of Formula I or a pharmaceutically acceptable salt or solvate thereof may include a pharmaceutically acceptable salt of a compound of formula (I) that is further present as a solvate.
  • the compounds of formula (I) are intended for use in pharmaceutical compositions it will readily be understood that they are each provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure and preferably at least 85%, especially at least 98% pure (% are on a weight for weight basis). Impure preparations of the compounds may be used for preparing the more pure forms used in the pharmaceutical compositions; these less pure preparations of the compounds should contain at least 1 %, more suitably at least 5% and preferably from 10 to 59% of a compound of the formula (I) or pharmaceutically acceptable derivative thereof.
  • salts of the above-mentioned compounds of formula (I) include the free base form or their acid addition or quaternary ammonium salts, for example their salts with mineral acids e.g. hydrochloric, hydrobromic, sulphuric, nitric or phosphoric acids, or organic acids, e.g. acetic, fumaric, succinic, maleic, citric, benzoic, p- toluenesulphonic, methanesulphonic, naphthalenesulphonic acid or tartaric acids.
  • Compounds of formula (I) may also be prepared as the N-oxide.
  • Compounds of formula (I) having a free carboxy group may also be prepared as an in vivo hydrolysable ester.
  • the invention extends to all such derivatives.
  • One of skill in the art will recognize that where compounds of the invention contain multiple basic sites, a compound of the invention maybe present as a salt complexed with more than one equivalent of a corresponding acid or mixture of acids.
  • Pharmaceutically acceptable derivatives refers to compounds of formula (I) that have been covalently modifed with a group that undergoes at least some in vivo cleavage to a compound of formula (I).
  • Suitable pharmaceutically acceptable in vivo hydrolysable ester- forming groups include those forming esters which break down readily in the human body to leave the parent acid or its salt.
  • Suitable groups of this type include those of part formulae (i), (ii), (iii), (iv) and (v):
  • R is hydrogen, (C 1 6 ) alkyl, (C 3 7 ) cycloalkyl, methyl, or phenyl
  • R is (C 1-6 ) alkyl, (C 1 6 )alkoxy, phenyl, benzyl, (C 3 7 )cycloalkyl, (C 3 7 )cycloalkyloxy, (C 1 6 )alkyl(C 37 ) cycloalkyl, 1-3PnJnO(C 1 6 )alkyl, or a b
  • R and R together form a 1 ,2-phenylene group optionally substituted by one or two methoxy groups;
  • R represents (C 1 6 )alkylene d e optionally substituted with a methyl or ethyl group and R and R independently represent f g
  • (C 1-6 ) alkyl represents (C 1 6 ) alkyl; R represents (C 1 6 ) alkyl; R represents hydrogen or phenyl optionally substituted by up to three groups selected from halogen, (C 1 6 ) alkyl, or (C 1 6 ) alkoxy; Q is oxygen or NH; R is hydrogen or (C 1-6 ) a 'M; R ' s hydrogen, (C 1 6 ) alkyl optionally substituted by halogen, (C 2 6 ) alkenyl, (C 1 6 )alkoxycarbonyl, aryl or heteroaryl; or R and R' together form (C 1 6 ) alkylene; R J represents hydrogen, (C 1 6 ) alkyl or (C 1 6 )alkoxycarbonyl; and R represents (C 1 8 )alkyl, (C 1 8 )alkoxy, (C 1 ⁇ aIkOXy(C 1 6 )alkoxy or aryl.
  • suitable in vivo hydrolysable ester groups include, for example, 8CyIoXy(C 1 6 )alkyl groups such as acetoxymethyl, pivaloyloxymethyl, acetoxyethyl, pivaloyloxyethyl, 1 -(cyclohexylcarbonyloxy)prop-1-yl, and
  • R is hydrogen, C 1 6 alkyl or phenyl.
  • R is preferably hydrogen.
  • Compounds of formula (I) may also be prepared as the corresponding N-oxides.
  • Certain of the compounds of formula (I) may exist in the form of optical isomers, e.g. diastereoisomers and mixtures of isomers in all ratios, e.g. racemic mixtures.
  • the invention includes all such form, including pure isomeric forms.
  • the different isomeric forms may be separated or resolved one from the other by conventional methods, or any given isomer may be obtained by conventional synthetic methods or by stereospecific or asymmetric syntheses.
  • reaction parmeters such as reaction time, temperature, energy source, pressure, light, pressure, solvent or solvents used, co-reagents, catalysts, and the like.
  • Protective groups wherever found herein maybe designated by their specific formula or alternatively, maybe referred to generically by P or P n (wherein n is an integer). It is to be appreciated that where generic descriptors are used, that such descriptors are at each occurrence independent from each other. Thus, a compound with more than one of the same generic descriptors (e.g. P) does not indicate that each P is the same protective group, they maybe the same or different, so long as the group is suitable to the chemistry being employed. Where protection or deprotection is generically referred to, one of ordinary skill in the art will understand this to mean that suitable conditions are employed that will allow for the removal of the protecting group to be removed while minimizing reaction at other positions of the molecule, unless otherwise indicated.
  • P generic descriptors
  • a carboxylic acid maybe reacted with a coupling reagent such as DCC, CDI, EDCI, isobutyl chloroformate, etc, and the corresponding reative intermediate thus formed is further reacted with the nucleophilic coupling partner.
  • the activation step maybe performed before the introduction of the nucleophilic coupling partner, or in some cases, even in the presence of the nucleophilic coupling partner (depending upon the identity of the particular activating agent, carboxylic acid and nuclephilic coupling partner used).
  • leaving groups generally refer to atoms or groups which can be eliminated, substituted or otherwise dissociate during the course of the reaction.
  • the antibacterial compounds according to the invention may be formulated for administration in any convenient way for use in human or veterinary medicine, by analogy with other antibacterials.
  • the pharmaceutical compositions of the invention include those in a form adapted for oral, topical or parenteral use and may be used for the treatment of bacterial infection in mammals including humans.
  • compositions may be formulated for administration by any route.
  • the compositions may be in the form of tablets, capsules, powders, granules, lozenges, creams or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
  • the topical formulations of the present invention may be presented as, for instance, ointments, creams or lotions, eye ointments and eye or ear drops, impregnated dressings and aerosols, and may contain appropriate conventional additives such as preservatives, solvents to assist drug penetration and emollients in ointments and creams.
  • the formulations may also contain compatible conventional carriers, such as cream or ointment bases and ethanol or oleyl alcohol for lotions. Such carriers may be present as from about 1% up to about 98% of the formulation. More usually they will form up to about 80% of the formulation.
  • Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinylpyrrolidone; fillers, for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricants, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants, for example potato starch; or acceptable wetting agents such as sodium lauryl sulphate.
  • the tablets may be coated according to methods well known in normal pharmaceutical practice.
  • Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use.
  • Such liquid preparations may contain conventional additives, such as suspending agents, for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and, if desired, conventional flavouring or colouring agents.
  • Suppositories will contain conventional suppository bases, e.g. cocoa-butter or other glyceride.
  • fluid unit dosage forms are prepared utilizing the compound and a sterile vehicle, water being preferred.
  • the compound depending on the vehicle and concentration used, can be either suspended or dissolved in the vehicle.
  • the compound can be dissolved in water for injection and filter sterilised before filling into a suitable vial or ampoule and sealing.
  • agents such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle.
  • the composition can be frozen after filling into the vial and the water removed under vacuum.
  • the dry lyophilized powder is then sealed in the vial and an accompanying vial of water for injection may be supplied to reconstitute the liquid prior to use.
  • Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilization cannot be accomplished by filtration.
  • the compound can be sterilised by exposure to ethylene oxide before suspending in the sterile vehicle.
  • a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the compound.
  • compositions may contain from 0.1% by weight, preferably from 10-60% by weight, of the active material, depending on the method of administration. Where the compositions comprise dosage units, each unit will preferably contain from 50-500 mg of the active ingredient.
  • the dosage as employed for adult human treatment will preferably range from 100 to 3000 mg per day, for instance 1500 mg per day depending on the route and frequency of administration. Such a dosage corresponds to 1.5 to 50 mg/kg per day. Suitably the dosage is from 5 to 20 mg/kg per day.
  • the compound of formula (I) may be the sole therapeutic agent in the compositions of the invention or a combination with other antibacterials. If the other antibacterial is a ⁇ -lactam then a ⁇ -lactamase inhibitor may also be employed.
  • the compounds of this invention may also be used in the manufacture of medicaments useful in treating bacterial infections in humans or other mammals.
  • Reagents and conditions (a) TFA, CH2CI2, RT; (b) 8-ethenyl-2-(methyloxy)-1 ,5- naphthyridine, DMF, 100 0 C; (c) Pd(OH) 2 , H 2 (1atm), EtOH, RT; (d) 3-oxo-3,4-dihydro- 2H-pyrido[1 ,4]thiazine-6-carboxaldehyde, CH 2 CI 2 , EtOH; then NaBH 4 , EtOH.
  • an added base such as triethylamine (Et3N), diisopropylethylamine ((J-Pr) 2 NEt), or K 2 C ⁇ 3, may be used.
  • Et3N triethylamine
  • (J-Pr) 2 NEt) diisopropylethylamine
  • K 2 C ⁇ 3 K 2 C ⁇ 3
  • Reagents and conditions (a) BnCI 1 Et 2 O, the NaBH 4 , EtOH; (b) CH 2 ICI, Zn/Cu, Et 2 O; (c) Pd/C, H 2 , EtOH; (d) 8-ethenyl-2-(methyloxy)-1 ,5-naphthyridine, DMF, 100 0 C; (e) TFA, DCM, RT; (f) 3-oxo-3,4-dihydro-2/-/-pyrido[1 ,4]thiazine-6-carboxaldehyde, CH 2 CI 2 , EtOH; then NaBH 4 , EtOH.
  • Mass spectra were obtained using electrospray (ES) ionization techniques. Elemental analyses were performed by Quantitative Technologies Inc., Whitehouse, NJ. Melting points were obtained on a Thomas-Hoover melting point apparatus and are uncorrected. All temperatures are reported in degrees Celsius.
  • E. Merck Silica Gel 60 F-254 thin layer plates were used for thin layer chromatography. Flash chromatography was carried out on E. Merck Kieselgel 60 (230-400 mesh) silica gel. Analytical HPLC was performed on Beckman chromatography systems. Preparative HPLC was performed using Gilson chromatography systems. ODS refers to an octadecylsilyl derivatized silica gel chromatographic support.
  • YMC ODS-AQ® is an ODS chromatographic support and is a registered trademark of YMC Co. Ltd., Kyoto, Japan.
  • PRP-1(S> is a polymeric (styrene-divinylbenzene) chromatographic support, and is a registered trademark of Hamilton Co., Reno, Nevada.
  • Celite® is a filter aid composed of acid-washed diatomaceous silica, and is a registered trademark of Manville Corp., Denver, Colorado.
  • 6-Bromo-4/-/-pyrido[3,2-b][1 ,4]oxazin-3-one (6.0 g, 26.3 mmole) and trans-2- phenylvinylboronic acid (3.9 g, 26.3 mmole) were dissolved in 1 ,4-dioxane (150 ml.) and the solution was degassed with argon.
  • (Ph3P)4Pd 230 mg, 0.2 mmole was added, followed by a solution of potassium carbonate (6.9 g, 50 mmole) in H2O (20 ml_). The reaction was heated at reflux under argon overnight, then was cooled to room temperature and diluted with EtOAc (200 ml_).
  • This acid was prepared from 3-Oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazine-6- carboxaldehyde (890 mg) by oxidation with Oxone (potassium peroxymonosulphate) (3.1 g) in a DMF solution (50 ml_). After 1.5 hours at room temperature, dilution with water (50 ml_) filtration and drying in vacuo afforded the acid as a white solid (750 mg, 77%).
  • 6-Bromo-4H-pyrido[3,2-b][1 ,4]oxazin-3-one (2Og, 87.7 mmole) was dissolved in DMF (175 ml.) and cooled in an ice bath. Chlorine gas was then slowly bubbled in for 45 minutes, and then the saturated solution was stirred in the ice bath for 2 hours. The mixture was purged with nitrogen and slowly added with stirring to 1 L of ice water which contained 100g of Na 2 SO 3 , making sure to keep the temperature ⁇ 15 0 C. After stirring 30 minutes the product was filtered, washed thoroughly with water and dried to afford (22.5g, 98%) of a white solid.
  • NBn Zn/Cu (1.1 g, 1.1 wt.%) [prepared according to the procedure of Shank and
  • the minimum inhibitory concentration (MIC) was determined as the lowest concentration of compound that inhibited visible growth. A mirror reader was used to assist in determining the MIC endpoint.

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Abstract

Naphthalene, quinoline, quinoxaline and naphthyridine derivatives useful in the treatment of bacterial infections in mammals, particularly humans, are disclosed herein.

Description

TITLE ANTIBACTERIAL AGENTS
FIELD OF THE INVENTION
This invention relates to novel compounds, compositions containing them, their use as antibacterials, and processes for their preparation.
BACKGROUND OF THE INVENTION The emergence of pathogens resistant to known antibiotic therapy is becoming a serious global healthcare problem (Chu, et al., (1996) J. Med. Chem., 39: 3853-3874). Thus, there is a need to discover new broad spectrum antibiotics useful in combating multidrug- resistant organisms. Importantly, it has now been discovered that certain compounds have antibacterial activity, and, therefore, may be useful for the treatment of bacterial infections in mammals, particularly in humans.
SUMMARY OF THE INVENTION
This invention comprises compounds of the formula (I), as described hereinafter, which are useful in the treatment of bacterial infections. This invention is also a pharmaceutical composition comprising a compound according to formula (I) and a pharmaceutically acceptable carrier. This invention is also processes for the preparation of compounds of formula (I), as well as processes for the preparation of intermediates ' useful in the synthesis of compounds of formula (I). This invention is also a method of treating bacterial infections in mammals, particularly in humans.
