WO2003082197A2 - Immunosuppressant compounds, methods and uses related thereto - Google Patents
Immunosuppressant compounds, methods and uses related thereto Download PDFInfo
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- WO2003082197A2 WO2003082197A2 PCT/US2003/009219 US0309219W WO03082197A2 WO 2003082197 A2 WO2003082197 A2 WO 2003082197A2 US 0309219 W US0309219 W US 0309219W WO 03082197 A2 WO03082197 A2 WO 03082197A2
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Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/08—Linear peptides containing only normal peptide links having 12 to 20 amino acids
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K4/00—Peptides having up to 20 amino acids in an undefined or only partially defined sequence; Derivatives thereof
-
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Definitions
- peptides arise from proteins synthesized inside the antigen presenting cell (APC), e.g., from proteins of viruses or other intracellular parasites, or from misfolded self proteins.
- APC antigen presenting cell
- the three class I isotypes, as well as their allelic forms, have different peptide binding specificities, depending on polymorphic residues within the binding site (Falk, K., et al. (1991) Nature, 351, 290; Falk, K., et al. (1992) Eur. J. Immunol., 22,277).
- There is an additional binding site on the third class I domain that interacts with CD8 molecules expressed selectively on Tc cells.
- the peptide binding site is composed of the first domains of ⁇ and ⁇ chain, which, in contrast to class I, is open on both sides, allowing the binding of longer (12-24 residues long) peptides (Chicz, R.M., et al. (1992) Nature, 358, 764).
- An additional binding site on the second domain of ⁇ chains interacts with the CD4 molecule, expressed selectively on helper T (Th) cells.
- This molecule has a co- receptor function for Th cells, analogous to that of CD8 for Tc cells.
- DRBl alleles on RA The effect of DRBl alleles on RA is manifested in different ways: first, the disease association shows ethnic-dependent preference for one or the other allele (Ohta et al, and Schiff et al, above), second, DRB 1*0401 is associated with more severe forms of the disease than the other alleles (Lanchbury, J.S, et al. (1991) Hum. Immunol, 32, 56), and third, a gene dosage affect can be observed, in that homozygosity for a susceptibility allele or combinations of two susceptibility alleles confer more severe, chronic forms or juvenile onset of RA (Wordworth, P, et al. (1992) Am. J. Hum. Genet, 51, 585; Nepom, B.S.
- Figure 15 In-vivo immunosuppressive properties of preferred tetramer and heptamer compounds of the invention following co-imunisation with antigen as measured by T-cell proliferation.
- An effective dose of a compound of the invention for the treatment of a disorder involving undesirable or inappropriate MHC activity, such as an autoimmune disorder can be determined by standard means known in the art taking into account routine safety studies, toxicity studies, dose concentration studies and method of delivery, e.g, bolus, continuous or repeated. In a particular embodiment, a dose of about 0.01 to about 500 mg/kg can be administered.
- IC 50 means the concentration of a drug which inhibits an activity or property by 50%, e.g, by reducing the frequency of a condition, such as cell death, by 50%, by reducing binding of a competitor peptide to MHC II protein by 50% or by reducing the level of an activity, such as T-cell proliferation or IL2 secretion, by 50%.
- ED50 means the dose of a drug that produces 50% of the maximum of a given response or effect. Alternatively, it may refer to the dose that produces a pre-determined response in 50% of test subjects or preparations.
- alkyl refers to the radical of a saturated aliphatic group, including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl substituted cycloalkyl groups, and cycloalkyl substituted alkyl groups.
- a straight chain or branched chain alkyl has about 30 or fewer carbon atoms in its backbone (e.g, C ⁇ -C 3 o for straight chain, C 3 -C 3 o for branched c hain), and alternatively, about 20 or fewer.
- cycloalkyls have from about 3 to about 10 carbon atoms in their ring structure, and alternatively about 5, 6 or 7 carbons in the ring structure.
- Such substituents may include, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxyl, a phosphoryl, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety.
- a halogen such as a carboxy
- the moieties substituted on the hydrocarbon chain may themselves be substituted, if appropriate.
- the substituents of a substituted alkyl may include substituted and unsubstituted forms of amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), -CF 3 , -CN and the like.
- amino acid refers to an organic compound bearing both a carboxylic acid group and an amino group, preferably attached to the same carbon atom or to adjacent carbon atoms, most preferably to- the same carbon atom.
- exemplary amino acids are those found in nature, such as amino acids that are used to synthesize proteins in cells, although unnatural amino acids such as those used in the Exemplification or otherwise known in the art are also contemplated.
- An “amino acid residue” refers to a derivative of an amino acid wherein either or both of the amino and carboxylic acid groups have been joined to another moiety, e.g, to form an amide, thioamide, sulfonamide, etc.
- carrier refers to an aromatic or non-aromatic ring in which each atom of the ring is carbon.
- nitro means -NO 2 ;
- halogen designates -F, -CI, -Br or - I;
- sulfhydryl means -SH;
- hydroxyl means -OH; and
- sulfonyl means -SO 2 " .
- carbonyl is art recognized and includes such moieties as may be represented by the general formulas:
- X50 is a bond or represents an oxygen or a sulfur
- R 55 represents a hydrogen, an alkyl, an alkenyl, -(CH 2 ) m -R 6 ior a pharmaceutically acceptable salt
- R56 represents a hydrogen, an alkyl, an alkenyl or -(CH 2 ) m -R6i, where m and R 6 j are defined above.
- X50 is an oxygen and R 55 or R56 is not hydrogen
- the formula represents an "ester”.
- X 50 is an oxygen
- R56 is as defined above, the moiety is referred to herein as a carboxyl group, and particularly when R 56 is a hydrogen, the formula represents a "carboxylic acid".
- R 57 is an electron pair, hydrogen, alkyl, cycloalkyl, or aryl.
- R 5 - 7 is as defined above.
- R50 and R 56 are as defined above.
- R 58 is one of the following: hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl or heteroaryl.
- sulfoxido refers to a moiety that may be represented by the general formula:
- Certain monomeric subunits of the present invention may exist in particular geometric or stereoisomeric forms.
- oligomers of the present invention may also be optically active.
- the present invention contemplates all such compounds, including cis- and trans-isomers, R- and S-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention.
- Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
- protecting group includes temporary substituents that protect a potentially reactive functional group from undesired chemical transformations.
- protecting groups include esters of carboxylic acids, silyl ethers of alcohols, and acetals and ketals of aldehydes and ketones, respectively.
- the field of protecting group chemistry has been reviewed. Greene et al. Protective Groups in Organic Synthesis 2 nd ed, Wiley, New York, (1991).
- the term “electron-withdrawing group” is recognized in the art, and denotes the tendency of a substituent to attract valence electrons from neighboring atoms, i.e., the substituent is electronegative with respect to neighboring atoms.
- Contemplated equivalents of the oligomers, subunits and other compositions described above include such materials which otherwise correspond thereto, and which have the same general properties thereof (e.g, biocompatible, antineoplastic), wherein one or more simple variations of substituents are made which do not adversely affect the efficacy of such molecule to achieve its intended purpose.
- the compounds of the present invention may be prepared by the methods illustrated in the general reaction schemes as, for example, described below, or by modifications thereof, using readily available starting materials, reagents and conventional synthesis procedures. In these reactions, it is also possible to make use of variants that are in themselves known, but are not mentioned here.
