WO2005116011A1 - A novel stereoselective synthesis of benzimidazole sulfoxides - Google Patents

A novel stereoselective synthesis of benzimidazole sulfoxides Download PDF

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WO2005116011A1
WO2005116011A1 PCT/IN2004/000143 IN2004000143W WO2005116011A1 WO 2005116011 A1 WO2005116011 A1 WO 2005116011A1 IN 2004000143 W IN2004000143 W IN 2004000143W WO 2005116011 A1 WO2005116011 A1 WO 2005116011A1
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Prior art keywords
formula
solvent
salt
methoxy
acid
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PCT/IN2004/000143
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French (fr)
Inventor
Bandi Parthasaradhi Reddy
Kura Rathnakar Reddy
Rapolu Raji Reddy
Dasari Muralidhara Reddy
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Hetero Drugs Limited
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Priority to PCT/IN2004/000143 priority Critical patent/WO2005116011A1/en
Priority to DK04735319.8T priority patent/DK1748998T3/en
Priority to AT04735319T priority patent/ATE456566T1/en
Priority to US10/503,846 priority patent/US7365206B2/en
Priority to DE602004025386T priority patent/DE602004025386D1/en
Priority to PT04735319T priority patent/PT1748998E/en
Priority to EP04735319A priority patent/EP1748998B1/en
Priority to ES04735319T priority patent/ES2338556T3/en
Publication of WO2005116011A1 publication Critical patent/WO2005116011A1/en
Priority to US11/865,295 priority patent/US7928241B2/en
Priority to US11/865,312 priority patent/US8173817B2/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

Definitions

  • the present invention provides a stereoselective synthesis for preparing a benzimidazoie sulfoxide of formula I or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
  • Example 1 5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylthio]-1H- benzimidazole (15 gm) was dissolved in methylene chloride (150 ml) and N,N- diisopropylethylamine (9.0 gm) was added to the solution. The solution was cooled to 0°C - 5°C.
  • Example 7 Potassium salt of (S)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl) methylsulfinyrj-1 H-benzimidazole (Esomeprazole potassium) (6.2 gm) was dissolved in water ( 80 ml). To this solution, was added magnesium chloride solution (1.8 gm in 50 ml water), and then the contents were stirred for 1 hour at 25°C. The solid precipitated was filtered, washed with water and dried under vacuum for 12 hours at 40°C to obtain 4.5 gm of esomeprazole magnessium df ⁇ ydrate (enantiomeric excess: 99.5%).

Abstract

The present invention relates to a process for stereoselective synthesis of substituted sulfoxides either as a single enantiomer or in an enantiomerically enriched form. Thus, 5-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]thio]-1H-benzimidazole is reacted with (R)-camphorsulfonyl chloride to form a mixture of 1-(R)-camphorsulfonyl-5-(and 6-)methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylthio]-1H-benzimidazole, oxidized to obtain a diastereomeric excess of 1-(R)-camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1H-benzimidazole over 1-(R)-camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(R)-sulfinyl]-1H-benzimidazole, the diastereomers are separated by fractional crystallization and the separated 1-(R)-camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1H-benzimidazole is deprotected to give esomeprazole.

