WO2004053118A1 - Yeast treatment - Google Patents

Yeast treatment Download PDF

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Publication number
WO2004053118A1
WO2004053118A1 PCT/AU2003/001619 AU0301619W WO2004053118A1 WO 2004053118 A1 WO2004053118 A1 WO 2004053118A1 AU 0301619 W AU0301619 W AU 0301619W WO 2004053118 A1 WO2004053118 A1 WO 2004053118A1
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WO
WIPO (PCT)
Prior art keywords
liposome
yeast cell
protoplast
lipid bilayer
spheroplast
Prior art date
Application number
PCT/AU2003/001619
Other languages
French (fr)
Inventor
Michael Patane
Original Assignee
Protech Research Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Protech Research Pty Ltd filed Critical Protech Research Pty Ltd
Priority to AU2003302933A priority Critical patent/AU2003302933B2/en
Priority to JP2004557650A priority patent/JP2006509501A/en
Priority to EP03812529A priority patent/EP1573001B1/en
Priority to NZ541173A priority patent/NZ541173A/en
Priority to DE60313031T priority patent/DE60313031T2/en
Publication of WO2004053118A1 publication Critical patent/WO2004053118A1/en

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/80Vectors or expression systems specially adapted for eukaryotic hosts for fungi
    • C12N15/81Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
    • AHUMAN NECESSITIES
    • A23FOODS OR FOODSTUFFS; TREATMENT THEREOF, NOT COVERED BY OTHER CLASSES
    • A23LFOODS, FOODSTUFFS, OR NON-ALCOHOLIC BEVERAGES, NOT COVERED BY SUBCLASSES A21D OR A23B-A23J; THEIR PREPARATION OR TREATMENT, e.g. COOKING, MODIFICATION OF NUTRITIVE QUALITIES, PHYSICAL TREATMENT; PRESERVATION OF FOODS OR FOODSTUFFS, IN GENERAL
    • A23L33/00Modifying nutritive qualities of foods; Dietetic products; Preparation or treatment thereof
    • A23L33/10Modifying nutritive qualities of foods; Dietetic products; Preparation or treatment thereof using additives
    • A23L33/14Yeasts or derivatives thereof
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/80Vectors or expression systems specially adapted for eukaryotic hosts for fungi
    • C12N15/81Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
    • C12N15/815Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts for yeasts other than Saccharomyces

Definitions

  • the invention relates to liposomes for introducing a molecule into a cell, to processes for making and using liposomes, to yeast cells, including yeast cells for providing flavouring agents and enhancers for foods and foodstuffs, and to processes for making and using yeast cells.
  • Yeast species such as those in the genera Kluyveromyces and Saccharomyces have a number of uses in the food and beverage industries such as, for example, for providing fermentation products and for providing flavouring enhancers.
  • the critical factor for providing the desired effector function, and accordingly, the useful phenotype in a new yeast strain is the action of one or more macromolecules such as proteins. Accordingly, it would be advantageous if one were able to transfect, or in other words, to introduce macromolecules such as proteins into a yeast cell to provide the desired phenotype, as this would avoid the limitations of culture and selection techniques, and also the techniques based on recombinant DNA technology.
  • One way of transfecting macromolecules such as proteins into cells is to use liposomes.
  • a liposome is a structure comprising one or more concentric spheres of a lipid bilayer that enclose an aqueous compartment. To date, it has not been possible to generate a liposome that is capable of transfecting a macromolecule, such as an active enzyme, into a yeast cell.
  • Flavouring agents or enhancers are typically produced from yeast cells according to the following process. First, yeast cells are lysed to release one or more fractions containing RNA. Second, the fractions containing RNA are contacted with 5'-phosphodiesterase to produce ribonucleotides. Finally, the fractions are heated to prevent further degradation of the ribonucleotides. These processes are often expensive, are time consuming and requiring technical expertise, and are notorious for producing a product with low market value.
  • ribonucleotides are conventionally used as a flavouring enhancer by adding the ribonucleotides as an ingredient to a mixture for preparing a food or foodstuff.
  • ribonucleotide must be disclosed on a label for a food product as an additive. This has consequences for the market value of the food product.
  • the invention seeks to at least minimise one or more of the above identified problems or limitations and/or to provide improvements in yeast cells, especially yeast cells for use in providing flavouring enhancers.
  • the invention provides a liposome for fusing with a yeast cell.
  • the liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is phosphatidyl choline (PC), about 10-20 molar % of the liposome lipid bilayer is a cationic amphiphile, about 10 molar % of the liposome lipid bilayer is a sterol and about 30 molar % of the liposome lipid bilayer is phosphatidyl ethanolamine (PE) and/or dioleoylphosphatidylethanolamine (DOPE).
  • the invention provides a process for preparing a yeast cell for fusion with a liposome. The process comprises treating the yeast cell to form a yeast cell spheroplast or protoplast.
  • the invention provides a process for introducing an exogenous molecule into a yeast cell.
  • the process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the exogenous molecule in conditions for permitting the spheroplast or protoplast to receive the liposome.
  • a liposome for use in the process is as described above.
  • the invention provides a process for producing a yeast cell comprising an exogenous molecule.
  • the process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the exogenous molecule in conditions for permitting the spheroplast or protoplast to receive the liposome.
  • the liposome for use in the process is as described above.
  • the invention provides a yeast cell produced by the above described process.
  • the invention provides a use of a yeast cell as described above for producing a food, foodstuff, additive, or an ingredient for producing a food or foodstuff.
  • the invention provides a food, food stuff, additive, or ingredient for production of a food or food stuff, produced by a yeast cell according to the invention.
  • the invention provides a liposome capable of fusing with a yeast cell.
  • the liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is PC, about 10-20 molar % of the liposome lipid bilayer is l,2-dioleoyl-,s7i- glycero-3-trimethylammonium-propane (DOTAP), about 10 molar % of the liposome lipid bilayer is ergosterol and about 30 molar % of the liposome lipid bilayer is PE and/or DOPE.
  • the liposome further comprises an enzyme for hydrolysing a RNA molecule to form a ribonucleotide in a yeast cell.
  • the invention provides a liposome capable of fusing with a yeast cell.
  • the liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is PC, about 10-20 molar % of the liposome lipid bilayer is DOTAP, about 10 molar % of the liposome lipid bilayer is ergosterol and about 30 molar % of the liposome lipid bilayer is PE and/or DOPE.
  • the liposome further comprises an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide.
  • the invention provides a process for producing a liposome comprising an enzyme, as described above.
  • the process comprises forming a dispersion of PC, DOPE and/or PE, ergosterol and DOTAP in an organic solvent, drying the dispersion to form dried lipids and redispersing the dried lipids in an aqueous medium comprising the enzyme to form a liposome.
  • the invention provides a process for producing a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide.
  • the process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome.
  • the invention provides a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide.
  • the yeast cell is one produced by the process described above.
  • the invention provides a process for producing a yeast cell comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome.
  • the invention provides a yeast cell comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide.
  • the invention provides a process for producing a flavour enhancer in a yeast cell. The process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme for hydrolysis of an RNA molecule to form a ribonucleotide, in conditions for permitting the spheroplast or protoplast to receive the liposome and providing conditions for permitting hydrolysis of an RNA molecule in a yeast cell by the enzyme of the liposome, to produce the flavour enhancer.
  • the invention provides a process for producing a flavour enhancer in a yeast cell.
  • the process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide, in conditions for pe ⁇ nitting the spheroplast or protoplast to receive the liposome and providing conditions for permitting deamination of an adenylate in a yeast cell by the enzyme of the liposome, to produce the flavour enhancer.
  • the invention provides a flavour enhancer produced by the above described processes.
  • the invention provides a food or food stuff, additive or ingredient for producing a food or food stuff, comprising a flavour enhancer produced by the above described processes.
  • the invention provides a composition comprising a liposome described above.
  • the inventor has produced a liposome that is capable of fusing with a yeast cell and, importantly, capable of transferring a molecule contained by the liposome to a yeast cell cytoplasm to permit the molecule to perform an intended function in the yeast cell. Accordingly, the invention provides a liposome characterised in that:
  • -about 10-20 molar % of the liposome lipid bilayer is cationic amphiphile; -about 10 molar % of the liposome lipid bilayer is sterol; and
  • the liposome lipid bilayer is PE and/or DOPE.
  • about 50 molar % of the liposome lipid bilayer is PC.
  • about 20 molar % of the liposome lipid bilayer is cationic amphiphile.
  • about 30 molar % of the liposome lipid bilayer is DOPE.
  • about 30 molar % of the liposome lipid bilayer is PE.
  • the sterol is ergosterol, or a molecule with a similar structure for example, cholesterol.
  • Steryl amine or DOTAP are particularly useful in the liposome of the invention as a cationic amphiphile.
  • the liposome lipid bilayer may further comprise oleic acid, hi one embodiment, about 5 molar % of the liposome lipid bilayer is oleic acid. Typically, where the liposome lipid bilayer further comprises oleic acid, less than 30 molar % of the liposome lipid bilayer is PE and/or DOPE.
  • liposomes are particularly useful for fusion with, and transfer of a macromolecule contained by the liposome to a yeast cell:
  • PC -about 50 molar % of the liposome lipid bilayer
  • DOPE -about 30 molar % of the liposome lipid bilayer
  • DOTAP DOTAP
  • ergosterol DOTAP
  • PC -about 40 molar % of the liposome lipid bilayer
  • DOPE -about 30 molar % of the liposome lipid bilayer
  • DOTAP DOTAP
  • ergosterol a liposome lipid bilayer
  • DOTAP DOTAP
  • ergosterol DOTAP
  • -about 30 molar % of the liposome lipid bilayer is PE; -about 20 molar % of the liposome lipid bilayer is DOTAP; and
  • the liposome lipid bilayer is ergosterol.
  • the liposome of the invention further comprises a molecule to be introduced into a yeast cell.
  • the molecule is contained by the liposome, in the sense that it may be encapsulated by the liposome; i.e. it may be confined within an aqueous compartment that is defined by the liposome lipid bilayer.
  • the molecule may be embedded in the lipid bilayer and/or may protrude into the aqueous compartment defined by the bilayer and/or protrude from the surface of the liposome lipid bilayer for contact with the yeast cell.
  • the molecule further comprised by the liposome is an "exogenous molecule", in the sense that it is one that has not been produced by, or derived or obtained from the yeast cell to which the molecule is to be transferred. Accordingly, synthetically or artificially produced molecules, including those not found in nature, and molecules produced by cells other than yeast cells are exogenous molecules.
  • an exogenous molecule may be identical to a molecule that is produced by a yeast cell.
  • a 5' phosphodiesterase that is obtained from a yeast cell is an exogenous molecule to a yeast cell to which the enzyme is to be transferred in the circumstance that the enzyme was not produced by or obtained from that yeast cell.
  • the molecule further comprised in the liposome can be any molecule that is capable of being contained by a liposome and that would impart a desirable effect to a yeast cell.
  • examples of such molecules are those useful for producing fermentation products such as proteins, particularly, enzymes, amino acids, nucleic acids, sugars, organic compounds and mono sodium glutamate.
  • the above described liposome may not comprise a molecule to be introduced to a yeast cell. More specifically, in some circumstances, it is recognised that the liposome has particular utility as a surface for reaction of one or more substrates, hi such circumstances, the liposome of the invention is not provided with a further molecule to be introduced into a yeast cell.
  • the liposome of the invention transfers, or in other words, introduces a molecule contained by the liposome to the yeast cell by endocytosis. Accordingly, typically the liposome has a diameter for permitting endocytosis of the liposome by a yeast cell.
  • a suitable diameter for the liposome is between 100 and 400 nm and a particularly useful liposome is one having a diameter between 200 and 400 nm.
  • destabilisation of the liposome lipid bilayer is an important step in the process by which the liposome fuses with an endosomal bilayer of the yeast cell, leading to transfer of a molecule that may be contained by a liposome to the yeast cell.