- B represents a sequence of from two to eight amino acid or amino acid analog residues, preferably from two to six amino acid or amino acid analog residues ;
- X is absent or represents O, S, or NR;
- Ri represents a substituted or unsubstituted alkyl, heteroalkyl, alkenyl, alkynyl, aryl, aralkyl, heteroaryl, heteroaralkyl, cycloalkyl, cycloalkylalkyl, heterocyclyl, or heterocyclylalkyl moiety, preferably a hydrophobic moiety, most preferably comprising from 1 to 8 carbon atoms;
- R 2 represents a substituted or unsubstituted alkyl, heteroalkyl, alkenyl, alkynyl, aryl, aralkyl, heteroaryl, heteroaralkyl, cycloalkyl, cycloalkylalkyl, heterocyclyl, or heterocyclylalkyl moiety, preferably a hydrophobic moiety, or R 2 and R, taken together, form a ring having from 5 to 7 members, optionally being substituted with from 1 to 5 substitutents and/or forming a polycyclic structure with one or more other rings, such as aryl, heterocyclyl, or carbocyclyl rings, e.g, a fused bicycle;
- R 3 represents a substituted or unsubstituted alkyl, heteroalkyl, alkenyl, alkynyl, aryl, aralkyl, heteroaryl, heteroaralkyl, cycloalkyl, cycloalkylalkyl, heterocyclyl, or heterocyclylalkyl moiety, preferably including a basic nitrogen atom (e.g, that is protonated under physiological conditions and/or its conjugate acid has a pKa in aqueous s olution b etween 6 and 1 2, preferably b etween 7 and 1 0); and R 7; R 8 and R 9 independently represent substituents selected from H and substituted or unsubstituted alkyl, heteroalkyl, aryl, aralkyl, heteroaralkyl, heteroaryl, cycloalkyl, cycloalkylalkyl, heterocyclyl, and heterocyclylalkyl, or where R 8 and R 9
- R 6 is absent, and in other embodiments, Rg includes a lower alkyl substituent.
- a terminating group W is a nitrogen- containing heterocyclyl substituent, preferably fused with an aryl or heteroaryl ring, attached to B through the nitrogen atom of the ring.
- Such terminating groups include tetrahydroisoquinoline, indoline, isoindoline, mo ⁇ holine, piperidine, etc.
- At least one of Ri, R 7 , R 8 or R 9 is a hydrophobic residue, preferably R 8 or R 9 .
- the hydrophobicity of the compound lies between a cLogP of around 2.0 to around 6.0, preferably between around 3.0 to around 6.0 most preferably between around 4.0 to around 5.5.
- compounds that possess an estimated cLogP value of outside this range are contemplated by this invention, for example compounds having a cLogP of around 3.0 to around 4.0.
- TAT HIN transactivator
- Peptides or analogs that include a sequence present in the highly basic region, such as CFITKALGISYGRKKRRQRRRPPQGS, or a sub sequence thereof such as YGRKKRRQRRR, can be conjugated to compounds of Formula I or II to aid in internalization and targeting those compounds to the intracellular milieu.
- the amino acid sequence of A or B is longer than defined with respect to Formula I or II to permit attachment of an amino acid sequence of sufficient length to promote internalization of the compound.
- the present invention further relates to therapeutic preparations comprising a subject compound and an excipient, such as a pharmaceutically acceptable or sterile excipient.
- the mvention further relates to a method for treating or preventing a condition characterized by MHC-II-mediated activation of T cells, comprising administering to an animal, such as a human, a composition comprising a compound as set forth above.
- the invention further relates to uses of a subject compound for the preparation of a pharmaceutical composition.
- Such pharmaceutical composition may be suitable for the treatment or prevention of a condition characterized by MHC-II-mediated activation of T cells.
- the condition is an autoimmune disorder, e.g, rheumatoid arthritis or multiple sclerosis.
- subject compounds can be utilized for a wide range of medical treatments.
- subject compounds may be employed in conjunction with solid organ transplants.
- the organ is selected from the group consisting of heart, liver, kidney, adrenal cortex, lung, intestine, pancreas, cornea and skin.
- the target organ is selected from the group consisting of heart, kidney, liver, cornea, and skin.
- a patient may be treated with a subject compound before or after receiving a transplant or allograft to prevent or ameliorate immune reactions that might lead to rejection of the transplant or graft vs. host disease.
- Sustained releases of the subject compounds e.g, from a biodegradable polymer implant, or from biodegradable polymeric microparticles or nanoparticles, are also contemplated.
- the compounds of the invention are also useful in treating diseases of the immune system characterized by unwanted, dysfunctional, or aberrant activation of T cells by MHC class II polypeptides.
- immune diseases include, but are not limited to, rheumatoid arthritis, juvenile arthritis, multiple sclerosis, Grave's disease, insulin-dependent diabetes, narcolepsy, psoriasis, systemic lupus erythematosus, ankylosing spondylitis, allograft rejection, Hashimoto's disease, myasthenia gravis, pemphigus vulgaris, thyroiditis, glomerulonephritis, insulitis, irritable bowel disease, pancreatitis, and primary biliary cirrhosis.
- autoimmune dysfunctions are often correlated with specific MHC types.
- DQ/DR haplotypes in humans and their associations with autoimmune diseases are well known, as described in U.S. Patent No. 6,045,796.
- the association between a disease and specific MHC types is so strong that determining the genotype and/or phenotype of a patient may not be required.
- Methods for determining the haplotype of an animal, such as a human are well known in the art, and any suitable technique may be used to make such a determination, for example, by analyzing DNA restriction fragment 1 ength p olymorphism (RFLP) using DNA probes that are specific for the MHC locus being examined. Methods of preparing probes for the MHC loci are known to those skilled in the art. See, for example, Greger'sen et al, (1986), Proc. Natl. Acad. Sci. U.S.A. 79:5966, which is incorporated herein by reference. The patient's haplotype may then be compared with haplotypes with known disease associations.
- RFLP DNA restriction fragment 1 ength p olymorphism
- HLA-DQ3.2B Approximately 70% of patients with insulin-dependent diabetes mellitus express HLA-DQ3.2B, DQA1, or DQB1, and susceptibility to the autoimmune dermatologic disease pemphigus vulgaris is linked to expression of HLA-DQB1.3 (Scharf et al, 1989, PNAS 86:6215-6219). Allergic reactions to ragweed are known to be associated with DR2 alleles. Marsh et al, (1989) Cold Spring Harb Symp Quant Biol 54:459-70, which is incorporated herein by reference. Methods for in vitro testing
- an excess of inhibitor is incubated with an antigen-presenting cell expressing an MHC allotype of interest, (e.g, a DR of interest) and a T cell clone which recognizes a selected peptide (e.g, tetanus toxin 830-843) and MHC molecule (e.g, the DR of interest), and the antigenic peptide itself.
- an antigen-presenting cell expressing an MHC allotype of interest, (e.g, a DR of interest) and a T cell clone which recognizes a selected peptide (e.g, tetanus toxin 830-843) and MHC molecule (e.g, the DR of interest), and the antigenic peptide itself.
- the assay culture is incubated for a sufficient time for T cell proliferation, such as four days, and proliferation is then measured using standard procedures, such as pulsing with tritiated thymidine during the last 18 hours of incubation. The
- a concentration range of inhibitor e.g, PBS, 1 mM AEBSF, 1 mM N-ethyl maleimide, 8 mM EDTA, 10 ⁇ M pepstatin A, 0.01% NaN 3 , 0.05% NP-40 and 5% DMSO
- In vivo activity may be determined in animal models, for example, by administering an antigen known to be restricted to the particular MHC molecule of interest, together with a test inhibitor of the present invention. T lymphocytes are subsequently removed from the animal and cultured with a dose range of antigen. Inhibition of stimulation is measured by conventional means, e.g, pulsing with 3 H- thymidine, and comparing to appropriate controls.
- an animal model will be genetically modified to express a human MHC class II allotype of interest in place of endogenous MHC class II molecules.
- Collagen induced arthritis is a model for rheumatoid arthritis (RA), induced by immunization with type II collagen in mice transgenic for an RA- associated human class II molecule (Rosloniec et al, J. Exp. Med. 185: 1113 (1997), & J. Immunol. 160: 2573-2578, (1998)).
- the present invention provides pharmaceutically acceptable compositions which comprise a therapeutically effective amount of one or more compounds of the subject invention, such as described above, formulated together with one or more pharmaceutically acceptable carriers (additives) and/or diluents for use in the treatment of aberrant T cell activation or an autoimmune disease, for example, rheumatoid arthritis or multiple sclerosis.
- pharmaceutically acceptable carriers additives
- diluents for use in the treatment of aberrant T cell activation or an autoimmune disease, for example, rheumatoid arthritis or multiple sclerosis.
- the pharmaceutical compositions of the present invention may be specially formulated for administration in solid or liquid form, including those adapted for the following: (1) oral administration, for example, drenches (aqueous or non-aqueous solutions or suspensions), tablets, capsules, boluses, powders, granules, pastes for application to the tongue; (2) parenteral administration, for example, by subcutaneous, intramuscular or intravenous injection as, for example, a sterile solution or suspension; (3) topical application, for example, as a cream, ointment or spray applied to the skin; or (4) intravaginally or intrarectally, for example, as a pessary, cream, foam, or suppository.