DETAILED DESCRIPTION OF THE INVENTION
This invention provides a compound of formula (I) or a pharmaceutically acceptable salt, solvate or derivative thereof:
PU60958
Figure imgf000003_0001
(I) wherein:
Z1, Z3, and Z4 are independently N or CR ;
Z2, Z5, and Z6 are each CR1a;
R1 and R1a are independently at each occurrence hydrogen; cyano; halogen; hydroxy; (C-| _6)alkoxy unsubstituted or substituted by (C-| _6)alkoxy, hydroxy, amino, piperidyl, guanidino or amidino any of which is unsubstitued or N-substituted by one or two
(Ci _ρ)alkyl, acyl, (C-|_6)alkylsulphonyl, CONH2, hydroxy, (C-|_6)alkylthio, heterocyclylthio, heterocyclyloxy, arylthio, aryloxy, acylthio, acyloxy or (C-j .ρJalkylsulphonyloxy; (C-|_5)alkyl;
(Ci _6)alkylthio; trifluoromethyl; trifluoromethoxy; nitro; azido; acyl; acyloxy; acylthio; (C-\ . @)alkylsulphonyl; (C-|.6)alkylsulphoxide; arylsulphonyl; arylsulphoxide; or an amino, piperidyl, guanidino or amidino group unsubstituted or N-substituted by one or two (C-) .
6)alkyl, acyl or (C-| _6)alkylsulphonyl groups; or R1 and R1a of Z2 together form ethylenedioxy;
A is NR1b(C=O) or CR2R3;
W1, W2, and W3 are each CR4R5;
R1b and R1d are independently at each occurrence hydrogen, trifluoromethyl; (C1. 6)alkyl; (C2.6)alkenyl; (C^alkoxycarbonyl; (d^alkylcarbonyl; (C2.6)alkenyloxycarbonyl; aryl; aralkyl; (C3.a)cycloalkyl; heterocyclyl; or heterocyclylalkyl; R2. R3, R4, Rs, and R6 are independently hydrogen; thiol; (d.6)alkylthio; halogen; trifluoromethyl; azido; (d.6)alkyl; (C2.6)alkenyl; (d.6)alkoxycarbonyl; (Ci_6)alkylcarbonyl; (C2-6)alkenylcarbonyl; (C2-6)alkenyloxycarbonyl; aralkyl; aryl; heterocyclyl; heterocyclylalkyl; hydroxy; amino; NR1cR1c; (d.6)alkylsulphonyl; (C2.6)alkenylsulphonyl; or (Ci.6)aminosulphonyl wherein the amino group is optionally and independently substituted by hydrogen, (d-6)aikyl, (C2.6)alkenyl or aralkyl;
R1c and R1c' are independently at each occurrence hydrogen; (d.6)alkyl; aralkyl; aryl; heterocyclyl; heterocyclylalkyl; or together with the nitrogen that they are attached torn an aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring (wherein said aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring are optionally substiuted with from 1 to 3 substituents selected from halogen, hydroxy; cyano; nitro; (C1. 6)alkyl; and aryl);
n' is O or 1 ;
n and n" are independently and at each occurrence 0, 1 , or 2;
U is CH2; C(=O); or SO2;
R7 is a substituted or unsubstituted bicyclic carbocyclic or heterocyclic ring system (A):
Figure imgf000004_0001
containing up to four heteroatoms in each ring in which at least one of rings (a) and (b) is aromatic;
X is C or N when part of an aromatic ring or CR8 when part of a non aromatic ring;
2 X is N, NR9, O, S(O)n, , CO or CR8 when part of an aromatic or non-aromatic ring or may in addition be CR10Rn when part of a non aromatic ring;
3 5
X and X are independently N or C; Y' is a 0 to 4 atom linker group each atom of which is independently selected from N, NR9, O, S(O)n. , CO and CR8 when part of an aromatic or non-aromatic ring or may additionally be CRi0Rn when part of a non aromatic ring,
2 2
Y is a 2 to 6 atom linker group, each atom of Y being independently selected from N, NR9, O, S(O)n. , CO and CR8 when part of an aromatic or non-aromatic ring or may additionally be CRioRn when part of a non aromatic ring;
R8, R10 and R11 are at each occurrence independently selected from: H; (C-μ 4)alkylthio; halo; (C-| _4)alkyl; (C2-4)alkenyl; hydroxy; hydroxy(C-| _4)alkyl; mercapto(C-|_ 4)alkyl; (C-|_4)alkoxy; trifluoromethoxy; nitro; cyano; carboxy; amino or aminocarbonyl unsubstituted or substituted by (C-\ -4)alkyl;
R9 is at each occurrence independently hydrogen; trifluoromethyl; (C-j_4)alkyl unsubstituted or substituted by hydroxy, carboxy, (Ci _4)alkoxy, (C-| _g)alkylthio, halo or trifluoromethyl; (C2-4)alkenyl; or aminocarbonyl wherein the amino group is optionally substituted with (C-|_4)alkyl; or a pharmaceutically acceptable salt or solvate thereof.
In some embodiments, this invention describes a compound according to formula (I) wherein Z1 and Z4 are N; and Z3 is CR1a.
In certain embodiments, this invention describes a compound according to formula (I) wherein Z1 and Z3 are CR1a; and Z4 is N. In some embodiments, this invention describes a compound according to formula
(I) wherein R1 is OCH3.
In certain embodiments, this invention describes a compound according to formula (I) wherein R is at each occurrence independently hydrogen; halogen; or cyano.
In some embodiments, this invention describes a compound of formula (I) wherein Z1 and Z4 are N; Z3 is CR1a; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; and R1 is OCH3.
In certain aspects, this invention desacribes a compound of formula (I) wherein A is CH2; and n of (CH2)n is 1.
In some embodiments, this invention describes a compound of formula (I) wherein n' is 0.
In certain embodiments, this invention describes a compound of formula (I) wherein n1 is 1.
In some embodiments, this invention describes a compound of formula (I) wherein R1d is hydrogen and U is CH2. In certain aspects, this invention describes a compound of formula (I) wherein
R1d is hydrogen and U is C(=O). In some embodiments, this invention describes a compound of formula (I) wherein R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4H- Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3- c]pyridin-5-yl; 7-Chloro-4H-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]- pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4H-pyrido[3,2- £>][1 ,4]thiazin-3-oxo-6-yl; 3-Oxa-1-thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro- benzo[1 ,4]dioxin-6-yl; 6-Fluoro-2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7- Fluoro-4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3- dihydro-benzo[1 ,4]dioxin-6-yl. In certain embodiments, this invention describes a compound of formula (I) wherein R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-t»][1 ,4]oxazin-3-oxo- 6-yl; or 7-Chloro-4/-/-pyrido[3,2-b]oxazin-3-oxo-6-yl.
In some embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; and n' is 0.
In certain embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; n1 is 0; R4, R5 and R6 are independently hydrogen; halogen; (d.6)alkyl; or hydroxy; R1d is hydrogen; and U is CH2 or (C=O).
In certain embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; n' is 0; R4, R5 and R6 are independently hydrogen; halogen; (C^alkyl; or hydroxy; R1d is hydrogen; U is CH2 or (C=O); and R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6- yl; 4/-/-Pyrido[3,2-fc>][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro- furo[2,3-c]pyridin-5-yl; 7-Chloro-4/-/-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro- [1 ,4]dioxino[2,3-c]-pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4H- pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 3-Oxa-1-thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro- benzo[1 ,4]dioxin-6-yl; 6-Fluoro-2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7- Fluoro-4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3- dihydro-benzo[1 ,4]dioxin-6-yl.
In certain embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; n1 is 0; R4, R5 and R6 are independently hydrogen; halogen; (C^alkyl; or hydroxy; R1d is hydrogen; U is CH2 or (C=O); and R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-b][1 ,4]oxazin-3- oxo-6-yl; or 7-Chloro-4/-/-pyrido[3,2-b]oxazin-3-oxo-6-yl.
In some embodiments, this invention describes a compound of formula (I) wherein Zi and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; and n1 is 1.
In certain embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; and n' is 1 ; R4, R5 and R6 are independently hydrogen; halogen; (Ci-e)alkyl; or hydroxy; R1d is hydrogen; and U is CH2 or (C=O).
In some embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; and n1 is 1 ; R4, R5 and R6 are independently hydrogen; halogen; (C1-6JaIKyI; or hydroxy; R1d is hydrogen; U is CH2 or (C=O); and R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4H-Pyrido[3,2- b][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3-c]pyridin-5- yl; 7-Chloro-4H-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]-pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4H-pyrido[3,2-b][1 ,4]thiazin-3-oxo-6- yl; 3-Oxa-1-thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl; 6-Fluoro- 2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7-Fluoro-4H-benzo[1 ,4]thiazin-3- oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl.
In some embodiments, this invention describes a compound of formula (I) wherein Z1 and Z3 are CR1a; Z4 is N; R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; R1 is OCH3; A is CH2; n of (CH2)n is 1 ; and n' is 1 ; R4, R5 and R6 are independently hydrogen; halogen; (d.6)alkyl; or hydroxy; R1d is hydrogen; U is CH2 or (C=O); and R7 is 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; or 7- Chloro-4H-pyrido[3,2-£>]oxazin-3-oxo-6-yl.
In certain embodiments, this invention describes a compound of formula (I) wherein the compound is 6-{[(3-{2-[6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hex-6-yl)amino]methyl}-2/-/-pyrido[3,2-b][1 ,4]thiazin-3(4H)-one; 6-{[((3-{2- [S-fluoro-θ^methyloxyJ-i .δ-naphthyridin^-yllethylJ-S-azabicyclofS.I .Olhex-β- yl)amino]methyl}-2H-pyrido[3,2-fc>][1 ,4]thiazin-3(4H)-one; 6-{[(3-{2-[3-fluoro-6-(methyloxy)- I .S-naphthyridin^-yljethylJ-S-azabicyclotS.I .Olhex-e-yOaminolmethyl^H-pyrido^^- t»][1 ,4]oxazin-3(4H)-one; 7-chloro-6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4- yl]ethyl}-3-azabicyclo[3.1.0]hex-6-yl)amino]methyl}-2H-pyrido[3,2-/b][1 ,4]oxazin-3(4H)-one; Λ/-(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3-azabicyclo[3.1.0]hex-6-yl)-3- oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazine-6-carboxamide; 6-{[(3-{2-[6-(methyloxy)-1 ,5- naphthyridin-4-yl]ethyl}-3-azabicyclo[4.1.0]hept-6-yl)amino]methyl}-2H-pyrido[3,2- £>][1 ,4]thiazin-3(4H)-one; or 6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[4.1.0]hept-6-yl)amino]methyl}-2H-pyrido[3,2-b][1 ,4]thiazin-3(4H)-one; or a pharmaceutically acceptable salt or solvate thereof.
In certain aspects, this invention describes a process for the preparation of intermediates of formula (IV) useful in the preparation of compounds of formula (I), which process comprises:
(a) reacting a compound of formula (II) with a compound of formula (III) to give a useful intermediate having formula (IV):
Figure imgf000008_0001
(IV) wherein:
Z1, Z2, Z3, Z4, Z5, Z6, n, n1, W1, W2, W3, R1, R2, R3, R6, and R1d are as defined in claim 1 ; and
X1 is CH=CH2 or A-(CH2Jn-L;
A is CR2R3;
L is a leaving group; and
P is hydrogen or an amine protecting group. In some embodiments, this invention describes a process for the preparation of a compound of claim 1 , which process comprises:
(a) reacting a compound of formula (II) with a compound of formula (III) to give a compound of formula (IV);
(b) reacting the compound of formula (IV) with a compound of formula (V); (c) removing P (where P is not hydrogen) to give a compound of formula (I);
(d) optionally converting to a pharmaceutically acceptable salt or solvate, thereof; or
(a) reacting a compound of formula (II) with a compound of formula (III) to give a compound of formula (IV);
(b) removing P (where P is not hydrogen); and
(c) reacting the product of step (b) with a compound of formula (V) to give a compound of formula (I);
(d) optionally converting to a pharmaceutically acceptable salt or solvate, thereof;
Figure imgf000009_0001
wherein:
Z1, Z2, Z3, Z4, Z5, Z6, n, n', W1, W2, W3, R1, R2, R3, R6, R?, U and R1d are as defined in claim 1 ;
X' is CH=CH2 or A-(CH2)n-L;
A is CR2R3;
L and L1 are leaving groups; and
P is hydrogen or an amine protecting group.
In certain embodiments, this invention describes a pharmaceutical composition comprising a compound of formula I or any one of the embodiments described herein, and a pharmaceutically acceptable carrier.
In some embodiments, this invention describes a method of treating bacterial infections which comprises administering to a mammal in need thereof an effective amount of a compound of formula I or any of its embodiments described herein.
