WO2004003205A1 - Hansenula polymorpha mutant strains with defect in outer chain biosynthesis and the production of recombinant glycoproteins using the same strains - Google Patents

Hansenula polymorpha mutant strains with defect in outer chain biosynthesis and the production of recombinant glycoproteins using the same strains Download PDF

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WO2004003205A1
WO2004003205A1 PCT/KR2003/001285 KR0301285W WO2004003205A1 WO 2004003205 A1 WO2004003205 A1 WO 2004003205A1 KR 0301285 W KR0301285 W KR 0301285W WO 2004003205 A1 WO2004003205 A1 WO 2004003205A1
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polymorpha
foreign protein
mutant
strain
recombinant
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PCT/KR2003/001285
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Hyun-Ah Kang
Sang-Ki Rhee
Moo-Woong Kim
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Korea Research Institute Of Bioscience And Biotechnology
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    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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    • C12N1/00Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/14Fungi; Culture media therefor
    • C12N1/16Yeasts; Culture media therefor
    • C12N1/165Yeast isolates
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/80Vectors or expression systems specially adapted for eukaryotic hosts for fungi
    • C12N15/81Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
    • C12N15/815Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts for yeasts other than Saccharomyces
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    • C12P21/005Glycopeptides, glycoproteins
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    • C12R2001/00Microorganisms ; Processes using microorganisms
    • C12R2001/645Fungi ; Processes using fungi
    • C12R2001/78Hansenula

Definitions

  • the present invention relates to Hansenula polymorpha mutant strains
  • present invention relates to the nucleic acid molecules containing H. polymorpha
  • HpOCHl gene the polypeptides encoded by it, and H. polymorpha artificial
  • the present invention relates to
  • microbes have been developed. Among them, microbes have been developed. Among them, microbes have been developed. Among them, microbes have
  • yeast expression systems have a major advantage in that, as
  • the expressed recombinant proteins can be easily recovered and purified, since
  • yeast cells secrete only a small fraction of the proteins to the outside.
  • methylotrophic yeasts such as Hansenula polymorpha, Pichia
  • S. cerevisiae include instability of
  • glycoproteins which are modified by attachment of oligosaccharides via covalent bonds
  • carbohydrates attached to the glycoproteins can greatly affect folding, secretion,
  • Wild type yeasts have some limits as an expression system. The
  • methylotrophic yeasts are preferred over the wild type S. cerevisiae as a host
  • the core oligosaccharide is an intermediate of the biosynthesis pathway
  • outer chains attached to the intermediate are differentially biosynthesized based
  • Methylotrophic yeasts have recently been in the spotlight as a suitable host
  • the goal of this invention was to develop a mutant using H. polymorpha
  • a methylotrophic yeast which can produce recombinant glycoproteins that are
  • This mutant was obtained by selection of a
  • the gene was mutated to make an OCHl deletion mutant ( ⁇ ochl)
  • This mutant strain is a suitable host, which provides techniques to produce recombinant glycoproteins close to the structure of original proteins with proper
  • Figure 1 shows the difference in the resistance of H. polymorpha strains
  • Figure 2 shows the phenotype of the H. polymorpha mutant, DL42-15.
  • Yeast cells in a log phase were serially diluted 1 to 10, 5 ⁇ l was spotted onto the
  • YPD plate and the cells were cultured for 2 days.
  • Figure 3 shows the sequences of DNA and predicted amino acid of H..
  • Figure 4 shows amino acid sequence alignment of the Ochlp of H.
  • FIG. 5 is an illustration showing the gene recombination and pop-out to
  • Figure 6 shows the phenotype of the ochl defective mutant ( ⁇ ochl) of H.
  • Yeast cells in a log phase were serially diluted 1 to 10, 5 ⁇ l was
  • Figure 7 is a Western blot demonstrating the changes in the
  • the present invention consists of selecting the naturally occurring sodium
  • vanadate-resistant mutant strain DL42-15, originated from H. polymorpha DL-
  • Aspergillus niger glucose oxidase protein expressed in the sodium orthovanadate- Aspergillus niger glucose oxidase protein expressed in the sodium orthovanadate- .
  • the invention describes engineering of the defective mutant, which was
  • This mutant is an ideal host for expression of human recombinant proteins
  • hyperglycosylation-inhibiting mutants originated from H. polymorpha DL-1
  • This invention provides the DNA and amino acid sequences shown in Figure 3.
