WO2001011083A3 - Methods for detecting mutations using primer extension - Google Patents

Methods for detecting mutations using primer extension Download PDF

Info

Publication number
WO2001011083A3
WO2001011083A3 PCT/US2000/021763 US0021763W WO0111083A3 WO 2001011083 A3 WO2001011083 A3 WO 2001011083A3 US 0021763 W US0021763 W US 0021763W WO 0111083 A3 WO0111083 A3 WO 0111083A3
Authority
WO
WIPO (PCT)
Prior art keywords
methods
primer extension
detecting mutations
deletions
detecting
Prior art date
Application number
PCT/US2000/021763
Other languages
French (fr)
Other versions
WO2001011083A2 (en
Inventor
Anthony P Shuber
William Pierceall
Original Assignee
Exact Lab Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Exact Lab Inc filed Critical Exact Lab Inc
Priority to AU66273/00A priority Critical patent/AU6627300A/en
Priority to CA002381625A priority patent/CA2381625A1/en
Priority to EP00953902A priority patent/EP1203100A2/en
Priority to JP2001515330A priority patent/JP2003521892A/en
Publication of WO2001011083A2 publication Critical patent/WO2001011083A2/en
Publication of WO2001011083A3 publication Critical patent/WO2001011083A3/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Methods for detecting nucleotide deletions in biological samples are described. Methods of the invention are particularly useful for detecting deletions in regions of polynucleotide repeats. In particular, methods of the invention are useful to detect deletions at the BAT26 locus.
PCT/US2000/021763 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension WO2001011083A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
AU66273/00A AU6627300A (en) 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension
CA002381625A CA2381625A1 (en) 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension
EP00953902A EP1203100A2 (en) 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension
JP2001515330A JP2003521892A (en) 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US09/371,991 1999-08-11
US09/371,991 US6280947B1 (en) 1999-08-11 1999-08-11 Methods for detecting nucleotide insertion or deletion using primer extension

Publications (2)

Publication Number Publication Date
WO2001011083A2 WO2001011083A2 (en) 2001-02-15
WO2001011083A3 true WO2001011083A3 (en) 2001-08-30

Family

ID=23466258

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2000/021763 WO2001011083A2 (en) 1999-08-11 2000-08-09 Methods for detecting mutations using primer extension

Country Status (6)

Country Link
US (2) US6280947B1 (en)
EP (1) EP1203100A2 (en)
JP (1) JP2003521892A (en)
AU (1) AU6627300A (en)
CA (1) CA2381625A1 (en)
WO (1) WO2001011083A2 (en)

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7981612B2 (en) 1999-12-07 2011-07-19 Mayo Foundation For Medical Education And Research Methods of screening for supracolonic neoplasms based on stool samples containing a nucleic acid marker indicative of a neoplasm
US9109256B2 (en) 2004-10-27 2015-08-18 Esoterix Genetic Laboratories, Llc Method for monitoring disease progression or recurrence