In some embodiments, this invention describes compounds of formula I wherein the (a) and (b) rings of R11 are both aromatic as demonstrated by the following non-limiting examples: 1 H-pyrrolo[2,3-b]-pyridin-2-yl, 1 H-pyrrolo[3,2-b]-pyridin-2-yl, 3H-imidazo[4,5-b]- pyrid-2-yl, 3H-quinazolin-4-one-2-yl, benzimidazol-2-yl, benzo[1 ,2,3]-thiadiazol-5-yl, benzo[1 ,2,5]-oxadiazol-5-yl, benzofur-2-yl, benzothiazol-2-yl, benzo[b]thiophen-2-yl, benzoxazol-2-yl, chromen-4-one-3-yl, iιmidazo[1 ,2-a]pyridin-2-yl, imidazo-[1 ,2-a]-pyrimidin- 2-yl, indol-2-yl, indol-6-yl, isoquinoliπ-3-yl, [1 ,8]-naphthyridine-3-yl, oxazolo[4,5-b]-pyridin- 2-yl, quinolin-2-yl, quinolin-3-yl, quinoxalin-2-yl, indan-2-yl, naphthalen-2-yl, 1 ,3-dioxo- isoindol-2yl, benzimidazol-2-yl, benzothiophen-2-yl, 1 H-benzotriazol-5-yl, 1 H-indol-5-yl, 3H-benzooxazol-2-one-6-yl, 3H-benzooxazol-2-thione-6-yl, 3H-benzothiazol-2-one-5-yl, 3H-quinazolin-4-one-2-yl, 3H-quinazolin-4-one-6-yl, 4-oxo-4H-pyrido[1 ,2-a]pyrimidin-3-yl, benzo[1 ,2,3]thiadiazol-6-yl, benzo[1 ,2,5]thiadiazol-5-yl, benzo[1 ,4]oxazin-2-one-3-yl, benzothiazol-5-yl, benzothiazol-6-yl, cinnolin-3-yl, imidazo[1 ,2-a]pyridazin-2-yl, imidazo[1 ,2-b]pyridazin-2-yl, pyrazolo[1 ,5-a]pyrazin-2-yl, pyrazolo[1 ,5-a]pyridin-2-yl, pyrazolo[1 ,5-a]pyrimidin-6-yl, pyrazolo[5,1 -c][1 ,2,4]triazin-3-yl, pyrido[1 ,2-a]pyrimdin-4- one-2-yl, pyrido[1 ,2-a]pyrimidin-4-one-3-yl, quinazolin-2-yl, quinoxalin-6-yl, thiazolo[3,2- a]pyrimidin-5-one-7-yl, thiazolo[5,4-b]pyridin-2-yl, thieno[3,2-b]pyridin-6-yl, thiazolo[5,4- b]pyridin-6-yl, 4-oxo-4H-pyrido[1 ,2-a]pyrimidin-2-yl, 1 -oxo-1 ,2-dihydro-isoquinolin-3-yl, thiazolo[4,5-b]pyridin-5-yl, [1 ,2,3]thiadiazolo[5,4-b]pyridin-6-yl, 2H-isoquinolin-1-one-3-yl. In yet other embodiments, Rn is defined by a non-aromatic (a) ring and aromatic (b) ring as illustrated by the following non-limiting examples:_(2S)-2,3-dihydro-1 H-indol-2- yl, (2S)-2,3-dihydro-benzo[1 ,4]dioxine-2-yl, 3-(R,S)-3,4-dihydro-2H-benzo[1 ,4]thiazin-3-yl, 3-(R)-2,3-dihydro-[1 ,4]dioxino[2,3-b]pyridin-3-yl, 3-(S)-2,3-dihydro-[1 ,4]dioxino[2,3- b]pyridin-3-yl, 2,3-dihydro-benzo[1 ,4]dioxan-2-yl, 3-substituted-3H-quinazolin-4-one-2-yl, 2,3-dihydro-benzo[1 ,4]dioxan-2-yl, 1 -oxo-1 ,3,4,5-tetrahydrobenzo[c]azepin-2-yl. In still other embodiments, R11 is defined by an aromatic (a) ring and a non aromatic (b) ring as illustrated by the following non-limiting examples: 1 ,1 ,3-trioxo-1 ,2,3,4-tetrahydro-1 ^-benzo[1 ,4] thiazin-6-yl, benzo[1 ,3]dioxol-5-yl, 2,3-dihydro-benzo[1 ,4]dioxin-6-yl, 2-oxo- 2,3-dihydro-benzooxazol-6-yl, 4H-benzo[1 ,4]oxazin-3-one-6-yl (3-oxo-3,4-dihydro-2H- benzo[1 ,4]oxazin-6-yl), 4H-benzo[1 ,4]thiazin-3-one-6-yl (3-oxo-3,4-dihydro-2H- benzo[1 ,4]thiazin-6-yl), 4H-benzo[1 ,4]oxazin-3-one-7-yl, 4-oxo-2,3,4,5-tetrahydro- benzo[b][1 ,4]thiazepine-7-yl, 5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyrimidin-6-yl, benzo[1 ,3]dioxol-5-yl, 2-oxo-2,3-dihydro-1 H-pyrido[2,3-b][1 ,4]thiazin-7-yl, 2-oxo-2,3- dihydro-1 H-pyrido[3,4-b][1 ,4]thiazin-7-yl, 3-oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazin-6- yl, 2,3-dihydro-[1 ,4]dioxino[2,3-b]pyridin-6-yl, 2,3-dihydro-[1 ,4]dioxino[2,3-c]pyridin-7-yl, 2,3-dihydro-[1 ,4]dioxino[2,3-b]pyridin-7-yl, 6,7-dihydro-[1 ,4]dioxino[2,3-d]pyrimidin-2-yl, 3- oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]oxazin-6-yl, 2-oxo-2,3-dihydro-1 H-pyrido[3,4- b][1 ,4]oxazin-7-yl, 2-oxo-2,3-dihydro-1 H-pyrido[2,3-b][1 ,4]oxazin-7-yl, 6-oxo-6,7-dihydro- 5H-8-thia-1 ,2,5-triaza-naphthalen-3-yl, 3,4-dihydro-2H-benzo[1 ,4]oxazin-6-yl, 3- substituted-3H-benzooxazol-2-one-6-yl, 3-substituted-3H-benzooxazole-2-thione-6-yl, 3- substituted-3H-benzothiazol-2-one-6-yl, 2,3-dihydro-1 H-pyrido[2,3-b][1 ,4]thiazin-7-yl, 3,4- dihydro-2H-benzo[1 ,4]thiazin-6-yl, 3,4-dihydro-1 H-quinolin-2-one-7-yl, 3,4-dihydro-1 H- quinoxalin-2-one-7-yl, 6,7-dihydro-4H-pyrazolo[1 ,5-a]pyrimidin-5-one-2-yl, 5,6,7,8- tetrahydro-[1 ,8]naphthyridin-2-yl, 2-oxo-3,4-dihydro-1 H-[1 ,8]naphthyridin-6-yl, 3,4-dihydro- 2H-pyrido[3,2-b][1 ,4]thiazin-6-yl.
Unless otherwise defined, the term "alkyl" when used alone or when forming part of other groups (such as the 'alkoxy' group) includes substituted or unsubstituted, straight or branched chain alkyl groups containing the specified range of carbon atoms. For example, the term "(Ci.6)alkyl" include methyl, ethyl, propyl, butyl, iso-propyl, sec-butyl, tert-butyl, iso-pentyl, and the like.
The term "alkenyl" means a substituted or unsubstituted alkyl group of the specified range of carbon atoms, wherein one carbon-carbon single bond is replaced by a carbon-carbon double bond. For example, the term "(C26)alkenyl" include ethylene, 1- propene, 2-propene, 1-butene, 2-butene, and isobutene, and the like. Both cis and trans isomers are included.
The term "cycloalkyl" refers to subsituted or unsubstituted carbocyclic system of the specifed range of carbon atoms, which may contain up to two unsaturated carbon- carbon bonds. For example, the term "(C3 7)cycloalkyl" include cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, and cycloheptyl. The term "alkoxy" refers to an O-alkyl radical where the alkyl group contains the specified range of carbon atoms and is as defined herein.
The term "acyl" refers to a C(=O)alkyl or a C(=O)aryl radical. In some embodiments, the alkyl group contains 13 or less carbons; in some embodiments 10 or less carbon atoms; in some embodiments 6 or less carbon atoms; and is as otherwise defined. Aryl is as defined herein.
The term "alkylcarbonyl" refers to a (Ci.6)alkyl(C=O)(Ci.6)alkyl group wherein alkyl is as otherwise defined herein.
The term "alkylsulphonyl" refers to a SO2alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein. The term "alkylthio" refers to a Salkyl wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
The term "aminosulphonyl" refers to a SO2N radical wherein the nitrogen is substituted as specified.
The term "aminocarbonyl" refers to a carboxamide radical wherein the nitrogen of the amide is substituted as defined. The term "heterocyclylthio" refers to a S-heterocyclyl radical wherein the heterocyclyl moiety is as defined herein.
The term "heterocyclyloxy" refers to an O-heterocyclyl radical wherein heterocyclyl is as defined herein. The term "arylthio" refers to an S-aryl radical wherein aryl is as defined herein.
The term "aryloxy" refers to an O-aryl radical wherein aryl is as defined herein. The term "acylthio" refers to a S-acyl radical wherein acyl is as defined herein. The term "acyloxy" refers to an O-acyl radical wherein acyl is as defined herein. The term "alkoxycarbonyl" refers to a CO2alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein.
The term "alkenyloxycarbonyl" refers to a CO2alkyl radical wherein the alkenyl group contains the specified range of carbon atoms and is as defined herein.
The term "alkylsulphonyloxy" refers to an O-SO2alkyl radical wherein the alkyl group contains the specified range of carbon atoms and is as defined herein. The term "arylsulphonyl" refers to a SO2aryl radical wherein aryl is as herein defined.
The term "arylsulphoxide" refers to a SOaryl radical wherein aryl is as defined herein.
Unless otherwise defined, suitable substituents for any alkyl, alkoxy, alkenyl, and cycloalkyl groups includes up to three substituents selected from the group consisting of hydroxy, halogen, nitro, cyano, carboxy, amino, amidino, sulphonamido, unsubstituted (Ci _3)alkoxy, trifluromethyl, and acyloxy.
Halo or halogen includes fluoro, chloro, bromo and iodo. The term "haloalkyl" refers to an alkyl radical containing the specified range of carbon atoms and is as otherwise defined herein, which is further substituted with 1 -3 halogen atoms.
The term "haloalkoxy" refers to an alkoxy radical of the specified range and as defined herein, which is further substituted with 1-3 halogen atoms.
The term "hydroxyalkyl" refers to an alkyl group as defined herein, further substituted with a hydroxy group.
Unless otherwise defined, the term "heterocyclic" or "heterocyclyl" as used herein includes optionally substituted aromatic and non-aromatic, single and fused, mono- or bicyclic rings suitably containing up to four hetero-atoms in each ring selected from oxygen, nitrogen and sulphur, which rings may be unsubstituted or C-substituted by, for example, up to three groups selected from (C1 4)alkylthio; halo; (C1 4)haloalkoxy; (C1 4)haloalkyl; (C1 4)alkyl; (C2 4)alkenyl; hydroxy; hydroxy, (C1 4)alkyl; (C-j.^thioalkyl; (C1 4)alkoxy; nitro; cyano, carboxy; (C^alkylsulphonyl; (C24)alkenylsulphonyl; or aminosulphonyl wherein the amino group is optionally substituted by (C1jt)alkyl or (C2
4)alkenyl.
Each heterocyclic ring suitably has from 3 to 7, preferably 5 or 6, ring atoms. A fused heterocyclic ring system may include carbocyclic rings and need include only one heterocyclic ring.
Compounds within the invention containing a heterocyclyl group may occur in two or more tautometric forms depending on the nature of the heterocyclyl group; all such tautomeric forms are included within the scope of the invention. Where an amino group forms part of a single or fused non-aromatic heterocyclic ring as defined above suitable optional substituents in such substituted amino groups include hydrogen; trifluoromethyl; (C1 4)alkyl optionally substituted by hydroxy, (C1
4)alkoxy, (C1 Jalkylthio, halo or trifluoromethyl; and (C24)alkenyl.
The term "heterocyclylalkyl" refers to a (d.6)alkyl radical which bears as a substituent a heterocyclyl group, wherein heterocyclyl and alkyl are as herein defined.
The heterocyclyl group maybe joined to a primary, secondary or tertiary carbon of the (C1.
6)alkyl chain.
When used herein the term "aryl", includes optionally substituted phenyl and naphthyl. Aryl groups may be optionally substituted with up to five, preferably up to three, groups selected from (C^alkylthio; halo; (C1 4)haloalkoxy; (C1 Jhaloalkyl; (C1 4)alkyl; (C2
Jalkenyl; hydroxy; (C^hydroxyalkyl; (C1^J)alkylthio; (C1^aIkOXy; nitro; cyano; carboxy; amino or aminocarbonyl optionally substituted by (C1j})alkyl; (C^alkylsulphonyl; (C2
Jalkenylsulphonyl. The term "aralkyl" refers to a (Ci_6)alkyl radical which bears as a substituent an aryl group, wherein aryl and alkyl are as herein defined. The aryl group maybe joined to a primary, secondary or tertiary carbon of the ^^alkyl chain.
This invention also contemplates that some of its structural embodiments maybe present as a solvate. Solvates maybe produced from crystallization from a given solvent or mixture of solvents, inorganic or organic. Solvates may also produced upon contact or exposure to solvent vapors, such as water. This invention includes within its scope stoichiometric and non-stoichiometric solvates including hydrates.
Furthermore, it will be understood that phrases such as "a compound of Formula I or a pharmaceutically acceptable salt, solvate or derivative thereof" are intended to encompass the compound of Formula I, a derivative of formula (I), a pharmaceutically acceptable salt of the compound of formula (I), a solvate of formula (I), or any pharmaceutically acceptable combination of these. Thus by way of non-limiting example used here for illustrative purpose, "a compound of Formula I or a pharmaceutically acceptable salt or solvate thereof" may include a pharmaceutically acceptable salt of a compound of formula (I) that is further present as a solvate.
Since the compounds of formula (I) are intended for use in pharmaceutical compositions it will readily be understood that they are each provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure and preferably at least 85%, especially at least 98% pure (% are on a weight for weight basis). Impure preparations of the compounds may be used for preparing the more pure forms used in the pharmaceutical compositions; these less pure preparations of the compounds should contain at least 1 %, more suitably at least 5% and preferably from 10 to 59% of a compound of the formula (I) or pharmaceutically acceptable derivative thereof.
