WO2005096805A2 - Cambium/xylem-preferred promoters and uses thereof - Google Patents
Cambium/xylem-preferred promoters and uses thereof Download PDFInfo
- Publication number
- WO2005096805A2 WO2005096805A2 PCT/BR2005/000041 BR2005000041W WO2005096805A2 WO 2005096805 A2 WO2005096805 A2 WO 2005096805A2 BR 2005000041 W BR2005000041 W BR 2005000041W WO 2005096805 A2 WO2005096805 A2 WO 2005096805A2
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- WIPO (PCT)
- Prior art keywords
- plant
- xylem
- cambium
- recombinant host
- host cell
- Prior art date
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8216—Methods for controlling, regulating or enhancing expression of transgenes in plant cells
- C12N15/8222—Developmentally regulated expression systems, tissue, organ specific, temporal or spatial regulation
- C12N15/8223—Vegetative tissue-specific promoters
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8216—Methods for controlling, regulating or enhancing expression of transgenes in plant cells
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8216—Methods for controlling, regulating or enhancing expression of transgenes in plant cells
- C12N15/8222—Developmentally regulated expression systems, tissue, organ specific, temporal or spatial regulation
- C12N15/8223—Vegetative tissue-specific promoters
- C12N15/8227—Root-specific
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8242—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
- C12N15/8243—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
- C12N15/8255—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving lignin biosynthesis
Definitions
- tissue-preferred, particularly cambium/xylem- preferred, promoters that can serve as regulatory regions for expression of heterologous nucleotide sequences of interest in a tissue-preferred manner is essential for the genetic engineering of plants exhibiting particular traits.
- the cambium/xylem-preferred promoters were identified through the analysis of a collection of Expressed Sequence Tags (ESTs) from Populus sp, representing apical shoot, bark, cambium, seed, xylem, leaf and root tissue. Based on the expression profile of those ESTs among the different tissues, the twelve genes referred to supra were shown to be liighly and preferably expressed in the cambium and/or in the xylem of Populus. [0008] The cambium/xylem-preferred promoters of the invention are set forth at SEQ ID NOS.: 1-12.
- compositions of the invention further comprise nucleotide sequences having at least 65% identity to the sequences set forth in SEQ ID NOS.: 1-12 or a fragment thereof, and nucleotide sequences that hybridize under high stringency conditions to any one of the aforementioned sequences.
- promoters that regulate the expression of genes specifically in the cambium and/or xylem were identified and isolated from Populus sp.
- the SuSy gene encodes an isoform of sucrose synthase, an enzyme involved in the conversion of sucrose into UDP-glucose in the developing xylem.
- UDP-glucose is the building block of cellulose that is synthesized and deposited in the plant cell wall.
- the SuSy gene disclosed herein is preferentially expressed in the cambium/xylem of Populus sp, although low levels of expression can be observed in other tissues (FIG. 2).
- sequence identity to any of the promoter sequences disclosed herein is preferably made using art known methodologies such as the BLAST program, or any sequence alignment program that allows the alignment of identical nucleotides and verification of mismatches between non-identical nucleotides so that the percentage of identity of compared sequences could be estimated.
- the cambium/xylem-preferred promoters of the invention may be used to express a gene of interest.
- the expression of native and/or non-native genes could be regulated in the cambium and/or xylem tissues of a plant, thus altering a plant's cellulose content, lignin content, pathogen or insect resistance, wood development, wood quality, and the like.
- the native and/or non-native genes include those encoding enzymes, transporters; cofactors, transcription factors and a number of other genes that would affect cellulose and/or lignin deposition in the plant or pathogen or insect resistance.
- "genes of interest" include those involved in cellulose metabolism and lignin metabolism.
- any gene of interest can be operably linked to the promoter of the invention and expressed in plant cambium and/or xylem tissues.
- the cambium/xylem-preferred promoters of the present invention when operably linked to a gene of interest and stably incorporated into a plant genome, drive cambium and/or xylem-preferred expression of the said gene of interest.
- Cambium and or xylem-preferred expression is intended to mean that expression of the gene of interest is most abundant in the cambium and/or in the xylem, although some level of expression of the gene of interest may occur in other plant tissues.
