US9940708B2 - Systems and methods for double pulsed diffusional kurtosis imaging - Google Patents
Systems and methods for double pulsed diffusional kurtosis imaging Download PDFInfo
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- G01R33/44—Arrangements or instruments for measuring magnetic variables involving magnetic resonance using nuclear magnetic resonance [NMR]
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- G01R33/54—Signal processing systems, e.g. using pulse sequences ; Generation or control of pulse sequences; Operator console
- G01R33/56—Image enhancement or correction, e.g. subtraction or averaging techniques, e.g. improvement of signal-to-noise ratio and resolution
- G01R33/563—Image enhancement or correction, e.g. subtraction or averaging techniques, e.g. improvement of signal-to-noise ratio and resolution of moving material, e.g. flow contrast angiography
- G01R33/56341—Diffusion imaging
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Definitions
- the present disclosure relates generally to diffusional kurtosis imaging (DKI) and, more specifically, to systems and methods for double pulsed DKI (DP-DKI).
- DKI diffusional kurtosis imaging
- DP-DKI double pulsed DKI
- DKI diffusional kurtosis imaging
- Standard DKI utilizes conventional single pulsed field gradient (s-PFG) diffusion sequences, which have a single diffusion wave vector, q, for each signal acquisition.
- s-PFG single pulsed field gradient
- d-PFG diffusion sequences which have a pair of diffusion wave vectors, (q, q′), for each signal acquisition.
- d-PFG diffusion sequences also referred to as double-wave-vector sequences
- d-PFG diffusion sequences can detect microscopic diffusional anisotropy even when the data from the s-PFG diffusion sequences is isotropic.
- these d-PFG diffusion sequences have not been applied to DKI.
- the present disclosure relates generally to diffusional kurtosis imaging (DKI) and, more specifically, to systems and methods for double pulsed DKI (DP-DKI).
- DKI diffusional kurtosis imaging
- DP-DKI can extend traditional DKI, using single pulsed field gradient (s-PFG) diffusion sequences, to double pulsed field gradient (d-PFG) diffusion sequences.
- s-PFG single pulsed field gradient
- d-PFG double pulsed field gradient
- DP-DKI can reveal second order contributions can represent leading diffusion effects, which cannot be seen from data collected from imaging studies using s-PFG diffusion sequences.
- the present disclosure can include a system that performs DP-DKI.
- the system can include a non-transitory memory storing computer-executable instructions.
- the system can also include a processor that executes the computer-executable instructions.
- image data can be received.
- the image data can be acquired using d-PFG diffusion sequence.
- a six dimensional (6D) diffusional kurtosis can be determined for the image data.
- a magnitude of the image data can be determined in terms of the 6D diffusional kurtosis.
- the present disclosure can include a method for performing DKI.
- the method can include steps that can be performed by a system that includes a processor.
- the steps can include: receiving image data acquired using a d-PFG diffusion sequence, determining a 6D diffusional kurtosis of the image data, and determining a magnitude of the image data based on the 6D diffusional kurtosis.
- the present disclosure can include a method for diagnosing a medical condition in a subject.
- the method can include steps that can be performed by a system that includes a processor.
- the steps can include: receiving image data acquired using a double pulsed field gradient (d-PFG) diffusion sequence of the subject undergoing a magnetic resonance imaging (MRI) procedure; determining a magnitude of the image data in terms of a 6D diffusional kurtosis; and diagnosing the medical condition of the subject based on the magnitude of the image data.
- d-PFG double pulsed field gradient
- MRI magnetic resonance imaging
- FIG. 1 is a schematic block diagram showing a system that can perform double pulsed diffusional kurtosis imaging (DP-DKI) in accordance with an aspect of the present disclosure
- FIG. 2 is a schematic illustration showing a representative double pulsed field gradient (d-PFG) diffusion sequence that can be part of the data input into the system shown in FIG. 1 ;
- d-PFG double pulsed field gradient
- FIG. 3 is a schematic block diagram showing a magnitude determination unit that can be part of the system shown in FIG. 1 ;
- FIG. 4 is a process flow diagram illustrating a method performing DP-DKI in accordance with another aspect of the present disclosure
- FIG. 5 is a process flow diagram illustrating a method for diagnosing a medical condition in a subject undergoing a magnetic resonance imaging (MRI) procedure based on DP-DKI in accordance with another aspect of the present disclosure
- FIG. 6 shows example plots of ⁇ ( ⁇ tilde over (b) ⁇ ) and ⁇ tilde over ( ⁇ ) ⁇ ( ⁇ tilde over (b) ⁇ ) calculated for the cortex and external capsule of a single mouse brain;
- FIG. 7 shows example results for diffusivities ( D and ⁇ tilde over (D) ⁇ ) and kurtoses ( W and ⁇ tilde over (W) ⁇ ) in the cortex and external capsule for two mice;
- FIG. 8 shows example maps obtained with DP-DKI for one brain slice of a single mouse.