  • This invention provides the OCHl gene mutant ( ⁇ ochl), which inhibits hyperglycosylation of glycoproteins.
  • This invention provides this mutant yeast strain as an expression host to
  • This invention provides the hyperglycosylation-inhibiting mutant yeast
  • strain, DL42-15, deposited in KCTC accession no. KCTC 10263 BP.
  • This invention provides this DL42-15 strain as an expression host to
  • This invention provides suitable conditions for cell culture of these
  • Methylotrophic yeasts such as H. polymorpha and P. pastoris have been used.
  • glycoproteins used in this study refers to proteins processing
  • the Aspergillus niger glucose oxidase include, but are not limited to, the Aspergillus niger glucose oxidase, the S.
  • glycoprotein D the human angiostatin, erythropoietin, cytokine, human B7-1, B7-
  • B-7 receptor CTLA-4 human tissue factors, human growth factors (e.g. blood platelet-derived growth factor), tissue plasminogen activator, plasminogen
  • activator inhibitor-1 eurokinase, human lysosomal enzymes (e.g. ⁇ - galactosidase), plasminogen, thrombin, factor XIII and immune globulin.
  • glycoproteins can be used for therapeutic medicine delivered by injection, oral or
  • Glycoproteins produced in the mutants can be isolated and purified using
  • the H. polymorpha DLl used in this study to develop a expression host
  • This mutation frequency is similar to that in the wild type S. cerevisiae (Table 1).
  • aminoglycoside aminoglycoside, to synthetic detergents such as sodium deoxycholate, and to high
  • amino acid sequences deduced from the partial DNA sequences share homology
  • S. cerevisiae ScOCHl also shares high homology
  • DNA sequences are 5'-CAATCAGACCCGGTCTGTCGAGGAGT-3'(nucleotide
  • the DNA sequence analysis revealed the clones include the promoter
  • HpOchl amino acid sequence no.2
  • mutants were first screened on the minimal media containing no uracil, selecting
  • the selected mutant strain ⁇ ochl grows more slowly than the wild type; it
  • the GOD proteins expressed and secreted were isolated and purified for
  • expressed and secreted in the mutants are less hyperglycosylated, or in other
  • Figure 7B shows that all the proteins have the same molecular weight on the blot
  • mutant strains DL42-15 and ⁇ ochl, unlike the wild type,
  • mutants cells are the mutants cells. These mutants will be useful in the medical therapeutic industry.
  • H. polymorpha yeast cells has been broadly used to produce medical

Abstract

The present invention relates to polynucleotide containing Hansunula polymorpha Hpoch 1 gene; polypeptide coded thereby; Hansunula polymorpha mutant wherein hyperglycosylation of glycoprotein id inhibited by the mutation of the Hansunula polymorpha HpOCH1, or Hansunula polymorpha natural mutant; recombinant Hansunula polymorpha strain expressing a foreign protein prepared by introducing a gene coding a foreign protein to the Hansunula polymorpha mutant or Hansunula polymorpha natural mutant; and a method for preparing a foreign protein comprising the steps of culturing said mutant under the condition that a foreign protein can be expressed, and isolating the foreign protein from the obtained culture broth.

Description

Hans enula polymorpha mutant strains with defect in outer chain biosynthesis and
the production of recombinant glycoproteins using the same strains
Field of the invention
The present invention relates to Hansenula polymorpha mutant strains
with a defect in the outer chain biosynthesis of glycoproteins and the production
method of recombinant glycoproteins using these strains. More specifically, the
present invention relates to the nucleic acid molecules containing H. polymorpha
HpOCHl gene, the polypeptides encoded by it, and H. polymorpha artificial
mutant strains or its natural mutant strains in which hyperglycosylation of
glycoproteins is prevented. Furthermore, the present invention relates to
recombinant H. polymorpha strains expressing a foreign protein produced by
transformation with a gene encoding a foreign protein, and the production method
of a foreign protein, which comprises cultivating the strains under conditions that
allow them to express the foreign protein and isolating the expressed foreign
protein from the cultures.
Background of the invention
In order to express a foreign protein recombinantly on a large scale, an
optimal expression system should be selected to establish an efficient production
system because amounts, solubility, locations and modifications etc. of expressed proteins are dependent on host cell lines or features of desired proteins. For
large-scale expression of proteins, various host systems including bacteria, yeasts,
fungi, plants and animals have been developed. Among them, microbes have
been wildly used to express recombinant proteins because of easy culture thus
getting a high concentration of recombinant protein with a low-cost.