Families Citing this family (35)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6406857B1 (en) 1997-06-16 2002-06-18 Exact Sciences Corporation Methods for stool sample preparation
US6818404B2 (en) * 1997-10-23 2004-11-16 Exact Sciences Corporation Methods for detecting hypermethylated nucleic acid in heterogeneous biological samples
US6503718B2 (en) 1999-01-10 2003-01-07 Exact Sciences Corporation Methods for detecting mutations using primer extension for detecting disease
WO2000050640A1 (en) 1999-02-25 2000-08-31 Exact Laboratories, Inc. Methods for preserving dna integrity
AU767983B2 (en) * 1999-04-09 2003-11-27 Esoterix Genetic Laboratories, Llc Methods for detecting nucleic acids indicative of cancer
US6586177B1 (en) 1999-09-08 2003-07-01 Exact Sciences Corporation Methods for disease detection
US6849403B1 (en) 1999-09-08 2005-02-01 Exact Sciences Corporation Apparatus and method for drug screening
US6919174B1 (en) 1999-12-07 2005-07-19 Exact Sciences Corporation Methods for disease detection
US20020058265A1 (en) * 2000-09-15 2002-05-16 Promega Corporation Detection of microsatellite instability and its use in diagnosis of tumors
US6844152B1 (en) 2000-09-15 2005-01-18 Promega Corporation Detection of microsatellite instability and its use in diagnosis of tumors
US6911308B2 (en) 2001-01-05 2005-06-28 Exact Sciences Corporation Methods for detecting, grading or monitoring an H. pylori infection
US6428964B1 (en) 2001-03-15 2002-08-06 Exact Sciences Corporation Method for alteration detection
US20030180765A1 (en) * 2002-02-01 2003-09-25 The Johns Hopkins University Digital amplification for detection of mismatch repair deficient tumor cells
WO2003071252A2 (en) 2002-02-15 2003-08-28 Exact Sciences Corporation Methods for analysis of molecular events
US20050244827A1 (en) * 2002-04-04 2005-11-03 Charlotta Olsson Method
US20040091905A1 (en) * 2002-07-01 2004-05-13 Baochuan Guo Method for detecting mutated polynucleotides within a large population of wild-type polynucleotides
US20040185477A1 (en) * 2003-01-10 2004-09-23 Sention Inc. Methods of detecting differences in genomic sequence representation
US20040259101A1 (en) * 2003-06-20 2004-12-23 Shuber Anthony P. Methods for disease screening
WO2005111244A2 (en) * 2004-05-10 2005-11-24 Exact Sciences Corporation Methods for detecting a mutant nucleic acid
US20080124714A1 (en) * 2004-05-14 2008-05-29 Exact Sciences Corporation Method for Stabilizing Biological Samples for Nucleic Acid Analysis
US7981607B2 (en) 2004-08-27 2011-07-19 Esoterix Genetic Laboratories LLC Method for detecting recombinant event
CA2584741A1 (en) * 2004-10-22 2006-05-04 Marijo Kent-First Methods and kits for detecting germ cell genomic instability
WO2006094149A2 (en) * 2005-03-01 2006-09-08 Exact Sciences Corporation Methods and compositions for detecting adenoma
US9777314B2 (en) 2005-04-21 2017-10-03 Esoterix Genetic Laboratories, Llc Analysis of heterogeneous nucleic acid samples
US8772473B2 (en) 2009-03-30 2014-07-08 The Regents Of The University Of California Mostly natural DNA sequencing by synthesis
WO2011119531A1 (en) 2010-03-22 2011-09-29 Esoterix Genetic Laboratories, Llc Mutations associated with cystic fibrosis
GB201107466D0 (en) 2011-05-05 2011-06-15 Loktionov Alexandre Device and method for non-invasive collection of colorectal mucocellular layer and disease detection
WO2015066695A1 (en) 2013-11-04 2015-05-07 Exact Sciences Corporation Multiple-control calibrators for dna quantitation
EP3084004A4 (en) 2013-12-19 2017-08-16 Exact Sciences Corporation Synthetic nucleic acid control molecules
AU2017299597B2 (en) 2016-07-19 2023-08-24 Exact Sciences Corporation Methylated control DNA
WO2018017710A1 (en) 2016-07-19 2018-01-25 Exact Sciences Development Company, Llc Nucleic acid control molecules from non-human organisms
EP3622424A1 (en) 2017-05-12 2020-03-18 Laboratory Corporation of America Holdings Systems and methods for biomarker identificaton
CA3057421C (en) 2017-05-12 2022-10-25 Laboratory Corporation Of America Holdings Compositions and methods to detect non-coeliac gluten sensitivity
WO2019126249A1 (en) 2017-12-20 2019-06-27 Laboratory Corporation Of America Holdings Compositions and methods to detect head and neck cancer
JP2021523365A (en) 2018-05-11 2021-09-02 ラボラトリー コーポレイション オブ アメリカ ホールディングス Compositions and Methods for Detecting Renal Fibrosis

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996030545A1 (en) * 1995-03-24 1996-10-03 Mitokor Mutation detection by differential primer extension of mutant and wildtype target sequences
US5650277A (en) * 1992-07-02 1997-07-22 Diagenetics Ltd. Method of determining the presence and quantifying the number of di- and trinucleotide repeats
US5741650A (en) * 1996-01-30 1998-04-21 Exact Laboratories, Inc. Methods for detecting colon cancer from stool samples
WO2000070096A2 (en) * 1999-01-10 2000-11-23 Exact Laboratories, Inc. Methods of detecting colorectal disease by conduction an assay to detect a mutation in a bat-26 locus