- the pharmaceutical preparations may be non-pyrogenic, i.e., do not elevate the body temperature of a patient.
- therapeutically effective amount means that amount of a compound, material, or composition comprising an inhibitor of the subject invention which is effective for producing some desired therapeutic effect. Such therapeutic effect may result from, for example, inhibition of unwanted T cell activation.
- phrases "pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
- wetting agents such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
- Methods of preparing these formulations or compositions include the step of bringing into association a compound of the present invention with the carrier and, optionally, one or more accessory ingredients.
- the formulations are prepared by uniformly and intimately bringing into association an inhibitor of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
- the active ingredient is mixed with one or more pharmaceutically acceptable c arriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents, such as, for
- compositions may be sterilized by, for example, filtration through a bacteria- retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions which can be dissolved in sterile water, or some other sterile injectable medium immediately before use.
- These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract such as the small or large intestines, optionally, in a delayed manner.
- embedding compositions which can be used include polymeric substances and waxes.
- the active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
- Liquid dosage forms for oral administration of the compounds of the invention include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs.
- the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
- inert diluents commonly used in the art, such as, for example, water or other solvents, solubilizing agents and
- Suspensions in addition to the active inhibitor(s) of the present invention, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
- suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
- aqueous and nonaqueous carriers examples include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate.
- polyols such as glycerol, propylene glycol, polyethylene glycol, and the like
- vegetable oils such as olive oil
- injectable organic esters such as ethyl oleate.
- Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
- These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents.
- microorganisms Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and other antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption such as aluminum monostearate and gelatin.
- agents which delay absorption such as aluminum monostearate and gelatin.
- a compound as described herein is administered conjointly with another therapeutic agent, e.g, another immunosuppressant agent, an agent or substance that triggers an unwanted immune response (for example, transplanted cells), or an agent that acts together with the immunosuppressant to achieve a desired therapeutic effect, such as an antiiflammatory agent.
- another therapeutic agent e.g, another immunosuppressant agent, an agent or substance that triggers an unwanted immune response (for example, transplanted cells), or an agent that acts together with the immunosuppressant to achieve a desired therapeutic effect, such as an antiiflammatory agent.
- another therapeutic agent e.g, another immunosuppressant agent, an agent or substance that triggers an unwanted immune response (for example, transplanted cells), or an agent that acts together with the immunosuppressant to achieve a desired therapeutic effect, such as an antiiflammatory agent.
- the compound and agent or substance can be administered in a single composition such as a tablet, in separate compositions simultaneously, or in separate compositions at different times as part of
- the compounds of the present invention are administered as pharmaceuticals, to humans and animals, they can be given per se or as a pharmaceutical composition containing, for example, 0.1 to 99.5% (more preferably, 0.5 to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
- parenteral administration and " administered p arenterally” a s used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without 1 imitation, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticulare, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
- the selected dosage level will depend upon a variety of factors including the activity of the particular inhibitor employed, or the ester, salt or derivative thereof, the route of administration, the time of administration, the rate of excretion of the particular compound being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular inhibitor employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
- the injectable solution is formulated such that the total amount of inhibitor agent (or agents) provided in 100, 50, 25, 10, 5, 2.5, or 1 cc injections would provide an ED 50 dose to a patient, and p referably 1 ess than 100 times the ED 5 o, and even more preferably less than 10 or 5 times the ED 50 .
- Potential inhibitors may be assessed for ED 50 values for any inhibition, including for example therapeutic activity towards rheumatoid arthritis or multiple sclerosis, using any of a number of well known techniques in the art, such as those described above.
- the compounds of the present invention are amenable to combinatorial chemistry and other parallel synthesis schemes (see, for example, PCT WO 94/08051).
- the result is that large libraries of related compounds, e.g, a variegated library of compounds represented by formula I or II above, can be screened rapidly in high throughput assays in order to identify potential lead compounds, as well as to refine the specificity, toxicity, and/or cytotoxic-kinetic profile of a lead compound, e.g, by using one of the assays described herein.
- a combinatorial library for the purposes of the present invention is a mixture of chemically related compounds which may be screened together for a desired property.
- the preparation of many related compounds in a single reaction greatly reduces and simplifies the number of screening processes which need to be carried out. Screening for the appropriate physical properties can be done by conventional methods.
- the substrate aryl groups used in the combinatorial reactions can be diverse in terms of the core aryl moiety, e.g, a variegation in terms of the ring structure, and/or can be varied with respect to the other substituents.
- MS mass spectrometry
- a variegated library of compounds can be provided on a set of beads utilizing the strategy of divide-couple-recombine (see, for example, Houghten (1985) PNAS 82:5131-5135; and U.S. Patents 4,631,211; 5,440,016; 5 ,480,971).
- the beads are divided into separate groups equal to the number of different substituents to be added at a particular position in the library, the different s ubstituents c oupled in separate reactions, and the beads recombined into one pool for the next iteration.
- the divide-couple-recombine strategy can be carried out using an analogous approach to the so-called "tea bag” method first developed by Houghten, where compound synthesis occurs on resin sealed inside porous polypropylene bags (Houghten et al. (1986) PNAS 82:5131-5135). Substituents are coupled to the compound-bearing resins by placing the bags in appropriate reaction solutions, while all common steps such as resin washing and deprotection are performed simultaneously in one reaction vessel. At the end of the synthesis, each bag contains a single compound.
- combinatorial libraries in a spatially addressable form may be generated by light-directed synthesis (Dower et al. (1991) Annu Rep Med Chem 26:271-280; Fodor, S.P.A. (1991) Science 251 :767; Pirrung et al. (1992) U.S. Patent No. 5,143,854; Jacobs et al. (1994) Trends Biotechnol 12:19-26).
- the spatial resolution of photolithography affords miniaturization. This technique can be carried out tlirough the use protection/deprotection reactions with photolabile protecting groups.
- a synthesis substrate is prepared for coupling through the covalent attachment of photolabile nitroveratryloxycarbonyl (NNOC) protected amino linkers or other photolabile linkers.
- NOC photolabile nitroveratryloxycarbonyl
- Light is used to selectively activate a specified region of the synthesis support for coupling. Removal of the photolabile protecting groups by light (deprotection) results in activation of selected areas. After activation, the first of a set of amino acid analogs, each bearing a photolabile protecting group on the amino terminus, is exposed to the entire surface. Coupling only occurs in regions that were addressed by light in the preceding step.
- the reaction is stopped, the plates washed, and the substrate is again illuminated through a second mask, activating a different region for reaction with a second protected building block.
- the pattern of masks and the sequence of reactants define the products and their locations. Since this process utilizes photolithography techniques, the number of compounds that can be synthesized is limited only by the number of synthesis sites that can be addressed with appropriate resolution. The position of each compound is precisely known; hence, its interactions with other molecules can be directly assessed.
- the subject method utilizes a compound library provided with an encoded tagging system.
- a recent improvement in the identification of active compounds from combinatorial libraries employs chemical indexing systems using tags that uniquely encode the reaction steps a given bead has undergone and, by inference, the structure it carries.
- this approach mimics phage display libraries, where activity derives from expressed peptides, but the structures of the active peptides are deduced from the corresponding genomic DNA sequence.
- the first encoding of synthetic combinatorial libraries employed DNA as the code.
- sequenceable bio-oligomers e.g, oligonucleotides and peptides
- binary encoding with additional non-sequenceable tags.
- a combinatorial library of nominally 7 7 ( 823,543) peptides composed of all combinations of Arg, Gin, Phe, Lys, Val, D-Val and Thr (three- letter amino acid code), each of which was encoded by a specific dinucleotide (TA, TC, CT, AT, TT, CA and AC, respectively), was prepared by a series of alternating rounds of peptide and oligonucleotide synthesis on solid support.
- compound libraries can be derived for use in the subject method, where the oligonucleotide sequence of the tag identifies the sequential combinatorial reactions that a particular bead underwent, and therefore provides the identity of the compound on the bead.
- oligonucleotide tags permits extremelyly sensitive tag analysis. Even so, the method requires careful choice of orthogonal sets of protecting groups required for alternating co-synthesis of the tag and the library member. Furthermore, the chemical lability of the tag, particularly the phosphate and sugar anomeric linkages, may limit the choice of reagents and conditions that can be employed for the synthesis of non-oligomeric libraries.
