US6573247B1 - Anti-viral pyrimidine nucleoside analogues - Google Patents

Anti-viral pyrimidine nucleoside analogues Download PDF

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US6573247B1
US6573247B1 US09/403,853 US40385300A US6573247B1 US 6573247 B1 US6573247 B1 US 6573247B1 US 40385300 A US40385300 A US 40385300A US 6573247 B1 US6573247 B1 US 6573247B1
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alkyl
halogens
aryl
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Christopher McGuigan
Christopher Yarnold
Garry Jones
Jan Balzarini
Erik De Clercq
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Rega Foundation
University College Cardiff Consultants Ltd
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University College Cardiff Consultants Ltd
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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06—Pyrimidine radicals
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A61P31/20—Antivirals for DNA viruses
    • A61P31/22—Antivirals for DNA viruses for herpes viruses
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom

Definitions

  • the present invention relates to a new class of nucleoside analogues and to their therapeutic use in the prophylaxis and treatment of viral infection for example by varicella zoster virus (VZV).
  • VZV varicella zoster virus
  • Varicella zoster virus is the aetiological agent in chickenpox and shingles which can cause considerable human illness and suffering.
  • JP 62255499 (Teijin Ltd) describes the preparation of fluorescent nucleosides or nucleotides and their use for DNA hybridization probes.
  • the compounds described have the general formula:
  • X 1 and Y 1 are HO[P(O)(OH)O]n
  • Z 1 is H or HO[P(O)(OH)O]m
  • W1 is H or HO
  • R 1 and R 2 are H or C 1 to C 10 alkyl.
  • R can be H or butyl.
  • R is selected from the group comprising C 5 to C 20 alkyl, C 5 to C 20 cycloalkyl, halogens, aryl and alkylaryl;
  • R′ is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arylthiol, and aryl;
  • R′′ is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy and aryl;
  • Q is selected from the group comprising O, S and CY 2 , where Y may be the same or different and is selected from H, alkyl and halogens;
  • X is selected from the group comprising O, NH, S, N-alkyl, (CH 2 ) n where n is 1 to 10, and CY 2 where Y may be the same or different and is selected from hydrogen, alkyl and halogens;
  • Z is selected from the group comprising O, S, NH and N-alkyl
  • U′′ is H and U′ is selected from H and CH 2 T, or U′ and U′′ are joined so as to provide a ring moiety including Q wherein
  • U′-U′′ together is respectively selected from the group comprising —CTH—CT′T′′— and —CT′ ⁇ CT′—, so as to provide ring moieties selected from the group comprising
  • T is selected from the group comprising OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH 2 and N 3 ;
  • T′ is selected from the group comprising H and halogens and where more than one T′ is present they may be the same or different;
  • T′′ is selected from the group comprising H and halogens
  • W is selected from the group comprising H, a phosphate group and a phosphonate group.
  • the present invention extends to compounds according to formula I wherein the group W is modified to any pharmacologically acceptable salt or derivative of —H, phosphates or phosphonates.
  • the present invention also includes any compound which is a pro-drug of the compound according to formula I, any such pro-drug being provided by modification of the moiety W, wherein W is selected from phosphates and derivatives thereof, and phosphonates and derivatives thereof.
  • R, R′ and R′′ may be substituted or unsubstituted and may be branched or unbranched.
  • R, R′ and R′′ are alkyl or cycloalkyl they may be saturated or unsaturated.
  • R may contain aryl or heteroaryl groups which may vary in nature, position or number.
  • a preferred position is the terminus position in R.
  • suitable substituents include OH, halogens, amino, CN, CHOH, CO 2 alkyl, CONH 2 , CONHalkyl, SH, S-alkyl and NO 2 , wherein alkyl is suitably C 1 to C 5 .
  • any substituent in R when R is alkyl or cycloalkyl is non-polar, more suitably any such substituent is additionally hydrophobic.
  • R is an alkyl group. More preferably R is a C 7 to C 20 alkyl group, which may optionally carry substituents such as halogens. Even more preferably R is a C 8 to C 14 group, particularly preferred is R being straight chain C 10 H 21 .
  • R When R is aryl or alkylaryl it can be substituted.
