WO1991014785A1 - High level expression of basic fibroblast growth factor having a homogeneous n-terminus - Google Patents

High level expression of basic fibroblast growth factor having a homogeneous n-terminus Download PDF

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WO1991014785A1
WO1991014785A1 PCT/US1991/002186 US9102186W WO9114785A1 WO 1991014785 A1 WO1991014785 A1 WO 1991014785A1 US 9102186 W US9102186 W US 9102186W WO 9114785 A1 WO9114785 A1 WO 9114785A1
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dna
growth factor
εequence
bfgf
amino acid
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PCT/US1991/002186
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French (fr)
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Stewart A. Thompson
Judith A. Abraham
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California Biotechnology Inc.
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Priority to AU76774/91A priority Critical patent/AU660394B2/en
Priority to CA002078875A priority patent/CA2078875C/en
Publication of WO1991014785A1 publication Critical patent/WO1991014785A1/en

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    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/475Growth factors; Growth regulators
    • C07K14/50Fibroblast growth factor [FGF]
    • C07K14/503Fibroblast growth factor [FGF] basic FGF [bFGF]
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    • A61P29/00Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
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    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/70Vectors or expression systems specially adapted for E. coli
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Definitions

  • This invention relates to the field of recombinant production of growth factors.
  • the invention relates to the production of human basic fibroblast growth factor having a homogeneous N-terminus.
  • the invention provides means and methods for high level expression and recovery of human basic fibroblast growth factor having a homogeneous N-terminus.
  • Basic fibroblast growth factor is a protein which exhibits potent mitogenic activity on a wide variety of cell types including capillary endothelial cells.
  • the complete amino acid sequence for bFGF derived from bovine pituitary has been determined (Esch, F., et al., Proc Natl Acad Sci (USA) (1985) 82_:6507).
  • Cloned DNA sequences encoding human bFGF have been isolated and the amino acid sequences determined for 131-, 146- and 154-amino acid forms of the human protein (PCT application US86/01879, published as WO 87/01728 on March 26, 1987; Abraham, J.
  • bFGF promotes angiogenesis, i.e. the process of forming new capillary blood vessels. It is, therefore, quite useful as a wound healing agent in applications where it is necessary to form a new capillary bed if the wound is to heal properly.
  • This invention provides methods and means for high level expression of human bFGF having an essentially homogeneous N-terminus.
  • essentially homogeneous is meant that sequence analysis by the Edman degradation method indicates that the bFGF contains greater than 95%, preferably greater that 98%, material having an identical N-terminus.
  • the invention is based on the discovery that deletion of a codon encoding one of the two alanine residues immediately following the N-terminal methionine residue of the 155-amino acid primary translation product of human bFGF results in the expression and recovery of human bFGF protein that is homogeneous at its N-terminus.
  • a method for producing human bFGF having a homogeneous N-terminus which comprises expressing, in a host cell capable of po ⁇ t-translationally removing the N-terminal methionine, • a DNA sequence encoding the amino acid sequence of the 155-amino acid form of human bFGF from which a codon for one of the two alanine residues immediately following the N-terminal methionine has been deleted; and recovering the protein.
  • a vector for high level expression and recovery of human basic FGF having a homogeneous N-terminus comprising, in a host cell capable of po ⁇ t-translationally removing the N-terminal methionine, • a DNA sequence encoding the amino acid sequence of the 155-amino acid form of human bFGF from which a codon for one of the two alanine residues immediately following the N-terminal methionine has been deleted; and recovering the protein.
  • the vector comprises a DNA sequence encoding the 155-amino acid form of human bFGF from which a codon for one of the two alanines immediately following the N-terminal methionine has been deleted, said DNA sequence being operably linked to a control sequence capable of directing its expression in a host cell.
  • a human bFGF composition comprising a homogeneous protein having 153 amino acids of -the human bFGF sequence with the N-terminal sequence Ala-Gly-Ser-.
  • Figure 1A is a representation of an isolated native cDNA sequence encoding human bFGF and the deduced amino acid sequence of the 155-residue primary translation product.
  • Figure IB is a representation of an isolated native cDNA sequence encoding bovine bFGF and the deduced amino acid sequence of the 155-residue primary translation product.
  • Figure 2 is a representation of a DNA sequence encoding human bFGF.
  • This DNA sequence was produced by replacing a portion (upstream from the indicated Hhal site) of the 5' end of the bovine sequence in Figure IB with a synthetic DNA sequence having reduced G + C content compared with the native bovine sequence; deleting a codon for one of the two alanine residues immediately following the N-terminal methionine; changing codons 121 and 137 in Figure IB to ACC and TCC, respectively, and creating a Hindlll restriction endonuclease site 3' to the translation termination codon such that the cDNA sequence (i) encodes human bFGF missing one of the N-terminal alanines, and (ii) is flanked on its 5' and 3' ends with an Ndel site and a Hindlll site, respectively.
  • Figure 3 illustrates a series of synthetic oligodeoxynucleotides (A) that were ligated to form a trp promoter/operator sequence (B) used to control expression of the DNA sequences of the invention.
  • Figure 4 illustrates the construction of pTrp-233, into which a DNA sequence encoding human bFGF was inserted to create pTsFll.
  • Figure 5 is a schematic illustration of the preparation of pTsF-9 ⁇ gal, an expression vector for human bFGF.
  • Figure 6 is a schematic illustration of the preparation of pTsF-9 ⁇ gal-GM-2, an expression vector suitable for insertion of the bFGF(MAGS) coding sequence.
  • Figure 7 is a photograph of a Coomassie blue stained SDS-PAGE gel on which the expression products of E. coli transformed with DNA sequences encoding human bFGF were electrophoresed alongside the expression products of E. coli transformed with DNA sequences of the invention encoding the alanine deletant form of human bFGF.
  • Figures 8A, 8B, 8C and 8D are a series of scanning densitometry plots of the protein in lanes 2 through 5, repectively of the SDS-PAGE gel of Fig. 7.
  • the invention employs a DNA sequence, coding for the 155-amino acid precursor form of human bFGF, from which there has been deleted a codon for one of the two alanine residues immediately following the N-terminal methionine.
  • the encoded modified form of human bFGF is referred to hereafter as "bFGF(MAGS)" to indicate that the primary translation product has the N-terminal sequence Met-Ala-Gly- Ser-.
  • the amino acid sequences of the 155-residue forms of human bFGF and bovine bFGF are shown in Fig. 1A and Fig. IB, respectively.
  • IB are the native coding sequences that were determined as described in PCT publication No. WO 87/01728, the disclosure of which.is incorporated herein by reference. Either of these sequences can be modified by site specific mutagenesis (Zoller, M.J., and Smith, M., Nucleic Acids Res (1982) .10:6487 and Adelman, J.P. et al,, DNA (1983) 2:183) to produce a DNA encoding an analog form of human bFGF lacking one of the alanine residues immediately after the N-terminal methionine.
  • DNA sequences which encode the desired human bFGF sequence missing one of the N-terminal alanine residues.
  • a DNA sequence is provided which encode ⁇ human bFGF mi ⁇ ing an alanine residue, wherein a ⁇ ub ⁇ tantial portion of the DNA encoding the N-terminal portion of the molecule has been modified to reduce its G + C content by comparison with the native DNA sequence.
  • the entire DNA sequence encoding bFGF(MAGS) can be produced synthetically by ligating together a multitude ⁇ of overlapping ⁇ ynthetic oligonucleotides which, when ligated, represent the entire desired DNA ⁇ equence.
  • the individual oligonucleotides can be prepared by either the pho ⁇ photrie ⁇ ter method as described by Edge, et al., Nature (1981) 292:756 and Duckworth, et al., Nucleic Acids Re ⁇ (1981) £:1691 or the phosphora idite method as described by Beaucage, S.L. and Caruthers, M.H., Tet Letts (1981) 2_2_:1859 and Matteucci, M.D.
  • the DNA ⁇ equence encoding bFGF(MAGS) is produced by site specific mutagenesis of a DNA sequence encoding the full 155-amino acid precursor of human bFGF to remove one of the N-terminal alanine codons.
  • Site specific utagene ⁇ i ⁇ can be carried out using the procedures disclosed by Zoller, M.J. and Smith, M., supra and Adelman, J.P., supra.
  • Mutagenesis is carried out on a ⁇ ingle- ⁇ tranded DNA encoding the 155-amino acid form of human bFGF (contained in a derivative of the bacteriophage M13), using a synthetic oligonucleotide primer complementary to the single stranded DNA except for limited mismatching representing the desired mutation, i.e. deletion of one of the codons for alanine immediately following the ATG start (methionine) codon.
  • the size of the oligonucleotide primer is determined by the requirement for stable hybridization of the primer to the region of the gene in which the mutation is to be induced and by the limitations of the currently available methods for synthesizing oligonucleotides.
  • the factor ⁇ to be considered in designing oligonucleotides for use in oligonucleotide-directed mutagenesis e.g., overall size, size of portions flanking the mutation site) are described by Smith, M. and Gillam, S. in Genetic Engineering: Principles and Methods, Plenum Press (1981) 3_:l-32.
  • the overall length of the oligonucleotide will be such as to optimize stable, unique hybridization at the mutation site with the 5 f and 3' extensions from the mutation site being of sufficient size to avoid editing of the mutation by the exonuclease activity of the DNA polymerase.
  • Oligonucleotides used for mutagene ⁇ i ⁇ in accordance with the present invention usually contain from about 18 to about 45 bases, preferably from about 23 to about 27 bases. They will usually contain at least about nine bases 3' of the altered or missing codon.
  • the synthetic nucleotide primer omitting a codon for one of the alanine residues is hybridized to single- stranded phage such as M13, fd, or ⁇ X174 into which a strand of the DNA sequence coding for 155-amino acid bFGF has been cloned.
  • the phage may carry either the sense strand or antisense strand of the gene.
  • the primer is identical to the coding sequence of the region to be mutated except for a deletion of the codon that defines the alanine which is to be deleted.
  • the primer is complementary to the coding sequence of the region to be mutated except for a deletion of the triplet complementary to that which codes for the alanine residue that is to be deleted.
  • Conditions that may be used in the hybridization are described by Smith, M. and Gillam, S., supra. The temperature will usually range between about 0°C and 70°C, more usually about 10°C to 50°C.
  • the primer is extended on the phage DNA by reaction with DNA polymerase I (Klenow fragment), T4 DNA polymerase, or other suitable DNA polymerase.
  • the resulting dsDNA is converted to closed circular dsDNA with DNA ligase such as T4 ligase.
  • DNA molecules containing single-stranded regions may be destroyed by Si endonuclease treatment.
  • the partially double-stranded.preparation can be used directly without treatment with ligase or SI.
  • DNA is transformed into a phage-supporting host bacterium. Cultures of the transformed bacteria are plated in top agar, permitting plaque formation from single cells which harbor the phage. Theoretically, 50% of the new plaques will contain the phage having, as a single ⁇ trand, the mutated form; 50% will have the original sequence.
  • the resulting plaques are washed after being lifted as replicas onto nitrocellulose filters or other ⁇ upport membranes, denatured and then hybridized with kinased synthetic primer. The wash is carried out at a temperature which permits binding of an exact match, but at which, the mismatches with the original strand are sufficient to prevent binding. Plaques which hybridize with the probe are then picked, cultured, and the DNA recovered.
  • alanine deletants of the 155-amino acid form of human bFGF in which additional change ⁇ in amino acid sequence have been effected downstream of the N-terminal. Met-Ala-Gly-Ser-.
  • PCT publication WO89/00198 discloses a number of analogs of bFGF in which • amino acid residue ⁇ of the native bFGF sequence have been substituted with other amino acids in order to effect beneficial changes in .the properties of the molecule.