Family Cites Families (110)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4101279A (en) 1977-04-06 1978-07-18 Muhammed Javed Aslam Device for the collection and processing of stool specimens
US4333734A (en) 1980-01-18 1982-06-08 Sloan-Kettering Institute For Cancer Research Diagnostic device for fecal occult blood and method of use
US4535058A (en) 1982-10-01 1985-08-13 Massachusetts Institute Of Technology Characterization of oncogenes and assays based thereon
US4309782A (en) 1980-09-11 1982-01-12 Esteban Paulin Device for collecting fecal specimens
US4445235A (en) 1982-09-13 1984-05-01 Pearl Slover Stool specimen collector
US4883750A (en) 1984-12-13 1989-11-28 Applied Biosystems, Inc. Detection of specific sequences in nucleic acids
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4871838A (en) 1985-07-23 1989-10-03 The Board Of Rijks Universiteit Leiden Probes and methods for detecting activated ras oncogenes
US4705050A (en) 1985-10-02 1987-11-10 Markham Charles W Moisture-activated floatation device
US5348855A (en) 1986-03-05 1994-09-20 Miles Inc. Assay for nucleic acid sequences in an unpurified sample
CA1284931C (en) 1986-03-13 1991-06-18 Henry A. Erlich Process for detecting specific nucleotide variations and genetic polymorphisms present in nucleic acids
US4981783A (en) 1986-04-16 1991-01-01 Montefiore Medical Center Method for detecting pathological conditions
US5635347A (en) 1986-04-30 1997-06-03 Igen, Inc. Rapid assays for amplification products
CA1341576C (en) 1986-08-11 2008-07-08 Thaddeus P. Dryja Diagnosis of retinoblastoma
US4735905A (en) 1986-08-15 1988-04-05 V-Tech, Inc. Specimen-gathering apparatus and method
AU625169B2 (en) 1987-03-23 1992-07-02 Imperial Chemical Industries Plc Molecular markers
US5202231A (en) 1987-04-01 1993-04-13 Drmanac Radoje T Method of sequencing of genomes by hybridization of oligonucleotide probes
US4857300A (en) 1987-07-27 1989-08-15 Cytocorp, Inc. Cytological and histological fixative formulation and methods for using same
IE61148B1 (en) 1988-03-10 1994-10-05 Ici Plc Method of detecting nucleotide sequences
ATE108491T1 (en) 1988-03-18 1994-07-15 Baylor College Medicine MUTATION DETECTION BY COMPETITIVE OLIGONUCLEOTIDE PRIMING.
US5688657A (en) 1988-03-31 1997-11-18 International Bio-Immune Systems, Inc. Monoclonal antibodies against human colon carcinoma-associated antigens and uses therefor
IL89964A0 (en) 1988-04-15 1989-12-15 Montefiore Med Center Method for determining malignant progression,cdna,polypeptides encoded thereby and pharmaceutical compositions containing the same
FR2630000A1 (en) 1988-04-18 1989-10-20 Sultan Bernard BOTTLE FOR COLLECTING AN URINARY BIOLOGICAL SAMPLE FOR CYTOBACTERIOLOGICAL EXAMINATION
US5114839A (en) 1988-05-24 1992-05-19 Gesellschaft Fur Biotechnologische Forsching Mbh Process for dna sequencing using oligonucleotide bank
US5272057A (en) 1988-10-14 1993-12-21 Georgetown University Method of detecting a predisposition to cancer by the use of restriction fragment length polymorphism of the gene for human poly (ADP-ribose) polymerase
CA2044591C (en) 1989-02-13 2002-08-13 James Langham Dale Detection of a nucleic acid sequence or a change therein
US5087617A (en) 1989-02-15 1992-02-11 Board Of Regents, The University Of Texas System Methods and compositions for treatment of cancer using oligonucleotides
US5248671A (en) 1989-02-15 1993-09-28 Board Of Regents, The University Of Texas System Methods and compositions for treatment of cancer using oligonucleotides
US5380645A (en) 1989-03-16 1995-01-10 The Johns Hopkins University Generalized method for assessment of colorectal carcinoma
US5527676A (en) 1989-03-29 1996-06-18 The Johns Hopkins University Detection of loss of the wild-type P53 gene and kits therefor
US5362623A (en) 1991-06-14 1994-11-08 The John Hopkins University Sequence specific DNA binding by p53
DE69032864T3 (en) 1989-03-29 2013-01-31 The Johns Hopkins University Evidence of failure of the wild-type p53 gene
US5196167A (en) 1989-04-04 1993-03-23 Helena Laboratories Corporation Fecal occult blood test product with positive and negative controls
US5589335A (en) 1989-04-05 1996-12-31 Amoco Corporation Hybridization promotion reagents
US5075217A (en) 1989-04-21 1991-12-24 Marshfield Clinic Length polymorphisms in (dC-dA)n ·(dG-dT)n sequences
ES2059895T3 (en) 1989-06-23 1994-11-16 Canon Kk METHOD FOR THE DETECTION OF NUCLEIC ACID.
JP2802125B2 (en) 1989-06-23 1998-09-24 キヤノン株式会社 Nucleic acid detection method
US5302509A (en) 1989-08-14 1994-04-12 Beckman Instruments, Inc. Method for sequencing polynucleotides
US5137806A (en) 1989-12-11 1992-08-11 Board Of Regents, The University Of Texas System Methods and compositions for the detection of sequences in selected DNA molecules