- the libraries employ linkers permitting selective detachment of the test compound library member for assay. Peptides have also been employed as tagging molecules for c ombinatorial libraries. Two exemplary approaches are described in the art, both of which employ branched linkers to solid phase upon which coding and ligand strands are alternately elaborated.
- branched linkers are employed so that the coding unit and the test compound can both be attached to the same functional group on the resin.
- a cleavable linker can be placed between the branch point and the bead so that cleavage releases a molecule containing both code and the compound (Ptek et al. (1991) Tetrahedron Lett 32:3891-3894).
- the cleavable linker can be placed so that the test compound can be selectively separated from the bead, leaving the code behind. This last construct is particularly valuable because it permits screening of the test compound without potential interference of the coding groups. Examples in the art of independent cleavage and sequencing of peptide library members and their corresponding tags has confirmed that the tags can accurately predict the peptide structure.
- An alternative form of encoding the test compound library employs a set of non-sequencable electrophoric tagging molecules that are used as a binary code (Ohlmeyer et al. (1993) PNAS 90:10922-10926).
- Exemplary tags are haloaromatic alkyl ethers that are detectable as their trimethylsilyl ethers at less than femtomolar levels by electron capture gas chromatography (ECGC). Nariations in the length of the alkyl chain, as well as the nature and position of the aromatic halide substituents, permit the synthesis of at least 40 such tags, which in principle can encode 2 40 (e.g, upwards of 10 12 ) different molecules.
- Both libraries were constructed using an orthogonal attachment strategy in which the library member was linked to the solid support by a photolabile linker and the tags were attached through a linker cleavable only by vigorous oxidation. Because the library members can be repetitively partially photoeluted from the solid support, library members can be utilized in multiple assays. Successive photoelution also permits a very high throughput iterative screening strategy: First, multiple beads are placed in 96-well microtiter plates; second, compounds are partially detached and transferred to assay plates; third, a metal binding assay identifies the active wells; fourth, the co ⁇ esponding beads are rea ⁇ ayed singly into new microtiter plates; fifth, single active compounds are identified; and sixth, the structures are decoded.
- the peptidomimetic compounds of the present invention may be synthesized using techniques such as those described above to provide a large, highly diverse library of candidate inhibitors, because compounds of the invention can be readily prepared by successively forming a series of carbon-heteroatom bonds, such as amide or urea bonds, under mild conditions.
- a series of carbon-heteroatom bonds such as amide or urea bonds
- a wide range of combinations and permutations of these subunits may be rapidly and easily synthesized and tested for biological activity.
- Peptidomimetic compounds were prepared by assembly of building blocks using standard solid phase peptide chemistry (R.B. Merrifield, J. Am. Chem. Soc. 85, 2149-2154 (1963), G. Barany, R.B. Merrifield in The Peptides, Nol. 2 (eds. E. Gross, J. Meienhofer) 1-284 (Academic, New York; 1980)) in a peptide synthesizer (ACT90, Advanced ChemTech) and purified by high performance liquid chromatography (HPLC).
- standard solid phase peptide chemistry R.B. Merrifield, J. Am. Chem. Soc. 85, 2149-2154 (1963)
- ACT90 Advanced ChemTech
- HPLC high performance liquid chromatography
- HPLC was conducted on a Vision Chromatograph (PerSeptive Biosystems). Analytical HPLC was performed in reverse phase mode using waters ⁇ Bondapak C ⁇ 8 columns (0.46 x 25 cm, 5 ⁇ or 0.39 x 30 cm, 10 ⁇ ) or Nucleosil C ⁇ 8 columns (0.46 x 25 cm, 5 ⁇ or 0.4 x 30 cm, lO ⁇ ) from CS-Chromatographie Service, Langerwehe, Germany. Preparative HPLC was performed in reversed phase mode using Waters ⁇ Bondapak C ⁇ 8 columns (1.9 x 30 cm, 10 ⁇ ) or Nucleosil C ⁇ 8 columns (2.0 x 30 cm, lO ⁇ ) from CS-Chromatographie Service.
- N-(2-phenylethyl)ethanolamine was prepared from 2-phenylethyl chloride and ethanolamine according to literature procedure (J. Barbiere, Bull. Soc. Chim. Fr. 5, 7, 1940, 621).
- Commercially available Fmoc amino acids, HOBt, TBTU and PyBOP were purchased from Advanced ChemTech, Novabiochem, Bachem, Neosystems or RSP Amino Acid Analogues. All other chemicals and solvents were purchased from Merck Darmstadt or Sigma-Aldrich-Fluka and used without further purification.
- DMF was dried over molecular sieves 4 A for at least 4 weeks, stirred over acidic aluminium oxide for 20 minutes to remove traces of amines, and filtered through a 0.2 ⁇ m filter prior use.
- Table 1 (a, b and c) lists certain compounds according to Formulae I and II that are exemplary of the invention.
- Table 2 lists other compounds examined for their immunomodulatory and other properties using the assays described herein.
- peptidomimetics shorter than the heptamers set forth in Table 1 are useful for certain applications. As such, shorter peptidomimetics also form part of this invention. Prefe ⁇ ed lengths of these shorfter peptides are terra- or pentamers.
- Methyl N-(diphenylmethylen)glycinate (M.J. O'Donnell, R. L. Polt, J. Org. Chem. 1982, 47, 2663-2666) were added to a solution of 4.87 g KOtBu in 100 ml dry THF at -5 °C and the resulting solution was sti ⁇ ed at 0 °C for 15 min. This solution was added over 3.5 h to a solution of 7.1 ml isobutyric acid chloride in 300 ml dry THF at -78 °C. After addition was completed the orange reaction mixture was allowed to reach r.t.
- Triphenylphosphineoxide and 31.3 ml DBU were added to a solution of 30.5 g of the dipeptide I in 38 ml dry carbontetrachloride, 38 ml dry acetonitrile and 38 ml dry pyridine at 0 °C.
- the resulting mixture was sti ⁇ ed at r.t. for 20 h.
- the solvents were removed under reduced pressure and the residue was coevaporated with toluene (4 x 150 ml).
- the resulting residue was dissolved in 900 ml DCM. The solution was washed with aq.
- the peptididomimetic was prepared by Fmoc solid phase synthesis starting with H ⁇ PhPro-2-chlorotrityl chloride resin (2416 mg, 1.3 mmol) in a 50 ml reaction vessel fitted with a frit in the bottom (Advanced ChemTech ACT90).
- Resin swelling was carried out by treating the resin with DMF (4x1 min.).
- the resin was deprotected using a 20% solution of piperidine in DMF (1x3 min, 1x7 min, 20 ml each) and subsequently washed with DMF (10x20 ml).
- Acylation was carried out by addition of FmocNleOH (1380 mg, 3.9 mmol), DMF (8.2 ml), HOBt (600 mg, 3.9 mmol), and DIG (0.61 ml, 3.9 mmol).
- the coupling was left for 18 h, washed with DMF (7x20 ml).
- a small portion was checked for completion of acylation using the Chloranil test (J. Blake, CH. Li, Int. J.
- the resin was capped using a solution of acetic anhydride (2 M) and DMAP (0.1 M) in DMF (20 ml, 1 xlO min) and subsequently washed with DMF (12x20 ml).
- the resin was deprotected, washed, capped and washed as above and coupled with FmocTicOH (1.56 g, 3.9 mmol), TBTU (1.26 g, 3.9 mmol) and DIPEA (0.71 ml, 4.16 mmol) in 8 ml DMF for 75 min.
- the resin was deprotected, washed, capped and washed as above and coupled with FmocGpg(Pmc)OH (1.35 g, 1.95 mmol), HOBt (0.3 g, 1.95 mmol) and DIC (0.305 ml, 1.95 mmol) in 7 ml DMF for 16 h.
- the resin was deprotected, washed, capped and washed as above and coupled with FmocChaOH (1.54 g, 3.9 mmol), HOBt (0.6 g, 3.9 mmol) and DIC (0.61 ml, 3.9 mmol) in 8 ml DMF for 3 h.