  • the PCT publication disclose ⁇ analogs in which amino acid residues in a heparin-binding domain, at positions 128 through 138 in the 155-residue primary translation product, are substituted by neutral or negatively charged amino acid residue ⁇ . Also disclosed are analogs in which one or more of the native cysteine residues, preferably those at positions 78 and 96 in the 155-re ⁇ idue primary tran ⁇ lation product, are substituted by neutral amino acid residues. Any of these amino acid substitutions can be combined with the alanine deletion of the present invention. Specifically excluded from the scope of the present invention are the N-terminally shortened versions of bFGF disclosed in PCT WO 89/00198.
  • Non-human mammalian bFGF corresponding to human bFGF(MAGS) can also be provided by the invention. It is known, for example, that the amino acid sequence of the 155-residue precur ⁇ or of bovine bFGF differs from the human precursor protein by two amino acid residue ⁇ i.e.
  • bovine protein has Ser rather than Thr at position 121 and Pro rather than Ser at position 137 (using a numbering system based on the 155-amino acid sequence).
  • a DNA sequence encoding bovine protein corresponding to human bFGF(MAGS) can be prepared by mutagenesi ⁇ of the DNA sequence of Fig. 2 to change the codons corresponding to amino acid residue ⁇ no. 120 and 136. This can be accompli ⁇ hed by a ⁇ ingle nucleotide mutation in each codon.
  • the DNA ⁇ equence encoding bFGF(MAGS) i ⁇ inserted into an appropriate expres ⁇ ion vector in which it is operably linked to a regulatory ⁇ equence which i ⁇ capable of directing expression of the coding ⁇ equence in a ho ⁇ t cell.
  • regulatory sequence refers to a DNA sequence or ⁇ equence ⁇ which are capable, when properly ligated to the coding sequence, of effecting its expres ⁇ ion in a ho ⁇ t compatible with ⁇ uch ⁇ equence ⁇ .
  • Such regulatory sequences include at least promoters in both prokaryotic and eukaryotic hosts, and optionally, operator sequence ⁇ , enhancer ⁇ and transcription termination signals.
  • operably linked refers to a juxtapo ⁇ ition wherein the components are configured so as to perform their usual function.
  • regulatory sequences operably linked to a coding sequence are capable of effecting the expre ⁇ ion of the coding sequence.
  • the expre ⁇ ion vector can al ⁇ o have an origin of replication which i ⁇ functional in the ho ⁇ t cell to be used.
  • the vector al ⁇ o contain ⁇ a phenotypic marker, ⁇ uch as a gene for antibiotic resi ⁇ tance, which allow ⁇ the identification and ⁇ election of ho ⁇ t cells carrying the vector.
  • the expression vector is used to transform a suitable ho ⁇ t cell.
  • Both prokaryotic and eukaryotic hosts can be employed. Prokaryotes most frequently are repre ⁇ ented by variou ⁇ ⁇ train ⁇ of E_ ⁇ coli, however, other microbial strains may be employed. E ⁇ coli has exhibited the ability to po ⁇ t-tran ⁇ lationally proce ⁇ s the N-terminal methionine residue of the 155-residue precursor form of human bFGF.
  • Useful ⁇ train ⁇ of E ⁇ coli include, for example, MC1061, DHl, RR1, C ⁇ OOhfl, K803, HB101, JA221, JM101, JM103 and B, with E_ ; _ coli B being a preferred ho ⁇ t.
  • Pla ⁇ mid vector ⁇ which contain replication sites, ⁇ electable markers and regulatory sequences derived from a specie ⁇ compatible with the host are used; for example, E_ ; _ coli i ⁇ typically transformed using vectors derived from pBR322, a pla ⁇ mid derived by combining part ⁇ of plasmids obtained from two Salmonella species and an E_ ; _ coli strain by Bolivar et al., Gene (1977) 2_:95.
  • pBR322 contains genes for ampicillin and tetracycline resistance and thus provides multiple selectable markers which can be either retained or destroyed in constructing the desired vector.
  • Commonly used prokaryotic regulatory sequences which are defined herein to include promoters for transcription initiation, optionally with an operator, along with ribosome binding site sequences, include such commonly used promoters as the ⁇ -lactamase (penicillinase) and lactose (lac) promoter systems (Chang, et al., Nature (1977) 198:1056) , the tryptophan (trp) promoter system (Goeddel, et al., Nucleic Acid ⁇ Re ⁇ (1980) :4057), the lambda-derived P L promoter (Shimatake, et al., Nature (1981) 292:128) with the N-gene ribo ⁇ ome binding site, and the trp-lac (trc) promoter system (Amann, E., and Brosiu ⁇ ,
  • eukaryotic cells such as yea ⁇ t or Chine ⁇ e ham ⁇ ter ovary (CHO) cells
  • CHO Chine ⁇ e ham ⁇ ter ovary
  • the expression vector containing the coding ⁇ equence for bFGF(MAGS) is used to transform a host cell. Depending on the host cell used, transformation is done using standard techniques appropriate to such cells.
  • the calcium treatment employing calcium chloride, as described by Cohen, S.N., Proc Natl Acad Sci (USA) (1972) 6_9:2110 or the RbCl2 method described in Maniatis, et al., Molecular Cloning: A Laboratory Manual (1982) Cold Spring harbor Pre ⁇ , p. 254 and Hanahan, D., J Mol Biol (1983) 166:557-580 may be used for prokaryote ⁇ or other cells which contain sub ⁇ tantial cell wall barrier ⁇ .
  • Tran ⁇ formant ⁇ carrying the bFGF(MAGS) expre ⁇ ion vector can be identified by known technique ⁇ , depending on the particular phenotypic marker used in the construction of the vector, e.g. by growth in the pre ⁇ ence of an antibiotic .such as ampicillin where an antibiotic re ⁇ i ⁇ tance marker is employed.
  • Various known techniques such as restriction enzyme analysi ⁇ or ⁇ equencing by the dideoxy method, can be employed to verify the correct vector con ⁇ truction.
  • Expre ⁇ sion of bFGF(MAGS) can be effected under condition ⁇ that will depend largely on the particular vector con ⁇ truction and ho ⁇ t cell used and will be readily apparent to those skilled in the art.
  • the transformed ho ⁇ t cells can be used to inoculate a suitable growth medium, and grown to optimal density; expression of bFGF(MAGS) from the controlling promoter can then be induced by the addition of the appropriate inducer, e.g. 3- ⁇ -indoleacrylic acid in the case of the trp promoter.
  • the expressed bFGF(MAGS) can be recovered by known techniques such as those employed in the art for the purification of bFGF from natural sources. In a preferred purification procedure, tran ⁇ formants containing. the expressed protein are lysed mechanically or chemically to release the protein.
  • reaction i ⁇ centrifuged and the ⁇ upernatant i ⁇ loaded onto a heparin-Sepharose column which can be obtained commercially (Pharmacia, Inc.). After wa ⁇ hing the column with a NaCl buffer having a ⁇ alt concentration of about
  • the bFGF(MAGS) can be el ⁇ ted from the column in 2.0 M NaCl.
  • the heparin-Sepharose chromatography step can be repeated or combined with other known protein purification step ⁇ , ⁇ uch a ⁇ ion exchange chromatography on S/P Sephadex or Mono S re ⁇ ins.
  • copper chelate affinity chromatography may be preferable to the heparin-Sepharose chromatography, since it may be undesirable to have even a small amount of heparin in the final formulation.
  • the method of the invention allows one to express bFGF(MAGS) at levels of at least 10% of the total protein expres ⁇ ed by the host.cell.
  • N-terminal amino acid analysi ⁇ indicate ⁇ that expre ⁇ ion of bFGF(MAGS) in E ⁇ coli B results in a final protein product which has an essentially homogeneous N-terminus; that is, greater than 95%, preferably greater that 98% of the bFGF has an identical N-terminus when the protein i ⁇ subjected to N-terminal sequence analysis by Edman degradation. It has been found that prokaryotic hosts such as E_ ⁇ coli are capable of processing off the N-terminal methionine residue encoded by the ATG start codon of bFGF. Accordingly, the method of the invention results in the recovery of bFGF having 153 amino acid residues with the N-terminal sequence Ala-Gly-Ser-.
  • the bFGF(MAGS) provided by the invention has the ⁇ ame utilities as the corre ⁇ ponding bFGF having the N-terminal ⁇ equence Ala-Ala-Gly-Ser-, or a mixed N-terminus.
  • the bFGF(MAGS) is u ⁇ eful in encouraging the healing of wound ⁇ .
  • Purified bFGF(MAGS) is generally applied topically to the traumatized tis ⁇ ue in order to stimulate va ⁇ cularization and healing. Appropriate substrates are burns, dermal ulcers, surgical abrasions such as those of plastic surgery, or other wound situations requiring repair. Because application of bFGF(MAGS) accelerates healing, it also reduces the risk of infection.
  • bFGF(MAGS) is of value in encouraging neova ⁇ cularization
  • mu ⁇ culo-skeletal conditions ⁇ uch a ⁇ bone fracture ⁇ , ligament and tendon repair, tendoniti ⁇ , and bur ⁇ iti ⁇
  • ⁇ kin conditions such as burns, cuts, lacerations, bed ⁇ ore ⁇ , and ⁇ low-healing ulcers such a ⁇ tho ⁇ e ⁇ een in diabetes
  • tis ⁇ ue repair during ischemia and myocardial infarction include mu ⁇ culo-skeletal conditions ⁇ uch a ⁇ bone fracture ⁇ , ligament and tendon repair, tendoniti ⁇ , and bur ⁇ iti ⁇ ; ⁇ kin conditions such as burns, cuts, lacerations, bed ⁇ ore ⁇ , and ⁇ low-healing ulcers such a ⁇ tho ⁇ e ⁇ een in diabetes; and in tis ⁇ ue repair during ischemia and myocardial infarction.
  • Formulation ⁇ of the recombinantly produced bFGF(MAGS) using available excipients and carriers are prepared according to standard methods known to those in the art.
  • the protein can be formulated as lotion ⁇ , a ⁇ gel ⁇ , a ⁇ . part of a controlled relea ⁇ e system, or as ointments with additional active ingredients, ⁇ uch a ⁇ antibiotic ⁇ , if desired.
  • topical administration which i ⁇ the most appropriate with regard to superficial lesions, standard topical formulation ⁇ are employed using, for example, 0.1-100 ⁇ g of bFGF(MAGS) per cm 2 of affected ⁇ urface area.
  • Such ⁇ olution ⁇ would be applied a ⁇ ⁇ eldom a ⁇ ju ⁇ t once to the affected area to a ⁇ often as two times a day over a two to four week period (or po ⁇ ibly longer in ⁇ ome cases of impaired healing situations).
  • concentration of the bFGF(MAGS) and other ingredients in the formulation depends, of course, on the nature and severity of the wound and the nature of the subject.
  • the dose may be lowered with time to lessen likelihood of scarring. For example, the most severe wounds, such as third degree burns, may be treated with a 100 g/cm 2 dose of bFGF(MAGS), but as healing begins, the dose may be progre ⁇ ively dropped to approximately 0.1
  • the concentration of bFGF(MAGS) in the formulation depend ⁇ on a number of factors, including the nature and severity of the .condition and the rate of bFGF(MAGS) relea ⁇ e from the polymer.
  • the formulation ⁇ are con ⁇ tructed so as to achieve a constant local concentration of about 10 times the tis ⁇ ue concentration, as described by'Buckley, et al. (Proc Natl Acad Sci (USA) , supra) .
  • bFGF(MAGS) may act in concert, and even synergistically, with other growth factor ⁇ such a ⁇ epidermal growth factor (EGF), the transforming growth factor ⁇ (TGF- ⁇ or TGF- ⁇ ), in ⁇ ulin-like growth factor ⁇ (IGF-1 and IGF-2), Iamin (a Gly-His-Lys tripeptide) and/or platelet-derived growth factor (PDGF).