Yeasts, microbes having features of the eukaryotic expression and
secretion of proteins, are a suitable expression system to produce recombinant
proteins of higher eukaryotes on a large-scale. In comparison to bacterial
expression systems, yeast expression systems have a major advantage in that, as
eukaryotic microbes, they have protein secretory organelles similar to those of
higher eukaryotes. Therefore, the secretory proteins in yeast become biologically
active through post-translational modifications such as digestion of secretory
signal sequences, formation of disulfide bonds, glycosylation etc. Furthermore,
the expressed recombinant proteins can be easily recovered and purified, since
most yeast cells secrete only a small fraction of the proteins to the outside.
Recently, methylotrophic yeasts such as Hansenula polymorpha, Pichia
pastoris and other non-conventional yeasts have been developed as alternative
hosts, because they are able to replace the inherent disadvantages of the
traditioanl yeast Saccharomyces cerevisiae as hosts for industrial production of
desired proteins. The disadvantages of S. cerevisiae include instability of
expression vectors in long-term fermentation, hyperglycosylation of
glycoproteins, and low productivity of the expressed proteins in comparison to bacterial expression system (Gellissen, Appl. Microbiol. Biotechnol. 54, 741,
(2000)).
Most proteins utilized for medical therapeutic purposes in humans are
glycoproteins, which are modified by attachment of oligosaccharides via covalent
bonds in a secretory pathway. An important issue in large-scale protein
production in the field of biotechnology is the production of recombinant proteins
modified by suitable glycosylation because the structures and classes of
carbohydrates attached to the glycoproteins can greatly affect folding, secretion,
stability, half-life in serum, and antibody inductivity of the proteins.
Wild type yeasts have some limits as an expression system. The
recombinant glycoproteins expressed in S. cerevisiae have showed
hypermannosylation resulting from adding over 40 mannose residues to the
proteins and α 1,3-linked terminal mannose, which serves as an antigen in the human body (Romanos et al., Yeast 8, 423-488, 1992). In contrast the
recombinant proteins expressed in methylotrophic yeasts, H. polymorpha and P.
pastoris, have been reported to contain the mannose outer chains that are shorter
than those expressed in S. cerevisiae although they are still more
hyperglycosylated than native proteins (Bretthauer and Castellino, Biotechnol.
Appl. Biochem. 30, 193-200, 1999; Kang et al, Yeast 14, 371-381, 1998). These
methylotrophic yeasts are preferred over the wild type S. cerevisiae as a host
system for medical therapeutic proteins because they do not produce the α 1,3- linked terminal mannose, which can evoke an immune response. The core oligosaccharide is an intermediate of the biosynthesis pathway,
which is found in all eukaryotes from yeasts to mammalian cells. However, the
outer chains attached to the intermediate are differentially biosynthesized based
on species of proteins, cells and animals. Researchers have actively pursued the
development of a useful host system to produce recombinant glycoproteins, which
closely resemble native proteins containing proper outer chains, by means of
selecting mutant strains with defects in outer chain biosynthesis using an artificial
mutant method or manipulating the gene related to the chain biosynthesis using
molecular biological techniques.
In wild type S. cerevisiae, several strategies such as [3H]mannose suicide
selection, sodium orthovanadate resistance and hygromycin B sensitivity are used
to select the defective mutants of N-linked oligosaccharides biosynthesis
(Herscovics and Orlean, FASEB 7, 540-550, 1999). Functional complementation
experiments using these mutants led to the cloning of the OCHl gene (Ngd29)
playing an important role in the outer chain initiation (Nakanishi-Shindo et al., J.
Biol. Chem. 268, 26338-26345, 1993), the MNN9 gene regulating the outer chain
elongation and the MNN1 gene involved in attachment of the 1,3-linked terminal mannose (Gopal and Ballou, Proc. Natl. Acad. Sci. USA 84, 8824, 1987).
Those genes were targeted to make defective mutants by mutagenesis, which were
then developed as a host cell to produce recombinant glycoproteins (Kniskern et
al, Vaccine 12, 1021-1025, 1994; US Patent no. 5,798,226; US Patent no. 5,135,854). Methylotrophic yeasts have recently been in the spotlight as a suitable host
for recombinant protein expression over S. cerevisiae. However, a defective
mutant of the N-linked oligosaccharide biosynthesis in methylotrophic yeasts has
not yet been reported.