- Deprotection and washing was carried out as above and capping was performed by treatment with acetic anhydride (2 M) and DMAP (0.1 M) in 20 ml DMF for 3 x 20 min.
- the resin was washed with DMF (12x20 ml), MeOH (3x50 ml), Et 2 0 (3x40 ml) and dried in vacuo.
- the resin was treated with 33 ml DCM / trifluoroethanol / acetic acid (8:1:1) at r.t. for 45 min, filtered and washed with 65 ml DCM / trifluoroethanol / acetic acid (8:1:1) and 100 ml DCM.
- the solvent was removed under reduced pressure and the residue was dissolved in 80 ml ethyl acetate.
- the solution was washed with aq. 5% KHS0 solution (1 x 40 ml), saturated aq. NaHCO 3 solution and pH 7 phosphate buffer, dried over Na 2 SO , filtered and evaporated to dryness.
- the residue was treated with 20 ml of TFA / water / thioanisole / 1,2-ethanedithiol / triethylsilane 85.5:5:5:2.5:2 for 3.7 h at r.t.
- the product was precipitated by adding 550 ml of chilled diethyl ether to the solution.
- the suspension was centrifuged at 3300 rpm for 10 min, the supernatant was discarded, the precipitate was resuspended in chilled ether, centrifuged again and the supernatant was once again discarded.
- the precipitate was dissolved in acetonitrile and 0.1%) aq TFA.
- the organic solvents were evaporated under reduced pressure and the aq. solution was freeze dried.
- the crude product (931 mg) was purified by HPLC using a gradient of acetonitrile in 0.1% aq TFA to yield 584 mg pure Ac-Cha-Gpg- Tic-Nle- ⁇ PhPro-[S ⁇ (oxaz)L]NMe 2 x TFA.
- This peptiodomimetic was prepared using similar methodology to that described for Example 2.4 but on a smaller scale using less resin, a 25 ml reaction vessel and 7 ml solvent portions for swelling, washing, capping, deprotection and coupling during solid phase synthesis.
- Coupling on ⁇ PhPro was performed using FmocNleOH, HOBt, DIC (3 equivalents each) for 16 h
- coupling on Nle was done using FmocTicOH (3eq)
- TBTU 3 eq
- DIPEA 3.2 eq
- coupling on Tic was done using FmocArg(Pmc)OH, HOBt, DIC (3 eq each) for 16 h
- coupling on Arg was done using FmocChaOH, HOBt, DIC (3 eq each) for 3 h.
- Peptiodomimetic P60 (Gpg) was prepared as described in Example 3, except that the resin was coupled in coupling step 1 with FmocMetOH instead of FmocNleOH, and in coupling step 3 with FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt and DIC (3 eq each).
- MALDI-TOF MS: M/Z 1082.54 (MH+), 1120.51 (MK+).
- Peptiodomimetic P43 (Arg) was prepared as described in Example 3, except that the resin was coupled in coupling step 1 with FmocMet(0)OH instead of FmocNleOH.
- MALDI-TOF MS: M/Z 1072.57 (MH+).
- Peptiodomimetic P47 was prepared as described in Example 3, except that the resin was coupled in coupling step 1 with FmocMet(0)OH instead of FmocNleOH , and in coupling step 3 with FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each).
- MALDI-TOF MS: /Z 1098.73 (MH+), 1120.70 (MNa+), 1136.68 (MK+).
- the resin was prepared using similar methodology to that described in Example 2 step 2.3 from FmocNleOH (4.37 g) and 2-chlorotrityl chloride resin (7.45 g, 0.83 mmol/g, Novabiochem) to yield 7.77 g HNle-2-chlorotrityl resin (loading: 0.50 mmol/g).
- the peptidomimetics were prepared using similar methodology to that described for Example 1.4 by deprotection and coupling using HNle-2-chlorotrityl resin (2.52 g). Coupling on Nle was performed using TBTU (1.09 g, 1.35 mmol), DIPEA (0.62 ml, 1.44 mmol) and FmocTicOH (1.36 g, 1.35 mmol) in 7 ml DMF with a coupling time of 2.5 h.
- the solvent was evaporated under reduced pressure and the residue was treated with 10 ml of TFA / water / thioanisole / 1,2-ethanedithiol / triethylsilane 85.5:5:5:2.5:2 for 4 h at r.t.
- the product was precipitated by adding 500 ml of chilled diethyl ether to the solution. The suspension was centrifuged at 3300 rpm for 10 min, the supernatant was discarded, the precipitate was resuspended in chilled ether, centrifuged again and the supernatant was once again discarded. The precipitate was dissolved in acetonitrile and 0.1% aq TFA. The organic solvents were evaporated under reduced pressure and the aq.
- Peptiodomimetic P82 was prepared using similar methodology to that described for Example 3 but using HNle-2-chlorotrityl resin (Example 7.1) instead of H ⁇ PhPro-2-chlorotrityl chloride resin. Coupling on Nle was done using FmocTicOH (3eq), TBTU (3 eq) and DIPEA (3.2 eq) for 1.5 h, coupling on Tic was done using FmocArg(Pmc)OH, HOBt, DIC (3 eq each) for 14 h, coupling on Arg was done using FmocChaOH, HOBt, DIC (3 eq each) for 3 h.
- Peptiodomimetic P71 (Gpg) was prepared as P82 in Example 7 except for that crude Ac-Cha-Arg(Pmc)-Tic-Nle-OH was reacted with N-methylbenzylamine (4 eq) instead of N-(2-phenylethyl)amine. HPLC using a gradient of acetonitrile in 0.1 %> aq TFA yielded the desired product.
- Peptiodomimetic P72 was prepared using similar methodology to that described for P71 in Example 8, except for using racemic FmocDiscOH instead of FmocTicOH in coupling step 1. The resulting two diastereomers were separated at the final HPLC step using a gradient of acetonitrile in 0.1% aq TFA and denoted as described in Example 6.
- MALDI-TOF MS (P72-2): M/Z 731.56 (MH+), 753.55 (MNa+), 769.52 (MK+).
- Peptiodomimetic P76 was prepared using similar methodology to that described for P72 in Example 9, except for using FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each) in coupling step 2.
- the resulting two diastereomers were separated at the final HPLC step using a gradient of acetonitrile in 0.1% aq TFA and denoted as described in Example 6.1.
- MALDI-TOF MS (P76-2): M/Z 757.37 (MH+), 779.34 (MNa+), 795.31 (MK+).
- Resin swelling was carried out by treating the resin with DMF (4x1 min.).
- Peptidomimetic P67 was prepared as PI in Example 10 except for that the resin was coupled in coupling step 2 with FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each).
- Example 11 Preparation of Ac-Cha-Arg-Disc-Met-NH (P12) & Ac-Cha-Gpg- Disc-Met-NH 2 (P66)
- Peptiodomimetic P12 was prepared as described for PI in Example 10, except for using racemic FmocDiscOH instead of FmocTicOH in coupling step 1. The resulting two diastereomers were separated at the final HPLC step using a gradient of acetonitrile in 0.1% a q TFA and denoted a s described in Example 6.
- MALDI-TOF MS (P12-2): M/Z 645 (MH+), 667 (MNa+).
- Peptiodomimetic P66 was prepared as described for PI in Example 10, except for using racemic FmocDiscOH instead of FmocTicOH in coupling step 1 and using FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each) in coupling step 2.
- the resulting two diastereomers were separated at the final HPLC step using a gradient of acetonitrile in 0.1% aq TFA and denoted as described in Example 6.
- MALDI-TOF MS (P66-2): M/Z 671.29 (MH+).
- Peptidomimetic P80 was prepared as P31 except for using FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each) in coupling step 3.
- MALDI-TOF MS: M/Z 859.19 (MH+), 896.14 (MK+).
- the peptidomimetic P98 was prepared using similar methodology to that described for Example 2.4 by deprotection and coupling using FmocN(Bn)CH 2 CH 2 OCH 2 CH 2 0-2-chlorotrityl resin (4.93 g, 2.2 mmol), starting with a deprotection step. Coupling on HN(Bn)CH 2 CH 2 OCH 2 CH 2 0-2-chlorotrityl resin was performed using HOBt (2.5 eq) DIC (2.5 eq) and FmocNleOH (2.5 eq) for 21 h .