Description

A NOVEL STEREOSELECTIVE SYNTHESIS OF BENZIMIDAZOLE SULFOXIDES
FIELD OF THE INVENTION The present invention relates to a process for stereoselective synthesis of benzimidazoie sulfoxides either as a single enantiomer or in an enantiomerically enriched form. BACKGROUND OF THE INVENTION Substiituted 2-(2-pyridinylmethylsulfinyl)-1 H-benzimidazoles such as for example omeprazole, pantoprazole, lansoprazole and rabeprazole including their stereoisomers are inhibitors of gastric acid secretion. Omeprazole, chemically 5-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]- 1 H-benzimidazole is for instant disclosed in EP 5129. Some compounds useful as prodrugs of proton pump inhibitors are disclosed in US 6,559,167. The alkaline salts of (S)-enantiomer of omeprazole (esomeprazole), the pharmaceutical preparations of these salts and the method of treatment of gastric acid-related diseases using them are disclosed in US 4,738,974, US 5,877, 192 and US 5,714,504. The patents US 4,738,974, US 5,877,192 and US 5,714,504 are incorporated herein by reference. These compounds and structurally related compounds have a stereogenic center at sulfur and therefore exist as two optical isomers. The resolution processes of racemates of these compounds were for example disclosed in DE 4035455 and WO 94/27988. According to these processes chiral ether such as fenchyloxymethyl or chiral acyloxy methyl group such as mandeloyl- is introduced into the 1 -position of benzimidazoie ring of racemic sulfoxide compound to obtain a diastereomeric mixture, diastereomers are then separated and desired isomer is liberated from a separated diastereomer. The process requires either the preparation of fenchyloxymethyl chloride and then reaction with the racemic compound; or introduction of chloromethyl group on 1- position of benzimidazoie ring, followed by reaction with the chiral auxiliary. We find that these intermediates are difficult to prepare and involv.e in pn.any steps. The resolution of sulfoxide compounds including racemic omeprazole were described in WO 2004/002982. The method requires expensive reagents like titanium compounds, two chiral reagents namely diethyl-D-tartarate and L- Mandelic acid. Enantioselective synthesis is described for example in Euro. J. Biochem. 166 (1987) 453 and US 5,948,789. Disadvantages of these methods are that strict control of conditions is to be maintained and strict control of quantities of oxidizing agents is required for avoiding oxidation of desired sulfoxide to sulfone impurity. Moreover, these methods require expensive reagents like titanium isoproxide and diethyl-D-tartarate. The process for the preparation of racemic benzimidazoie sulfoxides such as omeprazole, useful as starting materials for preparing enantiomehcally pure benzimidazoie sulfoxides, from their corresponding sulfides involves a problem of over oxidation to form sulfone impurities. PCT Application No. PCT/IN04/00118 describes the resolution method for racemic benzimidazoie sulfoxides. We have discovered a novel process for preparing benzimidazoie sulfoxides either as a single enantiomer or in an enantiomerically enriched form using less expensive reagents. The novel method provides a commercially viable stereoselective synthesis of benzimidazoie sulfoxides. The novel process provides an excess amount of the desired enantiomer of benzimidazoie sulfoxides over the undesired enantiomer. This results in the improved overall yield of optically pure or optically enriched benzimidazoie sulfoxides. Some of the intermediates of the process are novel and also the part of the invention. SUMMARY OF THE INVENTION The present invention provides a stereoselective synthesis for preparing a benzimidazoie sulfoxide of formula I or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
Figure imgf000003_0001
Wherein R is
Figure imgf000004_0001
X is
Figure imgf000004_0002
and Ri - R4 are the same or different and selected from hydrogen, alkyl, alkoxy, halogen, halo-alkoxy, alkylcarbonyl, alkoxycarbonyl, oxazolyl, trifluroalkyl, or adjacent groups R^ - R form ring structures which may be further substituted; wherein R5 and R7 are same or different and selected from hydrogen, alkyl, alkylthio, alkoxy optionally substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, phenylalkyl and phenylalkoxy; R6 is selected from hydrogen, alkyl, alkylthio, alkoxy optionally substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, nitro, phenylalkyl and phenylalkoxy; R8 is hydrqgen or forms an alkylene chain together with R7.and . R9 and R10 are same or different and selected from hydrogen, halogen and alkyl; which comprises: a) reacting a benzimidazoie sulfide of formula II, or a salt thereof:
Figure imgf000005_0001
wherein R, X and R-, - R4 are as defined for formula I; with a chiral compound of formula III :
Rc-Z-Y
wherein Rc is a chiral moiety having at least one asymmetric center and at least one asymmetric center in the chiral moiety can have either R or S configuration; Z is O o O II II — S — — s- or -C— II o and Y is a leaving group to provide a compound of formula IV:
Figure imgf000005_0002
wherein R, X and Ri - R4 are as defined for formula I; and Rc and Z are as defined for formula III; b) oxidizing the compound of formula IV to give a diastereomeric excess of compound of formula V:
Figure imgf000006_0001
wherein R, X, Rc, R1 - R and Z are as defined for formula IV and star (*) refers to excess of one configuration at the sulfur atom of the sulfoxide group over the opposite configuration; c) if required, separating the diastereomers of formula V; and d) deprotecting the product of step (b); or separated diastereomers of step (c) with an acid or base to provide a single enantiomer or enantiomerically enriched compound of formula I and optionally converting the enantiomer formed to the salt. In the above definitions alkyl groups, alkoxy groups and moieties thereof may be branched or straight Ci - C9-chains or comprise cyclic alkyl groups, for example cyclicalkylalkyl. Some of the intermediates of the process are novel and also the part of the invention. DETAILED DESCRIPTION OF THE INVENTION
The present invention provides a stereoselective synthesis for preparing a benzimidazoie sulfoxide of formula I or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
Figure imgf000006_0002
Wherein R is
Figure imgf000007_0001
X is
Figure imgf000007_0002
and R-, - R4 are the same or different and selected from hydrogen, alkyl, alkoxy, halogen, halo-alkoxy, alkylcarbonyl, alkoxycarbonyl, oxazolyl, trifluroalkyl, or adjacent groups Ri - R4form ring structures which may be further substituted; i'ό wherein R5 and R7 are same or different and selected from hydrogen, alkyl, alkylthio, alkoxy optionally substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, phenylalkyl and phenylalkoxy; R6 is selected from hydrogen, alkyl, alkylthio, alkoxy optionally 15 substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, nitro, phenylalkyl and phenylalkoxy; R8 is hydrogen or forms an alkylene chain together with R7 and R9 and R10 are same or different and selected from hydrogen, halogen and alkyl. 0 Except otherwise states, alkyl groups, alkoxy groups and moieties ( thereof may be branched or straight Ci - C9-chains or comprise cyclic alkyl groups, for example cyclicalkylalkyl. The star (*) refers to excess of one configuration at the sulfur atom of the sulfoxide group over the other configuration. Preferably, the sulfoxides prepared by the novel method are sulfoxides of formula I' or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
Figure imgf000008_0001
Wherein R is