- the term “diffusion magnetic resonance imaging (dMRI)” can refer to a magnetic resonance imaging method that measures the diffusion of water molecules in biological tissues.
- the dMRI techniques allow for the diffusion to be measured both in vivo and non-invasively.
- diffusion patterns of water molecules can reveal microscopic details about tissue architecture (e.g., information about a disease state).
- the diffusion anisotropy of water in biological tissues can be quantified with the diffusion tensor (DT), which can describe the diffusion displacement probability using a Gaussian distribution function.
- DT imaging (DTI) can refer to a dMRI technique that uses a Gaussian approximation for the displacement probability distribution governing the random displacement of water molecules.
- the displacement probability distribution can deviate considerably from the Gaussian form.
- the term “diffusional kurtosis” can refer to a quantitative measure of the degree to which the displacement probability distribution deviates from the Gaussian form.
- DKI diffusional kurtosis imaging
- dMRI MRI technique
- DTI diffusional kurtosis imaging
- tissue microstructure which can provide information related to microscopic (e.g., intra-voxel) diffusional heterogeneity.
- DKI can be been applied to the study of a variety of neurological diseases, and neuro-degenerative diseases. Examples of such neurological diseases and neuro-degenerative diseases can include stroke, Alzheimer's disease, head trauma, schizophrenia, attention deficit hyperactivity disorder, etc.
- the term “pulsed field gradient (PFG)” can refer to a diffusion gradient (e.g., due to a short, timed pulse with spatial-dependent field intensity) that can be used in DKI.
- Data from such PFG studies can be referred to as “single pulsed field gradient (s-PFG) diffusion sequences.”
- Such s-PFG diffusion sequences can include a single diffusion wave vector, q, for each signal acquisition.
- Images from a PFG DKI using s-PFG diffusion sequences can be used, for example, to measure diffusion in biological tissues (e.g., neurological tissues), which can be used to characterize the microstructure of the biological tissues.
- double pulsed field gradient d-PFG
- double-wave-vector sequences can refer to multiple pairs diffusion gradients (e.g., due to short, timed pulses with spatial-dependent field intensity) that can be used in dMRI.
- Data from such d-PFG studies can be referred to as “d-PFG diffusion sequences.”
- Such d-PFG diffusion sequences can have a pair of diffusion wave vectors, (q, q′), for each signal acquisition.
- d-PFG diffusion sequences can be used in diffusional kurtosis to characterize tissue microstructure more completely than s-PFG diffusion sequences because d-PFG diffusion sequences reveal information beyond that available with s-PFG diffusion sequences (e.g., d-PFG diffusion sequences can detect microscopic diffusional anisotropy even when the data from the s-PFG diffusion sequences is isotropic).
- double pulsed diffusional kurtosis imaging can refer to an extension of traditional DKI to double pulsed field gradient (d-PFG) diffusion sequences.
- DP-DKI can use a six dimensional (6D) formulation to extend DKI to d-PFG diffusion sequences.
- the term “b-value” can refer to a factor of diffusion weighted sequences identifying the measurement's sensitivity to diffusion and determines the strength and duration of the diffusion gradients.
- the b-value can summarize the influence of the diffusion gradients on the corresponding diffusion weighted images. For example, the higher the b-value, the stronger the diffusion weighting.
- the term “subject” can refer to any warm-blooded organism including, but not limited to, a human being, a pig, a rat, a mouse, a dog, a cat, a goat, a sheep, a horse, a monkey, an ape, a rabbit, a cow, etc.
- the terms “subject” and “patient” can be used interchangeably herein.
- the present disclosure relates generally to diffusional kurtosis imaging (DKI).
- DKI can be particularly appropriate for double pulsed field gradient (d-PFG) diffusion sequences at least because DKI can isolate the contributions to the d-PFG diffusion sequences that can be quantified to the second order in the diffusion weighting (b-value).
- the present disclosure relates, more specifically, to systems and methods for double pulsed DKI (DP-DKI) that extend DKI to d-PFG diffusion sequences.
- DP-DKI can extend DKI to d-PFG diffusion sequences by using a six dimensional (6D) formulation for q-space.
- the wave vector pair of the d-PFG diffusion sequences, (q,q′) can be represented as a single six-dimensional (6D) wave vector ⁇ tilde over (q) ⁇ .
- the first three components of ⁇ tilde over (q) ⁇ can correspond to q and the second three components of ⁇ tilde over (q) ⁇ can correspond to q′.
- the contributions to the d-PFG diffusion sequences can be quantified to second order in the diffusion weighting (b-value) in terms of the 6D diffusional kurtosis. In some instances, the contributions can also be quantified in terms of the 6D diffusivity. These second order contributions can represent leading diffusion effects, which cannot be seen from single PFG (s-PFG) diffusion sequences of traditional DKI.