- Peptidomimetic P101 was prepared as P98 except for using FmocGpg(Pmc)OH, HOBt, DIC (1.5 eq each) instead of FmocArg(Pmc)OH, HOBt, DIC (3 eq each) in coupling step 3.
- MALDI-TOF MS: M/Z 845.39 (MH+), 867.38 (MNa+), 883.36 (MK+).
- Example 14 Competitive binding of compounds to MHC-II proteins DR4Dw4 and DR1
- a 10 fold dilution series of compounds (4 nM - 400 ⁇ M) in 25% (v/v) DMSO/50 mM sodium phosphate, 150 mM sodium chloride, pH 7.5 (PBS) was prepared in a 96 well polypropylene plate blocked with 1% BSA/PBS for 1 hours at room temperature.
- the MHC-compound interaction mixtures were prepared in a similarly blocked 96 well polypropylene plate as follows; to 40 ⁇ l 2x buffer (PBS, 50 mM, pH 7.5, 2% (w/v) NP-40, 3.2 mM EDTA, 6.25% protease inhibitor cocktail : 0.32 g/1 of Chymostatin, Antipain, Pepstatin A, Soybean trypsin inhibitor and Leupeptin each) were given 10 ⁇ l 0.8 ⁇ M indicator peptide, 20 ⁇ l compound solution of the appropriate dilution and 10 ⁇ l MHC-II DRA1*0101 DRB1*0401 (0.06 g/1), DRA1*0101 DRB1*0101 (0.03 g/1) or DRA1*0101 DRB1*0404 (0.015 g/1) in 0.5%) (w/v) NP-40/PBS. Interaction mixtures lacking the peptidomimetic compound and both peptide mimetic compound and M
- High binding capacity black FIA plates (Greiner, capture plates) were previously coated with 100 ⁇ l well mAb LB3.1 (0.01 g/1) in PBS overnight at 4 °C, and subsequently blocked with 200 ⁇ l/well 1% (w/v) BSA/PBS for lh at room temperature.
- Table 3 a shows (in bold) the improved affinity of Gpg-containing compounds of the invention to certain MHCII proteins as measured by IC50 according to this example.
- Table 3b shows the affinities of compounds according to Formula I to the same MHCII proteins.
- Figure 1 shows the improved IC50 of P53 (Gpg-containing) against MHCII 0401, a prefe ⁇ ed heptamer compound of the invention, compared to the Arg-containing peptide (P51), and
- Figure 3 shows the improved IC 50 of P74 (Gpg-containing) against MHCII 0101, a prefe ⁇ ed tetramer compound of the invention, compared to the Arg-containing peptide (P71).
- Figure 3 shows the improved IC 50 of P69 (Gpg-containing), a prefe ⁇ ed tetramer compound of the invention, compared to the Arg-containing peptide (P82).
- Figure 4 shows the improved IC50 of P74 (Gpg-containing) against 0401, a prefe ⁇ ed tetramer compound of the invention, compared to the Arg-containing peptide (P71).
- Figure 5 shows the improved IC 50 of PI 01 (Gpg-containing), a prefened tetramer compound of the invention, compared to the Arg-containing peptide (P98).
- Example 15 Competitive binding of compounds to MHC II proteins expressed on PRIESS andLG2 cells
- the cells were cultured in RPMI 1640 (lx Gibco 42401- 042) medium, supplemented with 10% heat-inactivated FCS (Biowhittaker), 2 mM L-Glutamine, 1% non-essential amino acids stock (Gibco 11140-035; lOOx MEM), 1 mM sodium pyruvate, 0.1 mg/ml Canamycin and 3.4 ppm ⁇ -mercaptoethanol.
- FCS heat-inactivated FCS
- 2 mM L-Glutamine 1% non-essential amino acids stock
- Canamycin 3.4 ppm ⁇ -mercaptoethanol.
- the cells were re-suspended in medium containing 1% FCS at a density of 2.5xl0 6 cells/ml.
- the assay was performed in sterile 96 well polystyrene microtiter plates.
- a 10 fold dilution series of compounds (16 nM - 1615 ⁇ M) in 1% FCS was prepared from 5 or 10 mM compound stock solutions in 10% DMSO/water. 50 ⁇ l of each compound dilution were added in duplicates to 50 ⁇ l of a 16 ⁇ M solution of indicator peptide in 1% FCS.
- Cell binding was initiated by adding 100 ⁇ l of 2.5x10 6 cells/ml 1% FCS to each well. Controls were included containing the DMSO concentration present in the solution with the highest compound concentration. The cells were incubated at 37 °C, 6% C0 2 .
- the cells were washed with 200 ⁇ l PBS and lysed in 200 ⁇ l lysis buffer (50 mM sodium phosphate, 150 mM sodium chloride, 1% (w/v) NP-40, 25 mM iodoacetamide, 1 mM PMSF, 3.1 % protease inhibitor cocktail: 0.32 g/1 of Chymostatin, Antipain, Pepstatin A, Soybean trypsin inhibitor and Leupeptin each, pH 7.5) for 10 min.
- 200 lysis buffer 50 mM sodium phosphate, 150 mM sodium chloride, 1% (w/v) NP-40, 25 mM iodoacetamide, 1 mM PMSF, 3.1 % protease inhibitor cocktail: 0.32 g/1 of Chymostatin, Antipain, Pepstatin A, Soybean trypsin inhibitor and Leupeptin each, pH 7.5
- High binding capacity black FIA plates (Greiner, capture plates) were previously coated overnight at 4 °C with 100 ⁇ l/well mAb LB3.1 (0.01 g/1) in 50 mM sodium phosphate, 150 mM sodium chloride, pH 7.5 (PBS), and subsequently blocked with 200 ⁇ l well 1% (w/v) BSA/PBS for lh at room temperature.
- Table 3a shows the improved affinity of Gpg-containing compounds of the mvention to certain MHCII proteins expressed on the surface of cells sa measured by IC 50 according to this example.
- Table 3b shows the affinity of compounds of Formula I towards the same protreins expressed on said cells.
- Figure 6 shows the improved IC 50 for inhibition of peptide binding to MHC protein expressed on LG2 cells of P47 (Gpg-containing), a prefe ⁇ ed heptamer compound of the mvention, compared to the Arg-containing peptide (P43).
- Figure 7 shows the improved IC 5 0 for inhibition of peptide binding to MHC protein expressed on Priess cells of P74 (Gpg-containing), a prefe ⁇ ed tetramer compound of the mvention, compared to the Arg-containing peptide (P71).
- the stability of the peptidomimetic compounds was determined in rat (Charles River Laboratories, Sulzfeld), mouse (Charles River Laboratories, Sulzfeld) and human (Bayerisches Rotes Fun, Munchen) blood plasma (E.R. Ga ⁇ ett and M.R. Gardner, J Pharmaceutical Sciences 71 (1982) 14-25).
- Table 3 a shows the improved stability (in bold) of Gpg-containing compounds of the invention in blood plasma
- Figure 8 displays improved stability (arbitrary units) of: a Gpg-containing heptamer compound of the invention (P53) in rat plasma after 24 hours compared to the Arg-containing equivalent (P51); a Gpg-containing tetramer compound of the mvention (P66-1) compared to the Arg- containing equivalent (PI 2-1); a Gpg-containing tetramer compound of the invention (P69 compared to the Arg-containing equivalent (P82); other prefe ⁇ ed compounds of the invention compared to their Arg-containing equivilent.
- Table 3b shows improved stability (in bold) of compounds according to Formula I compared to compounds with an NH 2 terminating group.
- Example 17 Stability of compounds towards degradation by Cathepsin Bl andD
- the stability of the peptidomimetic compounds towards lysosomal degradation was examined by incubation with Cathepsin Bl (EC 3.4.22.1 from bovine spleen; Sigma-Aldrich, Taufkirchen; dissolved at 10000 U/l in ddH 0) and D (EC 3.4.23.5 from bovine spleen; Sigma-Aldrich, Taufkirchen; dissolved at 10000 U/l in ddH 2 0) for four hours at 37 °C using a compound concentration of 50 ⁇ M and an enzyme/substrate ratio of 0.4 U/ ⁇ mol.
- the samples contained 25 ppm 4-isopropyl benzyl alcohol (IPBA; Sigma-Aldrich, Taufmaschinen) as internal standard.
