USRE39548E1 - Interleukin-5 specific recombinant antibodies - Google Patents
Interleukin-5 specific recombinant antibodies Download PDFInfo
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- USRE39548E1 USRE39548E1 US10/012,579 US1257901A USRE39548E US RE39548 E1 USRE39548 E1 US RE39548E1 US 1257901 A US1257901 A US 1257901A US RE39548 E USRE39548 E US RE39548E
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/24—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against cytokines, lymphokines or interferons
- C07K16/244—Interleukins [IL]
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
Definitions
- the present invention relates to a recombinant antibody molecule (RAM), and especially a humanized antibody molecule (HAM) having specificity for human interleukin-5 (hIL-5), the nucleic acids which encode the heavy and light chain variable domains of said recombinant antibody, a process for producing said antibody using recombinant DNA technology and the therapeutic use of the recombinant antibody.
- RAM recombinant antibody molecule
- HAM humanized antibody molecule having specificity for human interleukin-5 (hIL-5), the nucleic acids which encode the heavy and light chain variable domains of said recombinant antibody
- hIL-5 human interleukin-5
- the term “recombinant antibody molecule” is used to describe an antibody produced by a process involving the use of recombinant DNA technology.
- the term “humanized antibody molecule” (HAM) is used to describe a molecule being derived from a human immunoglobulin.
- the antigen binding site may comprise either complete variable domains fused onto constant domains or one of more complementary determining regions (CDRs) grafted onto appropriate framework regions in the variable domain.
- CDRs complementary determining regions
- MAb is used to indicate a monoclonal antibody.
- the term “recombinant antibody molecule” includes not only complete immunoglobulin molecules but also any antigen binding immunoglobulin fragments, such as Pv, Fab and F(ab′) 2 fragments, and any derivatives thereof, such as single chain Fv fragments.
- a method for determining which variable domain residues of an animal MAb which should be selected for humanization comprising determining potential minimum residues (residues which comprise CDR structural loops and the residues required to support and/or orientate the CDR structural loops) and maximum residues (residues which comprise Kabat CDRs, CDR structural loops, residues required to support and/or orientate the CDR structural loops and residues which fall within about 10 ⁇ of a CDR structural loop and posses a water solvent accessible surface of about 5 ⁇ 2 or greater) of the animal monoclonal antibody.
- computer modelling is performed on all possible recombinant antibodies, comprising the human antibody framework sequence into which minimum and maximum residues have been inserted.
- the minimum or maximum residues are selected based on the combination which produces a recombinant antibody having a computer-model structure closest to that of the animal monoclonal antibody.
- the humanized and-IL-5 antibody obtained appears to have lost a substantial amount of its affinity for the hIL-5 molecule.
- the present invention provides a RAM having affinity for human IL-5 and comprising antigen binding regions derived from heavy and/or light chain variable domains of a donor antibody having affinity for human IL-5, the RAM having a binding affinity similar to that of the donor antibody.
- variable domains of the heavy and light chains of MAb 39D10 are hereinafter specifically described with reference to FIGS. 1 and 2 .
- the RAM of the present invention is an anti-IL-5 antibody molecule having affinity for the human IL-5 antigen comprising a composite heavy chain and a complementary light chain, said composite heavy chain having a variable domain comprising predominantly acceptor antibody heavy chain framework residues and donor antibody heavy chain antigen-binding residues, said donor antibody having affinity for human IL-5, wherein said composite heavy chain comprises donor residues at least at positions 31-35, 50-65 and 95-102 (according to the Kabat numbering system) [Kabat et al., sequences of Proteins of Immunological Interest, Vol I. Fifth Edition, 1991, US Department of Health and Human Services, National Institute of Health].
- the composite heavy chain framework additionally comprises donor residues at positions 23, 24, 27-30, 37, 49, 73 and 76-78 or 24, 27-30, 37, 49, 73, 76 and 78.
- an anti-IL-5 antibody molecule having affinity for a human IL-5 antigen comprising a composite light chain and a complementary heavy chain, said composite light chain having a variable domain comprising predominantly acceptor antibody light chain framework residues and donor antibody light chain antigen-binding residues, said donor antibody having affinity for human IL-5, wherein said composite light chain comprises donor residues at least at positions 24-30, 50-56 and 89-97 (according to the Kabat numbering system).
- the composite light chain framework additionally comprises donor residues at positions 22, 68 and 71 or at positions 68 and 71.
- each RAM of the invention has an affinity constant for human IL-5 of greater than 10 ⁇ 9 M.
- the donor antibody may be any anti-IL-5 antibody derived from any animal.