- One aspect of the present disclosure can include a system that can perform double pulsed diffusional kurtosis imaging (DP-DKI).
- DP-DKI can extend diffusional kurtosis imaging (DKI) to double pulsed field gradient (d-PFG) diffusion magnetic resonance imaging (dMRI) sequences (d-PFG diffusion sequences).
- the system can provide a practical approach for acquiring and analyzing data associated with the d-PFG diffusion sequences.
- the system can interpret the leading d-PFG effects in terms of the kurtosis for a diffusion displacement probability density function (dPDF) in a six-dimensional (6D) space.
- dPDF diffusion displacement probability density function
- 6D diffusional kurtosis can encode the unique information provided by the d-PFG diffusion sequences up to second order in the b-value, which can lead to a compact expression for the signal magnitude.
- FIG. 1 illustrates an example of a system 10 that perform DP-DKI, according to an aspect of the present disclosure.
- FIG. 1 is schematically illustrated as block diagrams with the different blocks representing different components.
- the functions of one or more of the components can be implemented by computer program instructions.
- These computer program instructions can be provided to a processor of a general purpose computer, special purpose computer, and/or other programmable data processing apparatus to produce a machine, such that the instructions, which execute via the processor of the computer and/or other programmable data processing apparatus, create a mechanism for implementing the functions of the components specified in the block diagrams.
- These computer program instructions can also be stored in a non-transitory computer-readable memory that can direct a computer or other programmable data processing apparatus to function in a particular manner, such that the instructions stored in the non-transitory computer-readable memory produce an article of manufacture including instructions, which implement the function specified in the block diagrams and associated description.
- the computer program instructions can also be loaded onto a computer or other programmable data processing apparatus to cause a series of operational steps to be performed on the computer or other programmable apparatus to produce a computer-implemented process such that the instructions that execute on the computer or other programmable apparatus provide steps for implementing the functions of the components specified in the block diagrams and the associated description.
- system 10 described herein can be embodied at least in part in hardware and/or in software (including firmware, resident software, micro-code, etc.).
- aspects of the system 10 can take the form of a computer program product on a computer-usable or computer-readable storage medium having computer-usable or computer-readable program code embodied in the medium for use by or in connection with an instruction execution system.
- a computer-usable or computer-readable medium can be any non-transitory medium that is not a transitory signal and can contain or store the program for use by or in connection with the instruction or execution of a system, apparatus, or device.
- the computer-usable or computer-readable medium can be, for example but not limited to, an electronic, magnetic, optical, electromagnetic, infrared, or semiconductor system, apparatus or device. More specific examples (a non-exhaustive list) of the computer-readable medium can include the following: a portable computer diskette; a random access memory; a read-only memory; an erasable programmable read-only memory (or Flash memory); and a portable compact disc read-only memory.
- one aspect of the present disclosure can include a system 10 configured to perform DP-DKI.
- DP-DKI can extend DKI to d-PFG diffusion sequences, interpreting the leading d-PFG effects in terms of the kurtosis for a diffusion displacement probability density function (dPDF) in a six-dimensional (6D) space, which can lead to a compact expression for the signal magnitude.
- the system 10 can be utilized to aid in the diagnosis of a medical condition in a patient undergoing a dMRI procedure and/or imaging study.
- the medical condition can be a neurological disease and/or a neuro-degenerative disease (e.g., stroke, Alzheimer's disease, head trauma, schizophrenia, attention deficit hyperactivity disorder, etc.).
- the system 10 can include components including at least a receiver 12 and a magnitude determination unit 14 .
- One or more of the components can include instructions that are stored in a non-transitory memory 18 and executed by a processor 16 .
- Each of the components can be in a communicative relationship with one or more of the other components, the processor 16 , and/or the non-transitory memory 18 (e.g., via a direct or indirect electrical, electromagnetic, optical, or other type of wired or wireless communication) such that an action from the respective component causes an effect on the other component.
- the receiver 12 can be configured to receive a data (D) input.
- the data (D) input can correspond to dMRI images using a d-PFG diffusion sequence.
- the data (D) input can include raw signals obtained from or generated by the dMRI modality (e.g., including noise or other contaminant).
- the raw signals of the data (D) input can include a plurality of dMRI images.
- the dMRI images can include a d-PFG diffusion sequence.
- the d-PFG diffusion sequence can have two blocks of diffusion gradients.
- An example d-PFG diffusion sequence 20 is shown in FIG. 2 .
- the example d-PFG diffusion sequence 20 can correspond to a single spin echo sequence having a 180° refocusing pulse at half the echo time (TE).
- a first block of diffusion sensitizing gradient field pulses can occur prior to the refocusing pulse and a second block can occur after the refocusing pulse.