  • EGF epidermal growth factor
  • TGF- ⁇ or TGF- ⁇ transforming growth factor ⁇
  • IGF-1 and IGF-2 in ⁇ ulin-like growth factor ⁇
  • Iamin a Gly-His-Lys tripeptide
  • PDGF platelet-derived growth factor
  • ⁇ pecifically for bone repair it may act in ⁇ ynergy with antagoni ⁇ t ⁇ of parathyroid hormone, ⁇ ince parathyroid hormone promote ⁇ bone resorption.
  • compositions and administration protocols of the invention are embodiments wherein the bFGF(MAGS) of the invention is administered in the same composition with, or in the same protocol with, one or more of the foregoing factors, thu ⁇ more effectively to achieve the de ⁇ ired ti ⁇ ue repair.
  • bFGF(MAGS) i ⁇ effective in promoting neurite ⁇ outgrowth, nerve regeneration, and neuronal survival, it may be useful for treatment of certain neurological disorders ⁇ uch as Alzheimer's and Parkinson' ⁇ di ⁇ ea ⁇ e ⁇ , amyotrophic lateral ⁇ clero ⁇ i ⁇ , and general aging of the nervous system, as well as traumatic injury to the spinal cord and peripheral nerves.
  • the drug may also be delivered by means of implants of cell cultures as in transplant therapy by treating the cultures prior to transplantation, with the bFGF(MAGS) preparation ⁇ of the invention or by engineering the cell ⁇ by recombinant DNA technology to produce bFGF(MAGS).
  • the bFGF(MAGS) may be injected directly to the spinal fluid, or may be applied ⁇ y ⁇ temically.
  • Sy ⁇ temic formulations are generally as known in the art and include formulation in buffer or physiological saline, or other appropriate excipient.
  • Dosage levels for systemic formulations are sufficient to deliver to the site of action a local concentration similar to that employed in the topical formulations described above.
  • tissue culture or explant maintenance it may be supplied at 0.1-10 ng/ml of serum or culture medium.
  • bFGF(MAGS) is particularly useful in aiding the reformation and repair of tis ⁇ ue ⁇ traumatized during ⁇ urgery.
  • thi ⁇ u ⁇ e it may be helpful to embed the bFGF(MAGS) in polymer ⁇ u ⁇ ed a ⁇ ⁇ urgical staple ⁇ .
  • the protein ⁇ are thu ⁇ able to ⁇ uppleraent biologically the mechanical ⁇ uturing effected by the ⁇ taple ⁇ , and to augment and abet the "natural" healing proce ⁇ e ⁇ in the repairing tissues.
  • angiogenic stimuli such as those provided by the bFGF(MAGS) discu ⁇ ed herein, result in the relea ⁇ e of ti ⁇ ue pla ⁇ minogen activator (tPA) and of collagena ⁇ e :in vitro from endothelial cell ⁇ (Gro ⁇ , J.L., et al., Proc Natl Acad Sci (USA) (1983) £0:2623).
  • the bFGF(MAGS) of the invention i ⁇ al ⁇ o useful in treatment of condition ⁇ which re ⁇ pond to the ⁇ e enzyme ⁇ . While it may be nece ⁇ sary in acute situations (such as the presence of a blood clot as ⁇ ociated with stroke or heart attack) directly to administer large doses of tPA to dissolve the clot, for treatment of chronic propensity to form embolisms, administration of bFGF(MAGS) to maintain a suitable level of tPA in the blood stream may be desirable. Therefore, for this indication, ⁇ y ⁇ temic administration of the drug, using conventional mean ⁇ ⁇ uch a ⁇ intramuscular or intravenous injection, is preferred.
  • bacteriophage harboring human and bovine bFGF ⁇ equence ⁇ are depo ⁇ ited at the American Type Culture Collection. Thu ⁇ , the bFGF DNA ⁇ equence u ⁇ ed as the ⁇ tarting material in the following examples i ⁇ available from a variety of sources.
  • oligodeoxynucleotides ⁇ hown in Fig. 3A were synthesized by the phosphotrie ⁇ ter method and purified. 500 pmole of each oligodeoxynucleotide except 1 and 10 were phosphorylated individually in 20 ⁇ l containing 60 mM Tri ⁇ -HCl, pH 8, 15 mM DTT, 10 mM MgCl2, 20 Ci of [ ⁇ 32p]-ATP and 20 units of polynucleotide kinase (P/L Biochemicals) for 30 min. at 37°C.
  • P/L Biochemicals polynucleotide kinase
  • the ligation mixture wa ⁇ extracted with phenol/chloroform and the DNA ethanol precipitated.
  • the dried DNA wa ⁇ recon ⁇ tituted in 30 ⁇ l and dige ⁇ ted with EcoRl and Pstl for 1 hour at 37°C.
  • the mixture was extracted with phenol/chloroform and ethanol precipitated followed by separation of the various double ⁇ tranded DNA . ⁇ egments by electrophore ⁇ i ⁇ on an 8% polyacrylamide gel, according to the method of Laemmli, Nature (1970) 227:680.
  • the DNA fragment ⁇ were vi ⁇ ualized by wet gel autoradiography and a band corre ⁇ ponding to approximately 100 bp in length wa ⁇ cut out and eluted overnight.
  • the de ⁇ igned ⁇ equence in Ml3-trp contain ⁇ the promoter (-35 and -10 region ⁇ ) and operator region ⁇ of the tryptophan (trp) operon a ⁇ well a ⁇ the ribosome binding region of the trp operon leader peptide (Fig. 3B).
  • Analogou ⁇ sequences to that shown in Fig. 3B have been proven to be useful in the expres ⁇ ion of heterologous proteins in E. coli (Hallewell, R.A., and Emtage, S., Gene (1980) :27, Ikehara, M. , et al., Proc Natl Acad Sci (USA) (1984) 81:5956).
  • Plasmid pKK233-2 (Fig. 4A; A ann, E. and Bro ⁇ iu ⁇ , J., supra) was digested to completion with Ndel followed by 5 the filling in of the termini by the method of Maniati ⁇ , et al. , Molecular Cloning, Cold Spring Harbor Laboratories (1982) at p. 394, with 5 unit ⁇ of E ⁇ coli DNA Polymera ⁇ e I, Klenow fragment (Boehringer-Mannheim, Inc.) and the addition of dATP, dCTP, dGTP and TTP to 50 M. This was incubated at p. 4A; A ann, E. and Bro ⁇ iu ⁇ , J., supra) was digested to completion with Ndel followed by 5 the filling in of the termini by the method of Maniati ⁇ , et al. , Molecular Cloning, Cold Spring Harbor Laboratories (1982) at p. 394, with 5 unit ⁇ of E ⁇ coli DNA Polymera ⁇ e
  • bovine basic FGF bovine basic FGF
  • human basic FGF bovine basic FGF
  • the XBB2 clone ATCC No.
  • the re ⁇ ultant mutated DNA wa ⁇ ⁇ equenced by dideoxynucleotide ⁇ equence analy ⁇ i ⁇ (Sanger et al., ⁇ upra) to confirm that the de ⁇ ired mutagene ⁇ is had occurred.
  • the approximately 640 bp fragment spanning the FGF coding region was exci ⁇ ed with Hindlll from the replicative form of the mutated M13 phage DNA and ligated into Hindlll-dige ⁇ ted pUCl3 (Me ⁇ i.ng, J., Method ⁇ Enzymol (1983) 101:20) to obtain the intermediate pla ⁇ mid pJJl5-l.
  • the replicative form of the Ml3mp9 phage carrying the synthetic fragment was digested with Hindlll and the 135 bp fragment was isolated. This fragment was ligated into Hindlll-cut pUC9. The resulting plasmid was then digested with Ndel and Hhal and the 126 bp subfragment of the ⁇ ynthetic in ⁇ ert wa ⁇ i ⁇ olated.
  • a high-copy number expre ⁇ ion vector for expres ⁇ ing bFGF under the control of the trp promoter/operator wa ⁇ prepared according to the following procedure, which i ⁇ illustrated in Fig. 5.
  • the plasmid pUC9 (Fig..5D; Vieira, J. and Mes ⁇ ing, J., Gene (1982) lj ⁇ :259), containing an origin of replication (ori) functional in E___ coli , an ampicillin resistance gene, a lac promoter/operator and a polylinker region, wa ⁇ digested with Pvul (New England Biolabs) and EcoRI (New England Biolab ⁇ ) for 3.25 hours according to the manufacturer's instruction ⁇ .
  • pT ⁇ Fll DNA (Fig. 5B) wa ⁇ incubated as above with Pvul and EcoRI.
  • the pUC9 and pT ⁇ Fll fragments generated by dige ⁇ tion with the two re ⁇ triction enzymes were ligated in the presence of T4 DNA ligase.
  • the ligation reaction was transformed into E_ ; _ coli B.
  • This - plasmid was designated pTsF-9.
  • Pla ⁇ mid DNA from ⁇ ingle colony transformants was analyzed by plasmid size and restriction analy ⁇ i ⁇ to i ⁇ olate the pla ⁇ mid identified a ⁇ pT ⁇ F-9 ⁇ gal in Fig. 5F. Blunt end ligation of the filled-in EcoRI site and the PvuII ⁇ ite re ⁇ ult ⁇ in re ⁇ toration of the EcoRI site in pT ⁇ F-9 ⁇ gal.
  • the plasmid pTsF-9 ⁇ gal contains the bFGF coding ⁇ equence under the control of the trp promoter/operator, a ⁇ well a ⁇ an ampicillin re ⁇ i ⁇ tance gene and an origin of replication functional in E ⁇ _ coli.
  • Pla ⁇ mid FGFt7910 was constructed by ligating the -590 bp EcoRI-Hindlll DNA fragment of pTsFll (comprising the trp promoter/operator region and the DNA encoding.the 155- residue precursor form of human bFGF) into the EcoRI-Hindlll sites of M13mp9.
  • Met Ala Ala Gly Ser lie..-.
  • pTrp-9 a plasmid containing the trp promoter/operator and polylinker region from pTrp-233 and the origin of replication, lac promoter/operator and polylinker from pUC9 (Fig. 6C).
  • pTrp-9 was digested with EcoRI and PvuII and the EcoRI ends were filled in u ⁇ ing DNA Polymera ⁇ e I, Klenow fragment and deoxynucleoside triphosphate ⁇ , a ⁇ de ⁇ cribed above. The DNA was recircularized by blunt end ligation. in the pre ⁇ ence of T4 DNA liga ⁇ e.
  • the ligation reaction wa ⁇ u ⁇ ed to tran ⁇ form E_ ; _ coli B to ampicillin re ⁇ i ⁇ tance.
  • the EcoRI-Hindlll fragment containing the bFGF(MAGS) coding sequence and trp promoter/operator (Example 4) wa ⁇ then ligated to the i ⁇ olated fragment of pT ⁇ F-9 ⁇ gal-GM-2 in the presence of T4 DNA liga ⁇ e.
  • the resultant plasmid designated pTsF-9 ⁇ gal(MAGS) , i ⁇ identical to pTsF-9 ⁇ gal except for the sub ⁇ titution of the bFGF(MAGS) coding ⁇ equence for the bFGF coding ⁇ equence.
  • Example 6 Expre ⁇ ion of bFGF and bFGF(MAGS)
  • the plasmids pTsF-9 ⁇ gal and pT ⁇ F-9 ⁇ gal(MAGS) were separately transformed into E_ ⁇ coli B cells. Single colonies were u ⁇ ed to inoculate cultures in L+amp medium, which were then grown for 5 hour ⁇ at 30°C. The ⁇ e cultures were u ⁇ ed in turn to seed expres ⁇ ion culture ⁇ (1 to 100 dilution into M9 ⁇ alt ⁇ containing 0.5% ca ⁇ amino acid ⁇ , 0.4% glucose, 2 /g/ml thiamine, 0.1 mM CaCl2 r 0.8 mM MgS ⁇ , and 50 g/ml ampicillin).