  • Alkylaryl can be aryl with one or more C 1 to C 10 groups attached which themselves can be substituted or unsubstituted.
  • Aryl groups can include benzyl groups and heterosubstituted 5, 6 or 7 numbered rings. Either an aryl or an alkyl portion of an alkylaryl group can be attached to the ring structure.
  • R can, optionally substituted as above, for example be —(CH 2 ) n -aryl-(CH 2 ) m H, where n and m are each more than 1 and n+m ⁇ 10 and the aryl is preferably C 6 H 4 .
  • R cannot be any radical equivalent to 4-FC 6 H 5 , C 6 F 5 , 4 MeOC 6 H 5 , 3,5-(CF 3 ) 2 C 6 H 4 , 3,5-F 2 C 6 H 4 , 4-CF 3 C 6 H 5 or C 6 H 5 .
  • R′ is selected from the group comprising C 1 to C 10 alkyl, C 3 to C 10 cycloalkyl, C 1 to C 10 alkylamino, C 1 to C 10 dialkylamino, C 1 to C 10 alkyloxy, C 6 to C 10 aryloxy, C 1 to C 10 alkylthiol, C 6 to C 10 arylthiol and C 6 to C 10 aryl.
  • R′′ is selected from the group comprising C 1 to C 10 alkyl, C 3 to C 10 cycloakyl, C 1 to C 10 alkyloxy, C 6 to C 10 aryloxy and C 6 to C 10 aryl.
  • each of R′ and R′′ is a small alkyl i.e. a C 1 to C 2 alkyl group or H. More preferably each of R′ and R′′ is H.
  • halogen is taken to include any of F, Cl, Br and I.
  • Q is CH 2 , S or O. More preferably Q is O. Where Q is CY 2 and includes a halogen, the halogen is preferably fluorine. Y is preferably H.
  • X is O, S or NH. More preferably X is O. Where X is (CH 2 ) n , n is preferably 1 or 2, most preferably 1. X cannot be NH or N-alkyl when R is an unsubstituted C 5 to C 10 alkyl group, unless Q is other than O. Suitably when X is N-alkyl, alkyl is C 1 to C 5 alkyl and when X is CY 2 at least one Y is C 1 to C 5 alkyl.
  • Z is O.
  • N-alkyl suitably the alkyl is C 1 to C 5 alkyl.
  • U′ and U′′ are joined to provide the saturated ring moiety including T, T′ and T′′.
  • T, T′ and T′′ in such a ring moiety are respectively OH, H and H.
  • T is OH.
  • T is a halogen it is preferably F.
  • each of T′ and T′′ is H.
  • T′ and T′′ is halogen it is preferably fluorine.
  • pro-drug includes the corresponding free base of each of the nucleosides described.
  • the free base may moreover have direct antiviral action not dependent on metabolism to the corresponding nucleoside analogue.
  • phosphate includes diphosphates and triphosphates and “phosphonate” includes diphosphonates and triphosphonates.
  • W includes pharmacologically acceptable salts and derivatives of phosphates, diphosphates and triphosphates and of phosphonates, diphosphonates and triphosphonates. It also includes any moiety which provides a compound which is a pro-drug of the compound according to formula I, wherein W is selected from phosphates, diphosphates and triphosphates and derivatives thereof, and phosphonates, diphosphonates and triphosphonates and derivatives thereof.
  • Each compound may be the pure stereoisomer coupled at each of its chiral centres or it may be inverted at one or more of its chiral centres. It may be a single stereoisomer or a mixture of two or more stereoisomers. If it is a mixture the ratio may or may not be equimolar.
  • the compound is a single stereoisomer.
  • the compound may be in either enantiomeric form i.e. it may be either the D or L enantiomer either as a single stereoisomer or as a mixture of the two enantiomers. More preferably the compound has a stereochemistry resembling natural deoxy nucleosides derived from ⁇ -D-2-deoxyribose. However other enantiomers particularly the L enantiomers may be employed.
  • a compound embodying the present invention is in a sugar form as for example modified and derived from a D-xylo sugar system.
  • a 5-halo nucleoside analogue is contacted with a terminal alkyne in the presence of a catalyst.