WO1991009964A1 (en) 1990-01-04 1991-07-11 The Johns Hopkins University Gene deleted in colorectal cancer of humans
FR2657861B1 (en) 1990-02-05 1992-06-12 Kodak Pathe DISPENSING PACKAGE FOR STRIP MATERIAL.
IL97222A (en) 1990-02-16 1995-08-31 Orion Yhtymae Oy Method and reagent for determining specific nucleotide variations
US6013431A (en) 1990-02-16 2000-01-11 Molecular Tool, Inc. Method for determining specific nucleotide variations by primer extension in the presence of mixture of labeled nucleotides and terminators
US5126239A (en) 1990-03-14 1992-06-30 E. I. Du Pont De Nemours And Company Process for detecting polymorphisms on the basis of nucleotide differences
JP3179481B2 (en) 1990-06-27 2001-06-25 プリンストン ユニバーシティ Probe for detecting mutant p53
AU8951191A (en) 1990-10-29 1992-05-26 Dekalb Plant Genetics Isolation of biological materials using magnetic particles
US5846710A (en) 1990-11-02 1998-12-08 St. Louis University Method for the detection of genetic diseases and gene sequence variations by single nucleotide primer extension
US5627032A (en) 1990-12-24 1997-05-06 Ulanovsky; Levy Composite primers for nucleic acids
DE69231734T2 (en) 1991-01-16 2001-09-20 Japan Found Cancer HARVESTED AND SOMATIC MUTATIONS OF THE APC GENE IN HUMAN COLORECTAL CANCER
US5352775A (en) 1991-01-16 1994-10-04 The Johns Hopkins Univ. APC gene and nucleic acid probes derived therefrom
IE66125B1 (en) 1991-01-31 1995-12-13 Zeneca Ltd Detection method for variant nucleotides
WO1992014157A1 (en) 1991-02-05 1992-08-20 Kamal Bahar Simple test for detecting carcinoembryonic antigen
WO1992013971A1 (en) 1991-02-05 1992-08-20 Lifecodes Corporation Molecular genetic identification using probes that recognize polymorphic loci
US5888819A (en) 1991-03-05 1999-03-30 Molecular Tool, Inc. Method for determining nucleotide identity through primer extension
US6004744A (en) 1991-03-05 1999-12-21 Molecular Tool, Inc. Method for determining nucleotide identity through extension of immobilized primer
WO1992016657A1 (en) 1991-03-13 1992-10-01 E.I. Du Pont De Nemours And Company Method of identifying a nucleotide present at a defined position in a nucleic acid
US5330892A (en) 1991-03-13 1994-07-19 The Johns Hopkins University MCC gene (mutated in colorectal cancer) used for diagnosis of cancer in humans
US5378602A (en) 1991-05-29 1995-01-03 The Government Of The United States Of America As Represented By The Secretary Of The Department Of Health And Human Services Highly informative microsatellite repeat polymorphic DNA markers twenty-[seven]six
US5468610A (en) 1991-05-29 1995-11-21 The Government Of The United States Of America As Represented By The Secretary Of The Department Of Health And Human Services Three highly informative microsatellite repeat polymorphic DNA markers
US5149506A (en) 1991-08-09 1992-09-22 Sage Products, Inc. Stool collection and transport device
JP3403405B2 (en) 1991-09-13 2003-05-06 サイトセル・リミテッド Nucleic acid extension assay
ATE205542T1 (en) 1992-03-04 2001-09-15 Univ California COMPARATIVE GENOME HYBRIDIZATION
AU3919293A (en) 1992-03-27 1993-11-08 University Of Maryland At Baltimore Detection of gene mutations with mismatch repair enzymes
ES2210239T3 (en) 1992-04-01 2004-07-01 The Johns Hopkins University School Of Medicine METHOD FOR DETECTING NUCLEIC ACIDS OF MAMMALS ISOLATED IN MAKES AND REAGENTS FOR THE SAME.
US5489508A (en) 1992-05-13 1996-02-06 University Of Texas System Board Of Regents Therapy and diagnosis of conditions related to telomere length and/or telomerase activity
DE69333202T2 (en) 1992-06-26 2004-03-18 The Trustees Of Princeton University METHOD FOR DETECTING CANCER CELLS OR THEIR STAGE BY P90 AND P53 ANTIBODIES OR P90 AND P53 PROBE
US5409586A (en) 1992-08-26 1995-04-25 Hitachi, Ltd. Method for analyzing nucleic acid or protein and apparatus therefor
US6214542B1 (en) 1992-10-20 2001-04-10 The United States Of America As Represented By The Department Of Health And Human Services Quantification of indicators of fibrosis
IL103600A0 (en) 1992-10-30 1993-03-15 Yeda Res & Dev Method and kit for cancer diagnosis
US5858679A (en) 1992-11-12 1999-01-12 Fornace, Jr.; Albert J. Method for determining the presence of functional p53 by measuring GADD45 protein expression
US5331973A (en) 1993-03-15 1994-07-26 Fiedler Paul N Method for obtaining stool samples for gastrointestinal cancer testing
US5492808A (en) 1993-05-05 1996-02-20 The Johns Hopkins University Means for detecting familial colon cancer (FCC)
US6153379A (en) 1993-06-22 2000-11-28 Baylor College Of Medicine Parallel primer extension approach to nucleic acid sequence analysis
US5466576A (en) 1993-07-02 1995-11-14 Fred Hutchinson Cancer Research Center Modulation of PIF-1-type helicases