- the magnitude (g) of the first block of gradient field pulses may differ from the magnitude (g′) of the second block.
- the diffusion wave vectors for the two blocks may also differ, with the concatenation of these two vectors yielding the 6D wave vector ⁇ tilde over (q) ⁇ .
- the diffusion times (t) for the two blocks can be the same.
- the gradient pulse durations ⁇ can be the same.
- the mixing time ⁇ can be the interval from the center of the second lobe of the first block to the center of the first lobe of the second block
- the d-PFG diffusion sequence used to acquire the dMRI images can have a relatively long TE, which can result in a low signal-to-noise ratio. Accordingly, the receiver 12 can perform one or more noise removal procedure to increase the signal to noise ratio in the d-PFG data. Additionally, the data acquisition can be adjusted to keep the image acquisition time to a minimum, while allowing for better signal averaging. For example, the dMRI can include stronger gradients and accelerated acquisitions.
- the data (D) input can reflect 15 or more gradient directions. In other instances, the data (D) input can reflect 18 or more gradient directions. In still other instances, the data (D) input can reflect 21 or more gradient directions.
- the receiver 12 can provide the pre-processed d-PFG data to the magnitude determination unit 14 .
- the magnitude determination unit 14 can determine a magnitude of the data representing the d-PFG diffusion sequence in terms of a six dimensional (6D) diffusional kurtosis (e.g., based on a diffusion displacement probability density function (dPDF)).
- the 6D diffusional kurtosis can encode information provided by the d-PFG diffusion sequence as a second order diffusion weighting (b-value).
- the contributions to the d-PFG diffusion sequence that are second order in the b-value can represent leading diffusion aspects that provide information beyond that which is available from a s-PFG diffusion sequence.
- the magnitude determination unit 14 can output a signal that includes the magnitude (M).
- the d-PFG signal can be input to the 6D unit 32 and the magnitude (M) can be determined by the magnitude unit 34 .
- An example operation of the magnitude determination unit 14 taken with respect to the example d-PFG diffusion sequence of FIG. 2 , is described and derived as follows.
- the d-PFG MRI sequence of FIG. 2 includes a spin echo sequence with a first block of diffusion sensitizing gradients before the 180° refocusing pulse and a second block of diffusion sensitizing gradients after the 180° refocusing pulse.
- the diffusion time for each set of gradients is t, and the pulse durations are ⁇ .
- the interval between the blocks is characterized by a mixing time ⁇ .
- the first block has a gradient magnitude g, while the second block has a gradient magnitude g′.
- the b-values for the first and second blocks are b ⁇ ( ⁇ g) 2 (t ⁇ /3) and b′ ⁇ ( ⁇ g′) 2 (t ⁇ /3), respectively, where ⁇ is the proton gyromagnetic ratio.
- the echo time TE must satisfy the condition TE ⁇ 2t+ ⁇ + ⁇ .
- the 6D unit 32 can let the diffusion gradient direction of the first block be n, and the diffusion gradient direction of the second block be n′.
- n and n′ are standard three-dimensional (3D) vectors normalized to unit magnitude.
- the 3D diffusion wave vectors are then q ⁇ gn/2 ⁇ , for the first block, and q′ ⁇ g′n′/2 ⁇ , for the second block.
- the 6D diffusion wave vector is defined as ⁇ tilde over (q) ⁇ (q,q′) and a corresponding 6D gradient direction vector, determined by the 6D unit 32 , is defined by ⁇ tilde over (q) ⁇ / ⁇ tilde over (q) ⁇ , where ⁇ tilde over (q) ⁇
- 1.
- the gradient magnitudes and directions are completely specified by the 6D direction vector ⁇ and the b-value ⁇ tilde over (b) ⁇ .
- the 6D unit 32 can consider the d-PFG signal magnitude ⁇ tilde over (S) ⁇ ( ⁇ tilde over (b) ⁇ , ⁇ ) obtained with the sequence of FIG. 2 .
- the logarithm of this signal can be expanded in powers of the 6D b-value as:
- Equation ⁇ ⁇ 1 which serves to define the apparent 6D diffusivity, ⁇ tilde over (D) ⁇ app ( ⁇ ), and the apparent 6D diffusional kurtosis, ⁇ tilde over (K) ⁇ app ( ⁇ ), for the direction ⁇ .
- the magnitude unit 34 can use Equation 1 to determine the magnitude of the data representing the d-PFG diffusion sequence as follows.
- the quantity ⁇ tilde over (S) ⁇ 0 ⁇ tilde over (S) ⁇ (0, ⁇ ) is the signal magnitude without diffusion weighting.
- Equation 1 forms the basis of DP-DKI by generalizing to d-PFG sequences the standard DKI relationship between the diffusion weighted signal and the apparent diffusional kurtosis.