  • 5-alkynyl nucleoside can be cyclised in the presence of a catalyst.
  • the catalyst is a copper catalyst.
  • the 5-alkynyl nucleoside has the general formula:
  • Compounds embodying the present invention can show anti-viral activity.
  • compounds embodying the present invention can show antiviral activity against for example varicella zoster virus and/or cytomegalovirus.
  • a compound according to the present invention for use in a method of treatment, suitably in the prophylaxis or treatment of a viral infection.
  • R can be C 7 to C 20 alkyl.
  • a compound according to the present invention in the manufacture of a medicament for the prophylaxis or treatment of viral infection.
  • R can be C 7 to C 20 alkyl.
  • a method of prophylaxis or treatment of viral infection comprising administration to a patient in need of such treatment an effective dose of a compound according to the present invention.
  • R can be C 7 to C 20 alkyl.
  • a compound of the present invention in the manufacture of a medicament for use in the prophylaxis or treatment of a viral infection, particularly an infection with the varicella zoster virus or an infection with cytomegalovirus.
  • R can be C 7 to C 20 alkyl.
  • R can be aryl or alkylaryl, without the exclusion of R not being a radical equivalent to 4-FC 6 H 5 , C 6 H 5 , 4-MeOC 6 H 5 , 3,5(CF 3 ) 2 C 6 H 4 , 3,5,-F 2 C 6 H 4 , 4-CF 3 C 6 H 5 or C 6 H 5 .
  • a pharmaceutical composition comprising a compound of the present invention in combination with a pharmaceutically acceptable excipient.
  • R can be C 7 to C 20 alkyl.
  • a method of preparing a pharmaceutical composition comprising the step of combining a compound of the present invention with a pharmaceutically acceptable excipient.
  • R can be C 7 to C 20 alkyl.
  • the medicaments employed in the present invention can by administered by oral or parenteral routes, including intravenous, intramuscular, intraperitoneal, subcutaneous, transdermal, airway (aerosol), rectal, vaginal and topical (including buccal and sublingual) administration.
  • oral or parenteral routes including intravenous, intramuscular, intraperitoneal, subcutaneous, transdermal, airway (aerosol), rectal, vaginal and topical (including buccal and sublingual) administration.
  • the compounds of the invention will generally be provided in the form of tablets or capsules, as a powder or granules, or as an aqueous solution or suspension.
  • Tablets for oral use may include the active ingredient mixed with pharmaceutically acceptable excipients such as inert diluents, disintegrating agents, binding agents, lubricating agents, sweetening agents, flavouring agents, colouring agents and preservatives.
  • suitable inert diluents include sodium and calcium carbonate, sodium and calcium phosphate, and lactose, while corn starch and alginic acid are suitable disintegrating agents.
  • Binding agents may include starch and gelatin, while the lubricating agent, if present, will generally be magnesium stearate, stearic acid or talc.
  • the tablets may be coated with a material such as glyceryl monostearate or glyceryl distearate, to delay absorption in the gastrointestinal tract.
  • Capsules for oral use include hard gelatin capsules in which the active ingredient is mixed with a solid diluent, and soft gelatin capsules wherein the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin or olive oil.
  • Formulations for rectal administration may be presented as a suppository with a suitable base comprising for example cocoa butter or a salicylate.
  • Formulations suitable for vaginal administration may be presented as pessaries, tampons, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
  • the compounds of the invention will generally be provided in sterile aqueous solutions or suspensions, buffered to an appropriate pH and isotonicity.
  • Suitable aqueous vehicles include Ringer's solution and isotonic sodium chloride.
  • Aqueous suspensions according to the invention may include suspending agents such as cellulose derivatives, sodium alginate, polyvinyl-pyrrolidone and gum tragacanth, and a wetting agent such as lecithin.
  • Suitable preservatives for aqueous suspensions include ethyl and n-propyl p-hydroxybenzoate.
  • the compounds of the invention may also be presented as liposome formulations.
  • a suitable dose will be in the range of 0.1 to 300 mg per kilogram body weight of the recipient per day, preferably in the range of 1 to 25 mg per kilogram body weight per day and most preferably in the range 5 to 10 mg per kilogram body weight per day.