Figure imgf000008_0002
R6 is selected from hydrogen, alkyl, alkylthio, alkoxy optionally substituted by
10 fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, phenylalkyl and phenylalkoxy; and R1-R5, R7-Rιo and X are as defined for formula I. More preferably the sulfoxides prepared by the novel process are sulfoxides of any of the formulas l(i) to l(vi) or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
1.5
Figure imgf000008_0003
Figure imgf000009_0001
The compounds defined by the formulas I, I' and l(i-vi) may be converted to pharmaceutically acceptable salts by conventional methods. Most preferably the sulfoxide prepared by the novel process is sulfoxide of the formula l(i) or a salt thereof either as a single enantiomer or in an enantiomerically enriched form. According to the present invention initially a benzimidazoie sulfide of formula II or a salt thereof:
Figure imgf000009_0002
is reacted with a chiral compound of formula
Rc-Z-Y
to provide a compound of formula IV:
Figure imgf000010_0001
In the formulas ll-IV, R, X, and Ri - R4 have the same meaning as defined for formula I; RG is a chiral moiety having at least one asymmetric center and at least one asymmetric center in the chiral moiety can have either R or S configuration; Z is
Figure imgf000010_0002
and Y is a leaving group such as halogen, hydroxy or reactive esterified hydroxy. The salts of the compounds of formula II used in the reaction may be inorganic or organic salts. The preferable inorganic salts are alkali salts or alkaline earth metal salts. Preferred alkali metal salt of the compounds of formula II is lithium, sodium or potassium, more preferred being sodium or potassium metal salt. Preferred alkaline earth metal salt of the compounds of formula II is calcium or magnesium, more preferred being magnesium metal salt. The preferred organic salts of the compounds of formula II are organic ammonium salts, more preferred being tert-butylammonium salt, tetrabutylammonium salt and guanidinium salt. The preferred Z is sulfonyl group:
Figure imgf000010_0003
Rc may or may not have aryl substitutions such as phenyl or hetero aryl substitutions such as pyridine on its chiral moiety. Preferably, Rc-Z- is selected from (S) or (R) -camphor sulfonyl, (S)- or (R)-glycidylsulfonyl-, D- or L- mandeloyl, a stereo isomeric 1-(ethoxycarbonyl)-3-phenylpropyl]alanyl, (D) or (L)-phenyl alanyl and (D) or (L)-alanyl. Preferably, reactive esterified hydroxy group is. acetoxy or trifluoroacetoxy. Halogen represents F, CI, Br or I. Preferably, Y is halogen, more preferably CI or Br, still more preferably CI. Preferably, the reaction between the benzimidazoie sulfide of formula II and the optically active compound of formula III is carried out in a. solvent. Suitable solvents that can be used are esters such as ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl . methyl acetate and ethyl formate; alcohols such as methanol, ethanol and isopropyl alcohol; acetonitrile; tetrahydrofuran; dimethylformamide; dimethylsulfoxide; dioxane; aromatic hydrocarbons such as benzene, toluene, xylene, etc.; halogenated hydrocarbons such as methylene chloride, chloroform, carbontetrachloride, ethylene dichloride, etc.; ketones such as acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone etc.; ethers such as tert-butyl methyl ether, diethyl ether; diethyl carbonate and a mixture thereof. Preferable solvents are selected from halogenated hydrocarbon solvents and aromatic hydrocarbon solvents, still more preferred solvents are methylene chloride, ethylenedichloride, toluene, benzene and xylene. Preferably the reaction is carried out in the presence of a base such as N,N-diisopropylethylamine, triethyl amine or sodium carbonate. The compounds of a formula IV are novel and constitutes another aspect of the invention. The compound of formula IV is oxidized to give diastereomeric excess of sulfoxide of formula V:
Figure imgf000011_0001
wherein R, X, Rc, R-i - R and Z are as defined for formula IV. By using a suitable chiral auxiliary Rc-Z-Y (formula III) for preparing the compound of formula IV, the desired diastereomer. can be obtained in excess over the undesired diastereomers. Any oxidizing agents that are known for oxidizing sulfide to sulfoxide can be used. The preferred oxidizing agents are nitric acid, hydrogen peroxide, peracids, peresters, ozone, dinitrogentetraoxide, iodosobenzene, N- halosuccinimide, 1-chlorobenzotriazole, t-butylhypochlorite, sodium hypochlorite, diazobicyclo-[2,2,2]-octane bromine complex, sodium metaperiodate, selenium dioxide, manganese dioxide, chromic acid, cericammonium nitrate, bromine, chlorine, and sulfuryl chloride. More preferred oxidizing agents are peracids such as peracetic acid and m-chloro perbenzoic acid; hydrogen peroxide, sodium hypochlorite and sodium metaperiodate. The oxidation can also be performed with the oxidizing agent in the presence of a catalyst such as vanadium acetyl acetonate. Oxidation is carried out in a solvent or a mixture of solvents. The preferred solvents are esters such as ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate and ethyl formate; carboxylic acid solvents such as acetic acid; alcohols such as methanol, ethanol and isopropyl alcohol; acetonitrile; tetrahydrofuran; dimethylformamide; dimethylsulfoxide; dioxane; aromatic hydrocarbons such as benzene, toluene, xylene, etc.; halogenated hydrocarbons such as methylene chloride, chloroform, carbontetrachloride, ethylene dichloride, etc.; ketones such as acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone etc.; ethers such as tert-butyl methyl ether, diethyl ether; diethyl carbonate and a mixture thereof. More preferred solvents are selected from halogenated hydrocarbon solvents, carboxylic acid solvents and aromatic hydrocarbon sovents, still more preferred solvents are methylenedichloride, ethylenedichloride, acetic acid, toluene, benzene and xylene. The diastereomeric excess refers to formation of a diastereomer having one configuration at sulfur of sulfoxide in excess over that having the opposite configuration. Preferably, one diastereomer is formed in above about 60% of the mixture of diastereomers over the other and more preferably, above about 80% of the mixture of diastereomers. The compounds of formula V formed may be isolated from the reaction medium and then used in the next step; or used directly in the next step. The compounds of formula V formed above can be separated and the separated diastereomers are deprotected; or used directly in the deprotection step. The separation of diastereomers may be required to obtain stereomers with desired optically purity. It is well known that diastereomers differ in their properties such as solubility and they can be separated based on the differences in their properties. The separation of the diastereomers can be performed using the methods known to the person skilled in the art. These methods include chromatographic techniques and fractional crystallization, preferable method being fractional crystallization. Preferably, a solution of the diastereomeric mixture is subjected to fractional crystallization. The solution of the diastereomeric mixture may be a solution of the reaction mixture obtained as above or a solution prepared by dissolving the isolated diastereomeric mixture in a solvent. Any solvent may be used so long as it can be used for the separation. The preferred solvent is selected from alcohols such as methanol, ethanol and . isopropyl alcohol, propanol, tert-butylalcohol, n-butanol; ketones such as acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone; esters such as ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate and ethyl formate; acetonitrile; tetrahydrofuran; dimethylformamide; dimethylsulfoxide; dioxane; diethyl carbonate and a mixture thereof. Water may also be associated with the above solvents. Preferable solvents are alcohol and ketone solvents, still more preferred solvents are alcohol solvents such as isopropyl alcohol and ethanol. Fractional crystallization of preferentially one diastereomer from the solution of mixture of diastereomers can be performed by conventional methods such as cooling, partial removal of solvents, using contrasolvent, seeding or a combination thereof. Fractional crystallization can be repeated until the desired chiral purity is obtained. But, usually one or two crystallizations may be sufficient. The separated diastereomer of formula V or the compound of formula V without subjecting for separation is then deprotected to provide sulfoxide of formula I either as a single enantiomer or in an enantiomerically enriched form. The deprotection can be applied to the separeated diastereomers to get respective enantiomers. The single enantiomer or the enantiomerically enriched enantiomer can be isolated from the reaction mixture or it can be isolated as a salt. The salts of the sulfoxide enantiomers can be prepared by conventional means. Optionally the enantiomers or salts thereof can be converted into pharmaceutically acceptable salts by conventional methods. The deprotection can be performed by using an acid or a base. The selection of the acid or base is not critical. The acid can be an organic or inorganic. Acids such as carboxylic acids, e.g. acetic acid, formic acid; sulfonic acids, e.g. methane sulfonic acid; mineral acids such as phosphoric acid can be used. The deprotection is preferably carried out with a base. The base can be an organic or inorganic. Preferable organic base is an amine. The amine may be primary, secondary or tertiary amine. The more preferred amine is triethyl amine or N,N-diisopropylethylamine. The preferable inorganic bases are hydroxides, carbonates, . bicarbonates, alkoxides and oxides of alkali or alkaline earth metals. The preferred alkali metal compounds are those of lithium, sodium and potassium, ' more preferred being those of sodium and potassium. The preferred alkaline earth metal compounds are those of calcium and magnesium more preferred being those of magnesium. Some example of these bases are sodium hydroxide, potassium hydroxide, magnesium hydroxide, magnesium oxide, sodium carbonate, potassium carbonate, sodium bicarbonate, potassium bicarbonate, sodium tert.butoxide and potassium tert.butoxide. The more preferred bases are hydroxides of sodium and potassium. The deprotection may be carried out by contacting the separated diastereomer or a salt thereof with the base preferably in the presence of a solvent. Suitable solvents that can be used in the deprotection are esters such as ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate and ethyl formate; alcohols such as methanol, ethanol and isopropyl alcohol; acetonitrile; tetrahydrofuran; dimethylformamide; dimethylsulfoxide; dioxane; aromatic hydrocarbons such as benzene, toluene, xylene, etc.; halogenated hydrocarbons such as methylene chloride, chloroform, carbontetrachloride, ethylene dichloride, etc.; ketones such as acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone etc.; ethers such as tert-butyl methyl ether, diethyl ether; diethyl carbonate and a mixture thereof. Preferable solvents are alcohol and ketone solvents, still more preferred solvents are alcohol solvents such as methanol, isopropyl alcohol and ethanol. The separation and deprotection methods of benzimidazoie sulfoxides are described in application No. PCT/IN04/00118, which is herein incorporated by reference. The enantiomers of compounds of formula I are either inhibitors of gastric acid secretion or intermediates for preparing them. These intermediates can be converted to the members of inhibitors of gastric acid secretion. For instant if R6 of an enantiomer of the compound of formula I is nitro group then nitro can be replaced by methoxy group using sodium methoxide to obtain another member of the formula I. Similarly if R of an enantiomer of the compound of formula I is
Figure imgf000015_0001
the N-oxide group can be reduced to pyridine compound by known methods to obtain another member of formula I. The compounds of formula V as diastereomeric mixture or as individual diastereomers including their salts are novel and are also part of the invention. (S)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylsulfinyl]1-H- benzimidazole ((S)-Omeprazole or Esomeprazole) or a salt thereof is the most preferred compound of the formula I. The preferred process for preparing esomeprazole or the salt can be shown in the scheme: Scheme:
H.c ^soac,
Figure imgf000016_0002
Figure imgf000016_0001
5-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl) (R)-Camphor sulfonyl chloride methyl-thio]-1 H-benzimidazole
Organic Base Methylene chloride
Figure imgf000016_0003
1-(R)-camphorsulfonyI-5-methoxy-2-[(3,5-dimethyl- 1-(R)-camphorsulfonyl-6-methoxy-2-[(3,5-dimethyl- 4-methoxy-2-pyridyl)methyl-thio]-1 H-benzimidazole 4-methoxy-2-pyridyl)methyl-thio]-1 H-benzimidazole
Oxidation
Figure imgf000016_0004
1-(R)-camphorsulfonyl-5-methoxy-2-[(3,5-dimethyl-4 1-(R)-camphorsulfonyl-6-methoxy-2-[(3,5-dimethyl- -methoxy-2-pyridyl)methyl-(R/S)-sulfinyl]-1H- 4-methoxy-2-pyridyl)methyl-(R/S)-sulfinyl]-1H- benzimidazole benzimidazole Fractional crystallization
(mother liquor) (solid)
Figure imgf000017_0001
1-(R)-camphorsulfonyl-5-met oxy- 1-(R)-camphorsulfonyl-6-methoxy- 1-(R)-camphorsulfonyl-5-methoxy- 1-(R)-camphorsulfonyl-6-methoxy- 2-[(3,5-dimethyl-4-methoxy-2- 2-[(3,5-dimethyl-4-methoxy-2- 2-[(3,5-dimethyl-4-methoxy-2- 2-[(3,5-dimethyl-4-methoxy-2- pyridyl)methyl-(S)-sulfinyl]-1H- pyridyl)methyl-(S)-sulfinyl]-1H- pyridyl)met yl-(R)-sulfinyl]-1H- pyridyl)methyl-(R)-sulfinyl]-1H- benzimidazolβ benzimidazolβ benzimidazole benzimidazole
Base Base
Figure imgf000017_0002
Esomeprazole R-omeprazole
Figure imgf000017_0003
Metal salt of esomeprazole Metal salt of R-omeprazole
The diastereomers formed by reaction between 5-Methoxy-2-[(3,5- dimethyl-4-methoxy-2-pyridyl)methylthio]1 -H-benzimidazole and (R)-camphor sulfonyl chloride results in the formation of a mixture of 1-(R)-camphor sulfonyl- (5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylthio]-1 H-benzimidazole, which is then oxidized to give a diastereomeric mixture of 1-(R)- camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl) 10 methyl-(R/S)-sulfinyl]-1 H-benzimidazole. The diastereomeric compounds with 'S'-configu ration at sulfur of sulfoxide group (i.e., 1-(R)-camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1H- benzimidazole) are formed in excess over the diastereomeric compounds with "R'-configuration at sulfur of sulfoxide group (i.e., 1-(R)-camphorsulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(R)-sulfinyl]-1 H- benzimidazoie). From the mixture of 5- and 6- methoxy-benzimidazoles thus obtained, those with one configuration at the sulfur atom of sulfoxide group are separated by fractional crystallization from those with the opposite configuration, followed by deprotection to give esomeprazole and R-omeprazole separately. The formation of such 5- and 6- substituted benzimidazoles are common for example as mentioned in US 5,714,504 and where applicable such a benzimidazoie compounds of formula IV and diastereomers of the benzimidazoie compounds of formula V; and the preparation of such compounds are also part of the invention. Such a mixture of substituted benzimidazoie compounds usually results from the presence of tautomeric forms of benzimidazoie ring and they result when at least one of R to R4 is different from any of the rest of them provided if R-i and R4 are same, R2 and R3 are different; or if R2 and R3 are same, R^ and R4 are different. Even though these structures are not shown for the formulas IV and V for the sake of clarity, they are implied and also the part of the invention. The sequence of reactions and structures for these compounds can be shown as:
Scheme:
Figure imgf000019_0001
III
Figure imgf000019_0002
Oxidation
Figure imgf000019_0003
Figure imgf000019_0004
Metal salts Metal salts The compounds of formulas IVa, IVb and Via to Vld may be separated in to substantially pure compounds from their respective fractions by suitable means such as chromatographic techniques and / or fractional crystallization. For example, the individual isomers can be obtained by repeated crystallizations of alcoholic or ketonic solution or a mixture thereof from the mixture of IVa and IVb; Via and Vlb; or Vic and Vld. Any of the compounds of formulas IVa, IVb and Via to Vld in substantially pure form are novel and constitutes another aspect of the invention. The individual compounds of formula IVa and IVb may also be used for preparing the compounds of formula I as a single enantiomer or in an enantiomerically enriched form by treating these compounds essentially the same manner as described for formula IV. The individual isomers of the formula Via to Vld may also be used for preparing the compounds of formula I as a single enantiomer or in an enantiomerically enriched form by treating these isomers essentially the same manner as described for formula V. Substantially pure refers to purity of the compound more than 85% of total of all the four isomers (i.e., Via to Vld), more preferably above 95% of total of all the four isomers and still more preferably above 98% of total of all the four isomers. The following examples are given for the purpose of illustrating the present invention and should not be considered as limitations on the scope or spirit of the invention.
Example 1 5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylthio]-1H- benzimidazole (15 gm) was dissolved in methylene chloride (150 ml) and N,N- diisopropylethylamine (9.0 gm) was added to the solution. The solution was cooled to 0°C - 5°C. (R)-Camphor sulfonyl chloride (14.0 gm) dissolved in 25 ml of methylene chloride was added slowly for one hour at 0°C - 5°C. The reaction mixture was maintained at 0°C - 5°C for 3 hours. The pH was adjusted to 6.0- 6.5 with acetic acid, then ice-cooled water (60 ml) was added. The layers were separated. The organic layer was washed with 10% aqueous sodium chloride. The organic layer was distilled under reduced pressure to obtain a residue containing the mixture of 1-(R)-camphor sulfonyl-5-methoxy-2-[(3,5-dimethyl-4- methoxy-2-pyridyl)methylthio]-1 H-benzimidazole and 1-(R)-camphor sulfonyl-6- methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylthio]-1 H-benzimidazole (19.8 gm).
Example 2 The residue (19.8 gm) obtained as in example 1 was mixed with methylene chloride (200 ml) at 30°C - 35°C, cooled to -5°C and then the solution of m-chloro perbenzoic acid (8.0 gm) in methylene chloride (80 ml) was added drop wise for 30 minutes at -5°C. The contents were stirred for 3 hours at -5°C, then the reaction mass was filtered and washed with 5% NaHCO3 (80 ml). The organic layer was dried and distilled to give the residue containing the diastereomeric mixture of 1-(R)-camphor sulfonyl-(5- and 6-)-methoxy-2T[(3,5- dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1 H-benzimidazole and 1 -(R)- camphor sulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl) methyl-(R)-sulfinyl]-1 H-benzimidazole (18.0 gm) (the ratio of diastereomeric mixture of 1-(R)-camphor sulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4- methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1 H-benzimidazole and 1-(R)-camphor sulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(R)- sulfinyl]-1 H-benzimidazole was 4.4 : 1).
Example 3 The residue (18.0 gm) obtained as in example 2 was stirred with isopropyl alcohol (50 ml) for 2 hours at 25°C and then refluxed for 1 hour. The solution was cooled to 25°C and maintained for 3 hours. The solid obtained was collected by filtration. The solid was stirred in methanol (80 ml) for 30 min and filtered to obtain a mixture of 1-(R)-camphor sulfonyl-5-methoxy-2-[(3,5- dimethyl-4-methoxy-2-pyridyl)methyl-(R)-sulfinyl]-1 H-benzimidazole and 1-(R)- camphor sulfonyl-6-methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(R)- sulfinyl]-1 H-benzimidazole as solid (3.5 gm). Example 4 Methanol (50 ml) was added to the product (3.5 gm) obtained as in example 2 and stirred for 30 min at 25°C, then sodium hydroxide solution (1 gm in 5 ml water) was added slowly for 10 min. The contents were stirred for 3 hours at 25°C and then distilled to obtain a residue. To the residue was added water (25 ml), the pH was adjusted to 6.8 with acetic acid and the product was extracted with methylene chloride (3 X 50 ml). The layers were separated. The methylene chloride layer was washed with 5% aq. sodium chloride (25 ml), dried with sodium sulfate and the solvent was distilled to obtain 1.6 gm residue containing (R)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylsulfinyl]- 1 H-benzimidazole (R-omeprazole).
Example 5 Treat the mother liquor (containing 1-(R)-camphor sulfonyl-(6- and 5-)-methoxy- 2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1 H-benzimidazole in 3.2 : 1 ratio) from example 3 as follows: The solvent was distilled to obtain a residue. The residue was dissolved in methylene chloride (100 ml) and washed with water (2 x 50 ml). The organic layer was distilled, methanol (80 ml) was added to the residue obtained and stirred for 30 min at 25°C. Then sodium hydroxide solution (3.0 gm in 10 ml water) was added slowly for 10 min. The contents were stirred for 3 hours at 25°C. Then methanol was distilled off to obtain a residue. To the residue was added water (50 ml), the pH was adjusted to 6.8 with acetic acid and the product was extracted with methylene chloride (3 X 50 ml). The layers were separated. The methylene chloride layer was washed with 5% aq. sodium chloride (50 ml), dried with sodium sulfate and the solvent was distilled to obtain 6.5 gm residue containing (S -5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylsulfinyl]- 1 H-benzimidazole (Esomeprazole).
Example 6 The residue (6.5 gm) obtained as in example 5 was dissolved in methanol (40 ml) at 25°C and the solution was cooled to 5-10°C. Potassium hydroxide solution in methanol (2.0 gm in 10 ml methanol) was added slowly for 30 min. During addition of potassium hydroxide solution, solid was thrown out. The temperature was raised to 25°C, stirred for 14 hours, filtered and dried to obtain 6.2 gm of potassium salt of (S)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2- pyridyl)methylsulfinyl]-1 H-benzimidazole (Esomeprazole potassium) (Enantiomeric excess : 99.4%).
Example 7 Potassium salt of (S)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl) methylsulfinyrj-1 H-benzimidazole (Esomeprazole potassium) (6.2 gm) was dissolved in water ( 80 ml). To this solution, was added magnesium chloride solution (1.8 gm in 50 ml water), and then the contents were stirred for 1 hour at 25°C. The solid precipitated was filtered, washed with water and dried under vacuum for 12 hours at 40°C to obtain 4.5 gm of esomeprazole magnessium dfήydrate (enantiomeric excess: 99.5%).