  • trp promoter wa ⁇ induced with the addition of 50 / /g/ml 3- ⁇ -indoleacrylic acid, and the culture ⁇ were grown overnight at 30°C. After 14 to 18 hour ⁇ the A550 wa ⁇ determined and one absorbance unit of cell pellet was resuspended in 100 ⁇ l of SDS-containing polyacrylamide gel loading buffer and boiled. 10 ⁇ l of the re ⁇ ulting ⁇ upernatant wa ⁇ loaded onto a 15% acryla ide-SDS gel and electrophore ⁇ ed. The gel wa ⁇ ⁇ tained with Cooma ⁇ ie blue.
  • Fig. 7 is a photograph of a stained gel with molecular weight marker ⁇ in lane 1.
  • Lane ⁇ 2 and 3 were loaded with protein extracted from two culture ⁇ of pTsF- 9 ⁇ gal tran ⁇ formant ⁇ .
  • Lane ⁇ 4 and 5 were loaded with protein extracted from two culture ⁇ of pT ⁇ F-9 ⁇ gal(MAGS) tran ⁇ f.ormant ⁇ .
  • Lane 6 contain ⁇ a bFGF ⁇ tandard.
  • the band ⁇ corre ⁇ ponding to bFGF(MAGS) in lane ⁇ 4 and 5 are vi ⁇ ibly darker than the band ⁇ corre ⁇ ponding to bFGF in lanes 2 and 3.
  • Figs. 8A-8D show the densitometry plots for each of the lanes 2-5 respectively.
  • the peaks representing bFGF or bFGF(MAGS) are labeled by arrows.
  • the amount of bFGF or bFGF(MAGS) expres ⁇ ed relative to the total cell protein wa ⁇ calculated for each of the culture ⁇ , ba ⁇ ed on the area under the curve in the den ⁇ itometer plot.
  • E. coli B cells tran ⁇ formed with pT ⁇ F-9 ⁇ gal(MAGS) were grown in two liter ⁇ of M9 media containing ca ⁇ amino acid ⁇ and 50 /g/ml ampicillin.
  • the culture wa ⁇ grown to an optical den ⁇ ity -of 0.58 (monitored at 550 nm) and induced with 50 /g/ml 3- ⁇ -indoleacrylic acid, after which it was incubated with ⁇ haking overnight at 30°C.
  • the supernatant wa ⁇ applied to a column of SP- Sephadex (2.5 cm x 2 cm) equilibrated with 20 mM ⁇ odium pho ⁇ phate pH 7, 5 mM EDTA.
  • the column wa ⁇ washed with the same buffer until the absorbance at 280 nm returned to baseline levels.
  • the protein was eluted from the column with 20 mM sodium phosphate pH 7, 5 mM EDTA, 500 mM NaCl.

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Abstract

DNA sequences are provided which encode a form of basic fibroblast growth factor lacking one of the alanine residues immediately following the N-terminal methionine residue of the primary translation product. The DNA sequences can be expressed to produce basic fibroblast growth factor having a homogeneous N-terminus.

Description

HIGH LEVEL EXPRESSION OF' BASIC FIBROBLAST GROWTH FACTOR HAVING A HOMOGENEOUS N-TERMINUS
Field of the Invention This invention relates to the field of recombinant production of growth factors. In particular, the invention relates to the production of human basic fibroblast growth factor having a homogeneous N-terminus. The invention provides means and methods for high level expression and recovery of human basic fibroblast growth factor having a homogeneous N-terminus.
Background of the Invention
Basic fibroblast growth factor (bFGF) is a protein which exhibits potent mitogenic activity on a wide variety of cell types including capillary endothelial cells. The complete amino acid sequence for bFGF derived from bovine pituitary has been determined (Esch, F., et al., Proc Natl Acad Sci (USA) (1985) 82_:6507). Cloned DNA sequences encoding human bFGF have been isolated and the amino acid sequences determined for 131-, 146- and 154-amino acid forms of the human protein (PCT application US86/01879, published as WO 87/01728 on March 26, 1987; Abraham, J. et al., Science (1986) 233:545; Abraham, J. et al., The EMBO Journal (1986) 5_:2523). Analysis of the cloned DNA sequences also demonstrated that a potential initiating methionine codon lies immediately upstream of the coding sequence for the 154-amino acid form of bFGF indicating that (i) the primary translation product from this gene is 155 residues in length, and (ii) the 154-amino acid form is derived by'post- translational removal of the initiating methionine. Subsequently, Florkiewicz, R. and Sommer, A. (Proc Natl Acad Sci (USA) (1989) £6:3978-3981) and Prats, H., et al. (Proc Natl Acad Sci (USA) (1989) 86_:1836-1840) reported the existence of longer forms of bFGF which may be produced as the result of alternative translation initiation at leucine codons lying upstream of the methionine initiation codon for the 155-reεidue primary translation product.
Due in part to its potent mitogenic activity on capillary endothelial cells, bFGF promotes angiogenesis, i.e. the process of forming new capillary blood vessels. It is, therefore, quite useful as a wound healing agent in applications where it is necessary to form a new capillary bed if the wound is to heal properly.
The availability of isolated, cloned DNA sequences encoding human bFGF has made it possible, using the techniques of recombinant DNA technology, to express the protein in host cells transformed with expression vectors containing these sequences and to recover the protein for clinical use. It has been observed that expression of the 155-residue primary translation product of human bFGF and the bovine equivalent in both prokaryotic and eukaryotic hosts capable of processing off the N-terminal methionine results in the production of protein having a icroheterogeneous N-terminus (see, e.g., Barr, Philip J. et al., J Biol Chem (1988) 26_3 (31):16471). We have consistently observed that expression of the 155-residue primary translation product of human bFGF in E_^ coli results in the recovery of protein having a mixed N-terminal sequence Ala-Ala-Gly-Ser-Ile-/Ala-Gly-Ser-Ile- in approximately a 70/30 ratio. Although this microheterogeneity does not appear to affect the bioactivity of the molecule, it is generally considered desirable for clinical use to obtain a homogeneous material, i.e. a protein having essentially the same N-terminal sequence from molecule to molecule. Summary of the Invention
This invention provides methods and means for high level expression of human bFGF having an essentially homogeneous N-terminus. By "essentially homogeneous" is meant that sequence analysis by the Edman degradation method indicates that the bFGF contains greater than 95%, preferably greater that 98%, material having an identical N-terminus. The invention is based on the discovery that deletion of a codon encoding one of the two alanine residues immediately following the N-terminal methionine residue of the 155-amino acid primary translation product of human bFGF results in the expression and recovery of human bFGF protein that is homogeneous at its N-terminus. Particularly, following post-translational processing of the N-terminal methionine, there is produced human bFGF of 153 amino acids in length having the uniform N-terminal sequence Ala-Gly- Ser-. Furthermore, using the E^ coli expression vectors in Examples 3 and 5 below, it has been discovered that expression of the Ala-deletant sequence results in expression levels on the order of 50% to 100% higher than expression of the corresponding protein sequence which does not have the Ala deletion.
Accordingly, there is provided by the present invention a method for producing human bFGF having a homogeneous N-terminus which comprises expressing, in a host cell capable of poεt-translationally removing the N-terminal methionine, a DNA sequence encoding the amino acid sequence of the 155-amino acid form of human bFGF from which a codon for one of the two alanine residues immediately following the N-terminal methionine has been deleted; and recovering the protein. There is also provided a vector for high level expression and recovery of human basic FGF having a homogeneous N-terminus. The vector comprises a DNA sequence encoding the 155-amino acid form of human bFGF from which a codon for one of the two alanines immediately following the N-terminal methionine has been deleted, said DNA sequence being operably linked to a control sequence capable of directing its expression in a host cell. Also provided is a human bFGF composition comprising a homogeneous protein having 153 amino acids of -the human bFGF sequence with the N-terminal sequence Ala-Gly-Ser-.
Brief Description of the Drawings
Figure 1A is a representation of an isolated native cDNA sequence encoding human bFGF and the deduced amino acid sequence of the 155-residue primary translation product. Figure IB is a representation of an isolated native cDNA sequence encoding bovine bFGF and the deduced amino acid sequence of the 155-residue primary translation product. Figure 2 is a representation of a DNA sequence encoding human bFGF. This DNA sequence was produced by replacing a portion (upstream from the indicated Hhal site) of the 5' end of the bovine sequence in Figure IB with a synthetic DNA sequence having reduced G + C content compared with the native bovine sequence; deleting a codon for one of the two alanine residues immediately following the N-terminal methionine; changing codons 121 and 137 in Figure IB to ACC and TCC, respectively, and creating a Hindlll restriction endonuclease site 3' to the translation termination codon such that the cDNA sequence (i) encodes human bFGF missing one of the N-terminal alanines, and (ii) is flanked on its 5' and 3' ends with an Ndel site and a Hindlll site, respectively.
Figure 3 illustrates a series of synthetic oligodeoxynucleotides (A) that were ligated to form a trp promoter/operator sequence (B) used to control expression of the DNA sequences of the invention.
Figure 4 illustrates the construction of pTrp-233, into which a DNA sequence encoding human bFGF was inserted to create pTsFll.
Figure 5 is a schematic illustration of the preparation of pTsF-9Δβgal, an expression vector for human bFGF. Figure 6 is a schematic illustration of the preparation of pTsF-9Δβgal-GM-2, an expression vector suitable for insertion of the bFGF(MAGS) coding sequence. Figure 7 is a photograph of a Coomassie blue stained SDS-PAGE gel on which the expression products of E. coli transformed with DNA sequences encoding human bFGF were electrophoresed alongside the expression products of E. coli transformed with DNA sequences of the invention encoding the alanine deletant form of human bFGF. Figures 8A, 8B, 8C and 8D are a series of scanning densitometry plots of the protein in lanes 2 through 5, repectively of the SDS-PAGE gel of Fig. 7.
Detailed Description of the Invention The invention employs a DNA sequence, coding for the 155-amino acid precursor form of human bFGF, from which there has been deleted a codon for one of the two alanine residues immediately following the N-terminal methionine. The encoded modified form of human bFGF is referred to hereafter as "bFGF(MAGS)" to indicate that the primary translation product has the N-terminal sequence Met-Ala-Gly- Ser-. The amino acid sequences of the 155-residue forms of human bFGF and bovine bFGF are shown in Fig. 1A and Fig. IB, respectively. The DNA sequences shown in Fig. 1A and Fig. IB are the native coding sequences that were determined as described in PCT publication No. WO 87/01728, the disclosure of which.is incorporated herein by reference. Either of these sequences can be modified by site specific mutagenesis (Zoller, M.J., and Smith, M., Nucleic Acids Res (1982) .10:6487 and Adelman, J.P. et al,, DNA (1983) 2:183) to produce a DNA encoding an analog form of human bFGF lacking one of the alanine residues immediately after the N-terminal methionine. Due to the well-known degeneracy of the DNA code, it will be understood that other DNA sequences can be employed provided they encode the desired human bFGF sequence missing one of the N-terminal alanine residues. In a preferred embodiment, a DNA sequence is provided which encodeε human bFGF miεεing an alanine residue, wherein a εubεtantial portion of the DNA encoding the N-terminal portion of the molecule has been modified to reduce its G + C content by comparison with the native DNA sequence. If desired, the entire DNA sequence encoding bFGF(MAGS) can be produced synthetically by ligating together a serieε of overlapping εynthetic oligonucleotides which, when ligated, represent the entire desired DNA εequence. The individual oligonucleotides can be prepared by either the phoεphotrieεter method as described by Edge, et al., Nature (1981) 292:756 and Duckworth, et al., Nucleic Acids Reε (1981) £:1691 or the phosphora idite method as described by Beaucage, S.L. and Caruthers, M.H., Tet Letts (1981) 2_2_:1859 and Matteucci, M.D. and Caruthers, M.H. , J Am Chem Soc (1981) 103:3185 and can be prepared using commercially available automated oligonucleotide εyntheεizerε. Thiε approach has been used successfully to synthesize entire geneε of conεiderable length.