Pharmaceutically acceptable salts of the above-mentioned compounds of formula (I) include the free base form or their acid addition or quaternary ammonium salts, for example their salts with mineral acids e.g. hydrochloric, hydrobromic, sulphuric, nitric or phosphoric acids, or organic acids, e.g. acetic, fumaric, succinic, maleic, citric, benzoic, p- toluenesulphonic, methanesulphonic, naphthalenesulphonic acid or tartaric acids. Compounds of formula (I) may also be prepared as the N-oxide. Compounds of formula (I) having a free carboxy group may also be prepared as an in vivo hydrolysable ester. The invention extends to all such derivatives. One of skill in the art will recognize that where compounds of the invention contain multiple basic sites, a compound of the invention maybe present as a salt complexed with more than one equivalent of a corresponding acid or mixture of acids. Pharmaceutically acceptable derivatives refers to compounds of formula (I) that have been covalently modifed with a group that undergoes at least some in vivo cleavage to a compound of formula (I).
Examples of suitable pharmaceutically acceptable in vivo hydrolysable ester- forming groups include those forming esters which break down readily in the human body to leave the parent acid or its salt.
Suitable groups of this type include those of part formulae (i), (ii), (iii), (iv) and (v):
Figure imgf000015_0001
CH2- OR* (iii)
CHOCO
Figure imgf000015_0002
Figure imgf000015_0003
wherein R is hydrogen, (C1 6) alkyl, (C3 7) cycloalkyl, methyl, or phenyl, R is (C1-6) alkyl, (C1 6)alkoxy, phenyl, benzyl, (C3 7)cycloalkyl, (C3 7)cycloalkyloxy, (C1 6)alkyl(C37) cycloalkyl, 1-3PnJnO(C1 6)alkyl, or a b
1-(C1 6alkyl)amino(C1 6) alkyl; or R and R together form a 1 ,2-phenylene group optionally substituted by one or two methoxy groups; R represents (C1 6)alkylene d e optionally substituted with a methyl or ethyl group and R and R independently represent f g
(C1-6) alkyl; R represents (C1 6) alkyl; R represents hydrogen or phenyl optionally substituted by up to three groups selected from halogen, (C1 6) alkyl, or (C1 6) alkoxy; Q is oxygen or NH; R is hydrogen or (C1-6) a'M; R 's hydrogen, (C1 6) alkyl optionally substituted by halogen, (C2 6) alkenyl, (C1 6)alkoxycarbonyl, aryl or heteroaryl; or R and R' together form (C1 6) alkylene; RJ represents hydrogen, (C1 6) alkyl or (C1 6)alkoxycarbonyl; and R represents (C1 8)alkyl, (C1 8)alkoxy, (C1 ^aIkOXy(C1 6)alkoxy or aryl.
Examples of suitable in vivo hydrolysable ester groups include, for example, 8CyIoXy(C1 6)alkyl groups such as acetoxymethyl, pivaloyloxymethyl, acetoxyethyl, pivaloyloxyethyl, 1 -(cyclohexylcarbonyloxy)prop-1-yl, and
(i-aminoethyl)carbonyloxymethyl; (C1 6)alkoxycarbonyloxy(C1 6)alkyl groups, such as ethoxycarbonyloxymethyl, ethoxycarbonyloxyethyl and propoxycarbonyloxyethyl; Cu(C1 ^aIKyIaInJnO(C1 6)alkyl especially CIi(C1 ^alkylamino^ _4)alkyl groups such as dimethylaminomethyl, dimethylaminoethyl, diethylaminomethyl or diethylaminoethyl; 2-(C1 6)alkoxycarbonyl)-2-(C2 6)alkenyl groups such as 2-(isobutoxycarbonyl)pent-2-enyl and 2-(ethoxycarbonyl)but-2-enyl; lactone groups such as phthalidyl and dimethoxyphthalidyl. A further suitable pharmaceutically acceptable in vivo hydrolysable ester-forming group is that of the formula:
Figure imgf000016_0001
wherein R is hydrogen, C1 6 alkyl or phenyl.
R is preferably hydrogen.
Compounds of formula (I) may also be prepared as the corresponding N-oxides. Certain of the compounds of formula (I) may exist in the form of optical isomers, e.g. diastereoisomers and mixtures of isomers in all ratios, e.g. racemic mixtures. The invention includes all such form, including pure isomeric forms. The different isomeric forms may be separated or resolved one from the other by conventional methods, or any given isomer may be obtained by conventional synthetic methods or by stereospecific or asymmetric syntheses.
One of skill in the readily appreciates that optimization for a given reaction may require some routine variation in reaction parmeters such as reaction time, temperature, energy source, pressure, light, pressure, solvent or solvents used, co-reagents, catalysts, and the like.
Protective groups wherever found herein maybe designated by their specific formula or alternatively, maybe referred to generically by P or Pn (wherein n is an integer). It is to be appreciated that where generic descriptors are used, that such descriptors are at each occurrence independent from each other. Thus, a compound with more than one of the same generic descriptors (e.g. P) does not indicate that each P is the same protective group, they maybe the same or different, so long as the group is suitable to the chemistry being employed. Where protection or deprotection is generically referred to, one of ordinary skill in the art will understand this to mean that suitable conditions are employed that will allow for the removal of the protecting group to be removed while minimizing reaction at other positions of the molecule, unless otherwise indicated. Many protective groups and protective group strategies are known to those of skill in the art in maybe found in numerous references including, Greene, et al. "Protective Groups in Organic Synthesis" (Published by Wiley-lnterscience), which is herein incorporated by reference in its entirety. Leaving groups wherever found herein maybe designated by a specific chemical formula, or alternatively, maybe generically referred to as L or Ln (wherein n is an integer). It is to be appreciated that where a generic descriptor is used, that such descriptors are at each occurrence independent from each other. Leaving groups can be single atoms such as Cl, Br, or I1 or maybe a group such as OSO2CH3, OC(=O)CH3, 0(C=O)CF3, OSO2CF3, and the like. Leaving groups may be formed during the course of a reaction and thus a compound containing a leaving group may not always be an isolated material but rather as a reactive intermediate. By way of non-limiting example, a carboxylic acid maybe reacted with a coupling reagent such as DCC, CDI, EDCI, isobutyl chloroformate, etc, and the corresponding reative intermediate thus formed is further reacted with the nucleophilic coupling partner. In such cases, one of skill in the art appreciates that the activation step maybe performed before the introduction of the nucleophilic coupling partner, or in some cases, even in the presence of the nucleophilic coupling partner (depending upon the identity of the particular activating agent, carboxylic acid and nuclephilic coupling partner used). One skilled in the art readily ascertains that leaving groups generally refer to atoms or groups which can be eliminated, substituted or otherwise dissociate during the course of the reaction.
The antibacterial compounds according to the invention may be formulated for administration in any convenient way for use in human or veterinary medicine, by analogy with other antibacterials. The pharmaceutical compositions of the invention include those in a form adapted for oral, topical or parenteral use and may be used for the treatment of bacterial infection in mammals including humans.
The composition may be formulated for administration by any route. The compositions may be in the form of tablets, capsules, powders, granules, lozenges, creams or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
The topical formulations of the present invention may be presented as, for instance, ointments, creams or lotions, eye ointments and eye or ear drops, impregnated dressings and aerosols, and may contain appropriate conventional additives such as preservatives, solvents to assist drug penetration and emollients in ointments and creams. The formulations may also contain compatible conventional carriers, such as cream or ointment bases and ethanol or oleyl alcohol for lotions. Such carriers may be present as from about 1% up to about 98% of the formulation. More usually they will form up to about 80% of the formulation.
Tablets and capsules for oral administration may be in unit dose presentation form, and may contain conventional excipients such as binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, or polyvinylpyrrolidone; fillers, for example lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine; tabletting lubricants, for example magnesium stearate, talc, polyethylene glycol or silica; disintegrants, for example potato starch; or acceptable wetting agents such as sodium lauryl sulphate. The tablets may be coated according to methods well known in normal pharmaceutical practice. Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may contain conventional additives, such as suspending agents, for example sorbitol, methyl cellulose, glucose syrup, gelatin, hydroxyethyl cellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example almond oil, oily esters such as glycerine, propylene glycol, or ethyl alcohol; preservatives, for example methyl or propyl p-hydroxybenzoate or sorbic acid, and, if desired, conventional flavouring or colouring agents. Suppositories will contain conventional suppository bases, e.g. cocoa-butter or other glyceride.
For parenteral administration, fluid unit dosage forms are prepared utilizing the compound and a sterile vehicle, water being preferred. The compound, depending on the vehicle and concentration used, can be either suspended or dissolved in the vehicle. In preparing solutions the compound can be dissolved in water for injection and filter sterilised before filling into a suitable vial or ampoule and sealing.
Advantageously, agents such as a local anaesthetic, preservative and buffering agents can be dissolved in the vehicle. To enhance the stability, the composition can be frozen after filling into the vial and the water removed under vacuum. The dry lyophilized powder is then sealed in the vial and an accompanying vial of water for injection may be supplied to reconstitute the liquid prior to use. Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilization cannot be accomplished by filtration. The compound can be sterilised by exposure to ethylene oxide before suspending in the sterile vehicle. Advantageously, a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the compound. The compositions may contain from 0.1% by weight, preferably from 10-60% by weight, of the active material, depending on the method of administration. Where the compositions comprise dosage units, each unit will preferably contain from 50-500 mg of the active ingredient. The dosage as employed for adult human treatment will preferably range from 100 to 3000 mg per day, for instance 1500 mg per day depending on the route and frequency of administration. Such a dosage corresponds to 1.5 to 50 mg/kg per day. Suitably the dosage is from 5 to 20 mg/kg per day.
No toxicological effects are indicated when a compound of formula (I) or a pharmaceutically acceptable derivative thereof is administered in the above-mentioned dosage range.
The compound of formula (I) may be the sole therapeutic agent in the compositions of the invention or a combination with other antibacterials. If the other antibacterial is a β-lactam then a β-lactamase inhibitor may also be employed.
Compounds of formula (I) are active against a wide range of organisms including both Gram-negative and Gram-positive organisms.
The compounds of this invention may also be used in the manufacture of medicaments useful in treating bacterial infections in humans or other mammals.
All publications, including but not limited to patents and patent applications, cited in this specification are herein incorporated by reference (whether specifically stated to be so or not) as if each individual publication were specifically and individually indicated to be incorporated by reference herein as though fully set forth.
The following examples illustrate the preparation of certain compounds of formula (I) and the activity of certain compounds of formula (I) against various bacterial organisms.
The stereochemistry where shown for specific examples is relative only. The compounds of the present invention were prepared by the methods illustrated in Schemes I, Il and III. One of skill in the art readily appreciates that although the following schemes describe specific examples, they maybe more generally applied to produce additional embodiments of this invention. Furthermore, the examples set forth below are illustrative of the present invention and are not intended to limit, in any way, the scope of the present invention. Scheme I
Figure imgf000020_0001
Figure imgf000020_0002
1-5
Reagents and conditions: (a) TFA, CH2CI2, RT; (b) 8-ethenyl-2-(methyloxy)-1 ,5- naphthyridine, DMF, 100 0C; (c) Pd(OH)2, H2 (1atm), EtOH, RT; (d) 3-oxo-3,4-dihydro- 2H-pyrido[1 ,4]thiazine-6-carboxaldehyde, CH2CI2, EtOH; then NaBH4, EtOH.
Removal of the Boc group from 1-1 [Chem. Eur. J. 2002, 8 , No. 16] was achieved with TFA in methylene chloride to afford amine I-2. Amine I-2 was then heated with 8- ethenyl-2-(methyloxy)-1 ,5-naphthyridine in DMF generating the product 1-3. Deprotection of the benzyl functionality was performed under hydrogenolysis conditions to give amine I- 4. The primary amine derivative 1-4 was then converted to a secondary amine 1-5 by reaction with 3-oxo-3,4-dihydro-2/-/-pyrido[1 ,4]thiazine-6-carboxaldehyde and subsequent reduction. Depending on whether acid neutralization is required, an added base, such as triethylamine (Et3N), diisopropylethylamine ((J-Pr)2NEt), or K2Cθ3, may be used. Many additional methods for reductive aminations are known, and can be found in standard reference books, such as "Compendium of Organic Synthetic Methods", Vol. I - Vl (published by Wiley-lnterscience), herein incorporated by reference in its entirety. Scheme Il
Figure imgf000021_0001
11-4 11-5
Figure imgf000021_0002
11-6
Reagents and conditions: (a) BnCI1 Et2O, the NaBH4, EtOH; (b) CH2ICI, Zn/Cu, Et2O; (c) Pd/C, H2, EtOH; (d) 8-ethenyl-2-(methyloxy)-1 ,5-naphthyridine, DMF, 100 0C; (e) TFA, DCM, RT; (f) 3-oxo-3,4-dihydro-2/-/-pyrido[1 ,4]thiazine-6-carboxaldehyde, CH2CI2, EtOH; then NaBH4, EtOH.
Quaternization and reduction of the pyridine species 11-1 was accomplished in one pot with the use of NaBH4. For further description of this method, see "Borane Reagents" in the Best Synthetic Methods series by Pelter, Smith and Brown which is herein incorporated by reference in its entirety. Cyclopropanation of the alkene moiety was accomplished with CH2ICI and Zn/Cu to afford cyclopropyl derivative 11-3. Cycloproponation reactions are well known to those skilled in the art of organic synthesis and can be achieved using several classical organometallic reagents, see, for example, the text "Principles and Applications of Organotransition Metal Chemistry" by Collman, Hegedus, Norton and Finke; University Science Books, which is herein incorporated by reference in its entirety. Hydrogenolysis of the benzyl group afforded amine 11-4 which was subsequently heated with 8-ethenyl-2-(methyloxy)-1 ,5-naphthyridine in DMF to afford II-5. Removal of the Boc group was achieved with TFA in methylene chloride to afford the free amine which was then reacted with 3-oxo-3,4-dihydro-2H-pyrido[1 ,4]thiazine-6- carboxaldehyde which was subsequently reduced to form an imine which was subsequently reduced to yield 11-6.
Scheme
Figure imgf000022_0001
IH-1 II-2
Reagents and conditions: (a) EDC-HCl, HOBt, (/-Pr)2NEt, DMF, 3-oxo-3,4-dihydro-2H- pyrido[3,2-fc>][1 ,4]thiazine-6-carboxylic acid.