Claims

We claim:
1. The present invention provides a stereoselective synthesis for preparing a benzimidazoie sulfoxide of formula I or a salt thereof either as a single enantiomer or in an enantiomerically enriched form:
Figure imgf000024_0001
Wherein R is
Figure imgf000024_0002
X is
Figure imgf000024_0003
and R-i - R4 are the same or different and selected from hydrogen, alkyl, alkoxy, halogen, halo-alkoxy, alkylcarbonyl, alkoxycarbonyl, oxazolyl, trifluroalkyl, or adjacent groups Ri - R4form ring structures which may be further substituted; wherein R5 and R7 are same or different and selected from hydrogen, alkyl, alkylthio, alkoxy optionally substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, phenylalkyl and phenylalkoxy; R6 is selected from hydrogen, alkyl, alkylthio, . alkoxy optionally substituted by fluorine, alkoxyalkoxy, dialkylamino, piperidino, morpholino, halogen, nitro, phenylalkyl and phenylalkoxy; R8 is hydrogen or forms an alkylene chain together with R7 and R9 and R10 are, same or different and selected from hydrogen, halogen and alkyl; which comprises: a) reacting a benzimidazoie sulfide of formula II, or a salt thereof:
Figure imgf000025_0001
wherein R, X and R1 - R4 are as defined for formula I; with a chiral compound of formula III : RC-Z-Y ||| wherein Rc is a chiral moiety having at least one asymmetric center and at least one asymmetric center in the chiral moiety can have either R or S configuration; Z is - O o O — S— ■ — S— or — C— O and Y is a leaving group to provide a compound of formula IV:
Figure imgf000025_0002
wherein R, X and R-i - R are as defined for formula I; and Rc and Z are as defined for formula III; b) oxidizing the compound of formula IV to give a diastereomeric excess of compound of formula V:
Figure imgf000025_0003
wherein R, X, RG, R-, - R4 and Z are as defined for formula IV and star (*) refers to excess of one configuration at the sulfur atom of the sulfoxide group over the opposite configuration; c) if required, separating the diastereomers of formula V; and d) deprotecting the product of step (b); or separated diastereomers of step (c) with an acid or base to provide a single enantiomer or enantiomerically -enriched compound of formula I and optionally converting the enantiomer formed to the salt.
2. The process of claim 1 , wherein the salt of formula II used in step (a) is an inorganic salt.
3. The process of claim 2, wherein the inorganic salt is alkali or alkaline earth metal salt.
4. The process of claim 3, wherein the alkali metal salt is sodium or potassium salt.
5. The process of claim 1 , wherein the salt of formula II used in step (a) is an organic ammonium salt.
6. The process of claim 5, wherein the organic salt is organic ammonium salt of formula II.
7. The process of claim 6, wherein the organic ammonium salt of formula II is the tetrabutylammonium, guanidinium or tert-butylammonium salt of formula II.
8. The process of claim 7, wherein the organic ammonium salt of formula II is the tetrabutylammonium salt of formula II.
9. The process of claim 1 , wherein the reaction in the step (a) is carried out in a solvent.
10. The process of claim 9, wherein the solvent is selected from the group consisting of esters, alcohols, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, aromatic hydrocarbons, halogenated hydrocarbons, ketones, ethers and diethyl carbonate; and a mixture thereof.
11. The process of claim 10, wherein the solvent is selected from ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate, ethyl formate, methanol, ethanol, isopropyl alcohol, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, benzene, toluene, xylene, methylenechloride, chloroform, carbontetrachloride, ethylene dichloride, acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone, tert- butyl methyl ether, diethyl ether and diethyl carbonate; and a mixture thereof.
12. The process of claim 10, wherein the solvent is selected from halogenated hydrocarbon solvents and aromatic hydrocarbon solvents.
13. The process of claim 12, wherein the halogenated hydrocarbon solvent is methylene chloride or ethylenedichloride; and the aromatic hydrocarbon solvent is toluene, benzene or xylene.
14. The process of claim 13, wherein the solvent is methylene chloride.
15. The process of claim 1 , wherein the step (a) is carried out in the presence of a base.
16. The process of claim 15, wherein the base is N,N-diisopropylethylamine or triethylamine.
17. The process of claim 16, wherein the base is N,N-diisopropylethylamine.
18. The process of claim 1 , wherein Z of formula 111 is O II — s — II o
19. The process of claim 1 , wherein Y of formula III is halogen, hydroxy or reactive esterified hydroxy.
20. The process of claim 19, wherein reactive esterified hydroxy is acetoxy or trifluoroacetoxy.
21. The process of claim 19, wherein halogen is CI, Br or I.
22. The process of claim 21 , wherein halogen is CI or Br.
23. The process of claim 22, wherein halogen is CI.
24. The process of claim 1 , wherein Rc-Z- of formula-Ill is selected from (S) or (R) -camphor sulfonyl, (S)- or (R )-glycidylsulfonyl-, D- or L-mandeloyl, a stereo isomeric 1-(ethoxycarbonyl)-3-phenylpropyl]alanyl, (D) or (L)-phenyl alanyl and (D) or (L)-alanyl.
25. The process of claim 24, wherein Rc-Z- is (S)-camphor sulfonyl.
26. The process of claim 24, wherein Rc-Z- is (R) -camphor sulfonyl.
27. The process of claim 1 , wherein the oxidation reaction in the step (b) is carried out with an oxidizing agent is selected from nitric acid, hydrogen peroxide, peracids, peresters, ozpne, dinitrogentetraoxide, iodosobenzene, N-halosuccinimide, 1-chlorobenzotriazole, tert -butylhypo chlorite, sodium hypochlorite, diazobicyclo-[2,2,2]-octane bromine complex, sodium metaper iodate, selenium dioxide, manganese dioxide, chromic acid, cericammonium nitrate, bromine, chlorine, and sulfuryl chloride.
28. The process of claim 27, wherein the oxidizing agent is selected from peracids and m-chloro perbenzoic acid; hydrogen peroxide, sodium hypochlorite and sodium metaperiodate.
29. The process of claim 28, wherein the per acid is peracetic acid and m-chloro perbenzoic acid.
30. The process of claim 29, wherein the per acid is m-chloro perbenzoic acid.
31. The process of claim 27, wherein the oxidation reaction is carried out with m- chloro perbenzoic acid and in methylene chloride solvent.
32. The process of claim 27, wherein the oxidation is carried out in a solvent or a mixture of solvents.
33. The process of claim 32, wherein the solvent is selected from the group consisting of esters, carboxylic acid solvents, alcohols, acetonitrile, . tetrahydrofuran, dimethyl formamide, dimethylsulfoxide, dioxane, aromatic hydrocarbons, halogenated hydrocarbons, ketones, ethers, diethyl carbonate and a mixture thereof.
34. The process of claim 33, wherein the solvent is selected from ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate, ethyl formate, acetic acid, methanol, ethanol, isopropyl alcohol, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, benzene, toluene, xylene, methylenechloride, chloroform, carbontetrachloride, ethylene dichloride, acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone, tert-butyl methyl ether, diethyl ether, diethyl carbonate and a mixture thereof.
35. The process of claim 33, wherein the solvent is selected from halogenated hydrocarbon solvents, carboxylic acid solvents and aromatic hydrocarbon solvents.
36. The process of claim 35, wherein the halogenated hydrocarbon solvent is methylene chloride or ethylenedichloride; carboxylic acid solvent is acetic acid; and the aromatic hydrocarbon solvent is toluene, benzene or xylene.
37. The process of claim 36, wherein the solvent is methylene chloride or acetic acid.
38. The process of claim 27, wherein the oxidation step is carried out in the presence of a catalyst.
39. The process of claim 38, wherein the catalyst is vanadium acetyl acetonate.
40. The process of claim 1 , wherein the diastereomers are separated in step (c) by a chromatographic technique or fractional crystallization.
41. The process of claim 40, wherein the diastereomers are separated by fractional crystallization of preferentially one diastereomer from a solution of mixture of the diastereomers.
42. The process of claim 41, wherein the solvent used in the solution is selected from the group consisting of alcohols, ketones, esters, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, diethyl carbonate and a mixture thereof.
43. The process of claim 42, wherein the solvent is selected from methanol, ethanol, isopropyl alcohol, propanol, tert-butanol, n-butanol, acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone, ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate, ethyl formate, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, diethyl carbonate and a mixture thereof.
44. The process of claim 42, wherein the solvent is an alcohol or a ketone.
45. The process of claim 44, wherein the ketone solvent is acetone.
46. The process of claim 44, wherein the alcohol solvent is isopropyl alcohol or ethanol.
47. The process of claim 1 , wherein the acid used in step (d) is a carboxylic acid or sulfonic acid.
48. The process of claim 47, wherein the carboxylic acid is acetic acid or formic acid.
49. The process of claim 1 , wherein the base used in step (d) is an amine.
50. The process of claim 49, wherein the amine is triethyl amine or N,N- diisopropylethylamine.
51. The process of claim 1 , wherein the base used in step (d) is selected from the group consisting of hydroxides, carbonates, bicarbonates, alkoxides and oxides of alkali or alkaline earth metals.
52. The process of claim 51 , wherein the alkalimetal is lithium, sodium or potassium.
53. The process of claim 51 , wherein the base is sodium hydroxide or potassium hydroxide.
54. The process of claim 51 , wherein the alkaline earth metal is magnesium.
55. The process of claim 1 , wherein the deprotection in step (d) is carried out in a solvent selected from alcohols, ketones, esters, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, diethyl carbonate and a mixture thereof.
56. The process of claim 55, wherein the solvent is selected from alcohol and ketone solvents.
57. The process of claim 56, wherein the alcohol is methanol, isopropyl alcohol or ethanol.
58. The process of claim 41 , wherein the diastereomer present in the mother liquor after fractional crystallization in step (c) is subjected to deprotection in step (d).
59. The process of claim 41, wherein the diastereomer of crystallized solid is subjected to deprotection in step (d).