- Such expression cassettes comprise the cambium/xylem-preferred promoters of the present invention, or variants or fragments thereof, operably linked to a gene of interest whose expression is directed to the cambium and/or xylem.
- Such an expression cassette may contain restriction sites for insertion of the gene of interest under the transcriptional control of the cambium/xylem-preferred promoters.
- the expression cassette may additionally contain a number of other nucleic acid sequences, including selectable marker genes; transcriptional and translational initiation sequences, and a plant transcriptional and translational termination sequence.
- the termination region may be native with the DNA sequence of interest or may be from the Ti-plasmid of A.
- selectable marker genes include, but are not limited to, genes encoding resistance to sulfonamide (Guerineau et al. (1990) Plant Mol. Biol. 15:127- 136), bromoxynil (Stalker et al. (1988) Science 242:419-423), glyphosate (Shaw et al. (1986) Science 233:478-481) and phosphinothricin (DeBlock et al. (1987) EMBO J. 6:2513-2518).
- the expression cassettes of the present invention operably linked to a gene of interest are useful for the transformation of a variety of plants. Such plants, include, but are not limited to, Eucalyptus species (E.
- alba E. albens, E. amygdalina, E. ⁇ romaphloia, E. ba ⁇ leyana, E. balladoniensis, E. bicostata, E. botryoides, E. brachyandra, E. brassiana, E. brevistylis, E. brockwayi, E. camaldulensis, E. ceracea,. E. cloeziana, E. coccifera, E. cordata, E. cornuta, E. corticosa, E. crebra, E: croajingolensis, E. curtisii, E. dalrympleana, E. deglupta, E.
- tremula P. alba x P. tremula var. glandulosa, P. alba x P. tremuloides, P. balsamifera, P. balsamifera subsp. trichocarpa, P. balsamifera subsp. trichocarpa x P. deltoides, P. ciliata, P. deltoides, P. euphratica, P. euramericana, P. kitakamiensis, P. lasiocarpa, P. laurifolia, P. maximowiczii, P. maximowiczii x P: balsamifera subsp. trichocarpa, P. nigra, P.
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- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Biotechnology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Organic Chemistry (AREA)
- General Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Plant Pathology (AREA)
- Microbiology (AREA)
- Cell Biology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Nutrition Science (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
Abstract
Description
Claims
Priority Applications (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US10/593,426 US9029637B2 (en) | 2004-04-06 | 2005-03-28 | Cambium/xylem-preferred promoters and uses thereof |
AU2005230212A AU2005230212B2 (en) | 2004-04-06 | 2005-03-28 | Cambium/xylem-preferred promoters and uses thereof |
BRPI0509661A BRPI0509661A8 (en) | 2004-04-06 | 2005-03-28 | NUCLEIC ACID MOLECULE, EXPRESSION VECTOR, AND, METHODS OF MAKING A RECOMBINANT HOST CELL AND OF MAKING A PROTEIN |
EP05714408.1A EP1732377B1 (en) | 2004-04-06 | 2005-03-28 | Cambium/xylem-preferred promoters and uses thereof |
AU2010201471A AU2010201471B2 (en) | 2004-04-06 | 2010-04-14 | Cambium/xylem-preferred promoters and uses thereof |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US56022704P | 2004-04-06 | 2004-04-06 | |
US60/560,227 | 2004-04-06 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2005096805A2 true WO2005096805A2 (en) | 2005-10-20 |
WO2005096805A3 WO2005096805A3 (en) | 2009-04-02 |
Family
ID=35125576
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/BR2005/000041 WO2005096805A2 (en) | 2004-04-06 | 2005-03-28 | Cambium/xylem-preferred promoters and uses thereof |
Country Status (7)
Country | Link |
---|---|
US (1) | US9029637B2 (en) |
EP (12) | EP2557171B1 (en) |