Amine 111-1 (prepared as described in the General section, infra), was coupled to 3- oxo-3,4-dihydro-2H-pyrido[3,2-t»][1 ,4]thiazine-6-carboxylic acid using EDC-HCI and HOBT. Many additional methods for converting a carboxylic acid to an amide are known to those of skill in the art, and can be found in, for example, standard reference books, such as "Compendium of Organic Synthetic Methods", Vol. I - Vl (published by Wiley- Interscience), or Bodansky, "The Practice of Peptide Synthesis" (published by Springer- Verlag), which are herein incorporated by reference, in their entirety.
General
Proton nuclear magnetic resonance 0 H NMR) spectra were recorded at 300 MHz, and chemical shifts are reported in parts per million (δ) downfield from the internal standard tetramethylsilane (TMS). Abbreviations for NMR data are as follows: s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet, dd = doublet of doublets, dt = doublet of triplets, app = apparent, br = broad. J indicates the NMR coupling constant measured in Hertz. CDCI3 is deuteriochloroform, DMSO-d6 is hexadeuteriodimethylsulfoxide, and CD3OD is tetradeuteriomethanol. Mass spectra were obtained using electrospray (ES) ionization techniques. Elemental analyses were performed by Quantitative Technologies Inc., Whitehouse, NJ. Melting points were obtained on a Thomas-Hoover melting point apparatus and are uncorrected. All temperatures are reported in degrees Celsius. E. Merck Silica Gel 60 F-254 thin layer plates were used for thin layer chromatography. Flash chromatography was carried out on E. Merck Kieselgel 60 (230-400 mesh) silica gel. Analytical HPLC was performed on Beckman chromatography systems. Preparative HPLC was performed using Gilson chromatography systems. ODS refers to an octadecylsilyl derivatized silica gel chromatographic support. YMC ODS-AQ® is an ODS chromatographic support and is a registered trademark of YMC Co. Ltd., Kyoto, Japan. PRP-1(S> is a polymeric (styrene-divinylbenzene) chromatographic support, and is a registered trademark of Hamilton Co., Reno, Nevada. Celite® is a filter aid composed of acid-washed diatomaceous silica, and is a registered trademark of Manville Corp., Denver, Colorado.
Preparation 1
Figure imgf000023_0001
Preparation of 8-ethenyl-7-fluoro-2-(methyloxy)-1.5-naphthyridine
a) (2-r(6-Methoxypyridin-3-ylamino)methylenelmalonic acid diethyl ester
A solution of 5-amino-2-methoxypyridine (Aldrich, 100g, 0.806 mole) and diethyl ethoxymethylenemalonate (Aldrich, 163 mL, 0.806 mole) in EtOH (1 L) was heated at reflux for 4 hours, then was cooled to RT. Concentration to dryness gave the title compound (238 g, quantitative).
b) 6-Methoxy-4-oxo-1.4-dihydro-π .Slnaphthyridine-S-carboxylic acid ethyl ester
Dowtherm A (Fluka, 500 mL) was brought to boiling (250 0C) in a 2 L 3-neck flask fitted with a still-head and a reflux condenser. 2-[(6-Methoxypyridin-3- ylamino)methylene]malonic acid diethyl ester (100 g, 0.34 mole) was added portionwise over 5 min. The solution was heated at reflux for an additional 15 min, allowing some solvent to distil over. The resulting solution was cooled to RT and diluted with hexanes (750 mL). The mixture was cooled in ice for 1 hr, then the brown solid was filtered off, washed with hexanes, and dried under vacuum to afford the title compound (61.72g, 73%).
c) 4-Bromo-6-methoxy-f1 ,51naphthyridine-3-carboxylic acid ethyl ester A suspension of 6-methoxy-4-oxo-1 ,4-dihydro-[1 ,5]naphthyridine-3-carboxylic acid ethyl ester (74.57 g, 300 mmole) in dry DMF (260 ml_) under argon was stirred efficiently* in a water bath (to maintain approximately RT - may need slight ice-cooling on a large scale). Phosphorus tribromide (30.0 mL, 316 mmole) was added dropwise over 15 min and stirring was continued for an additional 30 min. Water (1 L) was added, followed by saturated sodium carbonate solution to pH 7. The solid was collected by suction filtration, washed with water and dried under vacuum over phosphorus pentoxide to give the title compound (83.56 g, 90%).
d) 4-Bromo-6-methoxy-H .51naphthyridine-3-carboxylic acid 2 N NaOH (300 mL, 600 mmole) was added dropwise over 30 min to a stirred solution of 4-bromo-6-methoxy-[1 ,5]naphthyridine-3-carboxylic acid ethyl ester (83.56 g, 268 mmole) in THF (835 mL). Stirring was continued overnight, at which time LC/MS showed that the saponification was complete. 2 N HCI was added to pH 6 and the THF was removed in vacuo. 2 N HCI was added to pH 2, then water (250 mL) was added, and the mixture was cooled thoroughly in ice. The solid was collected by suction filtration, washed with water and dried (first using a rotary evaporator at 50 0C and then under high vacuum at 50 0C overnight) to give the title compound (76.7 g, slightly over quantitative). This material was used without further purification.
e) 4-Bromo-6-methoxy-H ,51naphthyridin-3-ylamine
A suspension of 4-bromo-6-methoxy-[1 ,5]naphthyridine-3-carboxylic acid (50 g, 177 mmole) in dry DMF (600 mL) was treated with triethylamine (222.5 mL, 1.60 mole), te/t-butanol (265 mL, 2.77 mole), and diphenylphosphoryl azide (41.75 mL, 194 mmole). The reaction was stirred under argon at 100 0C for 1 hr, then was cooled to RT and concentrated to low volume. Ethyl acetate and excess aqueous sodium bicarbonate solution were added, the mixture was shaken, and some insoluble solid was filtered off. The layers were separated and the organic phase was washed with water (2x) and dried (MgSC>4). Concentration to dryness gave a crude mixture of 4-bromo-6-methoxy- [1 ,5]naphthyridin-3-ylamine (minor product) and (4-bromo-6-methoxy-[1 ,5]naphthyridin-3- ylamine)carbamic acid tert-butyl ester (major product) along with impurities. Without further purification, this mixture was dissolved in CH2CI2 (150 ml_) and treated with trifluoroacetic acid (100 mL). The reaction was stirred for 3 hr then was concentrated to dryness. The residue was partitioned between CHCI3 and saturated sodium bicarbonate solution and the layers were separated. The aqueous phase was extracted with CHCI3, and the combined organics were dried (MgSθ4) and concentrated to low volume. The solid was collected by suction filtration, washed with a small volume of CHCI3 and dried under vacuum to afford a first crop of the title compound (31.14 g). The filtrate was purified by flash chromatography on silica gel (30% EtOAc/CHCl3) to afford further material (2.93 g, total = 34.07 g, 76%). Alternatively, the filtrate was left at RT overnight and then filtered to give a second crop of the title compound (2.5 g).
f) 4-Bromo-6-methoxy-π .51naphthyridine-3-diazonium tetrafluoroborate
A solution of 4-bromo-6-methoxy-[1 ,5]naphthyridin-3-ylamine (25.2 g, 99.2 mmole) in dry THF (400 mL) was maintained at -5 0C while nitrosonium tetrafluoroborate (12.9 g, 110 mmole) was added portionwise over 30 min (approximately 2 g portions). The reaction was continued for an additional 1 hr at -5 0C, at which time TLC and LC/MS indicated that the reaction was complete. The orange solid was collected by suction filtration, washed with ice-cold THF and dried under vacuum to provide the title compound (31.42 g, 90%).
g) 4-Bromo-3-fluoro-6-methoxy-f1.51naphthyridine
A suspension of 4-bromo-6-methoxy-[1 ,5]naphthyridine-3-diazonium tetrafluoroborate (31.42 g, 89.0 mmole) in decalin (mixed isomers, 500 mL) in a 2 L flask* was heated to 180 0C and held at this temperature for 5 min. The mixture was cooled and diluted with CHCI3 (500 mL, to keep the product in solution), and the resulting mixture was stirred vigorously for 30 min to break up a black solid byproduct. The mixture was then poured onto a column of silica gel and the column was eluted with CHCI3 to remove decalin and then with 3% EtOAc/CHCl3 to afford the title compound (9.16 g, 40%).
h) 8-ethenyl-7-fluoro-2-(methyloxy)-1.5-naphthyridine
To a solution of 8-bromo-7-fluoro-2-(methyloxy)-1 , 5-naphthyridine (2.0 g, 7.81 mmol), potassium carbonate (1.08 g, 7.81 mmole), tetrakis-triphenylphosphine (90 mg, 0.08 mmole) in DME (60 mL) and H2O (20 mL) was added 2,4,6-trivinylcycloborane- pyridine complex (0.94 g, 3.91 mmole). After stirring for 10 hours at 850C the reaction contents were concentrated and the product purified by chromatography on silica gel (hexanes/EtOAc, 4:1 ) to give a low melting solid (1.43 g, 90%). Preparation 2
Figure imgf000026_0001
Preparation of 8-ethenyl-2-(methyloxy)-1 ,5-naphthyridine
According to Preparation 1 , except substituting 6-(methyloxy)-1 ,5-naphthyridin-4-yl thfluoromethanesulfonate (5.0 g, 16.23 mmole) for 8-bromo-7-fluoro-2-(methyloxy)-1 ,5- naphthyridine, the title compound was prepared (2.11 g, 70%) to give a yellow oil : LC-MS (m/z) (ES) 187 (M+H)+.
Preparation 3
Figure imgf000026_0002
Preparation of 3-Oxo-3.4-dihvdro-2/-/-pyridof3.2-biπ .41oxazine-6-carboxaldehyde
a) 2-Bromo-5-hvdroxy-6-nitropyridine
3-Hydroxy-2-nitropyridine (20 g, 0.143 mole) was dissolved in methanol (400 mL) and a solution of 25% sodium methoxide in methanol (33 mL, 0.13 mole) was added at room temperature. The mixture was stirred for 30 min, then was cooled to 0 0C, and bromine (7.2 mL, 0.14 mole) was added slowly. The reaction was stirred at 0 0C for 30 min, then was quenched with glacial AcOH (2.5 mL). The solvent was removed in vacuo to afford material (30 g, 96%), which was used without further purification. MS (ES) m/z 219.0 (M + H)+.
b) Ethyl (6-bromo-2-nitro-pyridin-3-yloxy)acetate
2-Bromo-5-hydroxy-6-nitropyridine (30 g, 0.14 mole) was suspended in acetone
(200 ml), and potassium carbonate (39 g, 0.28 mole) was added, followed by ethyl bromoacetate (15.7 ml, 0.14 mmole). The reaction was heated at reflux for 10 hr, then was cooled to room temperature and diluted with Et2θ. The precipitate was removed by suction filtration, and the filtrate was concentrated in vacuo to afford material (38 g, 89%), which was used without further purification; MS (ES) m/z 305.0 (M + H)+.
c) 6-Bromo-4/-/-pyridor3,2-biπ ,41oxazin-3-one Ethyl (6-bromo-2-nitro-pyridin-3-yloxy)acetate (38 g, 0.125 mole) was dissolved in glacial AcOH (150 ml_), and iron powder (20 g, 0.36 mole) was added. The mixture was mechanically stirred and heated at 90 0C for 5 hr, then was cooled to room temperature and diluted with EtOAc (300 ml_). The mixture was filtered through a pad of silica gel and the filtrate was concentrated in vacuo and the residue recrystallized from MeOH (15 g, 52%); MS (ES) m/z 229.0 (M + H)+.
d) 6-«a-Styryl)-4H-pyridor3.2-blH .41oxazin-3-one
6-Bromo-4/-/-pyrido[3,2-b][1 ,4]oxazin-3-one (6.0 g, 26.3 mmole) and trans-2- phenylvinylboronic acid (3.9 g, 26.3 mmole) were dissolved in 1 ,4-dioxane (150 ml.) and the solution was degassed with argon. (Ph3P)4Pd (230 mg, 0.2 mmole) was added, followed by a solution of potassium carbonate (6.9 g, 50 mmole) in H2O (20 ml_). The reaction was heated at reflux under argon overnight, then was cooled to room temperature and diluted with EtOAc (200 ml_). The solution was washed sequentially with H2O and brine, dried (Na2SO4), and concentrated in vacuo. The solid residue was purified by flash chromatography on silica gel (5-10% EtOAc/CHC^) to afford a solid (2.5 g, 38%). MS (ES) m/z 253.0 (M + H)+.
e) 3-Oxo-3.4-dihvdro-2/-/-pyridor3.2-biπ .41oxazine-6-carboxaldehvde
6-((£)-Styryl)-4H-pyrido[3,2-ij][1 ,4]oxazin-3-one (1.2 g, 4.8 mmole) was dissolved in CH2CI2 (200 mL) and the solution was cooled to -78 0C. Ozone was bubbled through the solution with stirring until a pale blue color appeared, then the excess ozone was removed by bubbling oxygen through the solution for 15 min. Dimethylsulfide (1.76 mL, 24 mmole) was added to the solution, and the reaction was stirred at -78 0C for 3 hr, then at room temperature overnight. The solvent was removed in vacuo, and the residue was triturated with Et2θ (50 mL). The collected solid was washed with additional Et2θ and dried to afford a solid (700 mg, 82%). MS (ES) m/z 179.0 (M + H)+. Preparation 4
Figure imgf000028_0001
Preparation of 3-Oxo-3.4-dihvdro-2/-/-pyridor3,2-fc>1[1.41thiazine-6-carboxaldehvde
a) Methyl 3-oxo-3.4-dihvdro-2/-/-pyridor3.2-blM .41thiazine-6-carboxylate
A solution of ethyl 2-mercaptoacetate (1.473 ml_) in DMF (48 mL) was ice-cooled and treated with sodium hydride (540 mg of a 60% dispersion in oil). After 1 hour methyl β-amino-δ-bromopyridine^-carboxylate (3 g) (T.R. Kelly and F. Lang, J. Org. Chem. 61, 1996, 4623-4633) was added and the mixture stirred for 16 hours at room temperature. The solution was diluted with EtOAc (1 litre), washed with water (3 x 300 mL), dried and evaporated to about 10 mL. The white solid was filtered off and washed with a little EtOAc to give the ester (0.95g); MS (APCI") m/z223 ([M-H]", 100%).