  • One approach for causing destabilisation of the liposome lipid bilayer is to adapt the liposome so that the lipid bilayer is sensitive to fluctuations in pH.
  • the liposome of the invention is adapted for destabilisation of the liposome lipid bilayers at the pH of a yeast endosome.
  • a liposome comprising lipid bilayers adapted for destabilisation at a pH of about 5.0 to 6.0 is particularly useful.
  • the inventor recognised that certain manipulations of a yeast cell may be particularly useful for enabling fusion of the liposome with the yeast cell, for example, for transfer of a molecule contained by the liposome to the yeast cell. More particularly, the inventor recognised that certain molecules, including ⁇ (1-6) and (1-3) mannan (yeast gum)/ protein complexes and ⁇ (1- 6) and (1-3) glucan (yeast cellulose)/protein complex with a chitin backbone would need to be removed at least in part from the yeast cell, to form a yeast cell spheroplast, or removed more substantially, to form a yeast cell protoplast.
  • the outer lipid membrane of a yeast cell protoplast otherwise known as the plasmalemma or plasma membrane contains primarily proteins, sterols, sphingolipids and phospholipids.
  • the plasmalemma is sufficient for providing a barrier for regulation of transport of molecular species into and out of the yeast cell.
  • the treatment described herein is sufficient for at least partial removal of yeast gum and yeast cellulose and yet is sufficiently sensitive to provide viable yeast cell spheroplasts or protoplasts that are capable of endocytosis of the liposome of the invention.
  • the invention provides a process for preparing a yeast cell for fusion with a liposome comprising the step of treating the yeast cell to form a yeast cell spheroplast, or a yeast cell protoplast.
  • the yeast cell is treated to form a yeast cell spheroplast or protoplast by contacting the yeast cell with one or more enzymes for at least partial digestion of yeast gum and yeast cellulose. Lyticase and ⁇ -glucuronidase are particularly suitable enzymes for this purpose.
  • the process comprises the further step of isolating a spheroplast or protoplast. A density gradient is particularly useful for this purpose.
  • the yeast cells for treatment in the process to produce the yeast cell spheroplasts or protoplasts are cells existing in the exponential growth phase. In one embodiment, before treatment of the yeast cells to form a yeast cell spheroplast or protoplast, the yeast cells are washed to remove culture media from the yeast cells.
  • the invention provides a process for introducing an exogenous molecule into a yeast cell spheroplast or protoplast.
  • the process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule in conditions for permitting the spheroplast or protoplast to receive the liposome.
  • a liposome for use in the process is as described above.
  • the inventor has observed that the liposome of the invention is received by a yeast cell spheroplast or protoplast by endocytosis.
  • the yeast cell spheroplast or protoplast and liposome are contacted to permit the spheroplast or protoplast to receive the liposome, or in other words, to endocytose the liposome, at about 37°C.
  • the spheroplast or protoplast and liposome may be contacted for endocytosis in a buffer having an osmolarity compatible for a yeast cell.
  • the invention provides a process for producing a yeast cell spheroplast or protoplast comprising an exogenous molecule.
  • the process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule to permit the spheroplast or protoplast to receive the liposome.
  • a liposome for use in the process is as described above.
  • the yeast cell spheroplast or protoplast and liposome may be contacted for pe ⁇ nitting the spheroplast or protoplast to receive the liposome, according to the conditions described above.
  • the process comprises the further step of culturing a yeast cell spheroplast or protoplast comprising the exogenous molecule to provide a yeast cell.
  • the invention provides a yeast cell, spheroplast or protoplast produced by the above described process.
  • Particularly suitable cells, spheroplasts and protoplasts for use in the above described processes are of genera Kluyveriomyces and Saccharomyces.
  • the invention also provides a use of a yeast cell as described above for producing a food, foodstuff, additive or an ingredient for producing a food or foodstuff.
  • the use of the yeast cell is a process comprising the step of contacting the yeast cell with a composition to produce a food, food stuff, additive or an ingredient for producing a food or food stuff.
  • a food, food stuff, additive, or ingredient for production of a food or food stuff produced by a yeast cell according to the invention.
  • the food, food stuff, additive or ingredient for production of a food or food stuff is a product produced by fermentation or Malliard reaction. Examples include products that contain hydrolysed vegetable protein.
  • a particularly useful liposome of the invention comprises an enzyme for hydrolysing RNA molecules in a yeast cell to produce 5 '-ribonucleotides. Accordingly, the invention provides a liposome characterised in that:
  • -about 40-50 molar % of the liposome lipid bilayer is PC
  • -about 10-20 molar % of the liposome lipid bilayer is DOTAP
  • the liposome lipid bilayer is PE and/or DOPE; wherein the liposome comprises 5"phoshpodiesterase.
  • This liposome is particularly useful, because as described further herein, such a liposome can transfect a 5 '-phosphodiesterase into a yeast cell to permit the 5'- phosphodiesterase to hydrolyse RNA molecules in the cytoplasm to produce ribonucleotides.
  • a particular advantage of such a liposome is that ribonucleotides can be provided for use as flavouring enhancers without the preliminary steps of purifying RNA from a yeast cell lysate, digesting the RNA with the enzyme, and isolating the ribonucleotide products.
  • Other enzymes or compounds capable of forming a compound for providing flavouring to a food or foodstuff, or for providing flavouring to an ingredient for preparing a food or foodstuff may be comprised in the liposome.
  • An example of such an enzyme is 5 '-adenyl deaminase.
  • a further particularly useful liposome of the invention comprises an enzyme for deamination of adenylate to produce a 5'-inosine phosphate nucleotide. Accordingly, the invention provides a liposome characterised in that:
  • -about 40-50 molar % of the liposome lipid bilayer is PC
  • -about 10-20 molar % of the liposome lipid bilayer is DOTAP
  • the liposome lipid bilayer is PE and/or DOPE; wherein the liposome comprises 5 '-adenyl deaminase.
  • the invention provides a process for producing a liposome comprising an enzyme, as described above.
  • the process comprises forming a dispersion of PC, DOPE and/or PE, ergosterol and DOTAP in an organic solvent, drying the dispersion to form dried lipids and redispersing the dried lipids in an aqueous medium comprising the enzyme to form a liposome.
  • a 2 : 1 chloroform-methanol solution is particularly useful as an organic solvent for forming a dispersion of the lipids.
  • the process comprises a further step of isolating liposomes having a diameter of about
  • the invention also provides a process for producing a yeast cell spheroplast or protoplast comprising an enzyme as described above.
  • the process comprises contacting a yeast cell protoplast with a liposome comprising the enzyme, to permit the spheroplast or protoplast to receive the liposome.
  • the inventor has observed that the liposome of the invention is received by a yeast cell spheroplast or protoplast by endocytosis.
  • the yeast cell spheroplast or protoplast and liposome are contacted to permit the spheroplast or protoplast to receive the liposome, or in other words, to endocytose the liposome, at about 37°C.
  • the spheroplast or protoplast and liposome are contacted for endocytosis in a buffer having an osmolarity that is compatible with a yeast cell.
  • the invention provides a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide.
  • the yeast cell is one produced by the process described above.
  • yeast cell comprising an enzyme for deamination of adenylate to form 5'-inosine phosphate nucleotide.
  • the yeast cell is one produced by the process described above.
  • the invention further provides a process for producing a flavouring enhancer in a yeast cell.
  • the process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome and providing conditions for function of the enzyme in the yeast cell by the enzyme of the liposome, to produce the flavouring enhancer.
  • a flavouring enhancer produced by the above described process.
  • the flavouring enhancer produced by the process of the invention is typically a ribonucleotide such as 5'-guanosine monophosphate, 5'-cytosine monophosphate, 5'- adenosine monophosphate or 5'-uracil monophosphate.
  • ribonucleotide is 5'-guanosine monophosphate or 5'-inosine monophosphate.
  • the flavouring enhancer may also be a compound such as monosodium glutamate.
  • the invention provides a food or food stuff, or ingredient for producing a food or food stuff, comprising a flavouring agent or enhancer produced by the above described process.
  • the food or food stuff, or ingredient, or additive for producing a food or food stuff produced by the process of the invention is typically a leavened product or savoury product or beverage produced by fermentation or Malliard reaction, or containing a product from either of these reactions.
  • the invention provides a composition comprising a liposome as described above.
  • Soy phosphatidylcholine (PC), dioleoylphosphatidylethanolamine (DOPE), soy phosphatidylethanolamine (PE), 1 ,2-dioleoyl-5n-glycero-3-trimethylammonium-propane (DOTAP), ergosterol (ERGO), calcein, fluorescein isothiocyanate dextran, (FITC-FD 250S), dextrose, trisma base, ficoll-type 70, fluorinert FC-77, melting point bath oil, I- sucrose-ul-14C, silicone oil AR 200, lyticase and -glucuronidase - type H2 were all obtained from Sigma Aldrich (Castle Hill, Australia), Sepharose CL-4B was obtained from Amersham Biosciences (Castle Hill, NSW).
  • Sorbitol was purchased from Med- Chem (Kew, Vic). Yeast extract and bacterial peptone were purchased from Oxoid Chemicals (Heidelberg, Vic). Saccharomyces cerevisiae (YNN 281) and K. marxianus (FRR 1337) were kindly provided by Food Science Australia (North Ryde NSW). All remaining chemicals and solvents were of HPLC grade.
  • a Buchi rotary evaporator and Heto FD-3 freeze drier were used to initially dry and then remove all traces of organic solvents from the prepared phospholipid films with re hydration occurring in a Braun Certomat WT temperature controlled shaking water bath. Formation of multilamellar vesicles (MLV) was initially undertaken in a Braun
  • the LUVs were separated from any unencapsulated material by gel filtration using an Amersham Pharmacia AKAT gradient processing FPLC system complete with a 900-model monitor, lamp and detector (set at 280nm), 920 model pump and incorporating a Frac 950 fraction collector interfaced to a Compaq Desk Pro Pentium m computer supporting Unicorn analytical software.
  • the column used for the chromatograph was a K9-30 column packed with Sepharose CL 4B beads (45um to 165um) and fitted with two 25um supporting filters.
  • the column was packed using a RK16/26 packing reservoir and filled using a variable speed peristaltic pump.
  • the particle size of the formed LUV liposomes was estimated on a Malvern Mastersizer-X- long bed particle analyser interfaced to an ACO Pentium II computer supporting Mastersizer Version 2.18 analytical software.
  • a Bioline orbital shaker was used to incubate the yeast with washing, pelletising and density separations for cells and protoplasts undertaken on a Beckman J2-H2 centrifuge utilising a fixed head JA 20 rotor as well as a JS-13 swing bucket head rotor specifically for the separation of protoplast.
  • Preparation of standard phospholipid solutions Stock solutions of 20mg/ml were prepared for PC, PE, DOPE, DOTAP and ERGO. They were prepared by dissolving 20mg of each lipid in to 1ml of a 2:1 (v/v) solution of chloroform and methanol which had been filtered through a 0.45um Millipore filter and stored at 4°C until use. Only glass flasks, beakers, syringes and stainless steel needles were used in the preparation of these mixtures to avoid the possible migration of plastic monomers from the dispensing pipette tips or filters which could contaminate and alter the packing configuration of the phosphohpids micelles which could result in premature leakage of the entrapped materials upon storage of the liposome suspension. Preparation of the dried lipid film:
  • the solvents were evaporated under vacuum for 90 minutes at 60rpm in a water bath set at 37°C, which is above the phase transition temperature (Tm°C) for the phosphatidylcholine component thereby ensuring all lipids were in the liquid crystalline phase allowing for a uniform dispersion.
  • the evaporator was also covered in a black plastic film to further ensure a minimal passage of light.