- the acceptor antibody may be derived from an animal of the same species and may even be of the same antibody class or sub-class. More usually, however, the donor and acceptor antibodies are derived from animals from different species.
- the donor anti-IL-5 antibody is a non-human antibody, such as rodent MAb, and the acceptor antibody is a human antibody.
- acceptor variable framework sequence may be used having regard to class or type of the donor antibody from which the antigen binding regions are derived.
- type of acceptor framework used is of the same or similar or type as that of the donor antibody.
- the framework chosen has the most homology to the donor antibody.
- the human group II gamma germ line frameworks are used for the composite heavy chain and the human group I kappa germ line frameworks are used for the composite light chains.
- the constant region domains of the RAMs of the invention may be selected having regard to the proposed functions of the antibody, in particular the effector functions which may be required.
- the constant regions domains may be human IgA, IgE, IgG or IgM domains.
- IgG human constant region domains may be used, especially of the IgG1 and IgG3 isotype, when the humanized antibody molecule is intended for therapeutic uses, and antibody effector functions are required.
- IgG2 and IgG4 isotypes may be used where the humanized antibody molecule is intended for therapeutic purposes and antibody effector functions are not required, e.g. for specifically binding to and neutralizing the biological activity of human IL-5.
- Modified human constant region domains may also be used in which one or more amino acid residues have been altered or deleted to change a particular effector function.
- the constant region domains of the RAMs are human IgG4.
- residue designations given above and elsewhere in the present application are numbered according to the Kabat numbering [Kabat et al. Sequences of Proteins of Immunological Interest, Vol I. Fifth Edition, 1991, US Department of Health and Human Services, National Institute of Health]. Thus, the residue designations do not always correspond directly with a linear numbering of the amino acid residues.
- the actual linear amino acid sequence may contain fewer or additional amino acids than in the Kabat numbering, corresponding to a shortening of, or insertion into, the basic variable domain structure.
- the anti-IL-5 antibody molecules of the present invention may have attached to them effector or reporter molecules.
- the procedure of recombinant DNA technology may be used to produce immunoglobulin molecules in which the Fc fragment or CH3 domain of a complete immunoglobuln has been replaced by, or has been attached thereto by peptide linkage, a functional non-immunoglobulin protein, such as an enzyme, cytokine, growth factor or toxin molecule.
- the remainder of the antibody molecules need not comprise only sequences from immunoglobulins.
- a gene may be constructed in which a DNA sequence encoding part of a human immunoglobulin chain is fused to a DNA sequence encoding the amino acid sequence of a polypeptide effector or reporter molecule.
- Further aspects of the invention include DNA sequences coding for the composite heavy chain and the composite light chain.
- the cloning and expression vectors containing the DNA sequences, host cells transformed with the DNA sequences and the processes for producing the antibody molecules comprising expressing the DNA sequences in the transformed host cells are also further aspects of the invention.
- the DNA sequences which encode the anti-IL-5 donor amino acid sequences may be obtained by methods well known in the art (see, for example, International Patent Application No. WO 93/16184).
- the anti-IL-5 coding sequences may be obtained by genomic cloning or cDNA cloning from suitable hybridoma cell lines, e.g. the 39D10 cell line. Positive clones may be screened using appropriate probes for the heavy and light chains required. Also PCR cloning may be used.
- the DNA coding for acceptor amino acid sequences may be obtained in any appropriate way.
- DNA sequences coding for preferred human acceptor frameworks such as human group I light chains and human group III heavy chains, are widely available to workers in the art.
- the standard techniques of molecules biology may be used to prepare the desired DNA sequences.
- the sequences may be synthesized completely or in part using oligonucleotide synthesis techniques.
- Site-directed mutagenesis and polymerase chain reaction (PCR) techniques may be used as appropriate.
- oligonucleotide directed synthesis as described by Jones et al. [Nature, 321, 522 (1986)] may be used.
- ologonucleotide directed mutagenesis of a pre-existing variable regions as, for example, described by Verhoeyen et al. [Science, 239, 1534-1536 (1988)] may be used.
- Any suitable host cell and vector system may be used for the expression of DNA sequences coding for the RAM.
- eucaryotic, e.g. mammalian, host cell expression systems are used.
- suitable mammalian host cells include CHO cells and myeloma or hybridoma cell lines.
- a process for producing an anti-IL-5 RAM comprising:
- the process may involve the use of sequences encoding a composite light chain and a complementary heavy chain.
- the cell lines may be transfected with two vectors.
- the first vector may contain an operon encoding a composite or complementary heavy chain and the second vector may contain an operon encoding a complementary or composite light chain.