The goal of this invention was to develop a mutant using H. polymorpha,
a methylotrophic yeast, which can produce recombinant glycoproteins that are
suitable for use in the human body. This mutant was obtained by selection of a
defective mutant in the glycosylation pathway or by mutation of the OCHl gene
involved in the process. This defective mutant prevents hyperglycosylation of the
outer chains and is a suitable host for recombinant glycoproteins attached with
proper outer chains, which closely resemble the native proteins.
Summary of the invention
In order to develop a defective mutant of H. polymorpha for production of
recombinant N-linked glycoproteins closely resembling those of human, we
developed a method for selection of a defective mutant of the oligosaccharide
chain biosynthesis. We used sensitivity of sodium orthovanadate to select a
defective mutant of H. polymorpha, which exhibits more resistance against it.
We also cloned the OCHl gene involved in initiation of the outer chain
biosynthesis. The gene was mutated to make an OCHl deletion mutant (Δochl)
strain. This mutant strain is a suitable host, which provides techniques to produce recombinant glycoproteins close to the structure of original proteins with proper
outer oligosaccharide chains.
Brief description of the drawings
Figure 1 shows the difference in the resistance of H. polymorpha strains,
against sodium orthovanadate.
Figure 2 shows the phenotype of the H. polymorpha mutant, DL42-15.
Yeast cells in a log phase were serially diluted 1 to 10, 5 μl was spotted onto the
YPD plate and the cells were cultured for 2 days. A, YPD media containing 4 mM
sodium orthovanadate; B, YDP media at 45 °C ; C, YPD media containing 0.3%
sodium deoxycholate; D, YDP media at 37 °C .
Figure 3 shows the sequences of DNA and predicted amino acid of H..
polymorpha OCHl gene cloned in this study.
Figure 4 shows amino acid sequence alignment of the Ochlp of H.
polymorpha with homologues of other yeast strains. The numbers in parentheses
represent homology of Ochlp from other yeast strains versus Ochlp of H.
polymorpha. ΗpOchlp; H. polymorpha Ochl protein; ScOchlp, S. cerevisiae
Ochl protein; ScΗoclp, S. cerevisiae Hocl protein; CaOchlp, C. albicans Ochl protein. Figure 5 is an illustration showing the gene recombination and pop-out to
induce the H. polymorpha OCHl gene disruption
Figure 6 shows the phenotype of the ochl defective mutant (Δochl) of H.
polymorpha. Yeast cells in a log phase were serially diluted 1 to 10, 5 μl was
spotted onto the YPD plate and the cells were cultured for 2 days. A, YDP media
a 37 °C ; B, YDP media at 45 °C ; C, YPD media containing 40 μg/ml of
hygromycin B; D, YPD media containing 0.4% of sodium deoxycholate; E, YPD
media containing 7 mg/ml of calcofluor white.
Figure 7 is a Western blot demonstrating the changes in the
oligosaccharide formation of glucose oxidase expressed in the H polymorpha
mutant, DL42-15, and the ochl defective strain (Δochl).
Description of the preferred embodiment
The present invention consists of selecting the naturally occurring sodium
vanadate-resistant mutant strain, DL42-15, originated from H. polymorpha DL-
1 ; cloning the H. polymorpha OCHl gene and analyzing the DNA sequence;
disrupting the H. polymorpha OCHl gene; testing for the glycosylation of the
Aspergillus niger glucose oxidase protein expressed in the sodium orthovanadate- .
resistant strain, DL42-15, and the defective mutant strain, Δochl. The invention describes engineering of the defective mutant, which was
mutated in the outer chain biosynthesis of a methylotrophic yeast H. polymorpha
to prevent hyperglycosylation by subsequent attachment of mannose residues.
This mutant is an ideal host for expression of human recombinant proteins
because it produces glycoproteins with fewer outer chains that more closely
resemble the native proteins and therefore do not initiate an immune response.
The hyperglycosylation-inhibiting mutants originated from H. polymorpha DL-1
were either a natural mutant selected by sodium orthovanadate or the mutant
mutated in the OCHl gene o H polymorpha.