- the relevant dPDF is the joint probability density ⁇ tilde over (P) ⁇ (s,s′,t, ⁇ ) of diffusion displacement s over a time interval t followed by a second displacement s′ over a second interval of the same duration, with a mixing time ⁇ separating the end of the first interval from the beginning of the second interval.
- the dPDF can be written as ⁇ tilde over (P) ⁇ ( ⁇ tilde over (s) ⁇ ,t, ⁇ ).
- the average of any function F( ⁇ tilde over (s) ⁇ ) may then be expressed as: F ( ⁇ tilde over ( s ) ⁇ ) ⁇ d 6 ⁇ tilde over (s) ⁇ tilde over (P) ⁇ ( ⁇ tilde over (s) ⁇ ,t , ⁇ ) F ( ⁇ tilde over ( s ) ⁇ ) Equation 2 with the angle brackets being introduced as a shorthand for averaging over the dPDF.
- the 6D diffusivity for a direction ⁇ is given by:
- Equation 5 applies for all diffusion times and mixing times and a possible dependence of D app (n) and K app (n) on these parameters is implicit.
- D app (n) and K app (n) for water diffusion in open geometries such as the brain, depend only weakly on the pulse duration. It is probable that the same holds true for ⁇ tilde over (D) ⁇ app ( ⁇ ) and ⁇ tilde over (K) ⁇ app ( ⁇ ) so that: ⁇ tilde over ( D ) ⁇ app ( ⁇ tilde over ( n ) ⁇ ) ⁇ tilde over ( D ) ⁇ ( ⁇ tilde over ( n ) ⁇ ) and ⁇ tilde over ( K ) ⁇ app ( ⁇ tilde over ( n ) ⁇ ) ⁇ tilde over ( K ) ⁇ ( ⁇ tilde over ( n ) ⁇ ). Equation 6
- the 6D diffusion tensor, ⁇ tilde over (D) ⁇ can be defined by its components:
- the magnitude unit 34 can use ⁇ tilde over (D) ⁇ and/or ⁇ tilde over (W) ⁇ to determine the magnitude of the data representing the d-PFG diffusion sequence.
- ⁇ tilde over (D) ⁇ can be expressed in terms of the conventional 3D diffusion tensor D. Specifically:
- Equation ⁇ ⁇ 15 Equation ⁇ ⁇ 15
- the dependence of ⁇ tilde over (D) ⁇ on the mixing time ⁇ is entirely through the off-diagonal blocks C, which vanish when D is independent of the diffusion time t.
- D is the 3D MD.
- the estimation of the full 6D kurtosis tensor from d-PFG data by the magnitude unit 34 requires at least 66 diffusion directions. While this is feasible, a simpler data acquisition scheme can be applied for estimating the mean of ⁇ tilde over (W) ⁇ , by extending to 6D for standard DKI.
- the mean for W is defined by:
- Equations 17 and 18 are both taken over all directions, in 3D and 6D, respectively.
- the ⁇ 3 in the normalization factor of Equation 18 is the surface area of a 6D hypersphere of unit radius, just as the 4 ⁇ in the normalization factor of Equation 17 is the surface area of a 3D sphere of unit radius. Performing the integrals in Equations 17 and 18 yields:
- W is strongly correlated with and approximately equal to the more commonly used mean kurtosis (MK) metric. Moreover, W can be estimated with only 9 diffusion directions, leading to a highly efficient imaging protocol. Generalizing this method to 6D results in a DP-DKI protocol with 21 directions that is sufficient for estimating ⁇ tilde over (W) ⁇ .
- Equation 21 For example, consider the set of 21 6D directions, ⁇ m , listed in Table 1. It will be understood that 6D directions other than those shown in Table 1 can be used. Using the 6D directions listed in Table 1, A m ( ⁇ tilde over ( b ) ⁇ ) ⁇ ln [ ⁇ tilde over ( S ) ⁇ ( ⁇ tilde over (b) ⁇ ; ⁇ m )], Equation 21 can be defined.
- ⁇ ⁇ ( b ⁇ ) ln ⁇ ( S ⁇ 0 ) - b ⁇ ⁇ D _ + 1 6 ⁇ b ⁇ 2 ⁇ D _ 2 ⁇ W _ + O ⁇ ( b ⁇ 3 ) , Equation ⁇ ⁇ 24 so that D and W can be estimated from a quadratic fit to ⁇ as a function of ⁇ tilde over (b) ⁇ . Extending the analysis to ⁇ tilde over ( ⁇ ) ⁇ yields
- Equation ⁇ ⁇ 25 which shows how the magnitude unit 34 can estimate ⁇ tilde over (D) ⁇ and ⁇ tilde over (W) ⁇ .
- This approach avoids the need to explicitly evaluate either the diffusion or kurtosis tensors.