  • the flasks were finally freeze dried at -52°C at O.OOlMbar pressure for 2 hours then re-flushed with nitrogen, sealed and stored at -80°C until required for re hydration. Hydration of the dried lipid film and the encapsulation of a fluorescent dye:
  • the dried phospholipid films were hydrated in a two-stage process to avoid the precipitation or flocculation of the charged cationic lipid DOTAP which is sensitive to millimolar concentration of polyanions such as calcein, phosphate or EDTA as well as the presence of either monovalent or divalent cations in concentrations higher than five millimolar.
  • the separation phenomenon of cationic lipids were observed during our work with the process investigated and corrected during our trials by hydration of the film initially in Milli Q water at 37°C for 30 minutes to initiate the formation of a micelle complex. This was then followed by a 30 minute to 1 hour hydration with the desired encapsulent in an appropriately buffered solution at pH 7.2 to induce a cationic sensitivity onto the liposome.
  • the hydrated lipids were then cyclic frozen and thawed 3 times from -80°C to 37°C in an effort to increase the capture of volume of the fluorescent dye within the lipid bilayers while avoiding the break down of the FITC conjugated dextran.
  • a brief bath sonication for 10 minutes was undertaken to finalise development of the MLVs while reducing any excessive aggregation between the micelles.
  • Each solution was then extruded in an Avestin Lipo fast basic with stabiliser extruder.
  • the Avestin lipofast basic extruder is a hand driven extrusion device with a capacity of 1 millilitre utilising 2 purpose built Hamilton gas tight syringes fitted to a pair of lour locked membrane supports that enclose a polycarbonate filter which is bound within a stainless steel housing .
  • the extruder components Prior to each use, the extruder components are washed in water than with a 2:1 chloroform: methanol solution to remove any residual lipid and rinsed again in Milli Q water and allowed to dry prior to assembly.
  • Our experiment used a 400mn disposable polycarbonate filter that was fitted to the membrane supports with tongs to avoid contamination with ancillary lipids.
  • the extruder and the flasks containing the MLVs were immersed in a water bath at 37°C to preheat the apparatus and ensure the lipids were in a liquid crystalline state ensuring an easier passage through the extruder.
  • the solutions were passed through the extruder in a forward and backward motion 23 times to achieve a uniform homogenous dispersion of LUVs. For each extrusion it was important to finish the procedure in the opposite syringe to avoid the re suspension of any trapped material which may be present on the filter during the first pass.
  • the solutions, which became clearer on repeated extrusions were filled into 2ml pre sterilised eppendorf tubes which were covered in aluminium foil and stored at 4°C prior to gel filtration.
  • the buffer for gel filtration consisted of a 1M sorbitol, lOOmM potassium chloride, 25mM trisma base and lOOuM magnesium chloride adjusted to ph 7.2.
  • the buffer Prior to use, the buffer was filtered and degassed under vacuum for 10 minutes and prepared in Milli Q water. After filtration, the buffer was also boiled to remove any remaining air and held in a jacketed bath at 37°C to ensure the lipids were in a liquid phase during the filtration.
  • the requirements for removing trapped air from the buffer prior to its use was to increasing the degree of separation between the liposomes and the free dye by avoiding the compression of the soft Sepharose packing beads.
  • the column Prior to use, the column was equilibrated with three volumes of buffer to remove any residual ethanol or sodium azide wliich was used as a preservative within the FPLC lines and the Sepharose packed column, while not in use the columns were stored in the refrigerator at 4°C.
  • the separation protocol used a flow rate of 0.5ml/min and two millilitres of liposome suspension were injected into the column and an elution efficiency of 95%.
  • the process volume used was 79mls and the process time was 197 minutes.
  • Example 3 Creation and confirmation of competent yeast protoplasts
  • yeast protoplasts For the production of yeast protoplasts, a freeze-dried culture of Saccharomyces cerevisiae (YNN 281) was recussitated and then propagated for 20 hours at 30°C in a temperature controlled shaker set at 120rpm and grown in a sterilised YEPD media containing 1.5% (w/v) yeast extract, 2.0% (w/v) bacterial peptone and 2.0% (w/v) dextrose adjusted to pH 6.5. After incubation, the yeast cells were washed twice in an osmotically stabilised solution containing 0.65M potassium chloride, 25mM Trisma base and lOOuM magnesium chloride adjusted to pH 6.5.
  • the concentration requirement for this suspension protocol is based on an understanding of the intracellular osmotic pressure and concentration of resting yeast from the genus Saccharomyces cerevisiae as defined using freezing point depression data. Centrifugation of the harvested cells were undertaken at 4°C in a Beckman J2 H2 centrigue at 10,000rpm for 15 minutes.
  • the porosity and lipid content of the yeast plasma membrane can be altered for a facilitated endocytotic transport of higher molecular weight compounds if the conditions for time, temperature or pH are manipulated or the solutes in the supporting media were modified to enhance lipid membrane growth.
  • a five-tier density gradient was then constructed in Falcon tubes to isolate protoplasts from intact cells and cell wall remnants in the range of 1.04g/l to l.lOg/l.
  • Each solution comprised sorbital from 0.65M to IM in concentration, 25mM of trisma base, lOOuM of magnesium chloride and either 5 or 10% Ficoll in the densest fractions.
  • Each solution was stabilised to pH 7.2 and a total of 5 ml of each solution was layered into the falcon tubes beginning with the densest fraction and finishing with the yeast - enzyme digest. The tubes were then capped and place in the Beckman centrifuge and spun for 15 minutes at lOOOrpm and 4°C to isolate the protoplasts.
  • the yeast cells were grown on a modified YEPD media in which the 2% (w/v) dextrose was replaced by 4% (w/v) sucrose as the carbon source to facilitate a mechanism for the absorption and transport of the sucrose C14 by the yeast cells.
  • Protoplasts were formed as described above and isolated again utilising a sorbitol based density gradient. Silicon oil isolation of protoplasts is a convenient method for separating radio labelled cells from a sugar gradient solution. In this procedure cells are incubated in a radioactive solution for a specified period of up to 1 hour as seen in our trials and then spun through silicon oil at a specific density to separate them from scintillation counting.
  • a 20ul sample of the incubated suspension was applied to a microscope slide with the edges of the cover slip sealed with an acrylic resin to inhibit drying out of the sample.
  • the slides once made were stored in the dark to reduce the risk of a loss in fluorescence of the FITC conjugate and viewed immediately under phase contrast and fluorescence using the confocal microscope.
  • the technique used for preparing sections of block-mounted cells for image analysis required 0.5ml of the protoplast-liposome suspension to be fixed with 50ul of
  • Example 5 Production and use of a liposome comprising 5 '-phosphodiesterase
  • Barley rootlets are macerated in a Waring blender.
  • the resulting solution is then filtered through a cheese cloth and spun at 10,000 rpm at 4°C for 20 minutes to remove the root debris.
  • the supernatant is removed and heated for 1 hour at 60°C.
  • the solution is again spun at 10,000 rpm and 4°C for 20 minutes and the supernatant collected and desalted in a Hitrap 26/10 desalting column on an FPLC.
  • the desalted solution is passed through an anionic exchange using a High Prep 16/10 column and active fractions collected, desalted and then passed through a Mono Q column.
  • the single purified enzyme is then concentrated on a ultrafiltration membrane by centrifugation through an Amicon Ultra 4 membrane with a 30,000 wt cut off at 4°C and 7,500xg for 8 minutes.
  • Liposomes are then formed by a process of solvent evaporation and freeze drying to produce a thin film of phosphohpids in the desired concentration of PC 50%, DOPE 30%, DOTAP 10%, and Ergosterol 10%.
  • the films are hydrated first in Milli Q water and then in the desalted enzyme solution containing an osmotically stabilised buffer of 0.65M sorbitol to ensure the 5 '-phosphodiesterase will not become inactive on freezing and thawing.
  • the formed multilamellar vesicles are briefly sonicated for 2 minutes in a bath sonicator to reduce aggregation and continue the formation of large liposomes and then frozen and thawed 3 times to increase the capture potential of the liposomes.
  • liposomes are then extruded through an Avestin 400nm pore size filter extruder with large unilamellar vesicles containing the enzymes isolated by gel filtration on the FPLC using a Sepharose CL 4B filled 30cm by 1cm column.
  • the enzyme bound liposomes are then concentrated again on the Amicon Ultra 4 centrifuge tube and stored at 4°C until required.
  • Protoplasts and spheroplasts are prepared as described above.
  • the protoplasts are then concentrated by centrifugation on a Millipore Ultra Free CL 5 ⁇ m membrane tube for 50 minutes at ambient temperature and 900 rpm after a 1 :4 dilution in the 1.03g/l gradient buffer is undertaken to aid centrifugation.
  • the concentrated protoplasts are then combined 50:50 with the concentrated enzyme bound liposome in an eppendorf tube and incubated in a shaking water bath at 37°C for 90 minutes to effect the transfection of the liposomes and to facilitate the release of the bound enzyme.
  • the mixture of cells is then lysed on a French press and the cell wall material spun down at 10,000 rpm and 4°C for 20 minutes and the supernatant collected and frozen to retard any further reaction of the released enzyme.
  • the 5' ribonucleotides in solution are then measured by RPHPLC against an incubated yeast protoplast suspension without the addition of the enzyme bound liposomes and the values compared.
  • phosphohpids PE and PC into the primary matrix of a liposome.
  • DOTAP a charged amphiphile
  • Ergosterol was used to facilitate an easier lipid exchange between the yeast cell wall and the liposome.
  • Additional compounds have also been built in to the liposome structure to facilitate a controlled release of the encapsulated material and are based on PE and its derivative DOPE which contain a unique high degree of unsaturated fatty acids.
  • PE was used with DOPE in the release mechanism for our liposomes, it has a smaller head group compared to PC and is inherently cone shaped and prone to forming hexagonal shaped, inverted micelles in solution particularly at a lower pH.
  • the presence of PE and particularly DOPE with two unsaturated oleic groups provides for a higher membrane curvature within the liposome that leads to a faster facilitated release of the encapsulated material and as such was incorporated to operate as the trigger release compound within the formula.
  • Multilamellar vesicles which contain 2 or more concentric lamellae arranged in an onion skin configuration and can range in size form lum to ⁇ 100um
  • Large Unilamellar Vesicles which have a single bilayer and size distribution in the range of 200um to lum
  • Small Unilamellar Vesicles which are less than 200nm in size.
  • LUV Large Unilamellar Vesicles
  • Probe or bath sonication is a time consuming process that produces liposomes of unequal size and capture potential and in the case of probe sonication produces only a small volume of suspension which needs to be cooled in ice water to remove the heat generated from the tip of the probe.
  • This process is not scalable or adaptable to the encapsulation of enzymes as the heat generated and the requirement to remove titanium fragments from the liposome suspension would result in the inactivation the enzymes to be encapsulated.
  • a dehydration-rehydration procedure can also be adopted and is scalable to lOOlts volumes but is also variable in the capture potential.
  • Reverse Phase solvent evaporation Ethanol Injection detergent dialysis can also be applied but the drawback of each of these protocols while currently used by many researchers, exposures our enzyme to either organic solvents or detergents which will significantly reduce its activity.
  • the detergent removal procedure particularly requires exhaustive dialysis to remove the surfactants and would be prohibitively expensive for the food industry.
  • Micro fluidisation has also be used to prepare vesicles as can a French Press, but again enzyme denaturation by shear forces would make these procedures unacceptable.
  • the size of the formed liposomes was tailored to ⁇ 400nm with the action of the extruder reducing the risk of denaturing enzymes or conjugates as well as fouling the membranes.
  • the filter used were a 400mm filter although a 200nm filter was later evaluated to increase the percentage of small LUV for easier migration across the lipid membrane of the cell.
  • the polycarbonate membranes used for the extrusion are produced by a combination laser and chemical etching process, which aims to produce straight- sided pore holes of exact diameter.