The DNA sequence (nucleotide no. 1) of H. polymorpha OCHl cloned in
this study was deposited in GenBank (accession no. AF490971) and in the Korean
Collection for Type Culture (KCTC) on May 29, 2002 (accession no. KCTC
10265BP). The sodium orthovanadate-resistant strain, DL42-15, and the OCHl
gene-mutated strain, Δochl, of H. polymorpha were also deposited in the KCTC
on the same day (accession no. KCTC 10263BP and KCTC 10264BP, respectively).
This invention provides the DNA and amino acid sequences shown in Figure 3.
This invention provides the OCHl gene mutant (Δochl), which inhibits hyperglycosylation of glycoproteins.
This invention provides this mutant yeast strain as an expression host to
express genes encoding heterologous glycoproteins. This invention provides the hyperglycosylation-inhibiting mutant yeast
strain, DL42-15, deposited in KCTC (accession no. KCTC 10263 BP).
This invention provides this DL42-15 strain as an expression host to
express genes encoding heterologous glycoproteins.
This invention provides suitable conditions for cell culture of these
mutants as well as methods for the production and isolation of the recombinant
proteins from the culture.
Methylotrophic yeasts such as H. polymorpha and P. pastoris have been
extensively used for production of therapeutic recombinant proteins in medical
and pharmaceutical industries.
The term "hyperglycosylation-inhibiting" used in this study refers to
reduction of the oligosaccharide chains attached to glycoproteins expressed in the
mutants of the methylotrophic yeasts in comparison of those of the wild-type
yeasts.
The term "glycoproteins" used in this study refers to proteins processing
glycosylation on more than one residue of asparagine, serine or threonine of
glycoproteins in Hi polymorpha.
Possible glycoproteins that can be produced using these invented mutants
include, but are not limited to, the Aspergillus niger glucose oxidase, the S.
cerevisiae invertase, the HIV envelop protein, the influenza A virus
hemagglutinin, the influenza neuraminidase, the bovine herpes type-1 virus
glycoprotein D, the human angiostatin, erythropoietin, cytokine, human B7-1, B7-
2, B-7 receptor CTLA-4, human tissue factors, human growth factors (e.g. blood platelet-derived growth factor), tissue plasminogen activator, plasminogen
activator inhibitor-1, eurokinase, human lysosomal enzymes (e.g. α- galactosidase), plasminogen, thrombin, factor XIII and immune globulin. Those
glycoproteins can be used for therapeutic medicine delivered by injection, oral or
non-oral administration or other methods used in particular areas.
Glycoproteins produced in the mutants can be isolated and purified using
general methods for protein isolation and purification. However, the specific
methods employed depend on the property of the proteins to be isolated. These
properties should be determined by the parties interested. In brief, cultured cells
are collected, the secreted proteins are precipitated, and the proteins are isolated
and purified according to a general method for protein isolation and purification
using immune absorption, fractionation or chromatography
The following examples explain the invention in detail, however, the
claims are not limited to them.
Experimental example 1>
Selection of the sodium orthovanadate-resistant mutant strain, DL42-15, of
H. polymorpha
Even a low concentration (5 mM) of sodium orthovanadate generally
inhibits the growth of yeast. Most S. cerevisiae vanadate-resistantmutant
strainsare mutants with mutations in genes involved in glycosylation processing in the Golgi (Kanik-Ennulat et al., Genetics 140; 933-943, 1995); Uccelletti et al.
Res Microbiol 150:5-12, 1999). One of the most efficient methods for selection
for oligosaccharide biosynthesis defective mutants is using sodium orthovanadate
to select one with its resistance and this method has been extensively used in S.
cerevisiae and Kluyveromyces lactis. However, this method cannot be used in the
methylotrophic yeast P. pastoris because it itself is resistant to sodium
orthovanadate (Martinet et al., Biotechnology Lett. 20, 1171-1177, 1999). In the
case of another methylotrophic yeast H. polymorpha, CBS 4732 and NCYC 495
strains have also been reported that they can grow in the media containing 96 mM
sodium orthovanadate (Mannazzu et al., FEMS Microbiol Lett. 147: 23-28, 1997;
Mannazzu et al. Microbiology 144: 2589-2597, 1998).
The H. polymorpha DLl, used in this study to develop a expression host
for production of recombinant proteins, showed a similar sensitivity to sodium
orthovanadate to S. cerevisiae unlike CBS 4732 and NCYC 495 (Figure 1 and
Table 1). The natural mutant cells of H. polymorpha DLl, which became
resistant to the sodium orthovanadate , occurred at a frequency of 1 perlO6 cells
on the YPD media plate containing 4 mM sodium orthovanadate. showed that
This mutation frequency is similar to that in the wild type S. cerevisiae (Table 1).