- the magnitude determination unit can receive a d-PFG diffusion sequence that includes a multiple Gaussian compartment model without inter-compartmental water exchange.
- the magnitude unit 34 can find:
- K ⁇ ⁇ ( n ⁇ ) 3 ⁇ ⁇ 2 ⁇ D ⁇ ⁇ ( n ⁇ ) [ D ⁇ ⁇ ( n ⁇ ) ] 2 , Equation ⁇ ⁇ 26
- ⁇ 2 ⁇ tilde over (D) ⁇ ( ⁇ ) is the variance for the distribution of compartmental diffusivities in the direction ⁇ .
- the 6D kurtosis in a direction ⁇ is 3 times the squared coefficient of variation for the 6D compartmental diffusivities.
- both W and ⁇ tilde over (W) ⁇ are independent of the mixing time ⁇ .
- W this is a general property.
- ⁇ tilde over (W) ⁇ may depend on ⁇ through its components that have some indices between 1 and 3 and others between 4 and 6 (e.g., ⁇ tilde over (W) ⁇ 1246 ). These components can depend on ⁇ , because they link the first and second diffusion blocks.
- W is strictly independent of ⁇
- ⁇ tilde over (W) ⁇ could change if the mixing time were altered.
- a difference between W and ⁇ tilde over (W) ⁇ might therefore reflect water exchange effects as well as microscopic anisotropy, particularly for mixing times long in comparison to inter-compartmental exchange times.
- Another aspect of the present disclosure can include methods that can perform double pulsed diffusional kurtosis imaging (DP-DKI).
- An example of a method 40 that can perform DP-DKI is shown in FIG. 4 .
- Another example of a method 50 that can diagnose a medical condition in a subject based on the identification of the FA is shown in FIG. 5 .
- FIGS. 4 and 5 are illustrated as process flow diagrams with flowchart illustrations.
- the methods 40 and 50 are shown and described as being executed serially; however, it is to be understood and appreciated that the present disclosure is not limited by the illustrated order as some steps could occur in different orders and/or concurrently with other steps shown and described herein. Moreover, not all illustrated aspects may be required to implement the methods 40 and 50 .
- One or more blocks of the respective flowchart illustrations, and combinations of blocks in the block flowchart illustrations, can be implemented by computer program instructions.
- These computer program instructions can be stored in memory and provided to a processor of a general purpose computer, special purpose computer, and/or other programmable data processing apparatus to produce a machine, such that the instructions, which execute via the processor of the computer and/or other programmable data processing apparatus, create mechanisms for implementing the steps/acts specified in the flowchart blocks and/or the associated description.
- the steps/acts can be implemented by a system comprising a processor that can access the computer-executable instructions that are stored in a non-transitory memory.
- the methods 40 and 50 of the present disclosure may be embodied in hardware and/or in software (including firmware, resident software, micro-code, etc.). Furthermore, aspects of the present disclosure may take the form of a computer program product on a computer-usable or computer-readable storage medium having computer-usable or computer-readable program code embodied in the medium for use by or in connection with an instruction execution system.
- a computer-usable or computer-readable medium may be any non-transitory medium that can contain or store the program for use by or in connection with the instruction or execution of a system, apparatus, or device.
- an aspect of the present disclosure can include a method 40 for performing DP-DKI.
- a subject can undergo a dMRI imaging study where an image can be obtained of an anatomical structure.
- the anatomical structure can include at least a portion of the subject's brain.
- Image data can be received, at 42 (e.g., by receiver 12 ).
- the image data can be acquired using a double pulsed field gradient (d-PFG) imaging sequence.
- d-PFG double pulsed field gradient
- the image data can reflect 15 or more gradient directions.
- the image data can reflect 18 or more gradient directions.
- the image data can reflect 21 or more gradient directions.
- a six dimensional (6D) diffusional kurtosis can be determined for the image data (e.g., by 6D unit 32 of the magnitude determination unit 14 ).
- a magnitude of the image data e.g., by the magnitude unit 34 of the magnitude determination unit 14
- the 6D diffusional kurtosis can encode information provided by the d-PFG diffusion sequence as a second order diffusion weighting (b-value).
- the magnitude of the image data can reflect leading diffusion aspects that provide information beyond that which is available from image data recorded with a s-PFG diffusion sequence.
- another aspect of the present disclosure can include a method 50 for diagnosing a medical condition of a subject.
- the medical condition can be a neurological disease and/or a neuro-degenerative disease.
- neurological diseases and neuro-degenerative diseases can include stroke, Alzheimer's disease, head trauma, schizophrenia, attention deficit hyperactivity disorder, etc.
- Steps 52 - 54 are similar to steps 42 - 46 of the method 40 illustrated in FIG. 4 .