- Assay buffer was prepared by adding 35 ⁇ l of a 1% IPBA in DMSO solution and 28 ⁇ l of a 10000 U/l Cathepsin Bl or Cathepsin D stock solution to 14 ml of 100 mM sodium acetate, 1 mM EDTA, 1 mM DTT, pH 5.00 or 100 mM sodium acetate, pH 4.50, respectively. 8.8 ⁇ l of a 5 mM (or 4.4 ⁇ l of a 10 mM) compound stock solution (in 10% DMSO/water) were placed into a 1.5 ml Eppendorf tube.
- the reaction was started by adding 875 ⁇ l fully supplemented assay buffer to each tube, whirlmixing and incubation at 37 °C At 0 and 4 hours 400 ⁇ l samples were taken and the enzyme was inactivated by addition of 40 ⁇ l 50% TFA aq. The samples were kept frozen at -20 °C until analysis by RP-HPLC (200 ⁇ l injection volume; Nucleosil 100-5 C18, 12.5 x 4.6 cm; Gradient: 20-50% acetonitrile in 30 min).
- Cathepsin Bl and Cathepsin D were controlled by incubation of Ac-Cha-RAMASL-NH 2 and QYIKANSLFIGITELK, respectively, which both were completely degraded within 4 hours.
- Table 3 (a, b and c) shows the stability of compounds of the invention against certain Cathepsin enzymes.
- Example 18 In vivo inhibition of T cell activation from 0401(DR4) and 0404(DR14) chimeric MHCII-mice by co-immunisation
- Mouse strains DR4 and DR14 carry chimeric MHC-II transgenes that encode the N-terminal domains of the respective DR molecules (forming the peptide binding site) and the remaining (2nd extracellular domains, transmembrane and intracytoplasmic domains) of the murine class II molecule I Ed. These strains are deficient of other murine class II, and thus, all helper T cell responses are triggered by peptides presented in the respective human MHC-II binding site.
- DR-transgenic mice were co- immunized with a pre-defined dose of protein antigen and different amounts of the compound antagonist to be tested.
- both antigen and compound were emulsified together in complete Freund's adjuvant (CFA), and thus, a direct competition between the two components for presentation by DR was tested.
- CFA complete Freund's adjuvant
- Readout of the assay is ex vivo antigen-specific activation of T cells from regional lymph nodes explanted 9 days after co-immunization.
- antigen dose-response was investigated, and the curves from mice immunized with antigen were compared to those from mice co-immunized with antigen+compound.
- the dose response curves were generated using lymph node cells pooled at equal numbers from 2-3 mice per experimental group. The experimental system also permits assessment of inherent antigenicity of the compound antagonist.
- Figure 14 shows improved in-vivo inhibitory effect of a prefe ⁇ ed tetramer compound of the invention (P69) compared to the Arg-contaiing equivilent (P82).
- Figure 15 shows the in-vivo inhibitory effect of a prefe ⁇ ed tetramer and heptamer compounds of the invention.
- mice were co-immunised with 50 ⁇ g protein and 210 nM compound antagonist in final 100 ⁇ l emulsion into the tail base.
- Antigen + Compound and CFA are mixed 1:1 vol/vol. The best results are obtained using DR 4 mice immunised with HEL and DR 14 mice immunized with OVA.
- mice were injected at the tail-base as follows: Holding the tail of a mouse with thumb and middle finger, the index finger was placed under the base of the mouse's tail. The needle of the syringe was inserted about 1.5 cm from the tail base (hairy end) under the skin and pushed about 1 cm into the tail. 100 ⁇ l emulsion was injected into the mouse. After 9 days, mice were killed and lymph nodes removed.
- T-cell activation was tested using T-cells and antigen-presenting cells isolated from the lymph nodes of chimeric DR4-IE transgenic mice (Taconic, USA) previously co-immunized with hen egg lysozyme plus compound, or DR14-IE transgenic mice co-immunized with ovalbumin plus compound according to standard procedures (Adorini et al, 1988, Mueller et al, 1990; Current Protocols in Immunology, Nol. 2, 7.21; Ito et al, 1996).
- Antigen-Titration 600 ⁇ g/ml - 0.82 ⁇ g/ml 100 ⁇ l antigen solution 100 ⁇ l cells (2.5 x 105 cells)
- HEL Lysozyme Grade III: From Chicken Egg White; Sigma L-7011
- PBS OVA Albumine, Chicken Egg; Sigma A-2512
- PBS PPD Teuberculin PPD; Statens Serum Institut; Order-no. 2391
- HEL Dilute stock solution 1:83 with HL-1 medium (120 ⁇ g/ml) - final concentration in well 30 ⁇ g/ml.
- OVA Dilute stock solution 1:48 with HL-1 medium (84 ⁇ g/ml) -» final 21 ⁇ g/ml.
- PPD Dilute stock solution 1:10 with HL-1 medium (100 ⁇ g/ml) -» final 25 ⁇ g/ml.
- Example 19 In vitro inhibition of T cell activation by compounds of the invention
- FIG. 9 displays a dose- response curve demonstrating improved immunosuppressive properties as measured by a T-cell activation assay of P53 (Gpg-containing), a prefe ⁇ ed heptamer compound of the invention, compared to the Arg-containing peptide (P51).
- a dose- response curve of another compound of the invention (P41-1) is also shown.
- Figure 10 displays a dose-response curves demonstrating the immunosuppressive properties as measured by a T-cell activation assay of various prefe ⁇ ed compounds of the invention; P69, P74 ,P101 and P53.
- mice carrying a chimeric mouse- human class II transgene with an RA-associated peptide binding site were tested as follows to inhibit the proliferative T cell response of antigen-primed lymph node cells from mice carrying a chimeric mouse- human class II transgene with an RA-associated peptide binding site, and lack murine class II molecules (Muller et al, 1990; Woods et al, 1994; Cu ⁇ ent Protocols in Immunology, Nol. 2, 7.21; Ito et al, 1996).
- the immunization takes place in vivo, but the inhibition and readout are ex vivo.
- Transgenic mice expressing MHC class II molecules with binding sites of the RA associated molecule, DRB*0401 were commercially obtained. These mice lack murine MHC class II, and thus, all Th responses are channelled through a single human RA-associated MHC class II molecule (Ito et al. 1996). These transgenic mice represent a model for testing human class II antagonists.
- Example 20 Inhibition of IL-2 secretion from T-cell hybridoma cells by compounds of the invention
- the Gpg-containing compounds of the invention displayed substantial immunomodulatory properties within an assay measuring IL-2 secretion from immortalized T-cells.
- Table 3a shows the IC 5 o (uM) and maximal inhibition (%) of Gpg compounds in this assay.
- Table 3b shows improved activity (in bold) of tetramer compounds according to Formula I compared to those containing an NH2 terminating group.
- Figure 11 displays a dose-response curve demonstrating the improved immunosuppressive properties as measured by IL-2 secretion of P41-1 (Gpg-containing), a heptamer compound of the invention, compared to the Arg- containing peptide (P40-1), and
- Figure 12 displays a dose-response curve demonstrating the improved immunosuppressive properties as measured by IL-2 secretion of P69 (Gpg-containing), a tetramer compound of the invention, compared to the Arg-containing peptide (P82).
- Figure 13 shows the immunosuppressive properties of P53 (Gpg-containing), a prefe ⁇ ed heptamer compound of the invention, compared to a DMSO control.
- the immunomodulatory properties of the compounds under investigation was investigated by measuring IL-2 secretion from the hybridoma cell line T-Hyb 1 stimulated using DR-transgenic antigen presenting cells (APC) under conditions of half-maximal antigen stimulation.
- IL-2 secretion was detected and measured using a standard E LISA m ethod p rovided b y the OptiEIA m ouse I L-2 kit o f Pharmingen (To ⁇ ey Pine, CA, USA).
- APCs were isolated from the spleen of unimmunized chimeric 0401-IE transgenic mice (Ito et al. 1996) according to standard procedures.
- APCs 1.5xl0 5 APCs were added to 0.2 ml wells of 96-well in RPMI medium containing the following additives (all from Gibco BRL and PAA): 10 % FCS, 2 mM L- glutamine, 1% non-essential amino acids, 1 mM sodium pyruvate and 0.1 g/1 kanamycin. Hen egg ovalbumin was added to a final concentration of 200 ⁇ g/ml in a final volume of 100 ⁇ l of the above medium, the cells incubated with this antigen for 30 min at 37 °C under 6 % CO 2 .