[Table 1]
Growth comparison of yeast strains grown on the YPD plates containing sodium orthovanadate.
Figure imgf000014_0001
* The results were obtained after culturing at 30°C (S. cerevisiae)ox at 37°C (H.
polymorpha) for 4 days.
All the defective mutants of oligosaccharide biosynthesis among the
sodium orthovanadate-resistant mutants of S. cerevisiae have been shown to be
more sensitive to antibiotics with a large molecular- weight such as
aminoglycoside, to synthetic detergents such as sodium deoxycholate, and to high
temperature (Dean N., Proc. Nαtl. Acαd. Sci. USA 92, 1287-1291, 1995). We
selected 250 natural mutants from H. polymorpha DLl showing more resistance
to sodium orthovanadate, most (over 90%>) of which were also resistant to
hygromycin B. The selected mutants have been further tested on the media
containing sodium orthovanadate at high temperature (45 °G>) to select the mutant
colonies resistant to sodium orthovanadate but sensitive to high temperature. Finally, the mutants have been isolated and designated as H polymorpha DL42-
15 (Figure 2 and 3).
Experimental example 2>
Cloning and DNA sequence analysis of the H. polymorpha OCHl gene We analyzed the Random Sequenced Tags (RSTs) of the partial genomic
analysis of H. polymorpha (Blandin et al, FEBS Lett. 487, 76, 2000) and
obtained the partial DNA sequences of genes showing homology with the genes
involved in the oligosaccharide biosynthesis of S. cerevisiae. The predicted
amino acid sequences deduced from the partial DNA sequences share homology
with a region corresponding to the C-termini of S. cerevisiae OCHl (ScOCHl),
which plays an important role in attachment of αl, 6-mannose in the beginning of
the outer chain biosynthesis. S. cerevisiae ScOCHl also shares high homology
to S. cerevisiae HOCl (ScHOCl). A pair of primers designed based on the partial
DNA sequences are 5'-CAATCAGACCCGGTCTGTCGAGGAGT-3'(nucleotide
no. 3), 5*-ACATCAACGTGGAGAACTGGGAGCAC-3' (nucleotide no. 4). Using
these primers, we amplified by PCR a 900 bp fragment from genomic DNA
isolated from H. polymorpha.
We performed Southern blotting, probed with the 900 bp fragment, using the genomic DNAs digested with several restriction enzymes. In order to isolate
the promoter region and full-length of the H. polymorpha OCHl gene, we gel-
extracted the two fragments of 2.3 kb (digested with BamHI) and 5 kb (digested
with Bglll) corresponding to the signals of the Southern blot. Each fragment was
then cloned into a cloning vector pBluescript KS+ (Stratagen Co.). The clones
were sequenced in both strands.
The DNA sequence analysis revealed the clones include the promoter
region of 1 kb and the open reading frame of 1.3 kb encoding a putative protein with 435 amino acids (nucleotide no. 1, Figure 3). The predicted protein of H.
polymorpha was designated as HpOchl (amino acid sequence no.2). This protein
shares low homology (21-23%) to ScOCHl (accession no. YGL038C), ScHOCl
(accession no. YJR075W) and Candida albicans Ochl (accession no. AY064420)
proteins. However, it contains a DXD motif, a possible activation site, and the
transmembrane spanning region in the N-terminal found in the
mannosyltransferase, a type II membrane protein (Figure 4).
Experimental example 3>
Production and analysis of the OCHl gene-mutated strain ( Δ ochl) of H
polymorpha
In order to make the mutants where the OCHl gene was disrupted, two
techniques, fusion PCR using the primers listed in Table 2 and in vivo DNA
recombination, were used for the gene disruption (Oldenburg et al, Nucleic Acid
Res. 25, 451, 1997). The regions corresponding to the N-terminal and the C-
terminal of URA3 and OCHl genes, respectively, were amplified by PCR. The
fragment corresponding to the N-terminal of HpOCHl was then fused by fusion
PCR to the fragment corresponding to the N-terminal of URA3 while the fragment
corresponding to the C-terminal of HpOCHl was fused to the fragment
corresponding to the C-terminal of URA3. The fused DNA fragments were
introduced into yeast cells to make recombination of the gene. Transformants where the HpOCHl gene was disrupted were then selected (Figure 5). The
mutants were first screened on the minimal media containing no uracil, selecting
for the URA3. marker. PCR was then performed on the genomic DNAs isolated
from the mutants and the wild type to confirm the HpOCHl gene disruption. An
H. polymorpha mutant Δochl(leu2 ochl::URA3) was selected based on analysis
of the PCR products.