  • the desired dose is preferably presented as two, three, four, five or six or more sub-doses administered at appropriate intervals throughout the day. These sub-doses may be administered in unit dosage forms, for example, containing 10 to 1500 mg, preferably 20 to 1000 mg, and most preferably 50 to 700 mg of active ingredient per unit dosage form.
  • 3-(2′-Deoxy- ⁇ -D-ribofuranosyl)-6-octyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one has the structure and is numbered as follows:
  • Examples 1 to 6 each embody the present invention and illustrate the effect of chain length in the alkyl group R.
  • each compound had the following components X ⁇ O, Z ⁇ O Q ⁇ O, W ⁇ H, R′′ ⁇ R′ ⁇ H, T ⁇ OH and T′ ⁇ T′′ ⁇ H.
  • reaction mixture was stirred at room temperature for 19 hours, after which time thin layer chromatography (ethyl acetate/methanol (95:5)) of the reaction mixture showed complete conversion of the starting material.
  • Copper (I) iodide 80 mg, 0.40 mmol
  • triethylamine 15 ml
  • the reaction mixture was then concentrated in vacuo and the resulting residue was dissolved in dichloromethane/methanol (1:1) (8 ml) and an excess of Amberlite IRA-400 (HCO 3 ⁇ form) was added and the mixture was stirred for 30 minutes.
  • the resin was then filtered, washed with methanol and the combined filtrate was evaporated to dryness.
  • the crude product was initially triturated with acetone and then purified by silica gel column chromatography using an initial eluent of dichloromethane/methanol (95:5), followed by an eluent of dichloromethane/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo to yield the product as a cream solid (196 mg, 26%). Trituration of the product with petroleum ether yielded the pure product as a fine white solid (176 mg, 23%).
  • VZV varicella zoster virus
  • Each of the compounds embodying the present invention shows anti-viral activity greater than or comparable with acyclovir showing increasing efficacy along the series C5 to C10.
  • Examples 7, 8 and 9 demonstrate the preparation of compounds having a substituted R alkyl group and their efficacy as anti-viral agents.
  • the alkyl group is nC9 and the substituent is terminal.
  • X is O
  • Z is O
  • R′ and R′′ are each H
  • Q is O
  • W is H
  • T is OH
  • T′ and T′′ is H.
  • Example 8 The product of Example 8 was additionally tested in vitro in tissue culture assays for potent antiviral action with respect to cytomegalovirus (CMV).
  • CMV induced cytopatho-genicity in human embryonic lung fibroblast (HEL) cells was measured post infection.
  • EC 50 and CC 50 were defined as above for VZV.
  • the equivalent data for the known CMV active agent dihydroxypropyl guanine (DHPG) is included in Table IV as a control. The results are given in Table IV below.
  • Example 8 The product of Example 8 with R equal to —C 9 H 18 Cl shows antiviral activity with respect to CMV comparable to DHPG.
  • Examples 9 and 10 are both comparative Examples. They are each equivalent to the compounds of Examples 1 to 8 with the exception that the R group is respectively —C 3 H 6 OH and —C 4 H 8 OH.
  • Example 9 and 10 were each tested in vitro in tissue culture assays for potent anti viral action with respect to Varicella zoster virus (VZV).
  • VZV Varicella zoster virus
  • the values of EC 50 and CC 50 were measured as above.
  • the results are given in Table V below and include those for acyclovir as control.
  • Example 9 Neither the product of Example 9 nor the product of Example 10 demonstrated useful VZV antiviral activity having regard to the control.
  • the low activity is attributed to the short alkyl chain length.
  • the present example investigated the effect of altering Q in the above general formula to sulphur.
  • the compound was prepared by reactions analogous to Example 2, using 4′-thio nucleoside.
  • VZV varicella zoster virus
  • the product of example 16 shows extremely potent antiviral activity with respect to varicella zoster virus.
  • Examples 12 to 15 in accordance with the above general formula Z ⁇ O, Q ⁇ O, W ⁇ H, T ⁇ OH, T′ ⁇ T′′ ⁇ H, R′ ⁇ R′′ ⁇ H and R is respectively —C 6 H 11 , —C 8 H 17 and —C 12 H 25 .