b) 3-Oxo-3.4-dihvdro-2/-/-pyridor3,2-friπ ,41thiazine-6-carboxylic acid
A solution of Methyl 3-oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazine-6-carboxylate (788 mg) in dioxan (120 ml)/water (30 mL) was treated dropwise over 2 hours with 0.5M NaOH solution (8 mL) and stirred overnight. After evaporation to approx. 3 ml, water (5 mL) was added and 2M HCI to pH4. The precipitated solid was filtered off, washed with a small volume of water and dried under vacuum to give a solid (636 mg); MS (APCI") m/z 209 ([M-H]", 5%), 165([M-COOH]", 100%).
c) 6-Hvdroxymethyl-3-oxo-3.4-dihvdro-2/-/-pyrido[3,2-b1[1.41thiazine
A solution of 3-Oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazine-6-carboxylic acid (500mg) in THF (24 mL) with triethylamine (0.396 mL) was cooled to -100C and isobutyl chloroformate (0.339ml) added. After 20 minutes the suspension was filtered through kieselguhr into an ice-cooled solution of sodium borohydride (272 mg) in water (8 mL), the mixture stirred 30 minutes and the pH reduced to 7 with dilute HCI. The solvent was evaporated and the residue triturated under water. The product was filtered and dried under vacuum to give a white solid (346mg); MS (APCI") m/z 195 ([M-H]", 50%), 165(100%). d) S-Oxo-S.Φdihvdro^AV-pyriclors^-biπ .^thiazine-θ-carboxaldehvde
A solution of 6-Hydroxymethyl-3-oxo-3,4-dihydro-2H-pyrido[3,2-jb][1 ,4]thiazine (330 mg) in dichloromethane (30 mL)/THF (30 ml_) was treated with manganese dioxide (730 mg) and stirred at room temperature. Further manganese dioxide was added after 1 hour (730 mg) and 16 hours (300 mg). After a total of 20 hours the mixture was filtered through kieselguhr and the filtrate evaporated. The product was triturated with EtOAc/hexane (1 :1 ) and collected to give a solid (180mg); MS (APCI") m/z 195 ([M-H]-, 95%), 165 (100%).
Preparation 5
Figure imgf000029_0001
Preparation of 3-oxo-3.4-dihvdro-2/-/-pyridor3.2-blH .41thiazine-6-carboxylic acid
This acid was prepared from 3-Oxo-3,4-dihydro-2H-pyrido[3,2-b][1 ,4]thiazine-6- carboxaldehyde (890 mg) by oxidation with Oxone (potassium peroxymonosulphate) (3.1 g) in a DMF solution (50 ml_). After 1.5 hours at room temperature, dilution with water (50 ml_) filtration and drying in vacuo afforded the acid as a white solid (750 mg, 77%).
Preparation 6
Figure imgf000029_0002
a) 2-Bromo-5-hvdroxy-6-nitropyridine 3-Hydroxy-2-nitropyridine (20 g, 0.143 mole) was dissolved in methanol (400 ml_) and a solution of 25% sodium methoxide in methanol (33 ml_, 0.13 mole) was added at room temperature. The mixture was stirred for 30 min, then was cooled to 0 0C, and bromine (7.2 mL, 0.14 mole) was added slowly. The reaction was stirred at 0 0C for 30 min, then was quenched with glacial AcOH (2.5 ml_). The solvent was removed in vacuo to afford material (30 g, 96%), which was used without further purification. MS (ES) m/z 219.0 (M + H)+.
b) Ethyl (6-bromo-2-nitro-pyridin-3-yloxy)acetate
The hydroxypyridine (30 g, 0.14 mole) was suspended in acetone (200 ml), and potassium carbonate (39 g, 0.28 mole) was added, followed by ethyl bromoacetate (15.7 ml, 0.14 mmole). The reaction was heated at reflux for 10 hr, then was cooled to room temperature and diluted with Et2θ. The precipitate was removed by suction filtration, and the filtrate was concentrated in vacuo to afford material (38 g, 89%), which was used without further purification. MS (ES) m/z 305.0 (M + H)+.
c) 6-Bromo-4H-pyridof3.2-biπ ,41oxazin-3-one The nitropyridine (38 g, 0.125 mole) was dissolved in glacial AcOH (150 ml_), and iron powder (20 g, 0.36 mole) was added. The mixture was mechanically stirred and heated at 90 0C for 5 hr, then was cooled to room temperature and diluted with EtOAc (300 mL). The mixture was filtered through a pad of silica gel and the filtrate was concentrated in vacuo and the residue recrystallized from MeOH (15 g, 52%). MS (ES) m/z 229.0 (M + H)+.
d) 6-«a-Styrvn-4H-pyridor3,2-biπ ,41oxazin-3-one
The bromopyridine (10c) (6.0 g, 26.3 mmole) and frans-2-phenylvinylboronic acid (3.9 g, 26.3 mmole) were dissolved in 1 ,4-dioxane (150 mL) and the solution was degassed with argon. (Ph3P)4Pd (230 mg, 0.2 mmole) was added, followed by a solution of potassium carbonate (6.9 g, 50 mmole) in H2O (20 mL). The reaction was heated at reflux under argon overnight, then was cooled to room temperature and diluted with EtOAc (200 mL). The solution was washed sequentially with H2O and brine, dried (Na2SO4), and concentrated in vacuo. The solid residue was purified by flash chromatography on silica gel (5-10% EtOAc/CHCl3) to afford a solid (2.5 g, 38%). MS (ES) m/z 253.0 (M + H)+.
e) 3-Oxo-3.4-dihvdro-2/-/-pyridof3.2-blf1.4loxazine-6-carboxaldehvde
The pyridine (10d) (1.2 g, 4.8 mmole) was dissolved in CH2CI2 (200 mL) and the solution was cooled to -78 0C. Ozone was bubbled through the solution with stirring until a pale blue color appeared, then the excess ozone was removed by bubbling oxygen through the solution for 15 min. Dimethylsulfide (1.76 ml_, 24 mmole) was added to the solution, and the reaction was stirred at -78 0C for 3 hr, then at room temperature overnight. The solvent was removed in vacuo, and the residue was triturated with Et2θ (50 ml_). The collected solid was washed with additional Et2θ and dried to afford a solid (700 mg, 82%); MS (ES) m/z 179.0 (M + H)+.
f) 6-Bromo-7-chloro-4H-pyridor3.2-blH .41oxazin-3-one
6-Bromo-4H-pyrido[3,2-b][1 ,4]oxazin-3-one (2Og, 87.7 mmole) was dissolved in DMF (175 ml.) and cooled in an ice bath. Chlorine gas was then slowly bubbled in for 45 minutes, and then the saturated solution was stirred in the ice bath for 2 hours. The mixture was purged with nitrogen and slowly added with stirring to 1 L of ice water which contained 100g of Na2SO3, making sure to keep the temperature <15 0C. After stirring 30 minutes the product was filtered, washed thoroughly with water and dried to afford (22.5g, 98%) of a white solid.
1H NMR (400 MHz, DMSO-c/6): 4.76 (2H, S,), 7.78 (1 H1 s),11.71 (1 H, s).
q) 7-Chloro-6-((E)-styryl)-4/-/-pyridor3.2-biπ .41oxazin-3-one
6-Bromo-7-chloro-4/-/-pyrido[3,2-b][1 ,4]oxazin-3-one (22 g, 83.7 mmole) and trans- 2-phenylvinylboronic acid (17.33 g, 1 17 mmole) were dissolved in 1 ,4-dioxane (300 mL) and the solution was degassed with argon. (PhβP^Pd (1.9 g, 2 mole %) was added, followed by a solution of potassium hydrogen carbonate (21 g, 210 mmole) in H2O (100 mL). The reaction was heated at reflux under argon overnight, then was cooled to room temperature and diluted with ethyl acetate (1 L). The solution was washed sequentially with H2O and brine, dried (Na2SO4), and concentrated in vacuo. The residue was slurried with chloroform (120 mL), then diluted with diethyl ether (100 mL). The precipitated product was collected by filtration and washed with ether to provide the product (16.4 g, 68%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6): 4.71 (2H, s), 7.32-7.46 (3H, m), 7.54-7.74 (4H, m), 11.6 (1 H, s).
h) 7-Chloro-3-oxo-3.4-dihvdro-2H-pyridor3,2-biπ .41oxazine-6-carboxaldehvde
7-Chloro-6-((E)-styryl)-4H-pyrido[3,2-t»][1 ,4]oxazin-3-one (8.0 g, 27.9 mmole) was dissolved in a mixture of DMF (400 mL) and methanol (40 mL), and the solution was cooled to -78 0C. Ozone was bubbled through the solution with stirring for 45 minutes, then the excess ozone was removed by bubbling oxygen through the solution for 30 min. Dimethylsulfide (21 mL, 279 mmole) was added to the solution, and the reaction was stirred at -78 0C for 3 hr, then at room temperature overnight. The solvent was removed in vacuo, and the residue was triturated with Et2<D (150 mL). The collected solid was washed with additional Et2θ and dried to afford a white solid (4 g, 68%). 1H NMR (400 MHz1 DMSO-cf6): 4.86 (2H, m), 7.73 (1 H, s); 10.05 (1 H, s), 11.84 (1 H, s).
Example 1
Figure imgf000032_0001
Preparation of 6-(f(3-(2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-yl1ethyl)-3- azabicvclo[3.1.0lhex-6-yl)amino1methyl)-2/-/-pyridor3.2-bin .4lthiazin-3(4/-/)-one a) Λ/,Λ/-bis(phenylmethyl)-3-azabicyclo[3.1.0]hexan-6-amine
To a stirred solution of 1 ,1 -dimethylethyl 6-[bis(phenylmethyl)amino]-3- azabicyclo[3.1.0]hexane-3-carboxylate [Chem. Eur. J. 2002, 8 , No. 16] (7.0 g, 18.5 mmole), in dry CH2CI2 (200 mL) at RT was added trifluoroacetic acid (75 mL). After 2h at RT, the reaction contents were concentrated under vacuum. The residue was dissolved in CHCI3 and washed with saturated aqueous NaHCU3. The organic phase was separated and dried over Na2SC>4 and concentrated in vacuo to give the title compound (5.1 g, 99%) as colorless oil: LC-MS (ES) m/e 279 (M+H)+.
b) 3-(2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-yllethyl)-Λ/.Λ/-bis(phenylmethyl)-3- azabicvclof3.1.Olhexan-6-amine
To a stirred solution of Λ/,Λ/-bis(phenylmethyl)-3-azabicyclo[3.1.0]hexan-6-amine (1.02 g, 3.67 mmole), in DMF (5 mL) was added 8-ethenyl-7-fluoro-2-(methyloxy)-1 ,5- naphthyridine (0.75 g, 3.67 mmole). After 24h at 100 0C, the reaction contents were concentrated under vacuum and purified on silica (CHCl3/MeOH, 9:1 containing 5%
NH4OH) to give the title compound (1.38 g, 78%) as light yellow oil: LC-MS (ES) m/e 483
(M + H)+.
c) 3-(2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-vnethyl)-3-azabicvclor3.1.Olhexan-6- amine To a stirred solution of 3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}- Λ/,Λ/-bis(phenylmethyl)-3-azabicyclo[3.1.0]hexan-6-amine (1.38 g, 2.86 mmole) in MeOH (100 ml_) was added Pearlman's catalyst (200 mg). After 48h at RT under 1 atmosphere of H2 with stirring, the reaction contents were filtered through celite (MeOH) and concentrated under vacuum to give the title compound (0.86 g, 93%) as light yellow oil: LC-MS (ES) m/e 303 (M + H)+.
(d) 6-(f(3-(2-f3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yllethyl)-3-azabicyclor3.1.OIhex-6- yl)aminolmethyl)-2H-pyridor3.2-blM .41thiazin-3(4H)-one To a stirred solution of 3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hexan-6-amine (0.14 g, 0.46 mmole) in dry CH2CI2 (25 mL) and dry EtOH (20 mL) at RT was added 3-oxo-3,4-dihydro-2/-/-pyrido[1 ,4]thiazine-6- carboxaldehyde (0.15 g, 0.77 mmole). After 24h, at RT was added NaBH4 (19 mg, 0.51 mmole). After 6h more, silica gel (5 g) was added to the reaction solution and the suspension was concentrated under vacuum to a dry solid. Purification on silica
(CHCl3/MeOH, 9:1 containing 5% NH4OH) afforded the title compound (0.25 g, 70%) as white foam: 1 H NMR (400 MHz, CD3OD) δ 8.78 (br s, 1 H), 8.58 (s, 1 H), 8.17 (d, J = 9.0 Hz, 1 H), 7.56 (d, J = 7.2 Hz1 1 H), 7.07 (d, J = 9.0 Hz, 1 H), 6.90 (d, J = 7.8 Hz, 1 H), 4.09 (s, 3H), 3.80 (s, 2H), 3.48 (m, 2H), 3.32 (m, 2H), 3.18 (d, J = 8.7 Hz, 2H), 2.80 (m, 2H), 2.55 (d, J = 8.7 Hz, 2H), 2.37 (s, 1 H), 1.50 (br s, 2H). LC-MS (ES) m/e 481 (M + H)+.