- image data acquired using a d-PFG diffusion sequence can be received (e.g., by receiver 12 ), and at 54 , a magnitude of the image data can be determined (e.g., by magnitude determination unit 14 ) in terms of 6D diffusional kurtosis.
- a medical condition can be diagnosed based on the magnitude of the image data.
- the diagnosis can be based on a medical standard and/or a comparison to a stored historical data.
- the diagnosis can be based on a display of the magnitude of the image data (e.g., an MRI image of the patient's brain with color corresponding to the diffusion).
- the medical condition which can be already diagnosed, can be evaluated based on the magnitude of the image data. For example, a progress or stage of the medical condition can be evaluated based on the magnitude.
- This example illustrates an approach that extends the diffusional kurtosis imaging (DKI) formalism to double pulsed field gradient (d-PFG) diffusion sequences that thereby quantifies the associated non-Gaussian diffusion effects as double pulsed DKI (DP-DKI).
- DKI diffusional kurtosis imaging
- d-PFG double pulsed field gradient diffusion sequences that thereby quantifies the associated non-Gaussian diffusion effects as double pulsed DKI
- mice Two male C57BL/6 mice (20-25 g) were imaged. All experimental procedures were approved by the Institutional Animal Care and Use Committee of the Medical University of South Carolina. Animals were initially anesthetized with 3% isoflurane and were maintained at 1.5% during MRI experiments. Rectal temperature was maintained at 36.8° C. using air circulation (SA Instruments, Stony Brook, N.Y.) throughout the experiments. Respiratory rate was monitored using a MRI-compatible system (SA Instruments, Stony Brook, N.Y.). All recorded parameters were maintained within normal physiologic ranges.
- the DP-DKI data was analyzed with the help of Equations 24 and 25, with D , ⁇ tilde over (D) ⁇ , W , and ⁇ tilde over (W) ⁇ being estimated from fits to these quadratic functions of the b-value.
- the coefficients for the fits were determined by using linear least squares.
- the standard DKI data was processed with freely available in-house software, Diffusional Kurtosis Estimator, available at http://www.nitrc.org/projects/dke, and included calculation of parametric maps for the mean diffusivity (MD), mean kurtosis (MK), and fractional anisotropy (FA).
- D and W as calculated with Equation 24, utilize only the first 9 directions listed in Table 1. For this subset of directions, the amplitudes of the second block of diffusion gradients are zero. As a consequence, one could regard these as s-PFG measurements, even though the data were obtained with a nominal d-PFG sequence.
- Region of interest results for D , ⁇ tilde over (D) ⁇ , W , and ⁇ tilde over (W) ⁇ are plotted in FIG. 7 for the two mice. Fits to Equations 24 and 25 were performed on a voxel-by-voxel basis, and mean values were obtained by averaging over the regions. The error bars indicate standard deviations. Notice that there is little difference between D and ⁇ tilde over (D) ⁇ , consistent with Equation 16. In contrast, ⁇ tilde over (W) ⁇ is substantially lower than W , suggesting appreciable microscopic diffusional anisotropy. In all cases, the differences between W and ⁇ tilde over (W) ⁇ are highly statistically significant (t-test, p ⁇ 0.0001). The regions of interest for the cortex had 510 and 490 voxels, while the regions of interest for the external capsule had 50 and 78 voxels.
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Abstract
Description
which serves to define the apparent 6D diffusivity, {tilde over (D)}app(ñ), and the apparent 6D diffusional kurtosis, {tilde over (K)}app(ñ), for the direction ñ. The
F({tilde over (s)})≡∫d 6 {tilde over (s)}{tilde over (P)}({tilde over (s)},t,τ)F({tilde over (s)})
with the angle brackets being introduced as a shorthand for averaging over the dPDF. The 6D diffusivity for a direction ñ is given by:
while the corresponding 6D diffusional kurtosis is given by
{tilde over (D)} app({tilde over (n)})→{tilde over (D)}({tilde over (n)}) and {tilde over (K)} app({tilde over (n)})→{tilde over (K)}({tilde over (n)})
{tilde over (D)}app({tilde over (n)})≈{tilde over (D)}({tilde over (n)}) and {tilde over (K)}app({tilde over (n)})≈{tilde over (K)}({tilde over (n)}). Equation 6
where the indices (α,β) run from 1 to 6. (Greek subscripts are used for 6D indices to distinguish them from 3D indices, for Latin subscripts are used.) {tilde over (D)} has a total of 36 components and is symmetric with respect to an interchange of the component indices, so that {tilde over (D)}αβ={tilde over (D)}βα. As a consequence of time reversal invariance, D has the additional property:
{tilde over (D)}αβ={tilde over (D)}α′β′,
where:
α′=(α+3)mod 6 and β′=(β+3)mod 6.