  • the extrusion procedure produced LUVs of a uniform, defined size as determined by the Malvern Mastersizer S, and confirmed by Transmission Electron Micrographs. The average size was 0.36 of a micron.
  • the process of gel filtration was used to fractionate the formed liposomes from the solution containing the unencapsulated dye.
  • the successful separation of the cationic liposomes required an understanding of the principles of separation based on a differential size of the materials and the capability to pack an efficient gel filtration column.
  • Sepharose CL 4B was the packing material used for the separation and is a bead- formed agarose which is derived from agar and cross-linked by reaction with 2,3 di- bromopropanol under alkaline conditions.
  • Sepharose CL 4B chosen because it is in the middle of the separation range for Sepharose and has a smaller bead size within its bottom range which facilitates a faster movement of larger molecular weight components. It has an optimum separation range between 70 x 10 2 - 20 x 10 2 and a bead size in the range of 45 to 165um.
  • the filters for the column were chosen specifically to be 25um to ensure the smaller size beads within the column would remain and the liposomes would separated and not become lodged on to the top of the column filter restricting the flow and hindering the separation as seen when early columns were used for our trials.
  • the conventional filters were identified to be 2um in size causing fouling and restricted the entry of the large liposomes into the column, prohibiting their isolation.
  • the separation buffer used in the trials was chosen because it could osmotically support the formed protoplasts when combined with the later liposomes for endocytosis studies and identified during the gradient separations for the formed protoplasts. Separation of liposomes from gel filtration was identified by two eluent peaks on the chromotograph in with the milky suspension containing the liposomes exiting the column first as a function of its molecular size and confirming by TEM images, negatively staining on carbon coated grids with 2.0% (w/v) solutions of sodium phosphotungstate adjusted to pH 7.0
  • Protoplasts were prepared according to standard techniques. A three-hour incubation was undertaken with post centrifugation to isolate the protoplasts performed at lOOOrpm for 15minutes at 4°C. Protoplasts were found primarily in the third layer of the falcon tube with the solution having a density of 1.07g/l. This buffer concentration was then used as the separation solution for all gel filtration experiments. Protoplasts were identified by phase contract and TEM microscopy with remnants of cell wall present and captured. It was observed during the confocal and TEM microscopy that remnants of the cell wall containing the negatively charged proteins formed clusters with the DOTAP liposomes particularly at the 20 molar % concentration.
  • Movement of solutes across the membrane can be undertaken in a number of ways, depending on the size and the charge of the solutes by the process of either diffusion or adsorption. Fusion, inter membrane transfer and exchange of lipids (between liposomes and cell membranes) results in the facilitated uptake of the large molecular compounds by cells with their delivery into early endosomes. The uptake process occurs by the action of either phagocytosis but usually endocytosis and requires solutes to be encapsulation in a micelle with an opposite surface charge to that of the cell.
  • an initial coalescence of liposomes with a cell's plasma membrane occurs when the cell's surface proteins or enzymes that are negatively charged bind to a positive charge that has been applied onto the liposome with the further possible addition of stabilising cations, antibodies or Proplylene Glycol to ensure protection and correct orientation of the functionally active enzymes bound to the cells surface.
  • the liposome Once fixed to the surface of the cell, the liposome becomes enveloped by the plasma membrane.
  • the liposome Once brought into the cell, the liposome resides in an early endosome.
  • the main release mechanism as identified in our work was the PE and DOPE components which contained Oleic acid as identified by the fluorescence seen within the cells with the use of formulas 4, 5, 11 and 12. Table 2.
  • DOPE particularly provides for a greater release of the bound conjugated dextran compared to the liposomes containing phosphatidylethanolamine, however both work to various degrees.
  • the cationic liposomes which are formed at a higher pH than the target cell's cytoplasmic pH are capable of fusing and entering a cells cytoplasm.
  • a trigger release mechanism incorporating phosphatidylethanolamine is important for the release of the components bound within the liposome however PE alone can also still provide a controlled release of the liposomal contents if the temperature and time of incubation is increased.

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Abstract

A liposome for fusing with a yeast cell, the liposome characterised in that about 40-50 molar % of the liposome lipid bilayer is phosphatidyl choline (PC), about 10-20 molar % of the liposome lipid bilayer is a cationic amphiphile, about 10 molar % of the liposome lipid bilayer is a sterol and about 30 molar % of the liposome lipid bilayer is phosphatidyl ethanolamine (PE) and/or dioleoylphosphatidylethanolamine (DOPE).

Description

Yeast treatment
Field of the invention
The invention relates to liposomes for introducing a molecule into a cell, to processes for making and using liposomes, to yeast cells, including yeast cells for providing flavouring agents and enhancers for foods and foodstuffs, and to processes for making and using yeast cells.
Background of the invention
Yeast species such as those in the genera Kluyveromyces and Saccharomyces have a number of uses in the food and beverage industries such as, for example, for providing fermentation products and for providing flavouring enhancers.
There is a demand for new and improved strains of yeasts in these industries and presently, such strains are provided either by culturing and selecting a strain according to a particular phenotype, or by using recombinant DNA technology to introduce one or more genes into a cell to provide the particular phenotype. Although such processes are useful for generating yeast strains, certain limitations apply to the suitability of these processes for this purpose. For example, culturing and selecting a strain according to a particular phenotype is time consuming, expensive and does not allow one to create a desired phenotype. Recombinant DNA technology allows one to create a phenotype, however yeast cells produced by these technologies are typically recognised as genetically modified organisms, and this often has deleterious consequences for products produced from such organisms.
Often, the critical factor for providing the desired effector function, and accordingly, the useful phenotype in a new yeast strain, is the action of one or more macromolecules such as proteins. Accordingly, it would be advantageous if one were able to transfect, or in other words, to introduce macromolecules such as proteins into a yeast cell to provide the desired phenotype, as this would avoid the limitations of culture and selection techniques, and also the techniques based on recombinant DNA technology. One way of transfecting macromolecules such as proteins into cells is to use liposomes. A liposome is a structure comprising one or more concentric spheres of a lipid bilayer that enclose an aqueous compartment. To date, it has not been possible to generate a liposome that is capable of transfecting a macromolecule, such as an active enzyme, into a yeast cell.
Flavouring agents or enhancers, specifically, ribonucleotides and monosodium glutamate, are typically produced from yeast cells according to the following process. First, yeast cells are lysed to release one or more fractions containing RNA. Second, the fractions containing RNA are contacted with 5'-phosphodiesterase to produce ribonucleotides. Finally, the fractions are heated to prevent further degradation of the ribonucleotides. These processes are often expensive, are time consuming and requiring technical expertise, and are notorious for producing a product with low market value.
Further, ribonucleotides are conventionally used as a flavouring enhancer by adding the ribonucleotides as an ingredient to a mixture for preparing a food or foodstuff. One disadvantage of this is that in some circumstances, the ribonucleotide must be disclosed on a label for a food product as an additive. This has consequences for the market value of the food product.
In view of the above, there is a need for improvements in yeast cells, including yeast cells for providing flavouring enhancers. Summary of the invention
The invention seeks to at least minimise one or more of the above identified problems or limitations and/or to provide improvements in yeast cells, especially yeast cells for use in providing flavouring enhancers. hi one aspect, the invention provides a liposome for fusing with a yeast cell. The liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is phosphatidyl choline (PC), about 10-20 molar % of the liposome lipid bilayer is a cationic amphiphile, about 10 molar % of the liposome lipid bilayer is a sterol and about 30 molar % of the liposome lipid bilayer is phosphatidyl ethanolamine (PE) and/or dioleoylphosphatidylethanolamine (DOPE). hi another aspect, the invention provides a process for preparing a yeast cell for fusion with a liposome. The process comprises treating the yeast cell to form a yeast cell spheroplast or protoplast.
In another aspect, the invention provides a process for introducing an exogenous molecule into a yeast cell. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the exogenous molecule in conditions for permitting the spheroplast or protoplast to receive the liposome. Typically the liposome for use in the process is as described above.
In another aspect, the invention provides a process for producing a yeast cell comprising an exogenous molecule. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the exogenous molecule in conditions for permitting the spheroplast or protoplast to receive the liposome. Typically the liposome for use in the process is as described above.
In another aspect, the invention provides a yeast cell produced by the above described process.
In another aspect, the invention provides a use of a yeast cell as described above for producing a food, foodstuff, additive, or an ingredient for producing a food or foodstuff.
In another aspect, the invention provides a food, food stuff, additive, or ingredient for production of a food or food stuff, produced by a yeast cell according to the invention. h another aspect, the invention provides a liposome capable of fusing with a yeast cell. The liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is PC, about 10-20 molar % of the liposome lipid bilayer is l,2-dioleoyl-,s7i- glycero-3-trimethylammonium-propane (DOTAP), about 10 molar % of the liposome lipid bilayer is ergosterol and about 30 molar % of the liposome lipid bilayer is PE and/or DOPE. The liposome further comprises an enzyme for hydrolysing a RNA molecule to form a ribonucleotide in a yeast cell.
In another aspect, the invention provides a liposome capable of fusing with a yeast cell. The liposome is characterised in that about 40-50 molar % of the liposome lipid bilayer is PC, about 10-20 molar % of the liposome lipid bilayer is DOTAP, about 10 molar % of the liposome lipid bilayer is ergosterol and about 30 molar % of the liposome lipid bilayer is PE and/or DOPE. The liposome further comprises an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide. In another aspect, the invention provides a process for producing a liposome comprising an enzyme, as described above. The process comprises forming a dispersion of PC, DOPE and/or PE, ergosterol and DOTAP in an organic solvent, drying the dispersion to form dried lipids and redispersing the dried lipids in an aqueous medium comprising the enzyme to form a liposome. In another aspect, the invention provides a process for producing a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome. In another aspect, the invention provides a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide. The yeast cell is one produced by the process described above. hi another aspect, the invention provides a process for producing a yeast cell comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome.
In another aspect, the invention provides a yeast cell comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide. In another aspect, the invention provides a process for producing a flavour enhancer in a yeast cell. The process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme for hydrolysis of an RNA molecule to form a ribonucleotide, in conditions for permitting the spheroplast or protoplast to receive the liposome and providing conditions for permitting hydrolysis of an RNA molecule in a yeast cell by the enzyme of the liposome, to produce the flavour enhancer.
In another aspect, the invention provides a process for producing a flavour enhancer in a yeast cell. The process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleotide, in conditions for peπnitting the spheroplast or protoplast to receive the liposome and providing conditions for permitting deamination of an adenylate in a yeast cell by the enzyme of the liposome, to produce the flavour enhancer. In another aspect, the invention provides a flavour enhancer produced by the above described processes. another aspect, the invention provides a food or food stuff, additive or ingredient for producing a food or food stuff, comprising a flavour enhancer produced by the above described processes. In another aspect, the invention provides a composition comprising a liposome described above.
Detailed description of the embodiments
As described herein, the inventor has produced a liposome that is capable of fusing with a yeast cell and, importantly, capable of transferring a molecule contained by the liposome to a yeast cell cytoplasm to permit the molecule to perform an intended function in the yeast cell. Accordingly, the invention provides a liposome characterised in that:
-about 40-50 molar % of the liposome lipid bilayer is PC;
-about 10-20 molar % of the liposome lipid bilayer is cationic amphiphile; -about 10 molar % of the liposome lipid bilayer is sterol; and
-about 30 molar % of the liposome lipid bilayer is PE and/or DOPE.
In one embodiment, about 50 molar % of the liposome lipid bilayer is PC. h another embodiment, about 20 molar % of the liposome lipid bilayer is cationic amphiphile. hi another embodiment, about 30 molar % of the liposome lipid bilayer is DOPE. In another embodiment, about 30 molar % of the liposome lipid bilayer is PE.
Typically, the sterol is ergosterol, or a molecule with a similar structure for example, cholesterol. Steryl amine or DOTAP are particularly useful in the liposome of the invention as a cationic amphiphile.