The selected mutant strain Δochl grows more slowly than the wild type; it
is more sensitive to a high temperature of 45 °C and to hygromysin B; its growth
is inhibited by addition of sodium orthovanadate and calcofluor white (Figure 6).
All these properties are common in the defective mutant strains of the outer chain
biosynthesis in yeasts, suggesting the mutant strain Δochl has a defect in the
biosynthesis.
[Table 2]
' Primers used in this study for PCR to disrupt the HpDCHl gene
Figure imgf000017_0001
Figure imgf000018_0001
Experimental example 4>
Analysis of the recombinant glycoproteins expressed and isolated from the mutant
strains, DL42-15 and Δochl, of H. polymorpha.
In order to examine the glycosylation defect on a recombinant
glycoprotein expressed in the mutant strains, DL42-15 and Δochl, described in
experimental example 1 and 3 respectively, we expressed the glucose oxidase
(GOD) of an Aspergilhis niger gycoprotein in these mutants. The GOD protein
contains the 8 potential sites for the N-linked glycosylation (Frederick et al, J.
Biol Chem. 265, 3793, 1990).
In order to express the GOD in the mutant yeast strains, we constructed a
GOD expression vector, pDLMOX-GOD using the pDLMOX-Ηir vector (Kang et
al Yeast 14, 371, 1998)). The DNA fragment containing the hirudin gene was
first removed from the pDLMOX-Ηir vector and the GOD gene fused to the
fragment corresponding to the secretory signal of the α-amylase at the N-terminal
was then replaced in the vector (Kim S. Y. Ph. D. Dissertations, Yonsei University, Korea, 2001). The resultant vector pDLMOX-GOD was introduced
into the two mutant strains, DL42-15 and Δochl as well as the wild type strain, and they were cultured on the YPM media (1% yeast extract, 2% peptone, 2%
methanol) to express the GOD proteins.
The GOD proteins expressed and secreted were isolated and purified for
Western blot anlaysis. The proteins were run on a polyarcylamide gel, transferred
to a nitrocellulose membrane, and blotted using a GOD antibody. Figure 7A
shows that the GOD proteins of the mutant strains, DL42-15 and Δochl, have a
smaller molecular weight than that of the wild type, suggesting the proteins
expressed and secreted in the mutants are less hyperglycosylated, or in other
words, hyperglycosylation is inhibited in the mutant strains. To confirm the
blotting result, we treated all the proteins with endoglycosidase H enzyme to
digest the oligosaccharide chains attached on the proteins, and repeated the blot.
Figure 7B shows that all the proteins have the same molecular weight on the blot,
suggesting they are all the same proteins. These results demonstrate that the
proteins expressed and secreted in the mutant cells were smaller than the one
expressed and secreted in wild type cells due to less hyperglycosylation on the
proteins. Therefore, the mutant strains, DL42-15 and Δochl, unlike the wild type,
are suitable host cells to produce the human glycoproteins, in which the
hypergylcosylation of the proteins will be inhibited, resulting in a closer resemblance to native human proteins.
Possible application of the invention to industries The H. polymorpha mutants, DL42-15 and Δochl, axe able to be used as
host cells to produce recombinant glycoproteins, which will express and secrete
the proteins containing proper outer oligosaccharide chains closely resembling
the native proteins because the hyperglycosylation of the proteins is inhibited in
the mutants cells. These mutants will be useful in the medical therapeutic industry
because H. polymorpha yeast cells has been broadly used to produce medical
therapeutic recombinant proteins on a large scale.
Figure imgf000021_0001
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B. IDENTIFICATION OF DEPOSIT Further deposits are on an additional sheetD
Name of depositary institution Korean Collection for Type Cultures
Address of depositary institution(inc luding postal code and country)
#52, Oun-dong, Yusong-ku, Taejon 305-806, Republic of Korea
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Claims

What Is Claimed Is:
1. A nucleic acid molecule comprising the DNA sequence shown in Figure 3.
2. The nucleic acid molecule according to claim 1, wherein the nucleic acid
molecule is Hansenula polymorpha HpOCHl gene (KCTC 10265BP).