Example 2
Figure imgf000033_0001
Preparation of 6-(f(3-l2-r6-(methyloxy)-1.5-naphthyridin-4-yllethyl)-3-azabicvclor3.1.Oihex- 6-vnaminolmethyl)-2/-/-pyridor3.2-biπ .41thiazin-3(4H)-one
According to the procedure of Example 1 , except substituting 8-ethenyl-2- (methyloxy)-i ,5-naphthyridine (1.0 g, 5.39 mmole) for 8-ethenyl-7-fluoro-2-(methyloxy)- 1 ,5-naphthyridine, the title compound was produced as a off-white solid: 1 H NMR (400 MHz, CDCI3) δ 8.75 (d, J = 5.6 Hz, 1 H), 8.19 (d, J = 9.0 Hz, 1 H), 7.56 (d, J = 7.2 Hz, 1 H), 7.37 (d, J = 5.6 Hz1 1 H), 7.10 (d, J = 9.0 Hz, 1 H), 6.88 (d, J = 7.8 Hz, 1 H), 4.09 (s, 3H), 3.80 (s, 2H), 3.48 (m, 2H), 3.32 (m, 2H), 3.18 (d, J = 8.7 Hz, 2H), 2.80 (m, 2H), 2.55 (d, J = 8.7 Hz, 2H), 2.37 (s, 1 H), 1.50 (br s, 2H). LC-MS (ES) m/e 463 (M + H)+.
Example 3
Figure imgf000034_0001
Preparation of 6-fr(3-(2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-vnethyll-3- azabicvclor3.1.0lhex-6-vπaminolmethyl)-2/-/-pyridor3.2-biπ .41oxazin-3(4H)-one
According to the procedure of Example 1 , except substituting 3-oxo-3,4-dihydro-
2H-pyrido[1 ,4]oxazine-6-carboxaldehyde (0.23 g, 1.32 mmole) for 3-oxo-3,4-dihydro-2H- pyrido[1 ,4]thiazine-6-carboxaldehyde, the title compound was produced as a off-white solid: 1 H NMR (400 MHz, CDCI3) δ 8.55 (s, 1 H)1 8.13 (d, J = 9.0 Hz, 1 H), 7.08 (d, J = 7.8 Hz, 1 H), 7.02 (d, J = 9.0 Hz, 1 H), 7.10 (d, J = 8.0 Hz, 1 H), 6.78 (d, J = 8.0 Hz, 1 H), 4.55 (S, 2H), 4.04 (s, 3H), 3.73 (s, 2H), 3.28 (m, 4H), 2.84 (m, 2H), 2.53 (m, 2H), 2.27 (br S, 1 H), 1.55 (br s, 2H). LC-MS (ES) m/e 465 (M + H)+.
Example 4
Preparation of 7-chloro-6-(r(3-(2-r3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yllethyl)-3- azabicvclof3.1.0lhex-6-yl)aminolmethyl)-2H-pyridof3.2-£)iπ ,41oxazin-3(4/-/)-one
Figure imgf000034_0002
According to the procedure of Example 1 , except substituting 7-chloro-3-oxo-3,4- dihydro-2H-pyrido[3,2-b][1 ,4]oxazine-6-carbaldehyde (0.28 g, 1.32 mmole) for 3-oxo-3,4- dihydro-2H-pyrido[1 ,4]thiazine-6-carboxaldehyde, the title compound was produced as a off-white solid: 1 H NMR (400 MHz, CDCI3) δ 8.41 (s, 1 H), 8.08 (d, J = 9.0 Hz, 1 H), 7.03 (s, 1 H), 6.99 (d, J = 9.0 Hz, 1 H), 4.49 (s, 2H), 4.04 (s, 3H), 3.80 (s, 2H), 3.41 (d, J = 4.8 Hz, 2H), 3.39 (m, 2H), 2.95 (m, 2H), 2.61 (m, 2H), 2.12 (br s, 1 H)1 1.62 (br S, 2H). LC-MS (ES) m/e 499 (M + H)+.
Example 5
Figure imgf000035_0001
Preparation of Λ/-(3-(2-f3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-vnethyl)-3- azabicvclo[3.1.01hex-6-yl)-3-oxo-3.4-dihvdro-2/-/-pyridof3.2-biπ .41thiazine-6-carboxamide
To a stirred solution of (1 F?,5S)-3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4- yl]ethyl}-3-azabicyclo[3.1.0]hexan-6-amine (1.5 g, 4.49 mmole) in dry in DMF (25 mL) at RT was added diisopropylethylamine (0.69 mL, 3.96 mmole), 3-oxo-3,4-dihydro-2H- pyrido[3,2-}][1 ,4]thiazine-6-carboxylic acid (0.30 g, 1.45 mmole), hydroxybenzotriazole hydrate (0.20 g, 1.45 mmole) and EDC (0.28 g, 1.45 mmole). After 18h, the reaction contents were concentrated under high vacuum. Purification on silica (CHCl3/MeOH, 9:1 containing 5% NH4OH) afforded the title compound (0.37 g, 57%) as a light yellow solid: 1 H NMR (400 MHz, CD3OD) δ 8.66 (s, 1 H)1 8.21 (d, J = 9.0 Hz1 1 H), 7.90 (m, 1 H), 7.71 (d, J = 7.8 Hz, 1 H), 7.19 (d, J = 9.0 Hz, 1 H), 4.15 (s, 3H), 3.61 (m, 2H), 3.41 (m, 2H), 3.13 (m, 2H), 3.05 (m, 2H), 2.89 (m, 2H), 2.62 (d, J = 8.9 Hz, 2H), 1.75 (br s, 1 H). LC-MS (ES) m/e 495 (M + H)+.
Example 6
Figure imgf000035_0002
Preparation of 6-{r(3-(2-r6-(methyloχy)-1.5-naphthyridin-4-yllethyl)-3-azabicyclor4.1.Olhept-
6-yl)aminolmethyl)-2H-pyridor3.2-biπ .41thiazin-3(4H)-one a) 1 ,1-dimethylethyl 4-pyridinylcarbamate
Figure imgf000036_0001
To 4-pyridinamine (3.0 g, 31.87 mmol) in MeCN (159 mL) at 25°C was added bis(1 ,1- dimethylethyl) dicarbonate (9 mL, 38.2 mmol). The solution stirred for 0.5 h, was concentrated and used without further purification: MS (ES) m/e 195 (M + H)+.
b) 1 ,1-dimethylethyl f1-(phenylmethyl)-1 ,2.3,6-tetrahvdro-4-pyridinyl1carbamate
NHBOC
NBn
To 1 ,1 -dimethylethyl 4-pyridinylcarbamate (4, 4g, 21.2 mmol) in MeCN (10 mL) was added benzyl chloride (4.8 mL, 41.4 mmol). The solution stirred for 12h at reflux, then cooled and concentrated. The resulting residue was washed with Et2O and used without further purification: MS (ES) m/e 229 (M + H)+.
The above salt (1g, 3.13 mmol) in EtOH (15 mL) was added dropwise to a solution of NaBH4 (470 mg, 12.5 mmol) in EtOH (15 mL) at 00C. The resulting solution warmed to 25°C over 2h, was concentrated and purified via column chromatography (silica, 0-1 % MeOH in DCM with 1 % NH4OH) affording the title compound (731 mg, 81%) as an orange oil: MS (ES) m/e 289 (M + H)+.
c) 1.1-dimethylethyl f3-(phenylmethyl)-3-azabicvclor4.1.Olhept-β-ylicarbamate
NHBOC
NBn Zn/Cu (1.1 g, 1.1 wt.%) [prepared according to the procedure of Shank and
Shechter J. Chem. Soc. 1959, 24, 1825.] and chloroiodomethane (506 μL, 6.94 mmol) in dry Et2O (7.0 mL) were heated to reflux over 2h. Upon cooling of the solution to 00C, 1 ,1 - dimethylethyl [1 -(phenylmethyl)-i ,2,3,6-tetrahydro-4-pyridinyl]carbamate (1.0 g, 3.47 mol) in dry THF (2.0 mL) was added dropwise. The solution slowly warmed to 25°C over 1 h and was heated to 400C for an additional 1 h. The solution was cooled and quenched with NH4OH and partitioned between H2O/CH2Cl2- The aqueous phase was back extracted several times with DCM. The combined organic fractions were dried (Na2SO4), concentrated, and purified by column chromatography (silica, 1 % MeOH in CH2CI2) affording the title compound (780 mg, 74%) as clear oil: MS (ES) m/e 303 (M + H)+. d) 1 ,1 -dimethylethyl 3-azabicvclof4.1.01hept-6-ylcarbamate
Figure imgf000037_0001
To 1 ,1-dimethylethyl [3-(phenylmethyl)-3-azabicyclo[4.1.0]hept-6-yl]carbamate (780 mg, 2.58 mmol) in EtOH (20 mL) was added 5% Pd/C (230 mg, 30 wt%) and the solution was hydrogenated under 50psi using a Parr Shaker for 12h. The resulting solution was filtered through Celite, concentrated and purified via column chromatography (silica, 4% MeOH in DCM with 1% NH4OH) affording the title compound (400 mg, 73%) as a clear oil: MS (ES) m/e 213 (M + H)+.
e) 1 ,1-dimethylethyl (3-(2-f6-(methyloxy)-1 ,5-naphthyridin-4-yllethyl)-3- azabicycloK 1.01hept-6-yl)carbamate
Figure imgf000037_0002
1 ,1-dimethylethyl 3-azabicyclo[4.1.0]hept-6-ylcarbamate (200 mg, 0.95 mmol) and 8-ethenyl-2-(methyloxy)-1 ,5-naphthyridine (177 mg, 0.95 mmol) in dry DMF (1.0 mL) were stirred at 900C for 12h. The solution was concentrated and the residue was purified via column chromatography (silica, 3% MeOH in DCM with 1 % NH4OH) affording the title compound (300 mg, 80%) as an orange oil: MS (ES) m/e 399 (M + H)+.
f) 6-(r(3-(2-r6-(methyloxy)-1 ,5-naphthyridin-4-yllethyl)-3-azabicvclor4.1.Olhept-6- yl)aminolmethyl)-2H-pyridor3.2-blH .41thiazin-3(4H)-one
Figure imgf000037_0003
To 1 ,1-dimethylethyl (3-{2-[6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[4.1.0]hept-6-yl)carbamate (300 mg, 0.754 mmol) in DCM (8.0 mL) at 00C was added dropwise an excess of 4M HCI in dioxane (1.1 mL, 4.52 mmol). The solution warmed to 25°C over 12h, was concentrated and used without further purification: MS (ES) m/e 299 (M + H)+.
To the above salt in a solution of DCM-EtOH (1 :1 , 4.0 mL) and DIPEA (1.3 mL, 7.54 mmol) at 25°C were added Na2SO4 (128 mg, 0.905 mmol) and 3-oxo-3,4-dihydro-2H- pyrido[3,2-£>][1 ,4]thiazine-6-carbaldehyde (147 mg, 0.754 mmol). After 12h, NaBH4 (34 mg, 0.905 mmol) was added and the solution stirred an additional 2h, then was concentrated and purified via column chromatography (silica, 1% MeOH in DCM with 1% NH4OH) affording the title compound (94 mg, 31%) as a yellow solid: MS (ES) m/e 477 (M + H)+; 1H NMR (CD3OD, 400 MHz) δ 8.48 (d, J = 4.6 Hz, 1 H), 8.03 (d, J = 9.1 Hz, 1 H), 7.51 (d, J = 7.8 Hz, 1 H), 7.42 (J + 4.8 Hz, 1 H), 7.05 (d, J = 9.1 Hz, 1 H), 6.86 (d, J = 7.8 Hz, 1 H), 3.95 (s, 3H), 3.68 (AB quartet, 2H), 3.20-3.25 (m, 4H), 2.83-2.88 (m, 1 H), 2.60- 2.62 (m, 2H), 2.56-2.58 (m, 1 H), 2.30-2.41 (m, 1 H), 2.00-2.19 (m, 1 H), 1.90-1.98 (m, 2H), 1.02-1.08 (m, 1 H), 0.63-0.67 (m, 1 H), 0.37-0.40 (m, 1 H).
Example 7
Preparation of 6-{r(3-{2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-yl]ethyl)-3- azabicvclo[4.1.01hept-6-yl)amino1methyl)-2/-/-pyridor3.2-t)lf1.4lthiazin-3(4H)-one
a) 1 , 1 -dimethylethyl (3-(2-f3-f luoro-6-(methyloxy)-1.5-naphthyridin-4-vnethyl)-3- azabicvclor4.1.0lhept-6-yl)carbamate
Figure imgf000038_0001
According to procedure of Example 6, except substituting 8-ethenyl-7-fluoro-2- (methyloxy)-i ,5-naphthyridine (194 mg, 0.948 mmol) for 8-ethenyl-2-(methyloxy)-1 ,5- naphthyridine, the title compound (129 mg, 33%) was obtained as an orange oil following purification by column chromatography (silica, 0.5% MeOH in DCM with 1% NH4OH): MS (ES) m/e 417 (M + H)+.
b) 6-(lϊ3-(2-r3-fluoro-6-(methyloxy)-1.5-naphthyridin-4-yllethyl)-3-azabicvclor4.1.OIhept-6- yl)amino1methyl)-2H-pyridor3.2-biri .41thiazin-3(4H)-one
Figure imgf000038_0002
According to procedure 3, the title compound (40 mg, 26%) was obtained as a light yellow solid following purification by column chromatography (silica, 0.5% MeOH in DCM with 0.5% NH4OH): MS (ES) m/e 495 (M + H)+; 1H NMR (CD3OD, 400 MHz) δ 8.51 (s, 1 H), 8.07 (d, J = 9.1 Hz, 1 H), 7.53 (d, J = 7.6 Hz, 1 H), 7.05 (d, J = 9.1 Hz, 1 H), 6.87 (d, J 7.8 Hz, 1 H), 3.99 (s, 3H), 3.69 (AB quartet, 2H), 3.29-3.30 (m, 1 H), 3.07-3.23 (m, 3H), 2.83 (dd, J = 6.3, 11.4 Hz, 1 H), 2.56-2.62 (m, 3H), 2.35-2.40 (m, 1 H)1 2.17-2.22 (m, 1 H), 1.88- 1.98 (m, 2H), 1.05-1.10 (m, 1 H), 0.63 (dd, J = 4.7, 9.7 Hz, 1 H), 0.32-0.39 (m, 1 H).