60. The process of claim 58, wherein the deprotection is carried "out with a base.
61. The process of claim 59, wherein the deprotection is carried out with a base.
62. The process of claim 1 , wherein the sulfoxide of formula I or a salt thereof either as a single enantiomer or in an enantiomerically enriched form prepared is the sulfoxide of any of the formulas l(i) to l(vi) or salt thereof either as a single enantiomer or an enantiomerically enriched form:
Figure imgf000030_0001
Figure imgf000031_0001
63. The process of claim 62, wherein the sulfoxide prepared is the sulfoxide of formula l(i) or a salt thereof either as a single enantiomer or an enantiomerically enriched form.
64. The process of claim 63, wherein the sulfoxide is sodium, potassium or magnesium salt of esomeprazole.
65. A process for preparation of sulfoxide of formula l(i) as enantiomers or enantiomerically enriched enantiomers or a salt thereof :
Figure imgf000031_0002
which process comprises: a) reacting 5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-thio]-1 H- benzimidazole or a salt thereof with (S)- or (R ) camphor sulfonylchloride to obtain a mixture of 1-(S or R)-camphor sulfonyl-5-methoxy-2-[(3,5- dimethyl-4-methoxy-2-pyridyl)methyl-thio]-1 H-benzimidazole and 1-(S or R)-camphor sulfonyl-6-methoxy-2-[(3,5-dimethyl-4-methoxy-2- pyridyl)methyl-thio]-1 H-benzimidazole; b) oxidizing the compound formed in step (a) to give a diastereomeric excess sufloxides having one configuration at sulfur atom of sulfoxide group over that having the opposite configuration; c) separating the diastereomers formed in step (b); and d) deprotecting the separated diastereomers with an acid or base to provide a single enantiomer or enantiomerically enriched compound of (R )- or (S)-5-Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylsulfinyl]1-H- benzimidazoie ((R)- or (S)-esomeprazole) and optionally converting the (R)- or (S)-esomeprazole to the salt.
66. The process of claim 65, wherein the salt is sodium, potassium or magnesium salt.
67. The process of claim 66, wherein the salt is potassium or magnesium salt.
68. The process of claim 67, where.in the salt is magnesium salt. .
69. The process of claim 65, wherein the reaction in the step (a) is carried out in a solvent.
70. The process of claim 69, wherein the solvent is selected from halogenated hydrocarbon solvents and aromatic hydrocarbons.
71. The process of claim 70, wherein the halogenated hydrocarbon solvent is methylene chloride or ethylenedichloride.
72. The process of claim 65, wherein the reaction in step (a) is carried out in the presence of a base.
73. The process of claim 72, wherein the base is N,N-diisopropylethylamine or triethyl amine.
74. The process of claim 65, wherein the oxidation reaction in the step (b) is carried out with an oxidizing agent is selected from nitric acid, hydrogen peroxide, peracids, peresters, ozone, dinitrogentetraoxide, iodosobenzene, N-halosuccinimide, 1-chlorobenzotriazole, tert -butylhypo chlorite, sodium hypochlorite, diazobicyclo-[2,2,2]-octane bromine complex, sodium metaper iodate, selenium dioxide, manganese dioxide, chromic acid, cericammonium nitrate, bromine, chlorine, and sulfuryl chloride.
75. The process of claim 74, wherein the oxidizing agent is selected from peracids and m-chloro perbenzoic acid; hydrogen peroxide, sodium hypochlorite and sodium metaperiodate.
76. The process of claim 75, wherein the per acid is peracetic acid and m-chloro perbenzoic acid.
77. The process of claim 76, wherein the per acid is m-chloro perbenzoic acid.
78. The process of claim 74, wherein the oxidation reaction is carried out with m- chloro perbenzoic acid in methylene chloride solution.
79. The process of claim 74, wherein the oxidation is carried out in a solvent or a mixture of solvents.
80. The process of claim 79, wherein the solvent is selected from the group consisting of esters, carboxylic acid solvents, alcohols, acetonitrile, tetrahydrofuran, dimethyl formamide, dimethylsulfoxide, dioxane, aromatic hydrocarbons, halogenated hydrocarbons, ketones, ethers, diethyl carbonate and a mixture thereof.
81. The process of claim 80, wherein the solvent is selected from ethyl acetate, methyl acetate, isopropyl acetate, tert-butyl methyl acetate, ethyl formate, acetic acid, methanol, ethanol, isopropyl alcohol, acetonitrile, tetrahydrofuran, dimethylformamide, dimethylsulfoxide, dioxane, benzene, . toluene, xylene,. methylenechloride, chloroform, carbontetracblorjde,. ethylene dichloride, acetone, methyl ethyl ketone, methyl isobutyl ketone, diethyl ketone, tert-butyl methyl ether, diethyl ether, diethyl carbonate and a mixture thereof.
82. The process of claim 80, wherein the solvent is selected from halogenated hydrocarbon solvents, carboxylic acid solvents and aromatic hydrocarbon solvents.
83. The process of claim 82, wherein the halogenated hydrocarbon solvent is methylene chloride or ethylenedichloride; carboxylic acid solvent is acetic acid; and the aromatic hydrocarbon solvent is toluene, benzene or xylene.
84. The process of claim 83, wherein the solvent is methylene chloride or acetic acid.
85. The process of claim 74, wherein the oxidation step is carried out in the presence of a catalyst.
86. The process of claim 85, wherein the catalyst is vanadium acetyl acetonate.
87. The process of claim 65, wherein the diastereomers are separated in step (c) by a chromatographic technique or fractional crystallization.
88. The process of claim 87, wherein the diastereomers are separated by fractional crystallization of preferentially one diastereomer from a solution of mixture of the diastereomers.
89. The process of claim 88, wherein the solvent used in the solution is selected from alcohols or ketones.
90. The process of claim 89, wherein alcohol is isopropyl alcohol.
91. The process of claim 65, wherein the base used in step (d) is selected from hydroxides, carbonates and bicarbonates of alkali metals.
92. The process of claim 74, wherein the base used in step (d) is triethylamine.
93. Substantially pure compounds of formula Via to Vld:
Figure imgf000034_0001
wherein R, X and Ri - R are as defined for formula I and Rc and Z are as defined for formula III of claim 1; with the proviso that at least one of Ri to R4 is different from any of the rest of them provided if R-i and R4 are same, R2 and R3 are different; or if R2 and R3 are same, Rn and R are different.
94. The compounds of claim 93, wherein R is
95. The compounds of claim 93, wherein X is -CH2-
96. The compounds of formula Via to Vld of claim 93, wherein R is
Figure imgf000035_0002
R-i = R3 = R4 = H; R2 is -OCH3and X is -CH2.
97. The compounds of claims 93 to 96, wherein Z is O II — s — II o
98. The compounds of claims 93 to 96, wherein Rc-Z- of formulas Via to Vld are selected from (S) or (R) -camphor sulfonyl, (S)- or (R)-glycidylsulfonyl-, D- or L-mandeloyl, a stereo isomeric 1-(ethoxycarbonyl)-3-phenylpropyl]alanyl, (D) or (L)-phenyl alanyl and (D) or (L)-alanyl.
99. The process of claim 98, wherein Rc-Z- is (S) or (R) -camphor sulfonyl.
100. The process of claim 99, wherein Rc-Z- is (R) -camphor sulfonyl.
101. The process of claim 65, wherein (R)-camphor sulfonyl chloride is used in step (a); oxidation in step (b) is carried out using m-chloroperbenzoic acid, peracetic acid, hydrogen peroxide or sodium hypochlorite to give diastereomeric excess of 1-(R)-camphor sulfonyl-(5- and 6-)-methoxy-2- [(3,5-dimethyl-4-methoxy-2-pyridyl)methyl-(S)-sulfinyl]-1 H-benzimidazole over 1-(R)-camphor sulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4- methoxy-2-pyridyl)methyl-(R)-sulfinyl]-1 H-benzimidazole, diastereomers are separated in step (c) by fractional crystallization, deprotection of 1-(R)- camphor sulfonyl-(5- and 6-)-methoxy-2-[(3,5-dimethyl-4-methoxy-2- pyridyl)rηethyl-(S)-sulfinyl]-1 H-benzimidazole present in the mother liquor of step (c) is carried out using a base to obtain (S)-enantiomer of 5- Methoxy-2-[(3,5-dimethyl-4-methoxy-2-pyridyl)methylsulfinyl]1-H- benzimidazole (esomeprazole) or enantiomerically enriched (S)- enantiomer and optionally converting to the salt.
102. The process of claim 101 , wherein fractional crystallization is carried out in isopropyl alcohol.
103. The process of claim 101 , wherein the mixture of enantiomers used in step (a) is the racemic omeprazole.
104. Benzimidazoie sulfides of formula IV:
Figure imgf000036_0001
wherein R, X and Ri - R are as defined for formula I and Rc and Z are as defined for formula III of claim 1 ; with the proviso that at least one of R-, to R4 is different from any of the rest of them provided if R1 and R4 are same, R2 and R3 are different; or if R2 and R3 are same, Ri and R4 are different.
105. The compounds of claim 104, wherein X is -CH2 and R is
Figure imgf000036_0002
106. The compounds of claim 104, wherein R is
Figure imgf000037_0001
Ri = R3 = R = H; R2 is -OCH3 and X is -CH2.
107. The compounds of claims 104 to 106, wherein Z is
Figure imgf000037_0002
108. The compounds of claims 104 to 106, wherein RG-Z- of formula IV is selected from (S) or (R) -camphor sulfonyl, (S)- or (R )-glycidylsulfonyl-, D- or L-mandeloyl, a stereo isomeric 1-(ethoxycarbonyl)-3- phenylpropyljalanyl, (D) or (L)-phenyl alanyl and (D) or (L)-alanyl.
109. The process of claim 108, wherein Rc-Z- is (S) or (R) -camphor sulfonyl.
110. The process of claim 109, wherein Rc-Z- is (R) -camphor sulfonyl.
111. Compounds of formula IVa and IVb in substantially pure form:
Figure imgf000037_0003
Figure imgf000037_0004
wherein R, X and Ri - R4 are as defined for formula I and Rc and Z are as defined for formula III of claim 1; with the proviso that at least one of Ri to R4 is different from any of the rest of them provided if R-i and R4 are same, R2 and R3 are different; or if R2 and R3 are same, R1 and R4 are different.
112. The compounds of claim 111 , wherein X is -CH2 and R is
Figure imgf000038_0001
113. The compounds of claim 111, wherein R is
Figure imgf000038_0002
Ri = R3 = R = H; R2 is -OCH3and X is -CH2.
114. The compounds of claims 111 to 113, wherein Z is
O II — s — II o
115. The compounds of claims 111 to 113, wherein Rc-Z- of formulas Via to Vld are selected from (S) or (R) -camphor sulfonyl, (S)- or (R)-glycidylsulfonyl-, D- or L-mandeloyl, a stereo isomeric 1-(ethoxycarbonyl)-3- phenylpropyljalanyl, (D) or (L)-phenyl alanyl and (D) or (L)-alanyl.
116. The process of claim 115, wherein Rc-Z- is (S) or (R) -camphor sulfonyl.
117. The process of claim 116, wherein Rc-Z- is (R)-camphor sulfonyl.
PCT/IN2004/000143 2004-05-28 2004-05-28 A novel stereoselective synthesis of benzimidazole sulfoxides WO2005116011A1 (en)