3. A polypeptide comprising the amino acid sequence shown in Figure 3.
4. H. polymorpha mutant strains which prevent the hyperglycosylation of
glycoproteins by mutation of the HpOCHl gene.
5. A H. polymorpha mutant strain Δochl (KCTC 10264BP) according to claim 4,
wherein the HpOCHl gene is disrupted. .
6. A recombinant H. polymorpha strain expressing a foreign protein, wherein the
recombinant strain is produced by introducing the gene encoding the foreign
protein into H. polymorpha strain according to claim 4.
7. A recombinant H. polymorpha strain according to claim 6 expressing a foreign
protein, wherein the recombinant strain is produced by introducing the gene
encoding the foreign protein into the disrupted mutant strain, Δochl .
8. A natural mutant strain, DL-42-15, originated from H. polymorpha DLl strain,
prevented from hyperglycosylation of glycoproteins (KCTC 10263BP).
9. A recombinant H. polymorpha strain expressing a foreign protein, wherein the
recombinant strain is produced by introducing the gene encoding the foreign
protein into H. polymorpha mutant strain, DL-42-15 according to claim 8
10. A method for producing a foreign protein, wherein the method comprises
cultivating the recombinant strains according to any one of claims 6, 7, and 9
under conditions that allow the strains to express the foreign protein and isolating
the expressed foreign protein from the cultures.
11. The method according to claim 10, wherein hyperglycosylation of a foreign protein is prevented.
PCT/KR2003/001285 2002-06-29 2003-06-30 Hansenula polymorpha mutant strains with defect in outer chain biosynthesis and the production of recombinant glycoproteins using the same strains WO2004003205A1 (en)

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US8354268B2 (en) 2000-06-30 2013-01-15 Vib, Vzw Protein glycosylation modification in methylotrophic yeast
US8663971B2 (en) 2000-06-30 2014-03-04 Vib, Vzw Protein glycosylation modification in methylotrophic yeast
US9359628B2 (en) 2000-06-30 2016-06-07 Vib, Vzw Protein glycosylation modification in methylotrophic yeast
EP1718752A1 (en) * 2004-01-30 2006-11-08 Korea Research Institute of Bioscience and Biotechnology A novel hansenula polymorpha gene coding for alpha 1,6-mannosyltransferase and process for the production of recombinant glycoproteins with hansenula polymorpha mutant strain deficient in the same
EP1718752A4 (en) * 2004-01-30 2008-01-23 Korea Res Inst Of Bioscience A novel hansenula polymorpha gene coding for alpha 1,6-mannosyltransferase and process for the production of recombinant glycoproteins with hansenula polymorpha mutant strain deficient in the same
US7867730B2 (en) 2004-01-30 2011-01-11 Korea Research Institute Of Biosciences And Biotechnology, Inc. Hansenula polymorpha gene coding for α 1,6-mannosyltransferase and process for the production of recombinant glycoproteins with Hansenula polymorpha mutant strain deficient in the same gene
EP1941042A1 (en) * 2005-10-27 2008-07-09 Korea Research Institute of Bioscience and Biotechnology A novel hansenula polymorpha gene coding for dolichyl-phosphate-mannose dependent alpha-1,3-mannosyltransferase and process for the production of recombinant glycoproteins with hansenula polymorpha mutant strain deficient in the same gene
EP1941042A4 (en) * 2005-10-27 2009-08-05 Korea Res Inst Of Bioscience A novel hansenula polymorpha gene coding for dolichyl-phosphate-mannose dependent alpha-1,3-mannosyltransferase and process for the production of recombinant glycoproteins with hansenula polymorpha mutant strain deficient in the same gene
US8187858B2 (en) 2005-10-27 2012-05-29 Korea Research Institute Of Bioscience And Biotechnology Hansenula polymorpha gene coding for dolichyl-phosphate-mannose dependent alpha-1,3-mannosyltransferase and process for the production of recombinant glycoproteins with Hansenula polymorpha mutant strain deficient in the same gene
US8685671B2 (en) 2005-10-27 2014-04-01 Korea Research Institute Of Bioscience And Biotechnology Process for producing recombinant glycoproteins by culturing a Hansenula polymorpha mutant strain

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