Examples
Figure imgf000039_0001
Figure imgf000040_0001
Example 8
Antimicrobial Activity Assay:
Whole-cell antimicrobial activity was determined by broth microdilution using the National Committee for Clinical Laboratory Standards (NCCLS) recommended procedure, Document M7-A6, "Methods for Dilution Susceptibility Tests for Bacteria that Grow Aerobically". The compounds were tested in serial two-fold dilutions ranging from 0.016 to 16 mcg/mL
Compounds were evaluated against a panel of Gram-positive organisms, including Staphylococcus aureus, Streptococcus pneumoniae, Streptococcus pyogenes, Enterococcus faecalis and Enterococcus faecium.
In addition, compounds were evaluated against a panel of Gram-negative strains including Haemophilus influenzae, Moraxella catarrhalis, Escherichia coli, Pseudomonas aeruginosa, Chlamydophila pneumoniae, Legionella pneumonaphila, Proteus mirabilis, Enterobacter cloacae, Enterobacter aerogenes, Klebsiella pneumoniae and Stenotrophomonas maltophilia.
The minimum inhibitory concentration (MIC) was determined as the lowest concentration of compound that inhibited visible growth. A mirror reader was used to assist in determining the MIC endpoint.
One skilled in the art would consider any compound with a MIC of less than 20 mg/mL to be a potential lead compound. For instance, each of the listed Examples (1 to 7), as identified in the present application, had a MIC <20 mg/ml against at least one of the organisms listed above.

Claims

What is claimed is:
1. A compound of formula (I)
Figure imgf000041_0001
(I) wherein:
Z1, Z3, and Z4 are independently N or CR ;
Z2, Z5, and Z6 are each CR1a;
R1 and R1a are independently at each occurrence hydrogen; cyano; halogen; hydroxy; (C-|_5)alkoxy unsubstituted or substituted by (C-j .β)alkoxy, hydroxy, amino, piperidyl, guanidino or amidino any of which is unsubstitued or N-substituted by one or two (C-|_ρ)alkyl, acyl, (Ci_6)alkylsulphonyl, CONH2, hydroxy, (C-j _6)alkylthio, heterocyclylthio, heterocyclyloxy, arylthio, aryloxy, acylthio, acyloxy or (C-| _6)alkylsulphonyloxy; (C-μρJalkyl; (Ci_5)alkylthio; trifluoromethyl; trifluoromethoxy; nitro; azido; acyl; acyloxy; acylthio; (C-|. 6)alkylsulphonyl; (C-i_6)alkylsulphoxide; arylsulphonyl; arylsulphoxide; or an amino, piperidyl, guanidino or amidino group unsubstituted or N-substituted by one or two (C-| .ρjalkyl, acyl or (Ci .βjalkylsulphonyl groups; or R1 and R1a of Z2 together form ethylenedioxy;
A is NR1b(C=O) or CR2R3;
W1, W2, and W3 are each CR4R5; R1b and R1d are independently at each occurrence hydrogen, trifluoromethyl; (C1. 6)alkyl; (C2.6)alkenyl; (d-6)alkoxycarbonyl; (Ci.6)alkylcarbonyl; (C2-6)alkenyloxycarbonyl; aryl; aralkyl; (C3.8)cycloalkyl; heterocyclyl; or heterocyclylalkyl;
R2, R3. R4. Ft5, and R6 are independently hydrogen; thiol; (Ci.6)alkylthio; halogen; trifluoromethyl; azido; (d.6)alkyl; (C2-6)alkenyl; (d.6)alkoxycarbonyl; (Ci.6)alkylcarbonyl; (C2. 6)alkenylcarbonyl; (C2.6)alkenyloxycarbonyl; aralkyl; aryl; heterocyclyl; heterocyclylalkyl; hydroxy; amino; NR1cR10'; (d^alkylsulphonyl; (C2-6)alkenylsulphonyl; or (d.6)aminosulphonyl wherein the amino group is optionally and independently substituted by hydrogen, (d.6)alkyl, (C2-6)alkenyl or aralkyl;
R1c and R1c are independently at each occurrence hydrogen; (d.6)alkyl; aralkyl; aryl; heterocyclyl; heterocyclylalkyl; or together with the nitrogen that they are attached torn an aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring (wherein said aziridine, azetidine, pyrrolidine, piperidine or hexamethyleneimine ring are optionally substiuted with from 1 to 3 substituents selected from halogen, hydroxy; cyano; nitro; (Ci- 6)alkyl; and aryl);
n1 is 0 or 1 ;
n and n" are independently and at each occurrence 0, 1 , or 2;
U is CH2; C(=O); or SO2;
R7 is a substituted or unsubstituted bicyclic carbocyclic or heterocyclic ring system (A):
Figure imgf000042_0001
containing up to four heteroatoms in each ring in which at least one of rings (a) and (b) is aromatic;
X is C or N when part of an aromatic ring or CR8 when part of a non aromatic ring; 2
X is N, NR9, O, S(O)n. , CO or CR8 when part of an aromatic or non-aromatic ring or may in addition be CR10Rn when part of a non aromatic ring;
3 5
X and X are independently N or C;
Y is a 0 to 4 atom linker group each atom of which is independently selected from N, NR9, O, S(O)n. , CO and CR8 when part of an aromatic or non-aromatic ring or may additionally be CRi0Rn when part of a non aromatic ring,
Y is a 2 to 6 atom linker group, each atom of Y being independently selected from N, NR9, O, S(O)n. , CO and CRu when part of an aromatic or non-aromatic ring or may additionally be CRi0Rn when part of a non aromatic ring;
R8, R10 and R11 are at each occurrence independently selected from: H; (C-μ 4)alkylthio; halo; (Ci_4)alkyl; (C2-4)alkenyl; hydroxy; hydroxy(C-i_4)alkyl; mercapto(C-|. 4)alkyl; (C-| _4)alkoxy; trifluoromethoxy; nitro; cyano; carboxy; amino or aminocarbonyl unsubstituted or substituted by (C-|_4)alkyl;
R9 is at each occurrence independently hydrogen; trifluoromethyl; (C-|_4)alkyl unsubstituted or substituted by hydroxy, carboxy, (C-| _4)alkoxy, (C-| .βjalkylthio, halo or trifluoromethyl; (C2-4)alkenyl; or aminocarbonyl wherein the amino group is optionally substituted with (C-|_4)alkyl; or a pharmaceutically acceptable salt or solvate thereof.
2. A compound according to claim 1 , wherein Z1 and Z4 are N; and
Z3 is CR1a.
3. A compound according to claim 1 , wherein: Z1 and Z3 are CR1a; and
Z4 is N.
4. A compound according to claim 1 , wherein: R1 is OCH3.
5. A compound according to claim 1 , wherein R is at each occurrence independently hydrogen; halogen; or cyano.
6. A compound according to claim 2, wherein: R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano; and R1 is OCH3.
7. A compound according to claim 1 , wherein: A is CH2; and n of (CH2)n is 1.
8. A compound according to claim 1 , wherein: n1 is 0.
9. A compound according to claim 1 , wherein: n1 is 1.
10. A compound accoring to claim 1 , wherein: R1d is hydrogen; and
U is CH2.
11. A compound according to claim 1 , wherein: R1d is hydrogen; and
U is C(=O).
12. A compound acording to claim 1 , wherein R7 is: 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4/-/-Pyrido[3,2-£>][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3-c]pyridin-5-yl; 7-Chloro-4/-/-pyrido[3,2-t»]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]-pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4A7-pyrido[3,2-/?][1 ,4]thiazin-3-oxo-6-yl; 3-Oxa-1 -thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl; 6-Fluoro-2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7-Fluoro-4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl.
13. A compound according to claim 1 , wherein R7 is: 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; or 7-Chloro-4H-pyrido[3,2-b]oxazin-3-oxo-6-yl.
14. A compound according to claim 2, wherein: R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano;
R1 is OCH3;
A is CH2; n of (CH2)n is 1 ; and n' is 0.
15. A compound according to claim 14, wherein:
R4, R5, and R6 are independently hydrogen; halogen; (d^)alkyl; or hydroxy; R1d is hydrogen; and U is CH2 or (C=O).
16. A compound according to claim 15, wherein R7 is: 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4/-/-Pyrido[3,2-(b][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3-c]pyridin-5-yl; 7-Chloro-4/-/-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]-pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4H-pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 3-Oxa-1 -thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl; 6-Fluoro-2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7-Fluoro-4/-/-benzo[1,4]thiazin-3-oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3-dihydiO-benzo[1 ,4]dioxin-6-yl.
17. A compound according to claim 16, wherein R7 is: - 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4/-/-Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; or 7-Chloro-4/-/-pyrido[3,2-£>]oxazin-3-oxo-6-yl.
18. A compound according to claim 2, wherein: R1a of Z2, Z3, and Z5 are each hydrogen; R1a of Z6 is fluorine or cyano;
A is CH2; n of (CH2)n is 1 ; and n1 is 1.
19. A compound according to claim 18, wherein:
R4, R5, and R6 are independently hydrogen; halogen; (d-6)alkyl; or hydroxy; R1d is hydrogen; and U is CH2 or (C=O).
20. A compound according to claim 19, wherein R7 is: 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-benzo[1 ,4]dioxin-6-yl; 4/-/-Pyrido[3,2-b][1 ,4]oxazin-3-oxo-6-yl; 4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 2,3-Dihydro-furo[2,3-c]pyridin-5-yl; 7-Chloro-4H-pyrido[3,2-b]oxazin-3-oxo-6-yl; 2,3-Dihydro-[1 ,4]dioxino[2,3-c]-pyridin-6-yl; 2,3-Dihydro-benzofuran-7-carbonitrile-5-yl; 7-Methyl-4H-pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 3-Oxa-1 -thia-5-aza-indan-5-yl; 5-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl; 6-Fluoro-2,3-dihydro[1 ,4]dioxin-7-yl; 2,3-Dihydro-benzofuran-5-yl; 7-Fluoro-4H-benzo[1 ,4]thiazin-3-oxo-6-yl; 4H-Benzo[1 ,4]thiazin-3-oxo-6-yl; or 8-Methyl-2,3-dihydro-benzo[1 ,4]dioxin-6-yl.
21. A compound according to claim 20, wherein R7 is : 4H-Pyrido[3,2-b][1 ,4]thiazin-3-oxo-6-yl; 4H-Pyrido[3,2-/?][1 ,4]oxazin-3-oxo-6-yl; or 7-Chloro-4/-/-pyrido[3,2-_9]oxazin-3-oxo-6-yl.
22. A compound according to claim 1 , wherein the compound is:
a) 6-{[(3-{2-[6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3-azabicyclo[3.1.0]hex-6- yl)amino]methyl}-2/-/-pyrido[3,2-b][1 ,4]thiazin-3(4H)-one;
b) 6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hex-6-yl)amino]methyl}-2H-pyrido[3,2-b][1 ,4]thiazin-3(4/-/)-one;
c) 6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hex-6-yl)amino]methyl}-2H-pyrido[3,2-fc»][1 ,4]oxazin-3(4/-/)-one;
d) 7-chloro-6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hex-6-yl)amino]methyl}-2/-/-pyrido[3,2-b][1 ,4]oxazin-3(4/-/)-one;
e) Λ/-(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[3.1.0]hex-6-yl)-3-oxo-3,4-dihydro-2H-pyrido[3,2-i)][1 ,4]thiazine-6-carboxamide;
f) 6-{[((1 R,6fl)-3-{2-[6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[4.1.0]hept-6-yl)amino]methyl}-2H-pyrido[3,2-b][1 ,4]thiazin-3(4H)-one; or
g) 6-{[(3-{2-[3-fluoro-6-(methyloxy)-1 ,5-naphthyridin-4-yl]ethyl}-3- azabicyclo[4.1.0]hept-6-yl)amino]methyl}-2H-pyrido[3,2-£>][1 ,4]thiazin-3(4H)-one; or
a pharmaceutically acceptable salt or solvate thereof.
23. A process for the preparation of intermediates of formula (IV) useful in the preparation of compounds of formula (I), which process comprises: (a) reacting a compound of formula (II) with a compound of formula (III) to give a useful intermediate having formula (IV):
Figure imgf000048_0001
wherein:
Z1, Z2, Z3, Z4, Z5, Z6, n, n1, W1, W2, W3, R1, R2, R3, R6, and R1d are as defined in claim 1 ; and
X1 is CH=CH2 or A-(CH2)n-L;
A is CR2R3;
L is a leaving group; and
P is hydrogen or an amine protecting group.
24. A process for the preparation of a compound of claim 1 , which process comprises:
(a) reacting a compound of formula (II) with a compound of formula (III) to give a compound of formula (IV);
(b) reacting the compound of formula (IV) with a compound of formula (V);
(c) removing P (where P is not hydrogen) to give a compound of formula (I);
(d) optionally converting to a pharmaceutically acceptable salt or solvate, thereof;
or
(a) reacting a compound of formula (II) with a compound of formula (III) to give a compound of formula (IV);
(b) removing P (where P is not hydrogen); and
(c) reacting the product of step (b) with a compound of formula (V) to give a compound of formula (I);
(d) optionally converting to a pharmaceutically acceptable salt or solvate, thereof;
Figure imgf000049_0001
wherein:
Z1, Z2, Z3, Z4, Z5, Z6, n, n\ W1, W2, W3, R1, R2, R3, R6, R7, U and R1d are as defined in claim 1 ;
X' is CH=CH2 or A-(CH2Jn-L;
A is CR2R3;
L and L' are leaving groups; and
P is hydrogen or an amine protecting group.
25. A pharmaceutical composition comprising a compound according to claim 1 and a pharmaceutically acceptable carrier.
26. A method of treating bacterial infections in mammals which comprises administering to a mammal in need thereof an effective amount of a compound according to claim 1.
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