WO2002008949A3 - Methods and systems for evaluating a matching between measured data and standards - Google Patents

Methods and systems for evaluating a matching between measured data and standards

Info

Publication number
WO2002008949A3
WO2002008949A3 PCT/US2001/023630 US0123630W WO2002008949A3 WO 2002008949 A3 WO2002008949 A3 WO 2002008949A3 US 0123630 W US0123630 W US 0123630W WO 2002008949 A3 WO2002008949 A3 WO 2002008949A3
Authority
WO
Grant status
Application
Patent type
Prior art keywords
measured data
matching
data points
evaluating
standards
Prior art date
Application number
PCT/US2001/023630
Other languages
French (fr)
Other versions
WO2002008949A2 (en )
Inventor
Heinz Breu
Hugh J Pasika
Original Assignee
Applera Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00Investigating or analysing materials by the use of electric, electro-chemical, or magnetic means
    • G01N27/26Investigating or analysing materials by the use of electric, electro-chemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416Systems
    • G01N27/447Systems using electrophoresis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/483Physical analysis of biological material
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10Complex mathematical operations
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10Complex mathematical operations
    • G06F17/15Correlation function computation including computation of convolution operations
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10Complex mathematical operations
    • G06F17/18Complex mathematical operations for evaluating statistical data, e.g. average values, frequency distributions, probability functions, regression analysis
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F19/00Digital computing or data processing equipment or methods, specially adapted for specific applications

Abstract

The present invention proposes an approach to matching measured data points representative of a physical property (for instance the measured peak location or positions of an in-lane size standard which represent DNA fragment length) to a set of standard values of that property (for instance a size standard definition). The matching is evaluated by comparing ratios of intervals between selected pairs of the measured data points with ratios of the intervals between adjacent pairs of the standard values, to find the measured data points that best match the standard values.
PCT/US2001/023630 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards WO2002008949A3 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
US21969700 true 2000-07-21 2000-07-21
US60/219,697 2000-07-21

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
EP20010961761 EP1350179A2 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
CA 2416611 CA2416611A1 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards
JP2002514583A JP2004505254A5 (en) 2001-07-23

Publications (2)

Publication Number Publication Date
WO2002008949A2 true WO2002008949A2 (en) 2002-01-31
WO2002008949A3 true true WO2002008949A3 (en) 2003-07-31

Family

ID=22820389

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/023630 WO2002008949A3 (en) 2000-07-21 2001-07-23 Methods and systems for evaluating a matching between measured data and standards

Country Status (3)

Country Link
EP (1) EP1350179A2 (en)
CA (1) CA2416611A1 (en)
WO (1) WO2002008949A3 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20130090861A1 (en) * 2010-06-29 2013-04-11 Analogic Corporation Internal sizing/lane standard signal verification
GB201511508D0 (en) * 2015-07-01 2015-08-12 Ge Healthcare Bio Sciences Ab Method for determining a size of biomolecules

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993014224A1 (en) * 1992-01-14 1993-07-22 Applied Biosystems, Inc. Size-calibration dna fragment mixture and method
US5876933A (en) * 1994-09-29 1999-03-02 Perlin; Mark W. Method and system for genotyping
WO2000016087A1 (en) * 1998-09-16 2000-03-23 The Perkin-Elmer Corporation Spectral calibration of fluorescent polynucleotide separation apparatus
US6054268A (en) * 1994-06-17 2000-04-25 Perlin; Mark W. Method and system for genotyping
EP1128311A2 (en) * 2000-02-15 2001-08-29 Mark W. Perlin A method and system for DNA analysis

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993014224A1 (en) * 1992-01-14 1993-07-22 Applied Biosystems, Inc. Size-calibration dna fragment mixture and method
US6054268A (en) * 1994-06-17 2000-04-25 Perlin; Mark W. Method and system for genotyping
US5876933A (en) * 1994-09-29 1999-03-02 Perlin; Mark W. Method and system for genotyping
WO2000016087A1 (en) * 1998-09-16 2000-03-23 The Perkin-Elmer Corporation Spectral calibration of fluorescent polynucleotide separation apparatus
EP1128311A2 (en) * 2000-02-15 2001-08-29 Mark W. Perlin A method and system for DNA analysis

Also Published As

Publication number Publication date Type
WO2002008949A2 (en) 2002-01-31 application
EP1350179A2 (en) 2003-10-08 application
CA2416611A1 (en) 2002-01-31 application
JP2004505254A (en) 2004-02-19 application

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