The combination of the two symmetries implies that {tilde over (D)} has only 12 independent components.
which is a direct extension of the definition for the 3D kurtosis tensor. While {tilde over (W)} has a total of 1296 components, symmetry with respect to interchange of component indices plus time reversal invariance imply that the number of independent components is 66. Time reversal invariance for {tilde over (W)} can be expressed as {tilde over (W)}αβγδ={tilde over (W)}α′β′γ′δ′, where γ′ and δ′ are defined in analogy with α′ and β′.
where ñα represents the components of the direction vector ñ and {tilde over (
Thus, {tilde over (D)} and {tilde over (W)} fully characterize the 6D diffusivity and kurtosis. Accordingly, the
Thus, only the 6D kurtosis tensor {tilde over (W)} can provide information that is not accessible with s-PFG MRI. Note that the dependence of {tilde over (D)} on the mixing time τ is entirely through the off-diagonal blocks C, which vanish when D is independent of the diffusion time t. Moreover, from Equation 15, it is evident that C(t,0)=D(2t)−D(t), and since D generally approaches a constant for long diffusion times, that C(t,∞)=0.
where
where ni the components of a 3D direction vector, while the mean for {tilde over (W)} is defined by:
| TABLE 1 |
| 6D diffusion gradient directions that can be used to measure . |
| m | ñm |
| 1 | (1, 0, 0, 0, 0, 0) |
| 2 | (0, 1, 0, 0, 0, 0) |
| 3 | (0, 0, 1, 0, 0, 0) |
| 4 | (1, 1, 0, 0, 0, 0)/{square root over (2)} |
| 5 | (1, −1, 0, 0, 0, 0)/{square root over (2)} |
| 6 | (1, 0, 1, 0, 0, 0)/{square root over (2)} |
| 7 | (1, 0, −1, 0, 0, 0)/{square root over (2)} |
| 8 | (0, 1, 1, 0, 0, 0)/{square root over (2)} |
| 9 | (0, 1, −1, 0, 0, 0)/{square root over (2)} |
| 10 | (1, 0, 0, 0, 1, 0)/{square root over (2)} |
| 11 | (1, 0, 0, 0, −1, 0)/{square root over (2)} |
| 12 | (1, 0, 0, 0, 0, 1)/{square root over (2)} |
| 13 | (1, 0, 0, 0, 0, −1)/{square root over (2)} |
| 14 | (0, 1, 0, 0, 0, 1)/{square root over (2)} |
| 15 | (0, 1, 0, 0, 0, −1)/{square root over (2)} |
| 16 | (1, 0, 0, 1, 0, 0)/{square root over (2)} |
| 17 | (1, 0, 0, −1, 0, 0)/{square root over (2)} |
| 18 | (0, 1, 0, 0, 1, 0)/{square root over (2)} |
| 19 | (0, 1, 0, 0, −1, 0)/{square root over (2)} |
| 20 | (0, 0, 1, 0, 0, 1)/{square root over (2)} |
| 21 | (0, 0, 1, 0, 0, −1)/{square root over (2)} |
A m({tilde over (b)})≡ln [{tilde over (S)}({tilde over (b)};ñ m)], Equation 21
can be defined.
so that
which shows how the
where δ2{tilde over (D)}(ñ) is the variance for the distribution of compartmental diffusivities in the direction ñ. Thus, the 6D kurtosis in a direction ñ is 3 times the squared coefficient of variation for the 6D compartmental diffusivities. Further:
Claims (20)
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| US20110052029A1 (en) | 2009-08-27 | 2011-03-03 | David Connah | Method and system for generating accented image data |
| US20120002851A1 (en) * | 2008-08-07 | 2012-01-05 | New York University | System, Method and Computer Accessible Medium for Providing Real-Time Diffusional Kurtosis Imaging and for Facilitating Estimation of Tensors and Tensor- Derived Measures in Diffusional Kurtosis Imaging |
| US20140184220A1 (en) * | 2013-01-03 | 2014-07-03 | Schlumberger Technology Corporation | Method for nuclear magnetic resonance diffusion measurements |
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| US20100033182A1 (en) | 2008-08-11 | 2010-02-11 | The United States Of America As Represented By The Secretary, Department Of Health And Human Service | Magnetic resonance specimen evaluation using multiple pulsed field gradient sequences |
| US20110052029A1 (en) | 2009-08-27 | 2011-03-03 | David Connah | Method and system for generating accented image data |
| US20140184220A1 (en) * | 2013-01-03 | 2014-07-03 | Schlumberger Technology Corporation | Method for nuclear magnetic resonance diffusion measurements |
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| Title |
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| International Search Report for PCT/US15/15185, dated May 20, 2015, pp. 1-10. |
| Poot, Dirk HJ, et al. "Optimal experimental design for diffusion kurtosis imaging." Medical Imaging, IEEE Transactions 29.3 (2010): 819-829. |
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