AU (2) | AU2005230212B2 (en) |
BR (1) | BRPI0509661A8 (en) |
ES (11) | ES2584320T3 (en) |
PT (11) | PT2557175T (en) |
WO (1) | WO2005096805A2 (en) |
Cited By (6)
Publication number | Priority date | Publication date | Assignee | Title |
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WO2008074115A1 (en) | 2006-12-20 | 2008-06-26 | Alellyx S.A. | Nucleic acid constructs and methods for altering plant fiber length and/or plant height |
WO2008074116A1 (en) | 2006-12-20 | 2008-06-26 | Alellyx S.A. | Nucleic acid molecules encoding plant proteins in the c3hc4 family and methods for the alteration of plant cellulose and lignin content |
WO2009134785A1 (en) * | 2008-04-28 | 2009-11-05 | Michigan Technological University | Fiber-specific promoter elements |
WO2010020868A2 (en) | 2008-08-22 | 2010-02-25 | Alellyx S.A. | Increasing cell wall deposition and biomass in plants |
WO2010138971A1 (en) * | 2009-05-29 | 2010-12-02 | Edenspace Systems Corporation | Plant gene regulatory elements |
US8106257B2 (en) | 2004-08-18 | 2012-01-31 | Monsanto Do Brasil Ltda. | Altering lignin and wood density |
Families Citing this family (4)
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CN101280315B (en) * | 2008-05-20 | 2010-09-01 | 中国农业科学院油料作物研究所 | Gene 4-CL for Chinese white poplar lignose monomer synthesis and application thereof |
US9650646B2 (en) | 2013-01-11 | 2017-05-16 | University Of Florida Research Foundation, Inc. | Materials and methods to increase plant growth and yield |
US9580758B2 (en) | 2013-11-12 | 2017-02-28 | Luc Montagnier | System and method for the detection and treatment of infection by a microbial agent associated with HIV infection |
US10000762B2 (en) * | 2015-05-20 | 2018-06-19 | The United States Of America, As Represented By The Secretary Of Agriculture | Sorghum-derived transcription regulatory elements predominantly active in root hair cells and uses thereof |
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GB9403512D0 (en) | 1994-02-24 | 1994-04-13 | Olsen Odd Arne | Promoter |
US6420629B1 (en) * | 1996-09-09 | 2002-07-16 | B.C. Research Inc. | Process of increasing plant growth and yield and modifying cellulose production in plants |
AU9072298A (en) * | 1997-08-13 | 1999-03-08 | Vlaams Interuniversitair Instituut Voor Biotechnologie Vzw | Tissue-specific poplar promoters |
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2005
- 2005-03-28 EP EP12192005.2A patent/EP2557171B1/en not_active Not-in-force
- 2005-03-28 ES ES12192001.1T patent/ES2584320T3/en active Active
- 2005-03-28 US US10/593,426 patent/US9029637B2/en not_active Expired - Fee Related
- 2005-03-28 ES ES12192005.2T patent/ES2584321T3/en active Active
- 2005-03-28 PT PT121920169T patent/PT2557175T/en unknown
- 2005-03-28 PT PT121919807T patent/PT2557165T/en unknown
- 2005-03-28 ES ES12191986.4T patent/ES2584317T3/en active Active
- 2005-03-28 EP EP12192001.1A patent/EP2557170B1/en not_active Not-in-force
- 2005-03-28 EP EP05714408.1A patent/EP1732377B1/en active Active
- 2005-03-28 ES ES12191998.9T patent/ES2583080T3/en active Active
- 2005-03-28 EP EP12191992.2A patent/EP2557168B1/en not_active Not-in-force
- 2005-03-28 ES ES12191983.1T patent/ES2584316T3/en active Active
- 2005-03-28 ES ES12192011.0T patent/ES2584383T3/en active Active
- 2005-03-28 EP EP12192008.6A patent/EP2557172B1/en not_active Not-in-force
- 2005-03-28 EP EP12192011.0A patent/EP2557173B1/en not_active Not-in-force
- 2005-03-28 EP EP12192016.9A patent/EP2557175B1/en not_active Not-in-force
- 2005-03-28 PT PT121920086T patent/PT2557172T/en unknown
- 2005-03-28 BR BRPI0509661A patent/BRPI0509661A8/en active Search and Examination
- 2005-03-28 ES ES12192016.9T patent/ES2587282T3/en active Active
- 2005-03-28 EP EP12191998.9A patent/EP2557169B1/en not_active Not-in-force