The liposome lipid bilayer may further comprise oleic acid, hi one embodiment, about 5 molar % of the liposome lipid bilayer is oleic acid. Typically, where the liposome lipid bilayer further comprises oleic acid, less than 30 molar % of the liposome lipid bilayer is PE and/or DOPE.
The following liposomes are particularly useful for fusion with, and transfer of a macromolecule contained by the liposome to a yeast cell:
(a) a liposome characterised in that:
-about 50 molar % of the liposome lipid bilayer is PC; -about 30 molar % of the liposome lipid bilayer is DOPE;
-about 10 molar % of the liposome lipid bilayer is DOTAP; and -about 10 molar % of the liposome lipid bilayer is ergosterol.
(b) a liposome characterised in that:
-about 40 molar % of the liposome lipid bilayer is PC; -about 30 molar % of the liposome lipid bilayer is DOPE;
-about 20 molar % of the liposome lipid bilayer is DOTAP; and -about 10 molar % of the liposome lipid bilayer is ergosterol.
(c) a liposome characterised in that:
-about 50 molar % of the liposome lipid bilayer is PC; -about 30 molar % of the liposome lipid bilayer is PE
-about 10 molar % of the liposome lipid bilayer is DOTAP; and -about 10 molar % of the liposome lipid bilayer is ergosterol.
(d) a liposome characterised in that:
-about 40 molar % of the liposome lipid bilayer is PC;
-about 30 molar % of the liposome lipid bilayer is PE; -about 20 molar % of the liposome lipid bilayer is DOTAP; and
-about 10 molar % of the liposome lipid bilayer is ergosterol.
Typically, the liposome of the invention further comprises a molecule to be introduced into a yeast cell. The molecule is contained by the liposome, in the sense that it may be encapsulated by the liposome; i.e. it may be confined within an aqueous compartment that is defined by the liposome lipid bilayer. Alternatively, the molecule may be embedded in the lipid bilayer and/or may protrude into the aqueous compartment defined by the bilayer and/or protrude from the surface of the liposome lipid bilayer for contact with the yeast cell.
The molecule further comprised by the liposome is an "exogenous molecule", in the sense that it is one that has not been produced by, or derived or obtained from the yeast cell to which the molecule is to be transferred. Accordingly, synthetically or artificially produced molecules, including those not found in nature, and molecules produced by cells other than yeast cells are exogenous molecules.
It will be understood however that an exogenous molecule may be identical to a molecule that is produced by a yeast cell. For example, a 5' phosphodiesterase that is obtained from a yeast cell is an exogenous molecule to a yeast cell to which the enzyme is to be transferred in the circumstance that the enzyme was not produced by or obtained from that yeast cell.
It will be understood that the molecule further comprised in the liposome can be any molecule that is capable of being contained by a liposome and that would impart a desirable effect to a yeast cell. Examples of such molecules are those useful for producing fermentation products such as proteins, particularly, enzymes, amino acids, nucleic acids, sugars, organic compounds and mono sodium glutamate. Further, it will be understood that in particular circumstances, the above described liposome may not comprise a molecule to be introduced to a yeast cell. More specifically, in some circumstances, it is recognised that the liposome has particular utility as a surface for reaction of one or more substrates, hi such circumstances, the liposome of the invention is not provided with a further molecule to be introduced into a yeast cell.
As described herein, it is believed that the liposome of the invention transfers, or in other words, introduces a molecule contained by the liposome to the yeast cell by endocytosis. Accordingly, typically the liposome has a diameter for permitting endocytosis of the liposome by a yeast cell. A suitable diameter for the liposome is between 100 and 400 nm and a particularly useful liposome is one having a diameter between 200 and 400 nm.
It is believed that destabilisation of the liposome lipid bilayer is an important step in the process by which the liposome fuses with an endosomal bilayer of the yeast cell, leading to transfer of a molecule that may be contained by a liposome to the yeast cell. One approach for causing destabilisation of the liposome lipid bilayer is to adapt the liposome so that the lipid bilayer is sensitive to fluctuations in pH. Typically, the liposome of the invention is adapted for destabilisation of the liposome lipid bilayers at the pH of a yeast endosome. A liposome comprising lipid bilayers adapted for destabilisation at a pH of about 5.0 to 6.0 is particularly useful. In experiments leading to the invention, the inventor recognised that certain manipulations of a yeast cell may be particularly useful for enabling fusion of the liposome with the yeast cell, for example, for transfer of a molecule contained by the liposome to the yeast cell. More particularly, the inventor recognised that certain molecules, including α (1-6) and (1-3) mannan (yeast gum)/ protein complexes and β (1- 6) and (1-3) glucan (yeast cellulose)/protein complex with a chitin backbone would need to be removed at least in part from the yeast cell, to form a yeast cell spheroplast, or removed more substantially, to form a yeast cell protoplast. As described herein, the outer lipid membrane of a yeast cell protoplast, otherwise known as the plasmalemma or plasma membrane contains primarily proteins, sterols, sphingolipids and phospholipids. The plasmalemma is sufficient for providing a barrier for regulation of transport of molecular species into and out of the yeast cell. Surprisingly, the inventor has found that the treatment described herein is sufficient for at least partial removal of yeast gum and yeast cellulose and yet is sufficiently sensitive to provide viable yeast cell spheroplasts or protoplasts that are capable of endocytosis of the liposome of the invention. Thus, the invention provides a process for preparing a yeast cell for fusion with a liposome comprising the step of treating the yeast cell to form a yeast cell spheroplast, or a yeast cell protoplast.
Typically, the yeast cell is treated to form a yeast cell spheroplast or protoplast by contacting the yeast cell with one or more enzymes for at least partial digestion of yeast gum and yeast cellulose. Lyticase and β-glucuronidase are particularly suitable enzymes for this purpose. In one embodiment, the process comprises the further step of isolating a spheroplast or protoplast. A density gradient is particularly useful for this purpose. Typically, the yeast cells for treatment in the process to produce the yeast cell spheroplasts or protoplasts are cells existing in the exponential growth phase. In one embodiment, before treatment of the yeast cells to form a yeast cell spheroplast or protoplast, the yeast cells are washed to remove culture media from the yeast cells.
The invention provides a process for introducing an exogenous molecule into a yeast cell spheroplast or protoplast. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule in conditions for permitting the spheroplast or protoplast to receive the liposome. Typically the liposome for use in the process is as described above.
As described herein, the inventor has observed that the liposome of the invention is received by a yeast cell spheroplast or protoplast by endocytosis. Typically, the yeast cell spheroplast or protoplast and liposome are contacted to permit the spheroplast or protoplast to receive the liposome, or in other words, to endocytose the liposome, at about 37°C. As described herein, the spheroplast or protoplast and liposome may be contacted for endocytosis in a buffer having an osmolarity compatible for a yeast cell.
The invention provides a process for producing a yeast cell spheroplast or protoplast comprising an exogenous molecule. The process comprises contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule to permit the spheroplast or protoplast to receive the liposome. Typically the liposome for use in the process is as described above.
The yeast cell spheroplast or protoplast and liposome may be contacted for peπnitting the spheroplast or protoplast to receive the liposome, according to the conditions described above. In one embodiment, the process comprises the further step of culturing a yeast cell spheroplast or protoplast comprising the exogenous molecule to provide a yeast cell.
The invention provides a yeast cell, spheroplast or protoplast produced by the above described process. Particularly suitable cells, spheroplasts and protoplasts for use in the above described processes are of genera Kluyveriomyces and Saccharomyces.
The invention also provides a use of a yeast cell as described above for producing a food, foodstuff, additive or an ingredient for producing a food or foodstuff. In one embodiment, the use of the yeast cell is a process comprising the step of contacting the yeast cell with a composition to produce a food, food stuff, additive or an ingredient for producing a food or food stuff.
Also provided is a food, food stuff, additive, or ingredient for production of a food or food stuff, produced by a yeast cell according to the invention. Typically, the food, food stuff, additive or ingredient for production of a food or food stuff, is a product produced by fermentation or Malliard reaction. Examples include products that contain hydrolysed vegetable protein.
A particularly useful liposome of the invention comprises an enzyme for hydrolysing RNA molecules in a yeast cell to produce 5 '-ribonucleotides. Accordingly, the invention provides a liposome characterised in that:
-about 40-50 molar % of the liposome lipid bilayer is PC, -about 10-20 molar % of the liposome lipid bilayer is DOTAP,
-about 10 molar % of the liposome lipid bilayer is ergosterol and
-about 30 molar % of the liposome lipid bilayer is PE and/or DOPE; wherein the liposome comprises 5"phoshpodiesterase. This liposome is particularly useful, because as described further herein, such a liposome can transfect a 5 '-phosphodiesterase into a yeast cell to permit the 5'- phosphodiesterase to hydrolyse RNA molecules in the cytoplasm to produce ribonucleotides. Accordingly, a particular advantage of such a liposome is that ribonucleotides can be provided for use as flavouring enhancers without the preliminary steps of purifying RNA from a yeast cell lysate, digesting the RNA with the enzyme, and isolating the ribonucleotide products. Other enzymes or compounds capable of forming a compound for providing flavouring to a food or foodstuff, or for providing flavouring to an ingredient for preparing a food or foodstuff may be comprised in the liposome. An example of such an enzyme is 5 '-adenyl deaminase.
A further particularly useful liposome of the invention comprises an enzyme for deamination of adenylate to produce a 5'-inosine phosphate nucleotide. Accordingly, the invention provides a liposome characterised in that:
-about 40-50 molar % of the liposome lipid bilayer is PC, -about 10-20 molar % of the liposome lipid bilayer is DOTAP,
-about 10 molar % of the liposome lipid bilayer is ergosterol and
-about 30 molar % of the liposome lipid bilayer is PE and/or DOPE; wherein the liposome comprises 5 '-adenyl deaminase.
The invention provides a process for producing a liposome comprising an enzyme, as described above. The process comprises forming a dispersion of PC, DOPE and/or PE, ergosterol and DOTAP in an organic solvent, drying the dispersion to form dried lipids and redispersing the dried lipids in an aqueous medium comprising the enzyme to form a liposome. As described herein, a 2 : 1 chloroform-methanol solution is particularly useful as an organic solvent for forming a dispersion of the lipids. Typically, the process comprises a further step of isolating liposomes having a diameter of about
400 nanometres.
The invention also provides a process for producing a yeast cell spheroplast or protoplast comprising an enzyme as described above. The process comprises contacting a yeast cell protoplast with a liposome comprising the enzyme, to permit the spheroplast or protoplast to receive the liposome. As described herein, the inventor has observed that the liposome of the invention is received by a yeast cell spheroplast or protoplast by endocytosis. Typically, the yeast cell spheroplast or protoplast and liposome are contacted to permit the spheroplast or protoplast to receive the liposome, or in other words, to endocytose the liposome, at about 37°C. As described herein, the spheroplast or protoplast and liposome are contacted for endocytosis in a buffer having an osmolarity that is compatible with a yeast cell.
The invention provides a yeast cell comprising an enzyme for hydrolysing a RNA molecule to form a ribonucleotide. The yeast cell is one produced by the process described above.
Also provided is a yeast cell comprising an enzyme for deamination of adenylate to form 5'-inosine phosphate nucleotide. The yeast cell is one produced by the process described above.
The invention further provides a process for producing a flavouring enhancer in a yeast cell. The process comprises treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome comprising an enzyme as described above, to permit the spheroplast or protoplast to receive the liposome and providing conditions for function of the enzyme in the yeast cell by the enzyme of the liposome, to produce the flavouring enhancer. Also provided is a flavouring enhancer produced by the above described process.