WO1995002068A1 (en) 1993-07-09 1995-01-19 Wakunaga Seiyaku Kabushiki Kaisha Method of discriminating nucleic acid and testing set for discriminating nucleic acid
FR2709761B1 (en) 1993-09-10 1995-11-24 Pasteur Institut Method for detecting molecules containing nucleotide mismatches and for locating these mismatches, and application to the detection of base substitutions or deletions.
US5472842A (en) 1993-10-06 1995-12-05 The Regents Of The University Of California Detection of amplified or deleted chromosomal regions
WO1995009928A1 (en) 1993-10-06 1995-04-13 The Regents Of The University Of California Methods for detecting cancer-associated chromosome deletions using in situ hybridization
US5561041A (en) 1993-11-12 1996-10-01 The Johns Hopkins University School Of Medicine Nucleic acid mutation detection by analysis of sputum
WO1995015400A1 (en) 1993-12-03 1995-06-08 The Johns Hopkins University Genotyping by simultaneous analysis of multiple microsatellite loci
US5610287A (en) 1993-12-06 1997-03-11 Molecular Tool, Inc. Method for immobilizing nucleic acid molecules
US5709998A (en) 1993-12-15 1998-01-20 The Johns Hopkins University Molecular diagnosis of familial adenomatous polyposis
CH686982A5 (en) 1993-12-16 1996-08-15 Maurice Stroun Method for diagnosis of cancers.
WO1995018818A1 (en) 1994-01-03 1995-07-13 Children's Hospital Of Philadelphia Polymorphism at codon 36 of the p53 gene
US6025127A (en) 1994-01-14 2000-02-15 The Johns Hopkins University School Of Medicine Nucleic acid mutation detection in histologic tissue
AU685627B2 (en) 1994-03-18 1998-01-22 Myriad Genetics, Inc. Germline mutations in the MTS gene and method for detecting predisposition to cancer at the MTS gene
SE9500023L (en) 1994-05-17 1995-11-18 Beki Ab Ways to detect cancer
US5496470A (en) 1994-05-27 1996-03-05 Barnes International, Inc. Magnetic separator
US5545527A (en) 1994-07-08 1996-08-13 Visible Genetics Inc. Method for testing for mutations in DNA from a patient sample
US5667987A (en) 1994-07-12 1997-09-16 Bristol-Myers Squibb Company P53 response genes
WO1996006951A1 (en) 1994-08-31 1996-03-07 The Johns Hopkins University School Of Medicine Detection of hypermutable nucleic acid sequence in tissue
GB2293238A (en) 1994-09-13 1996-03-20 Inceltec Ltd Primers for replication and/or amplification reactions
US5702886A (en) 1994-10-05 1997-12-30 The Johns Hopkins University Chromosome I8Q loss and prognosis in colorectal cancer
EP0787203A1 (en) 1994-10-21 1997-08-06 Zeneca Limited Method for characterising variability in telomere dna by pcr
US5629178A (en) 1994-10-28 1997-05-13 Genetics & Ivf Institute Method for enhancing amplification in the polymerase chain reaction employing peptide nucleic acid (PNA)
US5512441A (en) 1994-11-15 1996-04-30 American Health Foundation Quantative method for early detection of mutant alleles and diagnostic kits for carrying out the method
US5463782A (en) 1994-11-21 1995-11-07 Eric V. Carlson Foldable stool sample collection device
US5741677A (en) 1995-06-07 1998-04-21 Geron Corporation Methods for measuring telomere length
US5571676A (en) 1995-06-07 1996-11-05 Ig Laboratories, Inc. Method for mismatch-directed in vitro DNA sequencing
GB9517914D0 (en) 1995-09-02 1995-11-01 Tepnel Medical Ltd Identification of bases in nucleic acid sequences
GB9518156D0 (en) 1995-09-06 1995-11-08 Medical Res Council Method of isolating cells
US5670325A (en) 1996-08-14 1997-09-23 Exact Laboratories, Inc. Method for the detection of clonal populations of transformed cells in a genomically heterogeneous cellular sample
WO1997023651A1 (en) 1995-12-22 1997-07-03 Exact Laboratories, Inc. Methods for the detection of clonal populations of transformed cells in a genomically heterogeneous cellular sample
EP0784096A1 (en) 1996-01-10 1997-07-16 Boehringer Mannheim Gmbh Method of detection of polymorphism and a loss of heterozygosity in a lung tumor suppressor gene
US5928870A (en) * 1997-06-16 1999-07-27 Exact Laboratories, Inc. Methods for the detection of loss of heterozygosity
US5885775A (en) 1996-10-04 1999-03-23 Perseptive Biosystems, Inc. Methods for determining sequences information in polynucleotides using mass spectrometry
CA2282705A1 (en) 1997-02-28 1998-09-03 Exact Laboratories, Inc. Nucleic acid analysis methods
US5830665A (en) 1997-03-03 1998-11-03 Exact Laboratories, Inc. Contiguous genomic sequence scanning
WO1998058081A1 (en) 1997-06-16 1998-12-23 Exact Laboratories, Inc. Methods for stool sample preparation
US5888778A (en) 1997-06-16 1999-03-30 Exact Laboratories, Inc. High-throughput screening method for identification of genetic mutations or disease-causing microorganisms using segmented primers