- 2005-03-28 ES ES12192012.8T patent/ES2584326T3/en active Active
- 2005-03-28 ES ES12192008.6T patent/ES2587281T3/en active Active
- 2005-03-28 PT PT121920110T patent/PT2557173T/en unknown
- 2005-03-28 PT PT121920011T patent/PT2557170T/en unknown
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- 2005-03-28 EP EP12192012.8A patent/EP2557174B1/en not_active Not-in-force
- 2005-03-28 PT PT121919831T patent/PT2557166T/en unknown
- 2005-03-28 EP EP12191986.4A patent/EP2557167B1/en not_active Not-in-force
- 2005-03-28 AU AU2005230212A patent/AU2005230212B2/en not_active Ceased
- 2005-03-28 PT PT121920052T patent/PT2557171T/en unknown
- 2005-03-28 EP EP12191983.1A patent/EP2557166B1/en not_active Not-in-force
- 2005-03-28 PT PT121919989T patent/PT2557169T/en unknown
- 2005-03-28 PT PT121919922T patent/PT2557168T/en unknown
- 2005-03-28 ES ES12191992.2T patent/ES2584318T3/en active Active
- 2005-03-28 PT PT121919864T patent/PT2557167T/en unknown
- 2005-03-28 WO PCT/BR2005/000041 patent/WO2005096805A2/en active Application Filing
- 2005-03-28 PT PT121920128T patent/PT2557174T/en unknown
-
2010
- 2010-04-14 AU AU2010201471A patent/AU2010201471B2/en not_active Ceased
Non-Patent Citations (1)
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Cited By (16)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8106257B2 (en) | 2004-08-18 | 2012-01-31 | Monsanto Do Brasil Ltda. | Altering lignin and wood density |
US9228182B2 (en) | 2004-08-18 | 2016-01-05 | Fibria Celulose S.A. | Altering lignin and wood density |
US9080181B2 (en) | 2006-12-20 | 2015-07-14 | Fibria Celulose S.A. | Nucleic acid constructs methods for altering plant fiber length and/or plant height |
CN101583719B (en) * | 2006-12-20 | 2015-03-25 | 孟山都巴西有限公司 | Nucleic acid constructs and methods for altering plant fiber length and/or plant height |
WO2008074116A1 (en) | 2006-12-20 | 2008-06-26 | Alellyx S.A. | Nucleic acid molecules encoding plant proteins in the c3hc4 family and methods for the alteration of plant cellulose and lignin content |
CN101578370B (en) * | 2006-12-20 | 2015-11-25 | 孟山都巴西有限公司 | The nucleic acid molecule of coding C3HC4 family plant protein and the method for change plant cellulose and lignin content |
WO2008074115A1 (en) | 2006-12-20 | 2008-06-26 | Alellyx S.A. | Nucleic acid constructs and methods for altering plant fiber length and/or plant height |
US8338664B2 (en) | 2006-12-20 | 2012-12-25 | Monsanto Do Brasil Ltda. | Nucleic acid molecules encoding plant proteins in the C3HC4 family and methods for the alteration of plant cellulose and lignin content |
US20130160162A1 (en) * | 2006-12-20 | 2013-06-20 | Monsanto Do Brasil Ltda. | Nucleic Acid Molecules Encoding Plant Proteins in the C3HC4 Family and Methods for the Alteration of Plant Cellulose And Lignin Content |
WO2009134785A1 (en) * | 2008-04-28 | 2009-11-05 | Michigan Technological University | Fiber-specific promoter elements |
US8536406B2 (en) | 2008-04-28 | 2013-09-17 | Michigan Technological University | COMT1 gene fiber-specific promoter elements from poplar |
CN102131933B (en) * | 2008-08-22 | 2014-04-09 | 孟山都巴西有限公司 | Increasing cell wall deposition and biomass in plants |
WO2010020868A2 (en) | 2008-08-22 | 2010-02-25 | Alellyx S.A. | Increasing cell wall deposition and biomass in plants |
US20110289629A1 (en) * | 2008-08-22 | 2011-11-24 | Alellyx S.A. | Increasing cell wall deposition and biomass density in plants |
US9267146B2 (en) * | 2008-08-22 | 2016-02-23 | Fibria Celulose S.A. | Increasing cell wall deposition and biomass density in plants |
WO2010138971A1 (en) * | 2009-05-29 | 2010-12-02 | Edenspace Systems Corporation | Plant gene regulatory elements |
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