  • the above compound was prepared by a method analogous to that described under Examples 12 and 13 above.
  • the compound was prepared by reactions analogous to Example 13 using 4′ thionucleoside.

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Abstract

A compound having formula (I), wherein R is selected from the group comprising C5 to C20 alkyl, C5 to C20 cycloalkyl, halogens, aryl and alkylaryl; R' is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arythiol, alkyl; R'' is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy and aryl; Q is selected from the group comprising O, S and CY2, where Y may be the same or different and is selected from H, alkyl and halogens; X is selected from the group comprising O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2 where Y may be the same or different and is selected from hydrogen, alkyl and halogens; Z is selected from the group comprising O, S, NH, and N alkyl; U'' is H and U' is selected from H and CH2T, or U' and U'' are joined so as to form a ring moiety including Q wherein U'-U'' together is respectively selected from the group comprising -CTH-CT'T''- and -CT=CT- and -CT'=CT'-, so as to provide ring moieties selected from the group comprising formula (II) and (III) wherein T is selected from the group comprising OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2 and N3; T' is selected from the group comprising H and halogens and where more than one T' is present they may be the same or different; T'' is selected from the group comprising H and halogens, and W is selected from the group comprising H, a phosphate group and a pharmacologically acceptable salt, derivative or prodrug thereof shows potent anti-viral activity against, for example, varicella zoster virus and cytomegalovirus.

Description

This application is a national stage application filed under 35 U.S.C. §371 of PCT International Application No. PCT/GB98/01222 filed on Apr. 27, 1998.
The present invention relates to a new class of nucleoside analogues and to their therapeutic use in the prophylaxis and treatment of viral infection for example by varicella zoster virus (VZV). Varicella zoster virus is the aetiological agent in chickenpox and shingles which can cause considerable human illness and suffering.
There has been considerable interest in the development of 5-substituted pyrimidine deoxynucleosides as putative antiviral agents.
Tetrahedron Letters, 22, 421, 1981, M. J. Robins and P. J. Barr describes a method of coupling terminal alkynes with protected 5-iodouracil nucleotides in the presence of a catalyst to give the corresponding 5-(alkyn-1-yl) uracil nucleosides.
J. Med. Chem. 26, 661, 1983, E. de Clercq, J. Descamps, J. Balzarini, J. Giziewicz, P. J. Barr and M. J. Robins describes a catalytic process for coupling terminal alkynes with 5-iodo-1-(2,3,5,-tri-O-p-toluyl-β-D-arabinofuranosyl)uracil and 5-iodo-3′,5′-di-O-p-toluyl-2′-deoxyuridine. A cyclized by-product having methyl substituted at the 6-position was isolated and characterised spectroscopically.
J. Org. Chem. 48, 1854, 1983, M. J. Robins and P. J. Barr describes catalytic coupling of terminal alkynes with 5-iodo-1-methyluracil and 5-iodouracil nucleotides protected as their p-toluyl esters. The article also describes the conversion of 5-hexynyl-2′-deoxyuridine to cyclized 6-n-butyl-3-(2-deoxy-β-D-erythro-pentofuraosyl)furano[2,3-d]pyrimidin-2-one.
Tetrahedron Letters 29, 5221, 1988, K. A. Cruickshank and D. L. Stockwell describes the catalytic condensation of 5′-dimethoxytrityl-5-iodo-2′-deoxyuridine with N-trifluoroacetyproparglyamine and subsequent conversion to the 3′-phosphoramidite.
J. Heterocyclic Chem. 28, 1917, 1991, R. Kumar, E. E. Knaus and L. I. Wiebe describes a reaction employing 5-(1-fluoro-2-bromoethyl)-3′,5′-di-O-acetyl-2′-deoxyuridine and producing a compound having the formula:
Figure US06573247-20030603-C00002
J. Org. Chem. 1993, 58, 6614, G. T. Crisp and B. L. Flynn describes palladium catalysed couplings of terminal alkynes with a variety of oxyuridines. One coupling described is that between 5-ethynyl-2′-deoxyuridine and a range of fluorinated aryl compounds.