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5650277A (en) * 1992-07-02 1997-07-22 Diagenetics Ltd. Method of determining the presence and quantifying the number of di- and trinucleotide repeats
WO1996030545A1 (en) * 1995-03-24 1996-10-03 Mitokor Mutation detection by differential primer extension of mutant and wildtype target sequences
US5741650A (en) * 1996-01-30 1998-04-21 Exact Laboratories, Inc. Methods for detecting colon cancer from stool samples
WO2000070096A2 (en) * 1999-01-10 2000-11-23 Exact Laboratories, Inc. Methods of detecting colorectal disease by conduction an assay to detect a mutation in a bat-26 locus

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
ANDREAS BRAUN ET AL: "Improved Analysis of Microsaellites Using Mass spectrometry", GENOMICS, vol. 46, 1997, pages 18 - 23, XP002162453 *
GISMONDI VIVIANA ET AL: "Characterization of 19 novel and six recurring APC mutations in Italian adenomatous polyposis patients, using two different mutation detection techniques.", HUMAN MUTATION, vol. 9, no. 4, 1997, pages 370 - 373, XP002162567, ISSN: 1059-7794 *
HOANG JEAN-MARC ET AL: "BAT-26, an indicator of the replication error phenotype in colorectal cancers and cell lines.", CANCER RESEARCH, vol. 57, no. 2, 1997, pages 300 - 303, XP002162454, ISSN: 0008-5472 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7981612B2 (en) 1999-12-07 2011-07-19 Mayo Foundation For Medical Education And Research Methods of screening for supracolonic neoplasms based on stool samples containing a nucleic acid marker indicative of a neoplasm
US9109256B2 (en) 2004-10-27 2015-08-18 Esoterix Genetic Laboratories, Llc Method for monitoring disease progression or recurrence