- additives all from Gibco BRL and PAA
- Example 21 Immunomodulatory activity of compounds of the invention within mouse disease models
- mice are treated with compounds at the maximal tolerated dose s.c. for two weeks, and the disease development compared to that in mice treated with solvent only as follows:
- Figure 16 shows the efficacy of prefe ⁇ ed compounds of the invention (P96, P53 and P74) in the CIA mouse model for rheumatoid arthritis compared to solvent as control.
- EAE is induced in DR4 transgenic mice by injection of myelin oligodendrocyte glycoprotein (MOG) as described by Ito et al. (1996). After disease onset, mice are treated with compounds and studied as below:.
- MOG myelin oligodendrocyte glycoprotein
- Figure 17 shows the efficacy of prefe ⁇ ed compounds of the invention (P69, P53 and P74) in the EAE mouse model for multiple sclerosis prevention compared to solvent as control.
- Figure 18 shows the efficacy of prefe ⁇ ed compounds of the invention (P69 and P53) in the EAE mouse model for multiple sclerosis treatment compared to solvent as control.
- Such data for each compund can include the affinity, reactivity, specificity, IC50- values, for inhibition of IL-2 secretion and of T-cell proliferation, as estimated in vitro, and DR-transgenic models of rheumatoid arthritis, and multiple sclerosis.
- the compounds of the invention may be administered for therapeutic or prophylactic use to warm-blooded animals such as humans in the form of conventional pharmaceutical compositions, a typical example of which includes the following: Injectable Solution: 0.01 to 100 mg of active ingredient is dissolved in up to 2 mL of an aqueous injection vehicle to give a concentration of active ingredient between 0.01 to 100 mg/mL.
- the aqueous injection vehicle is buffered to a pH between 5 and 8, as needed, using a pharmaceutically acceptable buffer (for example, phosphate or acetate) and contains a pharmaceutically acceptable tonicity adjustment agent (for example, NaCl or dextrose) added to achieve isotonicity.
- a pharmaceutically acceptable buffer for example, phosphate or acetate
- a pharmaceutically acceptable tonicity adjustment agent for example, NaCl or dextrose
- the vehicle may optionally also contain other pharmaceutically acceptable excipients such as solubilizing agents (for example, DMSO, ethanol, propylene glycol, polyethylene glycol, etc.) preservatives, and antioxidants.
- the active ingredient may typically be a compound described hereinabove and may conveniently be present as a pharmaceutically acceptable salt.
- the compound of the invention may be administered together with one or more other active ingredients. Such compositions may be a single package, pill, or application containing several such active ingredients, or such administration may comprise sequential or repeated administrations of the separate active ingredients that include a compound of the invention.
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BR0308654-2A BR0308654A (en) | 2002-03-22 | 2003-03-24 | Immunosuppressive compounds, methods and related uses |
US10/508,504 US7629318B2 (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
MXPA04009228A MXPA04009228A (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto. |
EP03714400A EP1494701A4 (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
NZ535315A NZ535315A (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
AU2003218401A AU2003218401B2 (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
KR10-2004-7014608A KR20040106291A (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
JP2003579740A JP2005533753A (en) | 2002-03-22 | 2003-03-24 | Immunosuppressive compounds, methods relating thereto and methods of use |
CA002479939A CA2479939A1 (en) | 2002-03-22 | 2003-03-24 | Immunosuppressant compounds, methods and uses related thereto |
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US36712302P | 2002-03-22 | 2002-03-22 | |
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US (1) | US7629318B2 (en) |
EP (1) | EP1494701A4 (en) |
JP (1) | JP2005533753A (en) |
KR (1) | KR20040106291A (en) |
CN (1) | CN1652810A (en) |
AU (1) | AU2003218401B2 (en) |
BR (1) | BR0308654A (en) |
CA (1) | CA2479939A1 (en) |
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PL (1) | PL373738A1 (en) |
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WO2007032778A2 (en) * | 2005-09-13 | 2007-03-22 | Xencor, Inc. | Analysis of mhc-peptide binding interactions via population specific mhc-arrays |
US7439231B2 (en) | 2003-02-14 | 2008-10-21 | Provid Pharmaceuticals, Inc. | Inhibitors of antigen presentation by MHC class II molecules and methods of use thereof |
WO2009073168A1 (en) * | 2007-12-03 | 2009-06-11 | Provid Pharmaceuticals, Inc. | Inhibitors of antigen presentation by mhc class ii molecules and methods of use thereof |
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US20090131329A1 (en) * | 2007-09-14 | 2009-05-21 | Edmund John Miller | Treatment for allograft rejection |
KR101670847B1 (en) * | 2014-04-04 | 2016-11-09 | 주식회사 와이즈오토모티브 | Apparatus and method for peripheral image generation of vehicle |
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MD970253A (en) | 1994-12-22 | 1999-05-31 | Biochem Pharma Inc. | Low-molecular bicyclic thrombin inhibitors |
GB9510264D0 (en) | 1995-05-22 | 1995-07-19 | Iaf Biochem Int | Low molecular weight bicyclic-urea type thrombin inhibitors |
AU733562B2 (en) | 1996-06-18 | 2001-05-17 | Warner-Lambert Company | Process for the preparation of chiral keto-heterocycles of basic amino acids |
WO1997048706A1 (en) | 1996-06-18 | 1997-12-24 | Warner-Lambert Company | Pyrrolo[1,2-a]pyrazine-1,4-dione serine protease inhibitors |
WO1998009987A1 (en) | 1996-09-06 | 1998-03-12 | Biochem Pharma, Inc. | Lactam inhibitors of thrombin |
WO1998028326A1 (en) | 1996-12-23 | 1998-07-02 | Biochem Pharma Inc. | Bicyclic thrombin inhibitors |
AU764277B2 (en) | 1998-05-22 | 2003-08-14 | Abbvie Inc. | Peptide antiangiogenic drugs |
WO2000078796A2 (en) * | 1999-06-24 | 2000-12-28 | Mallinckrodt Inc. | Labeled neurotensin derivatives with improved resistance to enzymatic degradation |
WO2001027141A1 (en) | 1999-10-08 | 2001-04-19 | Corvas International, Inc. | Inhibitors of factor xa having an arginine or arginine aldehyde mimic |
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Cited By (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US7439231B2 (en) | 2003-02-14 | 2008-10-21 | Provid Pharmaceuticals, Inc. | Inhibitors of antigen presentation by MHC class II molecules and methods of use thereof |
US8598312B2 (en) | 2003-02-14 | 2013-12-03 | Provid Pharmaceuticals, Inc. | Inhibitors of antigen presentation by MHC class II molecules |
WO2007032778A2 (en) * | 2005-09-13 | 2007-03-22 | Xencor, Inc. | Analysis of mhc-peptide binding interactions via population specific mhc-arrays |
WO2007032778A3 (en) * | 2005-09-13 | 2007-05-10 | Xencor Inc | Analysis of mhc-peptide binding interactions via population specific mhc-arrays |
WO2009073168A1 (en) * | 2007-12-03 | 2009-06-11 | Provid Pharmaceuticals, Inc. | Inhibitors of antigen presentation by mhc class ii molecules and methods of use thereof |
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BR0308654A (en) | 2005-02-22 |
CA2479939A1 (en) | 2003-10-09 |
WO2003082197A3 (en) | 2004-07-15 |
AU2003218401B2 (en) | 2008-09-04 |
US20060004077A1 (en) | 2006-01-05 |
CN1652810A (en) | 2005-08-10 |
RU2004131200A (en) | 2005-05-27 |
AU2003218401A1 (en) | 2003-10-13 |
US7629318B2 (en) | 2009-12-08 |
EP1494701A2 (en) | 2005-01-12 |
MXPA04009228A (en) | 2005-08-16 |
NZ535315A (en) | 2008-02-29 |
PL373738A1 (en) | 2005-09-05 |
KR20040106291A (en) | 2004-12-17 |
RU2334760C2 (en) | 2008-09-27 |
EP1494701A4 (en) | 2006-09-06 |
JP2005533753A (en) | 2005-11-10 |
ZA200407547B (en) | 2006-06-28 |
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