The flavouring enhancer produced by the process of the invention is typically a ribonucleotide such as 5'-guanosine monophosphate, 5'-cytosine monophosphate, 5'- adenosine monophosphate or 5'-uracil monophosphate. Preferably the ribonucleotide is 5'-guanosine monophosphate or 5'-inosine monophosphate. The flavouring enhancer may also be a compound such as monosodium glutamate.
The invention provides a food or food stuff, or ingredient for producing a food or food stuff, comprising a flavouring agent or enhancer produced by the above described process. The food or food stuff, or ingredient, or additive for producing a food or food stuff produced by the process of the invention is typically a leavened product or savoury product or beverage produced by fermentation or Malliard reaction, or containing a product from either of these reactions.
The invention provides a composition comprising a liposome as described above.
Examples Example 1 : Materials & Equipment
Soy phosphatidylcholine (PC), dioleoylphosphatidylethanolamine (DOPE), soy phosphatidylethanolamine (PE), 1 ,2-dioleoyl-5n-glycero-3-trimethylammonium-propane (DOTAP), ergosterol (ERGO), calcein, fluorescein isothiocyanate dextran, (FITC-FD 250S), dextrose, trisma base, ficoll-type 70, fluorinert FC-77, melting point bath oil, I- sucrose-ul-14C, silicone oil AR 200, lyticase and -glucuronidase - type H2 were all obtained from Sigma Aldrich (Castle Hill, Australia), Sepharose CL-4B was obtained from Amersham Biosciences (Castle Hill, NSW). Sorbitol was purchased from Med- Chem (Kew, Vic). Yeast extract and bacterial peptone were purchased from Oxoid Chemicals (Heidelberg, Vic). Saccharomyces cerevisiae (YNN 281) and K. marxianus (FRR 1337) were kindly provided by Food Science Australia (North Ryde NSW). All remaining chemicals and solvents were of HPLC grade.
A Buchi rotary evaporator and Heto FD-3 freeze drier were used to initially dry and then remove all traces of organic solvents from the prepared phospholipid films with re hydration occurring in a Braun Certomat WT temperature controlled shaking water bath. Formation of multilamellar vesicles (MLV) was initially undertaken in a Braun
1200 bath sonicator with the addition of 2mm glass beads to aid in the removal of the dried lipid from the walls of the flask. Size reduction of the liposomes from MLVs to large unilamellar vesicles (LUV) was undertaken in an Avestin Lipo-fast basic with stabiliser extruder incorporating 400nm polycarbonate membrane filters after a series of cyclic freezing and thawing steps in the range of -80°C to 40°C utilising a laboratory freezer and a heated water bath. This step aimed to increase the capture volume with the formed liposome. The LUVs were separated from any unencapsulated material by gel filtration using an Amersham Pharmacia AKAT gradient processing FPLC system complete with a 900-model monitor, lamp and detector (set at 280nm), 920 model pump and incorporating a Frac 950 fraction collector interfaced to a Compaq Desk Pro Pentium m computer supporting Unicorn analytical software. The column used for the chromatograph was a K9-30 column packed with Sepharose CL 4B beads (45um to 165um) and fitted with two 25um supporting filters. The column was packed using a RK16/26 packing reservoir and filled using a variable speed peristaltic pump. The particle size of the formed LUV liposomes was estimated on a Malvern Mastersizer-X- long bed particle analyser interfaced to an ACO Pentium II computer supporting Mastersizer Version 2.18 analytical software. A Bioline orbital shaker was used to incubate the yeast with washing, pelletising and density separations for cells and protoplasts undertaken on a Beckman J2-H2 centrifuge utilising a fixed head JA 20 rotor as well as a JS-13 swing bucket head rotor specifically for the separation of protoplast.
Confirmation of protoplast viability was undertaken by C 14- sucrose uptake measured on a Packard 1600TR liquid scintillation analyser after pelletising the protoplasts on a Beckman 152 microfuge through a silicon oil gradient.
Confirmation . of fluorescent endocytosis was undertaken on a Leica TCS-4D Confocal Microscope fitted with a Krypton- Argon mixed gas laser set at an excitation wavelength of 488nm which was interfaced to a Dell Pentium 2 computer supporting Leica Scan-ware imaging software. Detailed cell imaging to identify the position of liposomes within the cytoplasm and plasma membrane was undertaken on a Philips CM 100 Transmission Electron Microscope with images captured on a Gatan Dual Vision Digital camera.
Example 2 : Creation of Liposomes
Glassware:
Prior to use in the trials all glassware was washed in a phosphate free detergent followed by immersion in 5M nitric acid and rinsed in Milli Q water to remove any trace of residual proteinaceous material, lipid or salt in an effort to avoid unwanted oxidation of the phospholipids or the possible insertion of any extraneous materials into the formed lipid bilayers which would change the charge or packing density of the created lipsomes.
Preparation of standard phospholipid solutions: Stock solutions of 20mg/ml were prepared for PC, PE, DOPE, DOTAP and ERGO. They were prepared by dissolving 20mg of each lipid in to 1ml of a 2:1 (v/v) solution of chloroform and methanol which had been filtered through a 0.45um Millipore filter and stored at 4°C until use. Only glass flasks, beakers, syringes and stainless steel needles were used in the preparation of these mixtures to avoid the possible migration of plastic monomers from the dispensing pipette tips or filters which could contaminate and alter the packing configuration of the phosphohpids micelles which could result in premature leakage of the entrapped materials upon storage of the liposome suspension. Preparation of the dried lipid film:
To a washed 100 ml Quick fit round bottom flask was added 5ml of the 2:1 chloroform-mefhanol solution to ensure adequate dispersion of the phosphohpids. A total of 250/ l of mixed lipids from the 20mg/ml stock solutions was then added and gently mixed for 1 hour. The flasks were wrapped in aluminium foil to protect the lipids against oxidation by UV light and the headspace was nitrogen flushed for 5 minutes to remove oxygen from the headspace prior to attaching a flask to the Buchi rotary evaporator. The solvents were evaporated under vacuum for 90 minutes at 60rpm in a water bath set at 37°C, which is above the phase transition temperature (Tm°C) for the phosphatidylcholine component thereby ensuring all lipids were in the liquid crystalline phase allowing for a uniform dispersion. The evaporator was also covered in a black plastic film to further ensure a minimal passage of light. To ensure the removal of all solvents from the dried lipids, the flasks were finally freeze dried at -52°C at O.OOlMbar pressure for 2 hours then re-flushed with nitrogen, sealed and stored at -80°C until required for re hydration. Hydration of the dried lipid film and the encapsulation of a fluorescent dye:
The dried phospholipid films were hydrated in a two-stage process to avoid the precipitation or flocculation of the charged cationic lipid DOTAP which is sensitive to millimolar concentration of polyanions such as calcein, phosphate or EDTA as well as the presence of either monovalent or divalent cations in concentrations higher than five millimolar. The separation phenomenon of cationic lipids were observed during our work with the process investigated and corrected during our trials by hydration of the film initially in Milli Q water at 37°C for 30 minutes to initiate the formation of a micelle complex. This was then followed by a 30 minute to 1 hour hydration with the desired encapsulent in an appropriately buffered solution at pH 7.2 to induce a cationic sensitivity onto the liposome. Our initial trials used a 20mM solution of calcein in lOmM of Trisma adjusted to pH 7.2 and then continued with a lOmg/ml solution of fluorescein isothiocyanate dextran FD 250S to ensured the passive movement of a smaller molecule across the plasma membrane of our formed protoplasts was avoided. It was identified in earlier trials that when the smaller molecular weight calcein was incubated alone with the formed protoplasts there was some passive migration of this molecule across the plasma membrane or our cells producing a false positive result. Substitution of calcein with the FITC 250kDA dextran eliminated this situation and provided accurate data on liposomal induced endocytosis. The hydrated lipids were then cyclic frozen and thawed 3 times from -80°C to 37°C in an effort to increase the capture of volume of the fluorescent dye within the lipid bilayers while avoiding the break down of the FITC conjugated dextran. A brief bath sonication for 10 minutes was undertaken to finalise development of the MLVs while reducing any excessive aggregation between the micelles. Each solution was then extruded in an Avestin Lipo fast basic with stabiliser extruder.
Extrusion and isolation of the Large Unilamellar Vesicles by Gel Filtration: The Avestin lipofast basic extruder is a hand driven extrusion device with a capacity of 1 millilitre utilising 2 purpose built Hamilton gas tight syringes fitted to a pair of lour locked membrane supports that enclose a polycarbonate filter which is bound within a stainless steel housing . Prior to each use, the extruder components are washed in water than with a 2:1 chloroform: methanol solution to remove any residual lipid and rinsed again in Milli Q water and allowed to dry prior to assembly. Our experiment used a 400mn disposable polycarbonate filter that was fitted to the membrane supports with tongs to avoid contamination with ancillary lipids. Later work identified that 200nm filters may be more appropriate for an enhanced endocytotic entry of our liposomes across the cell wall based on transmission electron micrographs of large liposomes adhering to the outer membrane wall and smaller liposomes passing into the cytoplasm of the protoplasts. The drawback of this assumption is that the capture volume of the lipsome will also reduced. Upon assembly of the extruder, the syringes were individually filled with the lOmM Trisma buffer at pH 7.2 and extruded through the polycarbonate filter into the opposing syringe and the contents discarded. This was repeated with the other syringe but undertaken in the opposite direction with the intention of pre wetting the filer pad for an easier passage of the lipid solution through the membrane as well as removing any remaining dye or lipid which may have been bound within the casing of the extruder.
The extruder and the flasks containing the MLVs were immersed in a water bath at 37°C to preheat the apparatus and ensure the lipids were in a liquid crystalline state ensuring an easier passage through the extruder. The solutions were passed through the extruder in a forward and backward motion 23 times to achieve a uniform homogenous dispersion of LUVs. For each extrusion it was important to finish the procedure in the opposite syringe to avoid the re suspension of any trapped material which may be present on the filter during the first pass. The solutions, which became clearer on repeated extrusions, were filled into 2ml pre sterilised eppendorf tubes which were covered in aluminium foil and stored at 4°C prior to gel filtration.
The buffer for gel filtration consisted of a 1M sorbitol, lOOmM potassium chloride, 25mM trisma base and lOOuM magnesium chloride adjusted to ph 7.2. Prior to use, the buffer was filtered and degassed under vacuum for 10 minutes and prepared in Milli Q water. After filtration, the buffer was also boiled to remove any remaining air and held in a jacketed bath at 37°C to ensure the lipids were in a liquid phase during the filtration. The requirements for removing trapped air from the buffer prior to its use was to increasing the degree of separation between the liposomes and the free dye by avoiding the compression of the soft Sepharose packing beads. Prior to use, the column was equilibrated with three volumes of buffer to remove any residual ethanol or sodium azide wliich was used as a preservative within the FPLC lines and the Sepharose packed column, while not in use the columns were stored in the refrigerator at 4°C. The separation protocol used a flow rate of 0.5ml/min and two millilitres of liposome suspension were injected into the column and an elution efficiency of 95%. The process volume used was 79mls and the process time was 197 minutes. Example 3 : Creation and confirmation of competent yeast protoplasts
Preparation of culture media and incubation of yeast cells:
For the production of yeast protoplasts, a freeze-dried culture of Saccharomyces cerevisiae (YNN 281) was recussitated and then propagated for 20 hours at 30°C in a temperature controlled shaker set at 120rpm and grown in a sterilised YEPD media containing 1.5% (w/v) yeast extract, 2.0% (w/v) bacterial peptone and 2.0% (w/v) dextrose adjusted to pH 6.5. After incubation, the yeast cells were washed twice in an osmotically stabilised solution containing 0.65M potassium chloride, 25mM Trisma base and lOOuM magnesium chloride adjusted to pH 6.5. The concentration requirement for this suspension protocol is based on an understanding of the intracellular osmotic pressure and concentration of resting yeast from the genus Saccharomyces cerevisiae as defined using freezing point depression data. Centrifugation of the harvested cells were undertaken at 4°C in a Beckman J2 H2 centrigue at 10,000rpm for 15 minutes.