- the vectors are identical except insofar as the coding sequences and selectable markers are concerned so as to ensure as far as possible that each polypeptide chain is equally expressed.
- a single vector may be used, the vector including the sequences encoding both the heavy chain and the light chain.
- the DNA in the coding sequences for the heavy and light chains may comprise cDNA or genomic DNA or both.
- the present invention also includes therapeutic and diagnostic compositions comprising the RAMS and uses of such compositions in therapy and diagnosis.
- the invention provides a therapeutic or diagnostic composition
- a therapeutic or diagnostic composition comprising a RAM according to previous aspects of the invention in combination with a pharmaceutically acceptable excipient, diluent or carrier.
- compositions can be prepared using the RAMs of the present invention, for instance as whole antibodies, single chain Pv fragments or antibody fragments, such as Fab or Fv fragments. Such composition have IL-5 blocking or antagonistic effects and can be used to suppress IL-5 activity.
- compositions according to the invention may be formulated in accordance with conventional practice for administration by any suitable route, and may generally be in a liquid form [e.g. a solution of the RAM in a sterile physiologically acceptable buffer] for administration by for example an intravenous, intraperitoneal or intramuscular route; in spray form, for example for administration by a nasal or buccal route; or in a form suitable for implantation.
- a liquid form e.g. a solution of the RAM in a sterile physiologically acceptable buffer
- the invention also provides a method of therapy or diagnosis comprising administering an effective amount, preferably 0.1 to 10 mg/kg body weight, of a RAM according to previous aspects of the invention to a human or animal subject.
- an effective amount preferably 0.1 to 10 mg/kg body weight
- the exact dosage and total dose will vary according to the intended use of the RAM and on the age and condition of the patient to be treated.
- the RAM may be administered as a single dose, or in a continuous manner over a period of time. Doses may be repeated as appropriate.
- the RAM according to previous aspects of the invention may be used for any of the therapeutic uses for which anti-IL-5 antibodies, e.g. 39D10, have been used or may be used in the future.
- IL-5 is a primary activator or eosinophils, and blocking the function of this cytokine with antibodies has been shown to prevent or reduce eosinophilia which is associated with certain allergic diseases.
- the RA according to the invention may be used for this purpose, and in particular may be of use in the treatment of asthma, where it may be expected to prevent the accumulation and activation of eosinophilis in asthmatic lungs, thereby reducing bronchial inflammation and airway narrowing.
- the RAM according to the invention may advantageously be a single chain Fv fragment, formulated as a spray, for administration for example via the nasal route.
- the 39D10 rat monoclonal antibody raised against human IL-5 is used as the donor antibody.
- the variable domains of the heavy and light chains of 39D10 have previously been cloned (WO 93/16184) and the nucleotide and predicted amino acid sequences of these domains are shown in FIGS. 1 and 2 .
- the appropriate acceptor heavy and light chain variable domains must be determined and the amino acid sequence known.
- the RAM is then designed starting from the basis of the acceptor sequence.
- donor residues are substituted for acceptor residues in the CDRs.
- the CDRs are preferably defined as follows:
- Donor residues are used either at all of positions 24, 27 to 30, 37, 49, 73, 76 and 78 or at all of positions 23, 24, 27 to 30, 37, 49, 73 and 76 to 78 of the heavy chain.
- Donor residues are used either at all of positions 22, 68 and 71 or at all of positions 68 and 71.
- the present invention relates to a recombinant anti-IL-5 antibody molecule having a binding affinity substantially equal to that of the donor antibody.
- FIG. 1 shows the nucleotide and amino acid sequence of the 39D10 heavy chain
- FIG. 2 shows the nucleotide and amino acid sequence of the 39D10 light chain
- FIG. 3 shows the alignment of the 39D10 lightheavy chain variable domain framework regions with the lightheavy chain variable domain framework regions of the consensus sequence of the human group IIII lightheavy chains;
- FIG. 4 shows the alignment of the 39D10 heavylight chain variable domain framework regions with the heavylight chain variable domain framework regions of the consensus sequence of the human group IIII heavylight chains;
- FIG. 5 shows the nucleotide and amino acid sequence of the CDR grafted anti-IL-5 light chain CTIL-5-gL6; .
- the first twenty amino acid residues of SEQ ID No: 26 represent a leader sequence.
- the first amino acid residue of the mature protein is residue 21 .
- FIG. 6 shows the nucleotide and amino acid sequence of the CDR grafted anti-IL-5 heavy chain CTIL-5-10gH; .
- the first nineteen amino acid residues SEQ ID No: 28 represent a leader sequence.