Preferably, the DNA εequence encoding bFGF(MAGS) is produced by site specific mutagenesis of a DNA sequence encoding the full 155-amino acid precursor of human bFGF to remove one of the N-terminal alanine codons. Site specific utageneεiε can be carried out using the procedures disclosed by Zoller, M.J. and Smith, M., supra and Adelman, J.P., supra. Mutagenesis is carried out on a εingle- εtranded DNA encoding the 155-amino acid form of human bFGF (contained in a derivative of the bacteriophage M13), using a synthetic oligonucleotide primer complementary to the single stranded DNA except for limited mismatching representing the desired mutation, i.e. deletion of one of the codons for alanine immediately following the ATG start (methionine) codon.
The size of the oligonucleotide primer is determined by the requirement for stable hybridization of the primer to the region of the gene in which the mutation is to be induced and by the limitations of the currently available methods for synthesizing oligonucleotides. The factorε to be considered in designing oligonucleotides for use in oligonucleotide-directed mutagenesis (e.g., overall size, size of portions flanking the mutation site) are described by Smith, M. and Gillam, S. in Genetic Engineering: Principles and Methods, Plenum Press (1981) 3_:l-32. In general, the overall length of the oligonucleotide will be such as to optimize stable, unique hybridization at the mutation site with the 5f and 3' extensions from the mutation site being of sufficient size to avoid editing of the mutation by the exonuclease activity of the DNA polymerase. Oligonucleotides used for mutageneεiε in accordance with the present invention usually contain from about 18 to about 45 bases, preferably from about 23 to about 27 bases. They will usually contain at least about nine bases 3' of the altered or missing codon. The synthetic nucleotide primer omitting a codon for one of the alanine residues is hybridized to single- stranded phage such as M13, fd, or ΦX174 into which a strand of the DNA sequence coding for 155-amino acid bFGF has been cloned. It will be appreciated that the phage may carry either the sense strand or antisense strand of the gene. When the phage carries the antisense strand the primer is identical to the coding sequence of the region to be mutated except for a deletion of the codon that defines the alanine which is to be deleted. When the phage carries the sense strand the primer is complementary to the coding sequence of the region to be mutated except for a deletion of the triplet complementary to that which codes for the alanine residue that is to be deleted. Conditions that may be used in the hybridization are described by Smith, M. and Gillam, S., supra. The temperature will usually range between about 0°C and 70°C, more usually about 10°C to 50°C. After hybridization, the primer is extended on the phage DNA by reaction with DNA polymerase I (Klenow fragment), T4 DNA polymerase, or other suitable DNA polymerase. The resulting dsDNA is converted to closed circular dsDNA with DNA ligase such as T4 ligase. DNA molecules containing single-stranded regions may be destroyed by Si endonuclease treatment. Alternatively, the partially double-stranded.preparation can be used directly without treatment with ligase or SI. The resulting fully or partially double-stranded
DNA is transformed into a phage-supporting host bacterium. Cultures of the transformed bacteria are plated in top agar, permitting plaque formation from single cells which harbor the phage. Theoretically, 50% of the new plaques will contain the phage having, as a single εtrand, the mutated form; 50% will have the original sequence. The resulting plaques are washed after being lifted as replicas onto nitrocellulose filters or other εupport membranes, denatured and then hybridized with kinased synthetic primer. The wash is carried out at a temperature which permits binding of an exact match, but at which, the mismatches with the original strand are sufficient to prevent binding. Plaques which hybridize with the probe are then picked, cultured, and the DNA recovered.
Also included within the scope of the present invention is the production of alanine deletants of the 155-amino acid form of human bFGF in which additional changeε in amino acid sequence have been effected downstream of the N-terminal. Met-Ala-Gly-Ser-. PCT publication WO89/00198, the discloεure of which is incorporated by reference, discloses a number of analogs of bFGF in which amino acid residueε of the native bFGF sequence have been substituted with other amino acids in order to effect beneficial changes in .the properties of the molecule. In particular, the PCT publication discloseε analogs in which amino acid residues in a heparin-binding domain, at positions 128 through 138 in the 155-residue primary translation product, are substituted by neutral or negatively charged amino acid residueε. Also disclosed are analogs in which one or more of the native cysteine residues, preferably those at positions 78 and 96 in the 155-reεidue primary tranεlation product, are substituted by neutral amino acid residues. Any of these amino acid substitutions can be combined with the alanine deletion of the present invention. Specifically excluded from the scope of the present invention are the N-terminally shortened versions of bFGF disclosed in PCT WO 89/00198. The amino acid modifications downstream of the Met-Ala-Gly-Ser- N-terminal sequence can be effected by site specific mutagenesiε of the encoding DNA aε diεclosed in PCT WO 89/0198, which mutation(s) can be carried out either before or after the mutation deleting the alanine codon. Non-human mammalian bFGF corresponding to human bFGF(MAGS) can also be provided by the invention. It is known, for example, that the amino acid sequence of the 155-residue precurεor of bovine bFGF differs from the human precursor protein by two amino acid residueε i.e. the bovine protein has Ser rather than Thr at position 121 and Pro rather than Ser at position 137 (using a numbering system based on the 155-amino acid sequence). Thus, a DNA sequence encoding bovine protein corresponding to human bFGF(MAGS) can be prepared by mutagenesiε of the DNA sequence of Fig. 2 to change the codons corresponding to amino acid residueε no. 120 and 136. This can be accompliεhed by a εingle nucleotide mutation in each codon. The DNA εequence encoding bFGF(MAGS) iε inserted into an appropriate expresεion vector in which it is operably linked to a regulatory εequence which iε capable of directing expression of the coding εequence in a hoεt cell. "Regulatory sequence" refers to a DNA sequence or εequenceε which are capable, when properly ligated to the coding sequence, of effecting its expresεion in a hoεt compatible with εuch εequenceε. Such regulatory sequences include at least promoters in both prokaryotic and eukaryotic hosts, and optionally, operator sequenceε, enhancerε and transcription termination signals. Additional factors necessary or helpful in effecting expresεion in a particular host can be used. "Operably linked" refers to a juxtapoεition wherein the components are configured so as to perform their usual function. Thus, regulatory sequences operably linked to a coding sequence are capable of effecting the expreεεion of the coding sequence. As thoεe skilled in the art will know, the expreεεion vector can alεo have an origin of replication which iε functional in the hoεt cell to be used. Desirably, the vector alεo containε a phenotypic marker, εuch as a gene for antibiotic resiεtance, which allowε the identification and εelection of hoεt cells carrying the vector.
The expression vector is used to transform a suitable hoεt cell. Both prokaryotic and eukaryotic hosts can be employed. Prokaryotes most frequently are repreεented by variouε εtrainε of E_^ coli, however, other microbial strains may be employed. E^ coli has exhibited the ability to poεt-tranεlationally proceεs the N-terminal methionine residue of the 155-residue precursor form of human bFGF. Useful εtrainε of E^ coli include, for example, MC1061, DHl, RR1, CβOOhfl, K803, HB101, JA221, JM101, JM103 and B, with E_;_ coli B being a preferred hoεt. Plaεmid vectorε which contain replication sites, εelectable markers and regulatory sequences derived from a specieε compatible with the host are used; for example, E_;_ coli iε typically transformed using vectors derived from pBR322, a plaεmid derived by combining partε of plasmids obtained from two Salmonella species and an E_;_ coli strain by Bolivar et al., Gene (1977) 2_:95. pBR322 contains genes for ampicillin and tetracycline resistance and thus provides multiple selectable markers which can be either retained or destroyed in constructing the desired vector. Commonly used prokaryotic regulatory sequences which are defined herein to include promoters for transcription initiation, optionally with an operator, along with ribosome binding site sequences, include such commonly used promoters as the β-lactamase (penicillinase) and lactose (lac) promoter systems (Chang, et al., Nature (1977) 198:1056) , the tryptophan (trp) promoter system (Goeddel, et al., Nucleic Acidε Reε (1980) :4057), the lambda-derived PL promoter (Shimatake, et al., Nature (1981) 292:128) with the N-gene riboεome binding site, and the trp-lac (trc) promoter system (Amann, E., and Brosiuε, J., Gene (1985) -40:183) . In addition to bacteria, eukaryotic cells, such as yeaεt or Chineεe hamεter ovary (CHO) cells, may al.so be used as hosts. Those skilled in the art will know the uεeful regulatory sequences, origins of replication, markers, etc. which are useful in connection with variouε eukaryotic hosts.
The expression vector containing the coding εequence for bFGF(MAGS) is used to transform a host cell. Depending on the host cell used, transformation is done using standard techniques appropriate to such cells. The calcium treatment employing calcium chloride, as described by Cohen, S.N., Proc Natl Acad Sci (USA) (1972) 6_9:2110 or the RbCl2 method described in Maniatis, et al., Molecular Cloning: A Laboratory Manual (1982) Cold Spring harbor Preεε, p. 254 and Hanahan, D., J Mol Biol (1983) 166:557-580 may be used for prokaryoteε or other cells which contain subεtantial cell wall barrierε. For mammalian cells without such cell walls, the calcium phosphate precipitation method of Graham and van der Eb, Virology (1978) 5_2:546, optionally as modified by Wigler, M., et al., Cell (1979) 16:777-785, may be used. Transformations into yeast may be carried out according to the method of Beggs, J.D., Nature (1978) 275:104-109 or of Hinnen, A. et al., Proc Natl Acad Sci
Figure imgf000013_0001
Tranεformantε carrying the bFGF(MAGS) expreεεion vector can be identified by known techniqueε, depending on the particular phenotypic marker used in the construction of the vector, e.g. by growth in the preεence of an antibiotic .such as ampicillin where an antibiotic reεiεtance marker is employed. Various known techniques, such as restriction enzyme analysiε or εequencing by the dideoxy method, can be employed to verify the correct vector conεtruction. Expreεsion of bFGF(MAGS) can be effected under conditionε that will depend largely on the particular vector conεtruction and hoεt cell used and will be readily apparent to those skilled in the art. Where the vector contains the bFGF(MAGS) DNA sequence under the control of an inducible promoter, such as the trp promoter, the transformed hoεt cells can be used to inoculate a suitable growth medium, and grown to optimal density; expression of bFGF(MAGS) from the controlling promoter can then be induced by the addition of the appropriate inducer, e.g. 3-β-indoleacrylic acid in the case of the trp promoter. The expressed bFGF(MAGS) can be recovered by known techniques such as those employed in the art for the purification of bFGF from natural sources. In a preferred purification procedure, tranεformants containing. the expressed protein are lysed mechanically or chemically to release the protein. After treatment with DNase and- RNaεe, the reaction iε centrifuged and the εupernatant iε loaded onto a heparin-Sepharose column which can be obtained commercially (Pharmacia, Inc.). After waεhing the column with a NaCl buffer having a εalt concentration of about
1.0 M or less, the bFGF(MAGS) can be elύted from the column in 2.0 M NaCl. If desired, the heparin-Sepharose chromatography step can be repeated or combined with other known protein purification stepε, εuch aε ion exchange chromatography on S/P Sephadex or Mono S reεins. For commercial scale production, copper chelate affinity chromatography may be preferable to the heparin-Sepharose chromatography, since it may be undesirable to have even a small amount of heparin in the final formulation. Quite surpriεingly, when bFGF(MAGS) waε expreεεed in E^_ coli B, it was found that expresεion levelε were on the order of 50% to 100% greater than expression of the corresponding wild-type (non-mutated) human bFGF using the same host-vector system and the same expression conditions. In particular, the method of the invention allows one to express bFGF(MAGS) at levels of at least 10% of the total protein expresεed by the host.cell. Furthermore, N-terminal amino acid analysiε indicateε that expreεεion of bFGF(MAGS) in E^ coli B results in a final protein product which has an essentially homogeneous N-terminus; that is, greater than 95%, preferably greater that 98% of the bFGF has an identical N-terminus when the protein iε subjected to N-terminal sequence analysis by Edman degradation. It has been found that prokaryotic hosts such as E_^ coli are capable of processing off the N-terminal methionine residue encoded by the ATG start codon of bFGF. Accordingly, the method of the invention results in the recovery of bFGF having 153 amino acid residues with the N-terminal sequence Ala-Gly-Ser-.