It has been identified that the porosity and lipid content of the yeast plasma membrane can be altered for a facilitated endocytotic transport of higher molecular weight compounds if the conditions for time, temperature or pH are manipulated or the solutes in the supporting media were modified to enhance lipid membrane growth.
The preparation of an enzyme solution and density gradients for the isolation of yeast protoplasts: For the digestion of our yeast cell walls an enzyme digest was prepared containing
2 mg/ml of Lyticase and lmg/ml of snail gut juice (/3-Glucuronidase from Helix pomatia) in a solution of 0.65M potassium chloride, 25mM trisma base and lOOuM magnesium chloride adjusted to pH 6.5. This is the same solution that was used for the washing and re suspension of the harvested yeast cells. The protoplasts were prepared from a 4 ml washed cell suspension with 1 ml of enzyme preparation added. Incubation was undertaken in a sealed conical flask and reacted for 3 hours at 37°C on a temperature controlled rotary shaker set at 120 rpm to produce our viable protoplasts.
A five-tier density gradient was then constructed in Falcon tubes to isolate protoplasts from intact cells and cell wall remnants in the range of 1.04g/l to l.lOg/l. Each solution comprised sorbital from 0.65M to IM in concentration, 25mM of trisma base, lOOuM of magnesium chloride and either 5 or 10% Ficoll in the densest fractions. Each solution was stabilised to pH 7.2 and a total of 5 ml of each solution was layered into the falcon tubes beginning with the densest fraction and finishing with the yeast - enzyme digest. The tubes were then capped and place in the Beckman centrifuge and spun for 15 minutes at lOOOrpm and 4°C to isolate the protoplasts.
Confirmation of yeast cell viability by C14 sucrose adsorption:
To ensure the competent nature of the formed protoplast to undertake endocytosis, the yeast cells were grown on a modified YEPD media in which the 2% (w/v) dextrose was replaced by 4% (w/v) sucrose as the carbon source to facilitate a mechanism for the absorption and transport of the sucrose C14 by the yeast cells. Protoplasts were formed as described above and isolated again utilising a sorbitol based density gradient. Silicon oil isolation of protoplasts is a convenient method for separating radio labelled cells from a sugar gradient solution. In this procedure cells are incubated in a radioactive solution for a specified period of up to 1 hour as seen in our trials and then spun through silicon oil at a specific density to separate them from scintillation counting. Seven micro tubes (400ul) were prepared for pelletising the protoplasts with each containing lOul of Fluorinert FC 77 as a capture solution and lOOul of Silicon Oil AR 200 (Density of 1.05g/l) as the media to be used for the separation of sucrose C14 protoplasts. In the experiment 40ul of a IM sucrose (made in a 50ml volumetric flask) was used to which was added 2ul of the sucrose C14 stock. Then 1.2ml of the protoplast suspension was placed into a 1.5ml eppendoff tube and 12ul of the IM sucrose C14 solution was placed in the cap. The incubation time started when the cap was sealed onto the eppendoff tube. Next, lOOul aliquots of the protoplasts were taken at 10 minute intervals and placed sequentially into a series of the prepared 400ul tubes containing the silicon oil gradients and spun at
7000rpm for 10 second. The tubes were removed at each time interval and cut through the upper silicon oil fraction to capture the formed protoplast pellet and resuspended in lOOul of Milli Q water in a scintillation tube containing 3ml of scintillation fluid. As a standard, lOOul volumes of the IM sucrose containing the sucrose C14 were taken for counting but not spun through the silicon oil as were the protoplasts without the isotope but these spun through the silicon oil and counted to avoid quenching correction of the protoplast extract.
A graph of time vs. counts, recorded as nmoles of absorbed sucrose was then prepared to confirm the uptake of our sucrose isotope by the competent protoplasts. Example 4: Endocytosis studies
Incubation of formed protoplasts with dye bound liposomes:
An 0.8ml aliquot of protoplast suspension was dispensed through a large orifice pipette tip (ensuring minimal disturbance of the fragile protoplast) into a sterilised eppendoff tube to which was added 0.8ml of the liposome suspension obtained from the gel filtration. Both solutions were of equivalent densities to ensure the stability of the protoplast and gently mixed prior to incubation. The tubes were individually wrapped in foil and embedded on their side in a sheet of Styrofoam which was also wrapped in foil to ensure the tubes would remain in place and then immersed into a water bath a 37°C for the 90 minute incubation. Confocal microscope studies identifying liposomal fusion and fluorescent endocytosis:
A 20ul sample of the incubated suspension was applied to a microscope slide with the edges of the cover slip sealed with an acrylic resin to inhibit drying out of the sample.
The slides once made were stored in the dark to reduce the risk of a loss in fluorescence of the FITC conjugate and viewed immediately under phase contrast and fluorescence using the confocal microscope.
Transmission Electron Microscope studies confirming liposomal coalescence and cellular endocytosis:
The technique used for preparing sections of block-mounted cells for image analysis required 0.5ml of the protoplast-liposome suspension to be fixed with 50ul of
1.25% (v/v) glutaraldehyde and 1.0% (w/v) paraformaldehyde in a 0.2M cacodylate buffer at pH 7.2 for 1 hour. The fixed suspension was then mixed with a similar volume of 5.0% agarose and placed at 4°C for 20 minutes to set. Small cubes of the mixture (approximately 2mm3) were cut and fixed for a further 14 hours at 4°C. Samples were then post fixed with 1.0% (w/v) osmium tetroxide, stained en bloc with 2.0% (w/v) uranyl acetate, dehydrated through a graded ethanol series and embedded in Epon/Araldite resin.
Ultra thin sections were cut on a Leica ultramicrotome and collected on copper/palladium grids. Sections were stained with 4.0% (w/v) uranyl acetate and
Reynolds lead acetate and viewed with a Philips CM 100 Transmission Electron Microscope with images captured on a Gatan Dual Vision digital camera.
Example 5 : Production and use of a liposome comprising 5 '-phosphodiesterase
Barley rootlets are macerated in a Waring blender. The resulting solution is then filtered through a cheese cloth and spun at 10,000 rpm at 4°C for 20 minutes to remove the root debris. The supernatant is removed and heated for 1 hour at 60°C. The solution is again spun at 10,000 rpm and 4°C for 20 minutes and the supernatant collected and desalted in a Hitrap 26/10 desalting column on an FPLC. The desalted solution is passed through an anionic exchange using a High Prep 16/10 column and active fractions collected, desalted and then passed through a Mono Q column. The single purified enzyme is then concentrated on a ultrafiltration membrane by centrifugation through an Amicon Ultra 4 membrane with a 30,000 wt cut off at 4°C and 7,500xg for 8 minutes.
Liposomes are then formed by a process of solvent evaporation and freeze drying to produce a thin film of phosphohpids in the desired concentration of PC 50%, DOPE 30%, DOTAP 10%, and Ergosterol 10%. The films are hydrated first in Milli Q water and then in the desalted enzyme solution containing an osmotically stabilised buffer of 0.65M sorbitol to ensure the 5 '-phosphodiesterase will not become inactive on freezing and thawing. The formed multilamellar vesicles are briefly sonicated for 2 minutes in a bath sonicator to reduce aggregation and continue the formation of large liposomes and then frozen and thawed 3 times to increase the capture potential of the liposomes. The thawed solution of liposomes is then extruded through an Avestin 400nm pore size filter extruder with large unilamellar vesicles containing the enzymes isolated by gel filtration on the FPLC using a Sepharose CL 4B filled 30cm by 1cm column. The enzyme bound liposomes are then concentrated again on the Amicon Ultra 4 centrifuge tube and stored at 4°C until required. Protoplasts and spheroplasts are prepared as described above. The protoplasts are then concentrated by centrifugation on a Millipore Ultra Free CL 5μm membrane tube for 50 minutes at ambient temperature and 900 rpm after a 1 :4 dilution in the 1.03g/l gradient buffer is undertaken to aid centrifugation. The concentrated protoplasts are then combined 50:50 with the concentrated enzyme bound liposome in an eppendorf tube and incubated in a shaking water bath at 37°C for 90 minutes to effect the transfection of the liposomes and to facilitate the release of the bound enzyme. The mixture of cells is then lysed on a French press and the cell wall material spun down at 10,000 rpm and 4°C for 20 minutes and the supernatant collected and frozen to retard any further reaction of the released enzyme. The 5' ribonucleotides in solution are then measured by RPHPLC against an incubated yeast protoplast suspension without the addition of the enzyme bound liposomes and the values compared.
Example 6: Results and Discussion
We incorporated phosphohpids, PE and PC into the primary matrix of a liposome. The inclusion of a charged amphiphile, DOTAP was to incite initial fusion to the surface proteins found on the yeast plasma membrane and the stabilising agent. Ergosterol was used to facilitate an easier lipid exchange between the yeast cell wall and the liposome. Additional compounds have also been built in to the liposome structure to facilitate a controlled release of the encapsulated material and are based on PE and its derivative DOPE which contain a unique high degree of unsaturated fatty acids.
PE was used with DOPE in the release mechanism for our liposomes, it has a smaller head group compared to PC and is inherently cone shaped and prone to forming hexagonal shaped, inverted micelles in solution particularly at a lower pH. The presence of PE and particularly DOPE with two unsaturated oleic groups provides for a higher membrane curvature within the liposome that leads to a faster facilitated release of the encapsulated material and as such was incorporated to operate as the trigger release compound within the formula.
The trials that were undertaken comprised the following phospholipid combinations:
Figure imgf000024_0001
All trials were undertaken in duplicate using a unencapsulated FITC conjugated dextran as a negative control to confirm non-endocytosis transport by an unencapsulated conjugate.
There are three major categories of liposomes, Multilamellar vesicles which contain 2 or more concentric lamellae arranged in an onion skin configuration and can range in size form lum to <100um, Large Unilamellar Vesicles which have a single bilayer and size distribution in the range of 200um to lum and Small Unilamellar Vesicles which are less than 200nm in size. For our work, we have chosen the Large Unilamellar Vesicles (LUV) because Multi Lamellar vesicles were to large to cross the yeast plasma membrane and Small Unilamellar Vesicles were too small and unable to trap significant quantities of our FITC Dextran or 5'-phoshpodiesterase. Large Unilamellar Vesicles can be made by a variety of methods after initial hydration of the lipid film to form MLV. Probe or bath sonication is a time consuming process that produces liposomes of unequal size and capture potential and in the case of probe sonication produces only a small volume of suspension which needs to be cooled in ice water to remove the heat generated from the tip of the probe. This process is not scalable or adaptable to the encapsulation of enzymes as the heat generated and the requirement to remove titanium fragments from the liposome suspension would result in the inactivation the enzymes to be encapsulated.
A dehydration-rehydration procedure can also be adopted and is scalable to lOOlts volumes but is also variable in the capture potential. Reverse Phase solvent evaporation Ethanol Injection, detergent dialysis can also be applied but the drawback of each of these protocols while currently used by many researchers, exposures our enzyme to either organic solvents or detergents which will significantly reduce its activity. The detergent removal procedure particularly requires exhaustive dialysis to remove the surfactants and would be prohibitively expensive for the food industry. Micro fluidisation has also be used to prepare vesicles as can a French Press, but again enzyme denaturation by shear forces would make these procedures unacceptable.
We used solvent evaporation for the lipids and a gentle freeze thaw and extrusion protocol for the production of LUVs because it allowed for a high capture volume of the fluorescent dye and the 5 '-phosphodiesterase and permitted the easier incorporation of a cationic lipid.
The inclusion of a preliminary freeze-thaw step prior to extrusion provides for and increase in the capture volume within the core of the formed LUV as confirmed also by our TEM observations. The principle of freezing and thawing causes a rupture and re- fusion of the liposome during which time the encapsulated solute equilibrates in the deeper cavities of the liposomal core. The liposomes upon freezing and thawing can also aggregate however it was seen that a brief sonication step prior to extrusion could disassociate the cluster and aid in the formation of LUVs.