- the first amino acid residue of the mature protein is residue 20 .
- FIG. 7 shows a map of plasmid pMR14
- FIG. 8 shows a map of plasmid pMR15.1
- FIG. 9 shows the affinity constants and association and disassociation rates of a chimeric 39D10 antibody and the CTIL-5-10gH-gL6 antibody
- FIG. 10 shows a graph of the neutralisation of IL-5 in the TF1 assay by a panel of antibodies
- FIG. 11 shows the results of a competition assay for rat 39D10, a chimeric 39D10 antibody and the CTIL-5-10gH/gL6 antibody.
- FIG. 12 shows the effect of CTIL-5-10gH/gL6 on monkey eosinophilia.
- a heavy chain Vh region was generated by PCR using the oligonucleotides R3601 and R2155. The sequences of these are:
- the reaction mixture (100 ⁇ l) contained 10 mM Tris-HCl pH 8.3, 1.5 mM MgCl, 50 mM KCl, 0.01% w/v gelatin, 0.25 mM of each deoxyribonucleoside triphosphate, 0.1 ⁇ g 39D10 heavy chain DNA, 6 pmoles of R3601 and R2155 and 0.25 units. Taq polymerase.
- the reaction mixture was heated at 94° C. for 5 minutes and then cycled through 94° C. for 1 minute, 55° C. for 1 minute and 72° C. for 1 minute.
- Vl light chain gene was generated from the original VL as described in WO 93/16184, clone by PCR with the oligonucleotides R3585 and R3597. The sequence of these are:
- a colony was identified, after transformation of E. coli LM1035, that contained a plasmid (pARH1215) with a Vl insert.
- the nucleotide sequence of the Vl insert is shown in FIG. 2 .
- 39D10 In order to decide on the most appropriate human acceptor frameworks for the CDR loops of 39D10, the main acid sequence of frameworks 1-3 of 39D10 were compared with those of known human kapps light chains, 39D10 was found to be most homologous to human group I light chains. Based on this, it was decided to use the human group I germ line frameworks for the CDR grafting. The homologies between these sequences are shown in FIG. 3 . Also shown is the homology between the framework 4 regions of 39D10 and the consensus sequence of known human group I light chains. The residues in 39D10 that differ from the human consensus sequence are underlined. The contribution that these residues might make to antigen binding was analysed and two genes were constructed for the CDR grafted light chain.
- CTIL-5gL5 and CTIL-5gL6 were also from 39D10 respectively.
- the nucleotide and amino acid sequences of CTIL-5-gL6 are shown in FIG. 5 .
- CTIL-5-9gH and CTIL-5-10gH were constructed in which either residues 23, 24, 27 to 30, 37, 49, 73 and 76 to 78 or residues 24, 27-30, 37, 49, 73, 76 and 78 respectively were from 39D10.
- the nucleotide and amino acid sequences of CTIL-5-10gH is shown in FIG. 6 .
- Chimeric (rat/human) and CDR grafted 39D10 were produced for biological evaluation by transient expression of the heavy and light chain pairs after co-transfection into Chinese Hamster ovary (CHO) cells using calcium phosphate precipitation.
- the calcium phosphate precipitate was prepared by mixing 1.25 ml of 0.25 M CaCl 2 containing 50 ⁇ g of each of heavy and light chain expression vectors with 1.25 ml of 2 ⁇ HBS (16.36 g NaCl, 11.9 gm HEPES and 0.4 g Na 2 HPO 4 in 1 liter water with the pH adjusted to 7.1 with NaOH) and adding immediately into the medium of the cells. After 3 hours at 37° C. in a CO 2 incubator, the medium and precipitate were removed and the cells shocked by the addition of 15 ml 15% glycerol in phosphate buffered saline (PBS) for 1 minute.
- PBS phosphate buffered saline
- the glycerol was removed, the cells washed once with PBS and incubated for 48-96 hours in 25 ml medium containing 10 KM sodium butyrate.
- Antibody was purified from the culture medium by binding to and elution from protein A—Sepharose, Antibody concentration was determined using a human Ig ELISA (see below).
- Antibody expression was assessed by transfecting pairs of heavy and light chain genes into CHO cells and, after three days incubation, measuring the amount of antibody accumulating in the culture medium by ELISA.
- the samples were titrated in the microtite wells in 2-fold dilutions to give a final volume of 0.1 in each well and the plates were incubated at room temperature for 1 hour with shaking. After the first incubation step, the plates were washed 10 times with distilled water and then incubated for 1 hour as before with 0.1 ml of a mouse monoclonal anti-human kapps (clone GD12) peroxidase conjugated anti-body (The Binding Site, code MP135) at a dilution of 1 in 700 in conjugate buffer. The plate was washed again and substrate solution (0.1 ml) added to each well.