The bFGF(MAGS) provided by the invention has the εame utilities as the correεponding bFGF having the N-terminal εequence Ala-Ala-Gly-Ser-, or a mixed N-terminus. The bFGF(MAGS) is uεeful in encouraging the healing of woundε. Purified bFGF(MAGS) is generally applied topically to the traumatized tisεue in order to stimulate vaεcularization and healing. Appropriate substrates are burns, dermal ulcers, surgical abrasions such as those of plastic surgery, or other wound situations requiring repair. Because application of bFGF(MAGS) accelerates healing, it also reduces the risk of infection.
Indications wherein bFGF(MAGS) is of value in encouraging neovaεcularization include muεculo-skeletal conditions εuch aε bone fractureε, ligament and tendon repair, tendonitiε, and burεitiε; εkin conditions such as burns, cuts, lacerations, bed εoreε, and εlow-healing ulcers such aε thoεe εeen in diabetes; and in tisεue repair during ischemia and myocardial infarction.
Formulationε of the recombinantly produced bFGF(MAGS) using available excipients and carriers are prepared according to standard methods known to those in the art. The protein can be formulated as lotionε, aε gelε, aε. part of a controlled releaεe system, or as ointments with additional active ingredients, εuch aε antibioticε, if desired. For topical administration, which iε the most appropriate with regard to superficial lesions, standard topical formulationε are employed using, for example, 0.1-100 μg of bFGF(MAGS) per cm2 of affected εurface area. Such εolutionε would be applied aε εeldom aε juεt once to the affected area to aε often as two times a day over a two to four week period (or poεεibly longer in εome cases of impaired healing situations). The concentration of the bFGF(MAGS) and other ingredients in the formulation depends, of course, on the nature and severity of the wound and the nature of the subject. The dose may be lowered with time to lessen likelihood of scarring. For example, the most severe wounds, such as third degree burns, may be treated with a 100 g/cm2 dose of bFGF(MAGS), but as healing begins, the dose may be progreεεively dropped to approximately 0.1
//g/cm2 or lower, aε the wound heals. A topical formulation for FGF uεing BSA aε carrier was discloεed by Franklin, J.D., et al., Plaεtic and Reconstruc Surg (1979) 64:766-770. For bone and deeper (non-surface) soft tisεue repair, adminiεtration is preferred locally, but by means of injection or slow release formulation implanted directly proximal to the target. Surgery may be required for such conditions aε bone injurieε, thuε making implantation directly practical. Slow-releaεe formε can be formulated in polymerε, such aε .Hydron (Langer, R., et al., Nature (1976) 263:797-799) or Elvax 40P (Dupont) (Murray, J.B., et al., In Vitro (1983) 3^:743-747). Other εustained-release systems have been suggested by Hsieh, D.S.T., et al., Pharm Sci (1983) 72^: 11-22 ) , and a formulation specifically for epidermal growth factor, but not preferred in the present invention, is suggested by Buckley, A., et al., Proc Natl Acad Sci (USA) (1985) £2:7340-7344.-
As with topical administration, for suεtained- release delivery, the concentration of bFGF(MAGS) in the formulation dependε on a number of factors, including the nature and severity of the .condition and the rate of bFGF(MAGS) releaεe from the polymer. In general, the formulationε are conεtructed so as to achieve a constant local concentration of about 10 times the tisεue concentration, as described by'Buckley, et al. (Proc Natl Acad Sci (USA) , supra) . Based on a bFGF concentration in tisεue of 5-50 ng/g wet weight (comparable to EGF at 60 ng/g wet weight), release of 50-5000 ng FGF per hour iε acceptable. The initial concentration, of course, depends on the severity of the wound.
It iε expected that bFGF(MAGS) may act in concert, and even synergistically, with other growth factorε such aε epidermal growth factor (EGF), the transforming growth factorε (TGF-α or TGF-β), inεulin-like growth factorε (IGF-1 and IGF-2), Iamin (a Gly-His-Lys tripeptide) and/or platelet-derived growth factor (PDGF). In addition, εpecifically for bone repair, it may act in εynergy with antagoniεtε of parathyroid hormone, εince parathyroid hormone promoteε bone resorption. Therefore, also included within the compositions and administration protocols of the invention are embodiments wherein the bFGF(MAGS) of the invention is administered in the same composition with, or in the same protocol with, one or more of the foregoing factors, thuε more effectively to achieve the deεired tiεεue repair.
Since bFGF(MAGS) iε effective in promoting neurite outgrowth, nerve regeneration, and neuronal survival, it may be useful for treatment of certain neurological disorders εuch as Alzheimer's and Parkinson'ε diεeaεeε, amyotrophic lateral εcleroεiε, and general aging of the nervous system, as well as traumatic injury to the spinal cord and peripheral nerves.
Administration of the drug for these indicationε iε preferably by implant in formulations similar to those set forth above in connection with wound healing. The drug may also be delivered by means of implants of cell cultures as in transplant therapy by treating the cultures prior to transplantation, with the bFGF(MAGS) preparationε of the invention or by engineering the cellε by recombinant DNA technology to produce bFGF(MAGS). In addition, the bFGF(MAGS) may be injected directly to the spinal fluid, or may be applied εyεtemically. Syεtemic formulations are generally as known in the art and include formulation in buffer or physiological saline, or other appropriate excipient. Dosage levels for systemic formulations are sufficient to deliver to the site of action a local concentration similar to that employed in the topical formulations described above. For tissue culture or explant maintenance, it may be supplied at 0.1-10 ng/ml of serum or culture medium. bFGF(MAGS) is particularly useful in aiding the reformation and repair of tisεueε traumatized during εurgery. For thiε uεe, it may be helpful to embed the bFGF(MAGS) in polymerε uεed aε εurgical stapleε. The proteinε are thuε able to εuppleraent biologically the mechanical εuturing effected by the εtapleε, and to augment and abet the "natural" healing proceεεeε in the repairing tissues. In addition, it has been shown that angiogenic stimuli, such as those provided by the bFGF(MAGS) discuεεed herein, result in the releaεe of tiεεue plaεminogen activator (tPA) and of collagenaεe :in vitro from endothelial cellε (Groεε, J.L., et al., Proc Natl Acad Sci (USA) (1983) £0:2623). Therefore, the bFGF(MAGS) of the invention iε alεo useful in treatment of conditionε which reεpond to theεe enzymeε. While it may be neceεsary in acute situations (such as the presence of a blood clot asεociated with stroke or heart attack) directly to administer large doses of tPA to dissolve the clot, for treatment of chronic propensity to form embolisms, administration of bFGF(MAGS) to maintain a suitable level of tPA in the blood stream may be desirable. Therefore, for this indication, εyεtemic administration of the drug, using conventional meanε εuch aε intramuscular or intravenous injection, is preferred.
The following examples are intended to illustrate further the practice of the invention and are not intended to limit the εcope of the invention in any way. The cDNA encoding bovine bFGF uεed aε a εtarting material was obtained initially by εcreening a bovine genomic library and obtaining a pivotal probe, followed by retrieval of additional DNA as described in detail in PCT publication WO 87/01728. However, it would not be necesεary to repeat this procedure, as the sequence of the pivotal probe and of the coding regions for bovine and human bFGF are now known and could thus be conεtructed chemically i vitro. In addition, bacteriophage harboring human and bovine bFGF εequenceε are depoεited at the American Type Culture Collection. Thuε, the bFGF DNA εequence uεed as the εtarting material in the following examples iε available from a variety of sources.
Example 1 Construction of pTrp-233 Bacterial Expression Plasmid
A. Construction of the Synthetic Tryptophan Operon Promoter and Operator Regulatory Sequence
The ten oligodeoxynucleotides εhown in Fig. 3A were synthesized by the phosphotrieεter method and purified. 500 pmole of each oligodeoxynucleotide except 1 and 10 were phosphorylated individually in 20 μl containing 60 mM Triε-HCl, pH 8, 15 mM DTT, 10 mM MgCl2, 20 Ci of [γ~ 32p]-ATP and 20 units of polynucleotide kinase (P/L Biochemicals) for 30 min. at 37°C. Thiε waε followed by the addition of 10 μl containing 60 mM Triε-HCl, pH 8, 15 mM DTT, 10 mM MgCl2, 1.5 mM ATP and 20 additional unitε of polynucleotide kinaεe followed by another 30 min incubation at 37°C. Following incubation the samples were incubated at 100°C for 5 min. 500 pmole of oligodeoxynucleotides 1 and 10 were diluted to 30 μl in the above buffer without ATP. 16.7 pmole of each oligodeoxynucleotide constituting a double stranded pair (e.g. oligodeoxy- - nucleotides 1 and 2, 3 and 4, etc. Fig. 3A) were mixed and incubated at 90°C for 2 min followed by εlow cooling to room temperature. Each pair waε then combined with the others in the construction and extracted with phenol/chloroform followed by ethanol precipitation. The oligodeoxynucleotide pairs were reconεtituted in 30 μl containing 5 mM Triε-HCl, pH 8, 10 mM MgCl2r 20 mM DTT, heated to 50°C for 10 min and allowed to cool to room temperature followed by the addition of ATP to a final concentration of 0.5 mM. 800 units of T4 DNA ligaεe were added and the mixture incubated at 12.5°C for 12-16 hourε. The ligation mixture waε extracted with phenol/chloroform and the DNA ethanol precipitated. The dried DNA waε reconεtituted in 30 μl and digeεted with EcoRl and Pstl for 1 hour at 37°C. The mixture was extracted with phenol/chloroform and ethanol precipitated followed by separation of the various double εtranded DNA .εegments by electrophoreεiε on an 8% polyacrylamide gel, according to the method of Laemmli, Nature (1970) 227:680. The DNA fragmentε were viεualized by wet gel autoradiography and a band correεponding to approximately 100 bp in length waε cut out and eluted overnight. The exciεed εynthetic DNA fragment waε ligated to plaεmidε Ml3mp8 or Ml3mp9 (Meεεing, J. and Vieira, J., Gene (1982) L9:269) similarly digested with EcoRI and Pstl, and submitted to dideoxynucleotide εequence analysiε (Sanger, F., et al., Proc Natl Acad Sci (USA) (1977) 7_4:5463) to confirm the deεigned sequence aε shown in Fig. 3A. The M13 derivative containing the correct εequence was named Ml3-trp. The deεigned εequence in Ml3-trp containε the promoter (-35 and -10 regionε) and operator regionε of the tryptophan (trp) operon aε well aε the ribosome binding region of the trp operon leader peptide (Fig. 3B). Analogouε sequences to that shown in Fig. 3B have been proven to be useful in the expresεion of heterologous proteins in E. coli (Hallewell, R.A., and Emtage, S., Gene (1980) :27, Ikehara, M. , et al., Proc Natl Acad Sci (USA) (1984) 81:5956). B. Construction of the Synthetic trp Promoter/Operator- Containing Plaεmid, pTrp-233
Plasmid pKK233-2 (Fig. 4A; A ann, E. and Broεiuε, J., supra) was digested to completion with Ndel followed by 5 the filling in of the termini by the method of Maniatiε, et al. , Molecular Cloning, Cold Spring Harbor Laboratories (1982) at p. 394, with 5 unitε of E^ coli DNA Polymeraεe I, Klenow fragment (Boehringer-Mannheim, Inc.) and the addition of dATP, dCTP, dGTP and TTP to 50 M. This was incubated at
10 25βC for 20 min. Following phenol/chloroform extraction and ethanol precipitation, the Ndel-digested DNA waε re-ligated and transformed into E___ coli (Nakamura, K. , et al., J Mol Appl Genet (1982) 1^:289). The resulting plasmid lacking the Ndel site waε deεignated pKK233-2-Nde (Fig. 4B).