In experiments with calcein, up to 6 freeze thaw cycles were used to increase the capture volume however in the case of the FITC conjugated Dextran, only 3 cycles were preformed in an effort to avoid breaking off the fluorescein compound which if free could provide a false positive result as was seen in the endocytosis studies with Calcein.
The size of the formed liposomes was tailored to < 400nm with the action of the extruder reducing the risk of denaturing enzymes or conjugates as well as fouling the membranes. The filter used were a 400mm filter although a 200nm filter was later evaluated to increase the percentage of small LUV for easier migration across the lipid membrane of the cell. The polycarbonate membranes used for the extrusion are produced by a combination laser and chemical etching process, which aims to produce straight- sided pore holes of exact diameter.
It was also found that during our trials that there was a necessity to hydrate and extrude our lipids above the phase transition temperature of the highest temperature lipid to avoid tearing of the polycarbonate filter pads during extrusion.
The extrusion procedure produced LUVs of a uniform, defined size as determined by the Malvern Mastersizer S, and confirmed by Transmission Electron Micrographs. The average size was 0.36 of a micron. The process of gel filtration was used to fractionate the formed liposomes from the solution containing the unencapsulated dye. The successful separation of the cationic liposomes required an understanding of the principles of separation based on a differential size of the materials and the capability to pack an efficient gel filtration column. Sepharose CL 4B was the packing material used for the separation and is a bead- formed agarose which is derived from agar and cross-linked by reaction with 2,3 di- bromopropanol under alkaline conditions. The cross-linking effect of this material as in the case of cross-linked starches provides the agarose gel with a greater thermal and chemical stability over a wide pH range. Sepharose CL 4B chosen because it is in the middle of the separation range for Sepharose and has a smaller bead size within its bottom range which facilitates a faster movement of larger molecular weight components. It has an optimum separation range between 70 x 102 - 20 x 102 and a bead size in the range of 45 to 165um. The filters for the column were chosen specifically to be 25um to ensure the smaller size beads within the column would remain and the liposomes would separated and not become lodged on to the top of the column filter restricting the flow and hindering the separation as seen when early columns were used for our trials. The conventional filters were identified to be 2um in size causing fouling and restricted the entry of the large liposomes into the column, prohibiting their isolation.
The separation buffer used in the trials was chosen because it could osmotically support the formed protoplasts when combined with the later liposomes for endocytosis studies and identified during the gradient separations for the formed protoplasts. Separation of liposomes from gel filtration was identified by two eluent peaks on the chromotograph in with the milky suspension containing the liposomes exiting the column first as a function of its molecular size and confirming by TEM images, negatively staining on carbon coated grids with 2.0% (w/v) solutions of sodium phosphotungstate adjusted to pH 7.0
Protoplasts were prepared according to standard techniques. A three-hour incubation was undertaken with post centrifugation to isolate the protoplasts performed at lOOOrpm for 15minutes at 4°C. Protoplasts were found primarily in the third layer of the falcon tube with the solution having a density of 1.07g/l. This buffer concentration was then used as the separation solution for all gel filtration experiments. Protoplasts were identified by phase contract and TEM microscopy with remnants of cell wall present and captured. It was observed during the confocal and TEM microscopy that remnants of the cell wall containing the negatively charged proteins formed clusters with the DOTAP liposomes particularly at the 20 molar % concentration.
The addition of a two-component enzyme system using Lyticase and Snail Gut
Juice, (/3-Glucuronidase from Helix pomatia) target the hydrolysis of /3-(l-3) glucans and the cysteine bonds within proteins of the cell wall to effectively hydrolyse both carbohydrates and proteins producing the protoplasts. Incubation trials were undertaken at a constant temperature of 37°C and at a pH of 7.2 because we had identified pH not to be a critical parameter and all prior hydrations and purification steps were conducted at this temperature. The only variable that was reviewed was the incubation time, which varied from 30 minutes to 90 minutes. It was decided that 90 minutes would be the most appropriate time to achieve the highest transfected levels of protoplasts.
To ensure the uptake of our liposomes by endocytosis, viable protoplasts had to be determined and the use of a radio labelled isotope of sucrose was adopted with the uptake of this metabolite recorded over a one-hour period. Cells were grown in a sucrose media to facilitate the desired cellular transport mechanism.
Standards were prepared and measured for background scintillation without the added isotope and lOOul of a IM sucrose standard continuing the isotope was measured to obtain counts for a 1 umole solution of sucrose. The scintillation result showed the 1 umole of sucrose provided approximately 7000counts, therefore 1 count was calculated to be 1 x 10"6 /7000 or 144 x 10"12 moles. Background counts for the non-isotope sucrose solution was 9 counts. The result from this experiment showed a linear and progressive uptake of the sucrose isotope as identified in the table below highlighting the competent and viable nature of the formed protoplasts.
Table 1. Time and scintillation counts for the determination of I-Sucrose 14
Figure imgf000028_0001
Figure imgf000029_0001
Movement of solutes across the membrane can be undertaken in a number of ways, depending on the size and the charge of the solutes by the process of either diffusion or adsorption. Fusion, inter membrane transfer and exchange of lipids (between liposomes and cell membranes) results in the facilitated uptake of the large molecular compounds by cells with their delivery into early endosomes. The uptake process occurs by the action of either phagocytosis but usually endocytosis and requires solutes to be encapsulation in a micelle with an opposite surface charge to that of the cell.
During endocytosis, an initial coalescence of liposomes with a cell's plasma membrane occurs when the cell's surface proteins or enzymes that are negatively charged bind to a positive charge that has been applied onto the liposome with the further possible addition of stabilising cations, antibodies or Proplylene Glycol to ensure protection and correct orientation of the functionally active enzymes bound to the cells surface.
Once fixed to the surface of the cell, the liposome becomes enveloped by the plasma membrane.
Once brought into the cell, the liposome resides in an early endosome. The action of a reduced pH environment within the cell of between 5.6 and 5.9 combined with an elevated incubation temperature of 37°C encourages the exchange of lipids between the 2 membranes resulting in a weakening of the lipsome and endosomal structure. At an elevated temperature, the fluidity of the LUV and the alteration in the packing density caused by the ergosterol aided in the facilitated the release of the conjugated dextran into the cell cytoplasm. The main release mechanism as identified in our work was the PE and DOPE components which contained Oleic acid as identified by the fluorescence seen within the cells with the use of formulas 4, 5, 11 and 12. Table 2. A summary of the endocytosis trials with the various liposomal formulas containing FITC Dextran
All trials were conducted in duplicate with a negative control evaluating the endocytosis of unencapsulated Dextran
Figure imgf000031_0001
Figure imgf000032_0001
Confocal and Electron microscopy determinations of cellular fusion and endocytosis
The confocal images were used to identify those liposomes undertaking active endocytosis with a controlled release of the encapsulated fluorescent dye in to the yeast protoplasts. Confirmation of endocytosis was confirmed by Transmission Electron Microscopy, which provided images of protoplast-liposomes fusion and both small and large liposomes bound to the cell wall as well as small liposomes found within an early endosome of a yeast cell cytoplasm. Conclusion:
The action of DOTAP to facilitate coalescence between the liposomes and the yeast protoplast appears to be essential in facilitating cellular fusion while the addition of
DOPE particularly provides for a greater release of the bound conjugated dextran compared to the liposomes containing phosphatidylethanolamine, however both work to various degrees.
It can be concluded then the cationic liposomes which are formed at a higher pH than the target cell's cytoplasmic pH are capable of fusing and entering a cells cytoplasm.
The action of a trigger release mechanism incorporating phosphatidylethanolamine is important for the release of the components bound within the liposome however PE alone can also still provide a controlled release of the liposomal contents if the temperature and time of incubation is increased.

Claims

Claims
1. A liposome for fusing with a yeast cell, the liposome characterised in that about 40-50 molar % of the liposome lipid bilayer is phosphatidyl choline (PC), about 10-20 molar % of the liposome lipid bilayer is a cationic amphiphile, about 10 molar % of the liposome lipid bilayer is a sterol and about 30 molar % of the liposome lipid bilayer is phosphatidyl ethanolamine (PE) and/or dioleoylphosphatidylethanolamine (DOPE).
2. A liposome according to claim 1 wherein about 50 molar % of the liposome lipid bilayer is PC.
3. A liposome according to claim 1 wherein about 20 molar % of the liposome lipid bilayer is cationic amphiphile.
4. A liposome according to claim 1 wherein about 30 molar % of the liposome lipid bilayer is PE.
5. A liposome lipid bilayer according to claim 1 wherein about 30 molar % of the liposome lipid bilayer is DOPE.
6. A liposome according to claim 1 wherein the sterol is ergosterol.
7. A liposome according to claim 1 wherein the sterol is cholesterol.
8. A liposome according to claim 1 wherein the cationic amphiphile is 1,2- dioleoyl-jR-glycero-3-trimethylammonium-propane (DOTAP).
9. A liposome according to claim 1 wherein the liposome lipid bilayer further comprises oleic acid.
10. A liposome according to claim 9 wherein about 5 molar % of the liposome lipid bilayer is oleic acid.
11. A liposome according to claim 1 wherein the liposome further comprises a molecule to be introduced into a yeast cell.
12. A liposome according to claim 11 wherein the molecule is an exogenous molecule.
13. A liposome according to claim 11 wherein the molecule is an enzyme for hydrolysing a RNA molecule to form a ribonucleotide in a yeast cell.
14. A liposome according to claim 13 wherein the enzyme is a 5' phosphodiesterase.
15. A liposome according to claim 14 wherein the 5' phosphodiesterase is phosphodiesterase 1 (orthophosphoric diester phosphohydrolase, EC 3.1.4.1).
16. A liposome according to claim 11 wherein the molecule is an enzyme for deamination of adenylate to form a 5'-inosine phosphate nucleoside.
17. A liposome according to claim 16 wherein the enzyme is 5 '-adenyl deaminase.
18. A liposome according to claim 11 wherein the molecule is useful for producing fermentation products such as proteins, amino acids, nucleic acids, sugars, organic compounds and monosodium glutamate.
19. A liposome according to claim 1 wherein the liposome has a diameter between 100 and 400 nm.
20. A liposome according to claim 1 wherein the liposome lipid bilayers destabilise at a pH of about 5.0 to 6.0.
21. A process for preparing a yeast cell for fusion with a liposome comprising treating the yeast cell to form a yeast cell spheroplast, or a yeast cell protoplast.
22. A process for introducing an exogenous molecule into a yeast cell spheroplast or protoplast comprising contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule in conditions for permitting the spheroplast or protplast to receive the liposome.
23. A process according to claim 22 wherein the liposome is according to claim 1.
24. A process for producing a yeast cell spheroplast or protoplast comprising an exogenous molecule comprising contacting a yeast cell spheroplast or protoplast with a liposome comprising the molecule to permit the spheroplast or protoplast to receive the liposome.
25. A process according to claim 24 wherein the liposome is according to claim 1.
26. A yeast cell, spheroplast or protoplast produced by the process of claim
24.
27. Use of a yeast cell according to claim 26 for producing a food, foodstuff, additive or an ingredient for producing a food or foodstuff.
28. A food, food stuff, additive or ingredient for production of a food or food stuff, produced by a yeast cell according to claim 26.
29. A process for producing a flavouring enhancer in a yeast cell comprising treating a yeast cell to form a spheroplast or protoplast, contacting the spheroplast or protoplast with a liposome according to claim 13 or 16 to permit the spheroplast or protoplast to receive the liposome and providing conditions for function of the enzyme of the liposome in the yeast cell to produce the flavour enhancer.
30. A flavour enhancer produced by the process of claim 29.
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