Priority Applications (10)

Application Number Priority Date Filing Date Title
PCT/IN2004/000143 WO2005116011A1 (en) 2004-05-28 2004-05-28 A novel stereoselective synthesis of benzimidazole sulfoxides
DK04735319.8T DK1748998T3 (en) 2004-05-28 2004-05-28 New stereoselective synthesis of benzimidazole sulfoxides
AT04735319T ATE456566T1 (en) 2004-05-28 2004-05-28 NEW STEREOSELECTIVE SYNTHESIS OF BENZIMIDAZOLE SULFOXIDES
US10/503,846 US7365206B2 (en) 2004-05-28 2004-05-28 Stereoselective synthesis of benzimidazole sulfoxides
DE602004025386T DE602004025386D1 (en) 2004-05-28 2004-05-28 NEW STEREOSELECTIVE SYNTHESIS OF BENZIMIDAZOLSULFOXIDEN
PT04735319T PT1748998E (en) 2004-05-28 2004-05-28 A novel stereoselective synthesis of benzimidazole sulfoxides
EP04735319A EP1748998B1 (en) 2004-05-28 2004-05-28 A novel stereoselective synthesis of benzimidazole sulfoxides
ES04735319T ES2338556T3 (en) 2004-05-28 2004-05-28 NOVEDOUS STEREOSELECTIVE SYNTHESIS OF SULFOXIDES OF BENZIMIDAZOL.
US11/865,295 US7928241B2 (en) 2004-05-28 2007-10-01 Stereoselective synthesis of benzimidazole sulfoxides
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WO2010003974A3 (en) * 2008-07-09 2010-07-01 Lek Pharmaceuticals D.D. Process for preparation of esomeprazole sodium of high chemical purity and new forms of esomeprazole sodium
WO2010095144A2 (en) * 2009-02-04 2010-08-26 Msn Laboratories Limited Process for the preparation of proton pump inhibitors
WO2011121594A1 (en) * 2010-04-01 2011-10-06 Neuland Laboratories Ltd. A process for the preparation of itraconazole
US8354541B2 (en) 2008-11-18 2013-01-15 Hetero Research Foundation Optical purification of esomeprazole
US8394963B2 (en) 2007-02-21 2013-03-12 Cipla Limited Process for the preparation of esomeprazole magnesium dihydrate

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EP1801110A1 (en) 2005-12-22 2007-06-27 KRKA, tovarna zdravil, d.d., Novo mesto Esomeprazole arginine salt
US8394963B2 (en) 2007-02-21 2013-03-12 Cipla Limited Process for the preparation of esomeprazole magnesium dihydrate
EP2842953A1 (en) 2007-02-21 2015-03-04 Cipla Limited Process for the preparation of esomeprazole magnesium dihydrate
WO2010003974A3 (en) * 2008-07-09 2010-07-01 Lek Pharmaceuticals D.D. Process for preparation of esomeprazole sodium of high chemical purity and new forms of esomeprazole sodium
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US8354541B2 (en) 2008-11-18 2013-01-15 Hetero Research Foundation Optical purification of esomeprazole
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WO2011121594A1 (en) * 2010-04-01 2011-10-06 Neuland Laboratories Ltd. A process for the preparation of itraconazole

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DK1748998T3 (en) 2010-05-10
US7928241B2 (en) 2011-04-19
ATE456566T1 (en) 2010-02-15
US7365206B2 (en) 2008-04-29
US20060166986A1 (en) 2006-07-27
US8173817B2 (en) 2012-05-08
EP1748998B1 (en) 2010-01-27
US20080076930A1 (en) 2008-03-27
PT1748998E (en) 2010-03-24
US20080076929A1 (en) 2008-03-27

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