Also Published As

Publication number Publication date
US6280947B1 (en) 2001-08-28
US20020045183A1 (en) 2002-04-18
EP1203100A2 (en) 2002-05-08
JP2003521892A (en) 2003-07-22
CA2381625A1 (en) 2001-02-15
AU6627300A (en) 2001-03-05
US6482595B2 (en) 2002-11-19
WO2001011083A2 (en) 2001-02-15

Similar Documents

Publication Publication Date Title
WO2001011083A3 (en) Methods for detecting mutations using primer extension
WO2002038806A3 (en) Detection of nucleic acid polymorphisms
WO2003040395A3 (en) Universal nucleotides for nucleic acid analysis
AU2001245945A1 (en) Detection kits, such as nucleic acid arrays, for detecting the expression of 10,000 or more drosophila genes and uses thereof
WO2003087390A3 (en) Methods for detecting abnormally methylated nucleic acid in heterogeneous biological samples
WO2006113466A3 (en) Methods and nucleic acids for analyses of cellular proliferative disorders
WO2001048237A3 (en) Method for quickly detecting microbial dna/rna, kit therefor and the use of said method
AU2002222614A1 (en) Method of detecting polymorphism in dna by using mass spectroscopy
WO2002018639A3 (en) Detection of cyp2c19 polymorphisms
WO2003094838A3 (en) Simple catalytic dna biosensors for ions based on color changes
AU2002212188A1 (en) Method for determining the degree of methylation of defined cytosines in genomic DNA in the sequence context 5'-CPG-3'
AU2001276843A1 (en) Nucleic acid enzyme biosensor for ions
AU2002311897A1 (en) Nucleic acid detection in pooled samples
AU2001241433A1 (en) Methods for predicting the biological, chemical, and physical properties of molecules from their spectral properties
WO2002061133A3 (en) Nucleic acid detection using structured probes
WO2002022879A3 (en) Detection of microsatellite instability and its use in diagnosis of tumors
AU2002232177A1 (en) Method of detecting nucleotide polymorphism
WO2001077390A3 (en) Process for allele discrimation utilizing primer extension
WO2005001141A3 (en) Methods and nucleic acids for analyses of colorectal cell proliferative disorders
AU2002363259A1 (en) Method for the detection of cytosine methylation in immobilised DNA samples
AU2002218129A1 (en) Method for the detection of cytosine methylations
AU5885100A (en) Method for determining dna double-stranded breaks
WO2003048308A3 (en) Thermus brockianus nucleic acid polymerases
WO2002063049A3 (en) Methods for determining a nucleotide at a specific location within a nucleic acid molecule
AU2002346517A1 (en) Thermus oshimai nucleic acid polymerases

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AU CA JP

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
AK Designated states

Kind code of ref document: A3

Designated state(s): AU CA JP

AL Designated countries for regional patents

Kind code of ref document: A3

Designated state(s): AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE

WWE Wipo information: entry into national phase

Ref document number: 66273/00

Country of ref document: AU

WWE Wipo information: entry into national phase

Ref document number: 2381625

Country of ref document: CA

WWE Wipo information: entry into national phase

Ref document number: 2000953902

Country of ref document: EP

WWP Wipo information: published in national office

Ref document number: 2000953902

Country of ref document: EP

WWR Wipo information: refused in national office

Ref document number: 2000953902

Country of ref document: EP

WWW Wipo information: withdrawn in national office

Ref document number: 2000953902

Country of ref document: EP