- Recombinant human IL-5 was then passed over the Sensorchip at various concentrations (0.6 to 5 ⁇ g/ml) in the above buffer.
- the Sensorchip was cleaned after each run with 100 mM HCl and 100 mM orthophosphoric acid to remove bound IL-5 and antibody.
- the sensorgrams generated were analysed using the kinetics software available with the BIAcore machine.
- TF1 is an erythroleukemic cell line that requires GM-CSF for growth.
- GM-CSF can be replaced by IL-5 but in this instance the cells only survive and do not proliferate.
- IL-5 the dependence on IL-5 for survival means that TF1 cells can be used in a bioassay to compare the activities of various anti-IL-5 antibodies.
- Neutralisation by anti-IL-5 antibodies was measured using a constant amount of IL-5 (2 ng/ml) and variable amounts of antibody incubated with 5 ⁇ 10 4 cells per well in 96 flat bottomed plates for 3 days. For the last 4 hours, cells are cultured in the presence of 500 ⁇ g/ml Thiazolyl blue (MIT). This dye is converted into an insoluble purple form by mitochondrial enzymes in viable cells. The insoluble material was dissolved by incubating overnight after addition of 100 ⁇ l of 50% dimethyl formamide, 20% SDS pH4.7 and the amount of dye taken up determined spectrophotometrically. The levels of bioactive IL-5 remaining in the presence of the antibodies is extrapolated from a standard curve relating dye uptake to IL-5 concentration.
- MIT Thiazolyl blue
- Recombinant human IL-5 was diluted to 1 ⁇ g/ml in phosphate buffered saline (PBS) and 100 ⁇ l allquots added to microtitre plates (Costar Amine Binding plates) and incubated overnight at 4° C. Plates were washed three times with PBS containing 0.5% Tween 20 and any remaining active sites blocked with 2% bovine serum albumin (BSA) in PBS for 30 minutes. The plates were then aspirated and tapped dry.
- PBS phosphate buffered saline
- CTIL-5-10gH/gL6 Anti-IL-5 antibody
- CTIL-5-10gH/gL6 When administered, one hour before challenge with Ascaris, to responsive monkeys, CTIL-5-10gH/gL6 inhibits lung lavage eosinophilia 75% at a dose of 0.3 mg/kg i.v.
- This set of monkeys is not hyper-responsive to histamine so the effects of CTIL-5-10gH/gL6 on hyper-responsiveness could not be determined.
- CTIL-5-10gH/gL6 inhibits pulmonary eosinophilia at 1 mg/kg i.p.
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Abstract
Description
-
- heavy chain:
- CDR1: residues 31-35
- CDR2: residues 50-65
- CDR3: residues 95-102 light chain;
- CDR1: residues 24-34
- CDR2:
residues 50 to 56 - CDR3:
residues 89 to 97
|
SEQ ID NO:1 | |
|
SEQ ID NO:2 |
| SEQ ID NO:3 | |
| SEQ ID NO:4 |
PCR was carried out as described above. The PCR product was digested with enzymes BstBI and SplI and, after purification, ligated into pMR15.1 (
Claims (7)
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US10/012,579 USRE39548E1 (en) | 1994-06-17 | 2001-12-07 | Interleukin-5 specific recombinant antibodies |
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GB9412230 | 1994-06-17 | ||
GB9412230A GB9412230D0 (en) | 1994-06-17 | 1994-06-17 | Interleukin-5 specific recombiant antibodies |
US08/470,139 US5998586A (en) | 1994-06-17 | 1995-06-06 | Interleukin-5 specific recombinant antibodies |
US10/012,579 USRE39548E1 (en) | 1994-06-17 | 2001-12-07 | Interleukin-5 specific recombinant antibodies |
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US08/470,139 Reissue US5998586A (en) | 1994-06-17 | 1995-06-06 | Interleukin-5 specific recombinant antibodies |
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Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2012083370A1 (en) | 2010-12-22 | 2012-06-28 | Cephalon Australia Pty Ltd | Modified antibody with improved half-life |
US10577414B2 (en) | 2014-09-08 | 2020-03-03 | Cephalon, Inc. | Use of reslizumab to treat moderate to severe eosinophilic asthma |
US11224653B2 (en) | 2017-08-24 | 2022-01-18 | Cephalon, Inc. | Treatment strategy for non-responders to 100MG subcutaneous mepolizumab |
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