15 Twenty nanogramε of plaεmid pKK233-2-Nde waε digeεted to completion with EcoRI and Pstl followed by calf intestinal phosphatase treatment (Boehringer-Mannheim) in accordance with Maniatiε, et al., εupra at pp. 133-134. Fifty nanogramε of the εynthetic trp promoter/operator
20 εequence were obtained from Ml3-trp (deεcribed above) by digesting the replicative form (double-stranded DNA form) of thiε phage with EcoRI and Pεtl, and were mixed with ten nanogramε of EcoRI-Pεtl digeεted pKK233-2-Nde. After ligation with T4 DNA ligaεe aε deεcribed, the mixture waε
25 tranεformed into E^_ coli JA221 lpp~/I'lad. Tranεformants were screened for the presence of plasmid DNA containing the 100 bp EcoRI-Pstl synthetic trp promoter/operator; the correct plaεmid waε then isolated and designated pTrp-233. A plasmid map of the 4.4-kb plasmid pTrp-233 is εhown in
30 Fig. 4C.
35 Exa ple 2 Construction of Plaεmid pTεFll
A. Conεtruction of a cDNA Sequence Encoding Human Basic Fibroblast Growth Factor
The bovine basic FGF cDNA contained in the clone XBB2 waε uεed to develop hybridization probes to isolate basic FGF clones from human cDNA and genomic libraries aε described in PCT publication WO 87/01728; Abraham, J.A., et al. , Science (1986), supra; and Abraham, J.A. et al., The EMBO Journal (1986), supra, all of which are incorporated herein by reference.
There are two amino acid differences between the 155-residue precursor formε of bovine basic FGF and human basic FGF: at position 121, where the bovine protein has Ser and the human protein has Thr; and at position 137,- where the bovine protein has Pro and the human has Ser. Theεe differenceε correεpond to a εingle nucleotide difference, in each caεe, in the codon for the amino acid at that poεition; therefore, a bovine cDNA may conveniently be modified by εite-εpecific mutageneεiε as described below to encode the human protein, and, indeed, standard site- specific mutagenesis techniques were used to alter these codons. The XBB2 clone (ATCC No. 40196) was digested with EcόRI and the 1.4. kb region spanning the bFGF protein- encoding sequence was ligated into the EcoRI εite of Ml3mp8, and phage carrying the insert in the correct orientation were recovered. A first round of iri vitro mutagenesiε waε carried out in the preεence of three oligonucleotideε: the "universal" primer, a .1.7-mer; the mutagenic 16-mer
5'-GAAATACACCAGTTGG-3' , which alters the coding εequence at codon 121, and the mutagenic 17-mer 5'-ACTTGGATCCAAAACAG-3' , which alters the sequence at codon 137. The resulting mutagenized phage was then subjected to a second round of jLn vitro primer-directed mutagenesis to create a Hindlll site 34 bp downstream from- the translation termination codon using the mutagenic 25-mer, 5'-TTTTACATGAAGCTTTATATTTCAG-3' . The reεultant mutated DNA waε εequenced by dideoxynucleotide εequence analyεiε (Sanger et al., εupra) to confirm that the deεired mutageneεis had occurred. The approximately 640 bp fragment spanning the FGF coding region was exciεed with Hindlll from the replicative form of the mutated M13 phage DNA and ligated into Hindlll-digeεted pUCl3 (Meεεi.ng, J., Methodε Enzymol (1983) 101:20) to obtain the intermediate plaεmid pJJl5-l.
B. Construction of Human bFGF cDNA with Synthetic Coding Region for N-terminal End
In order to lower the G + C content of the 5' end (the firεt 125 bp) of the coding region contained in pJJlδ-1, a synthetic DNA fragment was constructed with the εequence εhown below uεing the εynthetic oligonucleotides liεted above the contiguouε sequence. The oligonucleotides were annealed in pairs, ligated together sequentially, and ligated into Hindlll-cut Ml3mp9. The εequence of the synthetic 135 bp insert cloned into Ml3mp9 waε confirmed by dideoxy sequencing. The replicative form of the Ml3mp9 phage carrying the synthetic fragment was digested with Hindlll and the 135 bp fragment was isolated. This fragment was ligated into Hindlll-cut pUC9. The resulting plasmid was then digested with Ndel and Hhal and the 126 bp subfragment of the εynthetic inεert waε iεolated. This 126 bp Ndel to Hhal subfragment waε joined to the 377 bp Hhal-to-Hindlll DNA fragment from JJ15-1 that εpanε approximately the carboxy-terminal three quarterε of the basic FGF coding sequence, and was then ligated into the Ndel and Hindlll sites of the expression vector pTrp-233 to yield the plasmid pTsFll (Fig. 5A, 5B). Oligonucleotideε: Number Sequence
1670 5'-pAGCTTCATATGGCTGCTGGTTCTATCACTACC 1623R 5'-pCTGCCAGCTCTGCCAGAAGACGGTGGTT 5 1624R 5'-pCTGGTGCCTTCCCACCAGGTCACTTCAA 1625R 5'-pAGACCCAAAACGTCTGTACTGCAAAAAC 1680 5'-pGGTGGTTTCTTCCTGCGCA 1679 5 '-pTAGAACCAGCAGCCATATGA 1622 5'-pTCTTCTGGCAGAGCTGGCAGGGTAGTGA 10 1619 5'-pACCTGGTGGGAAGGCACCAGAACCACCG 1626 5'-pAGTACAGACGTTTTGGGTCTTTGAAGTG 1673 5'-pAGCTTGCGCAGGAAGAAACCACCGTTTTTGC
15 Conεtruction of Synthetic Coding Region for the Amino Terminal Region of bFGF:
Hindlll Ndel
11 21 31 41 51
20 AGCTTCATATG GCTGCTGGTT CTATCACTAC CCTGCCAGCT CTGCCAGAAG
AGTATAC CGACGACCAA GATAGTGATG GGACGGTCGA GACGGTCTTC
61 71 81 91 101
25 ACGGTGGTTC TGGTGCCTTC CCACCAGGTC ACTTCAAAGA CCCAAAACGT
TGCCACCAAG ACCACGGAAG GGTGGTCCAG TGAAGTTTCT GGGTTTTGCA
Hhal 111 121 131 30 CTGTACTGCA AAAACGGTGG- TTTCTTCCTG CGCA
GACATGACGT TTTTGCCACC AAAGAAGGAC GCGTTCGA
Hindlll
35 Example 3 Production of pTεF-9Δβgal Expreεεion Vector for bFGF
A high-copy number expreεεion vector for expresεing bFGF under the control of the trp promoter/operator waε prepared according to the following procedure, which iε illustrated in Fig. 5. The plasmid pUC9 (Fig..5D; Vieira, J. and Mesεing, J., Gene (1982) lj}:259), containing an origin of replication (ori) functional in E___ coli , an ampicillin resistance gene, a lac promoter/operator and a polylinker region, waε digested with Pvul (New England Biolabs) and EcoRI (New England Biolabε) for 3.25 hours according to the manufacturer's instructionε.
Concurrently, pTεFll DNA (Fig. 5B) waε incubated as above with Pvul and EcoRI. The pUC9 and pTεFll fragments generated by digeεtion with the two reεtriction enzymes were ligated in the presence of T4 DNA ligase. The ligation reaction was transformed into E_;_ coli B. Plasmid DNA from ampicillin resiεtant colonieε of tranεformantε waε analyzed by plasmid size and restriction analysis to isolate a plasmid in which the appropriate fragment of pTεFll (the ~1.5 kb PvuI-EcoRI fragment containing the trp promoter/operator region, the bFGF coding region, the transcription termination sequenceε and the 5' half of the Amp gene) waε ligated to the -1.7 kb PvuI-EcoRI fragment of pUC9 (containing the origin of replication and 3' half of the Amp gene) in the orientation εhown in Fig. 5E. This - plasmid was designated pTsF-9. pTsF-9 DNA waε incubated with PvuII and EcoRI according to the manufacturer'ε directionε. The overhangε at the EcoRI cleavage εiteε were filled in by incubating the DNA with, deoxynucleoεide triphoεphateε and the Klenow fragment of DNA Polymeraεe I. The DNA waε recircularized by blunt "end ligation in the preεence of T4 DNA ligaεe. The ligation reaction was uεed to tranεform E_^ coli B to ampicillin reεiεtance. Plaεmid DNA from εingle colony transformants was analyzed by plasmid size and restriction analyεiε to iεolate the plaεmid identified aε pTεF-9Δβgal in Fig. 5F. Blunt end ligation of the filled-in EcoRI site and the PvuII εite reεultε in reεtoration of the EcoRI site in pTεF-9Δβgal. The plasmid pTsF-9Δβgal contains the bFGF coding εequence under the control of the trp promoter/operator, aε well aε an ampicillin reεiεtance gene and an origin of replication functional in E^_ coli.
Example 4 Production of DNA Sequence Encoding bFGF(MAGS)
Plaεmid FGFt7910 was constructed by ligating the -590 bp EcoRI-Hindlll DNA fragment of pTsFll (comprising the trp promoter/operator region and the DNA encoding.the 155- residue precursor form of human bFGF) into the EcoRI-Hindlll sites of M13mp9. Once the single-εtranded DNA of FGFt7-910 waε iεolated, jin vitro mutageneεiε waε carried out, aε deεcribed by Zoller and Smith, supra, uεing a εynthetic oligonucleotide coding for a portion of the N-terminuε of bFGF that waε miεεing a codon for one of the two alanineε immediately following the methionine encoded by the ATG start codon. Thiε mutageneεiε reεulted in the deletion of one of the codonε for alanine aε εhown below:
ATG GCT GCT GGT TCT ATC... ATG GCT GGT TCT AΪC...
Met Ala Ala Gly Ser lie... Met Ala Gly Ser lie..-.
One μq of the εingle εtranded DNA waε hybridized with 5 ng of the phoεphorylated mutagenic oligonucleotide 5'-pGTATCACATATGGCTGGTTCTATC-3f and 1 ng of the Ml3 universal sequencing primer (17 er purchased from P.L. Biochemicals) for 5 to 15 minutes at 55°C in 0.01 ml solution of 10 mM Triε-HCl pH 7.5, and 10 mM MgCl2- The reaction waε cooled to room temperature and then added to 0.01 ml of 0.12 mM of each of the deoxynucleoεide triphosphates dATP, dGTP, dCTP and TTP, 5 units Klenow fragment of DNA Polymeraεe I (Boehringer Mannheim), 20 units of T4 DNA ligase (New England Biolabs), and incubated for 4-6 hourε at 15°C. An aliquot (0.002 ml) of the reaction waε then added to competent E_;_ coli JM101 bacteria and 5 plated overnight on L agar plateε at 37°C. The DNA of the reεulting M13 plaqueε waε tranεferred to each of two nitrocelluloεe filterε, baked under vacuum at 80°C for 2 hours and then incubated for 2 hours at 42°C in pre- hybridization solution: 6 x SSC (1 x SSC is 150 mM NaCl,
10 15 mM sodium citrate, pH 7.0), 0.1% sodium dodecyl sulfate (SDS), 2 x Denhardt's (0.04% ficoll, 0.04% polyvinylpyrrolidone, 0.04% bovine εerum albumin) and 0.4 mg/ml of denatured salmon εperm DNA. The filters were then incubated for 3 hourε at 42°C with freεh pre-
15 hybridization εolution containing the mutagenic oligonucleotide which had been 5'-end labeled with [r_32p]_ATp ancj T4 polynucleotide kinaεe. The filterε were then washed with 4 x SSC at room temperature for 15 minutes, once for 15 minutes at 65°C, once at room temperature in
20 TMACl solution (3M tetramethylammonium chloride, 50 mM
Tris-HCl, pH 8.0, 2 mM EDTA, 0.1% SDS) and once at 65°C in TMACl εolution, and then uεed to expoεe X-ray film overnight at room temperature. Cloneε correεponding to dark duplicating poεitiveε on the X-ray film were then picked
25 from the original plate, the DNA waε iεolated and then analyzed for the mutated εequence by dideoxy εequencing. The replicative form DNA of the mutated M13 clone waε prepared, digeεted with EcoRI and Hindlll, and the DNA fragment encoding the mutated baεic FGF waε iεolated by
30 agaroεe gel electrophoresis. The εequence of the bFGF coding region in this fragment is given in Fig. 2.
Example 5 Conεtruction of Expression Vector for bFGF(MAGS) 35
An expression vector suitable for insertion of the DNA fragment encoding bFGF(MAGS) was prepared according to the procedure illuεtrated in Fig. 6. The previously deεcribed plaεmid pTrp-233 (Fig. 5A, Fig. 6A) waε digeεted . with EcoRI and Pvul according to the manufacturer's inεtructionε and the fragment containing the trp promoter/operator waε iεolated. Concurrently, pUC9 waε digeεted with EcoRI and Pvul and the fragment containing the origin of replication waε iεolated. The iεolated fragments were ligated in the preεence of T4 DNA ligase to produce pTrp-9, a plasmid containing the trp promoter/operator and polylinker region from pTrp-233 and the origin of replication, lac promoter/operator and polylinker from pUC9 (Fig. 6C). pTrp-9 was digested with EcoRI and PvuII and the EcoRI ends were filled in uεing DNA Polymeraεe I, Klenow fragment and deoxynucleoside triphosphateε, aε deεcribed above. The DNA was recircularized by blunt end ligation. in the preεence of T4 DNA ligaεe. The ligation reaction waε uεed to tranεform E_;_ coli B to ampicillin reεiεtance. Plasmid DNA from single colony tranεformantε waε analyzed by plaεmid size and reεtriction analyεiε to iεolate the plaεmid identified aε pTεF-9Δβgal-GM-2 (Fig. 6D).
Plaεmid pTεF-9Δβgal-GM-2 waε incubated with EcoRI and Hindlll in accordance with the manufacturer'ε directionε and the large fragment, containing the ampicillin reεiεtance gene and origin of replication, waε iεolated on an agaroεe gel. The EcoRI-Hindlll fragment containing the bFGF(MAGS) coding sequence and trp promoter/operator (Example 4) waε then ligated to the iεolated fragment of pTεF-9Δβgal-GM-2 in the presence of T4 DNA ligaεe. The ligation waε uεed to tranform competent E_^ coli W3110 cellε, which were then grown overnight on L agar plateε supplemented with 100 yug/ml ampicillin. Colonies were selected and grown in L broth supplemented with 100 /t/g/ml ampicillin; and plasmid DNA waε then isolated from the bacteria and analyzed by reεtriction digestion analysis to confirm the desired structure. The resultant plasmid, designated pTsF-9Δβgal(MAGS) , iε identical to pTsF-9Δβgal except for the subεtitution of the bFGF(MAGS) coding εequence for the bFGF coding εequence. Example 6 Expreεεion of bFGF and bFGF(MAGS)
The plasmids pTsF-9Δβgal and pTεF-9Δβgal(MAGS) were separately transformed into E_^ coli B cells. Single colonies were uεed to inoculate cultures in L+amp medium, which were then grown for 5 hourε at 30°C. Theεe cultures were uεed in turn to seed expresεion cultureε (1 to 100 dilution into M9 εaltε containing 0.5% caεamino acidε, 0.4% glucose, 2 /g/ml thiamine, 0.1 mM CaCl2r 0.8 mM MgSθ , and 50 g/ml ampicillin). The trp promoter waε induced with the addition of 50 //g/ml 3-β-indoleacrylic acid, and the cultureε were grown overnight at 30°C. After 14 to 18 hourε the A550 waε determined and one absorbance unit of cell pellet was resuspended in 100 μl of SDS-containing polyacrylamide gel loading buffer and boiled. 10 μl of the reεulting εupernatant waε loaded onto a 15% acryla ide-SDS gel and electrophoreεed. The gel waε εtained with Coomaεεie blue. Fig. 7 is a photograph of a stained gel with molecular weight markerε in lane 1. Laneε 2 and 3 were loaded with protein extracted from two cultureε of pTsF- 9Δβgal tranεformantε. Laneε 4 and 5 were loaded with protein extracted from two cultureε of pTεF-9Δβgal(MAGS) tranεf.ormantε. Lane 6 containε a bFGF εtandard. The bandε correεponding to bFGF(MAGS) in laneε 4 and 5 are viεibly darker than the bandε correεponding to bFGF in lanes 2 and 3.
The relative concentrations of the various protein species in lanes 2 through 5 were determined by scanning densitometry. Figs. 8A-8D show the densitometry plots for each of the lanes 2-5 respectively. The peaks representing bFGF or bFGF(MAGS) are labeled by arrows. The amount of bFGF or bFGF(MAGS) expresεed relative to the total cell protein waε calculated for each of the cultureε, baεed on the area under the curve in the denεitometer plot. The average expreεε.ion level for the two cultureε tranεformed with pTεF-9Δβgal (Figs. 8A-8B) was 6.7% of total cell protein, whereaε the average expreεεion level for the two cultureε tranεformed with pTsF-9Δβgal(MAGS) (Figε. 8C-8D) waε 10.8% of total cell protein.
Example 7
Determination of N-Terminal Sequence of bFGF(MAGS)
Uεing a procedure εimilar to that of Example 6, E. coli B cells tranεformed with pTεF-9Δβgal(MAGS) were grown in two literε of M9 media containing caεamino acidε and 50 /g/ml ampicillin. The culture waε grown to an optical denεity -of 0.58 (monitored at 550 nm) and induced with 50 /g/ml 3-β-indoleacrylic acid, after which it was incubated with εhaking overnight at 30°C. The culture waε centrifuged and the cell pellet waε reεuεpende.d in 30 ml of 20 mM Triε-HCl pH 7.5, 5 mM EDTA, 1 mM phenylmethylεulfonyl fluoride and 0.5 mg/ml lyεozyme. After 30 minuteε on ice, the εuεpension was sonicated to rupture the cells. 100 g each of RNase and DNaεe were added. After 30 minuteε on ice, the mixture waε centrifuged and the εupernatant waε saved for purification.
The supernatant waε applied to a column of SP- Sephadex (2.5 cm x 2 cm) equilibrated with 20 mM εodium phoεphate pH 7, 5 mM EDTA. The column waε washed with the same buffer until the absorbance at 280 nm returned to baseline levels. The protein was eluted from the column with 20 mM sodium phosphate pH 7, 5 mM EDTA, 500 mM NaCl. The 500 mM NaCl bump from the SP-Sephadex column waε loaded onto a column of heparin-Sepharose (2.5 cm x 2. cm) equilibrated with 20 mM Tris-HCl pH 7.5, 5 mM EDTA, 600 mM NaCl. The column waε washed with the same buffer until the absorbance at 280 nm returned' to baεeline levels. The protein was eluted with 20 mM Tris-HCl pH 7.5, 5 mM EDTA; 2 M NaCl. The bFGF(MAGS) thus obtained was subjected to N-terminal amino acid sequencing by the Edman degradation technique using an automated gas phase sequenator. When large amounts of protein were loaded onto the sequenator, very εmall quantities, i.e. 1-2%, of protein having the N-terminal sequence Gly-Ser- were detectable, the remainder of the protein having the N-terminal sequence Ala-Gly-Ser. When bFGF was produced and purified in eεεentially the εame manner uεing E_;_ coli B cellε tranεformed with pTsF-9Δβgal, the resulting protein exhibited a mixed N-terminal εequence comprising approximately 70% Ala-Ala-Gly-Ser- and 30% Ala-Gly-Ser-.

Claims

1. A method for producing baεic fibroblaεt growth factor having a homogeneouε N-terminus which compriεeε
5 expreεεing, in a host cell wherein the N-terminal methionine residue is post-tranεlationally removed, a DNA εequence encoding the 155-amino acid precurεor form of a mammalian basi.c fibroblast growth factor lesε one of the two alanine residues immediately following the N-terminal methionine; 10 and recovering the expresεed protein without the N-terminal methionine reεidue.
2. The method of claim 1, wherein the DNA coding εequence that iε expreεεed compriεeε a εequence encoding the
15 155-amino acid precurεor form of human baεic fibroblaεt. growth factor from which one of the two alanine reεidueε immediately following the N-terminal methionine reεidue haε been deleted.
20 3. The method of claim 2, wherein the DNA coding εequence that iε expreεεed compriεeε the coding εequence in Fig. 1 minuε the alanine (GCC) codon at baεeε 7-9.
4. The method of claim 2, wherein the DNA coding 25 εequence that iε expreεεed iε the coding εequence in Fig. 2.
5. The method of claim 1, wherein the baεic fibroblaεt growth factor is expressed at a level of at least 10% of the total protein expreεεed by the hoεt cell.
30
35
6. A vector for the expresεion of baεic fibroblast growth factor having a homogeneous N-terminus, comprising a DNA sequence encoding the 155-amino acid precurεor form of a mammalian basic fibroblast growth factor leεε one of the two alanine residueε immediately following the N-terminal methionine residue, said DNA sequence being operably linked to a regulatory sequence capable of directing its expresεion in a hoεt cell.
7. The vector of claim 6, wherein the baεic fibroblaεt growth factor-encoding DNA εequence compriεeε a sequence coding for the 155-amino acid precursor form of human baεic fibroblast growth factor from which one of the two alanine residueε immediately following the N-terminal methionine reεidue has been deleted.
8. The vector of claim 7, wherein the DNA εequence encoding the growth factor amino acid sequence compriseε the coding εequence in Fig. 1, minuε the alanine (GCC) codon at bases 7-9.
9. The vector of claim 7, wherein the DNA sequence encoding the growth factor amino acid sequence compriεe.ε the coding εequence in Fig. 2.
10. The vector of claim 7, wherein the regulatory εequence compriseε 'the trp promoter-operator εequence.
11. A host cell which has been transformed with the vector of claim 7.
12. The hoεt cell of claim 11, wherein the cell iε an E. coli cell.
13. The hoεt cell of claim 12, wherein the hoεt cell iε an E. coli B cell.
14. Human baεic fibroblast growth factor having, at its N-terminuε, the amino acid εequence Ala-Gly-Ser- εubstantially free of any human baεic fibroblast growth factor species having a different N-terminal amino acid sequence.
15. The human basic fibroblast growth factor of claim 14 having the 153-amino acid sequence beginning with Ala at amino acid poεition 3 in Fig. 1.
PCT/US1991/002186 1990-03-29 1991-03-28 High level expression of basic fibroblast growth factor having a homogeneous n-terminus WO1991014785A1 (en)

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