Nucleic Acids Research 1996, 24, 2470, J. Woo, R. B. Meyer and H. B. Gamper describes a process for the preparation of 3-(2′-deoxy-β-D-ribofuranosyl)-pyrrolo-[2,3-d]-pyrimidine-2(3H)-one.
Can. J. Chem. 74, 1609, 1996, R. Kumar, L. I. Wiebe, E. E. Knaus describes a range of deoxyuridine compounds and their various anti-viral activity. A compound of the formula:
Figure US06573247-20030603-C00003
was found to be inactive in the vitro assays against HSV-1, HSV-2, VZV and CMV.
JP 62255499 (Teijin Ltd) describes the preparation of fluorescent nucleosides or nucleotides and their use for DNA hybridization probes. The compounds described have the general formula:
Figure US06573247-20030603-C00004
wherein X1 and Y1 are HO[P(O)(OH)O]n, Z1 is H or HO[P(O)(OH)O]m, with m and n=0 to 3, W1 is H or HO and R1 and R2 are H or C1 to C10 alkyl.
Nippon Kagaku Kaishi 7, 1214, 1987 describes the synthesis of fluorescent dodecadeoxy ribonucleotides having the general formula:
Figure US06573247-20030603-C00005
where R can be H or butyl.
It is an object of the present invention to provide a novel class of nucleoside analogues.
It is a further object of the present invention to provide a novel class of nucleoside analogues for therapeutic use in the prophylaxis and treatment of viral infection for example by varicella zoster virus.
According to a first aspect of the present invention there is provided a compound having formula I as follows:
Figure US06573247-20030603-C00006
wherein
R is selected from the group comprising C5 to C20 alkyl, C5 to C20 cycloalkyl, halogens, aryl and alkylaryl;
R′ is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arylthiol, and aryl;
R″ is selected from the group comprising hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy and aryl;
Q is selected from the group comprising O, S and CY2, where Y may be the same or different and is selected from H, alkyl and halogens;
X is selected from the group comprising O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2 where Y may be the same or different and is selected from hydrogen, alkyl and halogens;
Z is selected from the group comprising O, S, NH and N-alkyl;
U″ is H and U′ is selected from H and CH2T, or U′ and U″ are joined so as to provide a ring moiety including Q wherein
U′-U″ together is respectively selected from the group comprising —CTH—CT′T″— and —CT′═CT′—, so as to provide ring moieties selected from the group comprising
Figure US06573247-20030603-C00007
 wherein
T is selected from the group comprising OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2 and N3;
T′ is selected from the group comprising H and halogens and where more than one T′ is present they may be the same or different;
T″ is selected from the group comprising H and halogens; and
W is selected from the group comprising H, a phosphate group and a phosphonate group.
It is to be understood that the present invention extends to compounds according to formula I wherein the group W is modified to any pharmacologically acceptable salt or derivative of —H, phosphates or phosphonates. The present invention also includes any compound which is a pro-drug of the compound according to formula I, any such pro-drug being provided by modification of the moiety W, wherein W is selected from phosphates and derivatives thereof, and phosphonates and derivatives thereof.
Each of R, R′ and R″ may be substituted or unsubstituted and may be branched or unbranched. When any of R, R′ and R″ are alkyl or cycloalkyl they may be saturated or unsaturated. The nature, position and number of any substituents and unsaturation present may be varied. R may contain aryl or heteroaryl groups which may vary in nature, position or number. A preferred position is the terminus position in R. Examples of suitable substituents include OH, halogens, amino, CN, CHOH, CO2alkyl, CONH2, CONHalkyl, SH, S-alkyl and NO2, wherein alkyl is suitably C1 to C5. Suitably any substituent in R when R is alkyl or cycloalkyl is non-polar, more suitably any such substituent is additionally hydrophobic.
Preferably R is an alkyl group. More preferably R is a C7 to C20 alkyl group, which may optionally carry substituents such as halogens. Even more preferably R is a C8 to C14 group, particularly preferred is R being straight chain C10H21.
When R is aryl or alkylaryl it can be substituted. Alkylaryl can be aryl with one or more C1 to C10 groups attached which themselves can be substituted or unsubstituted. Aryl groups can include benzyl groups and heterosubstituted 5, 6 or 7 numbered rings. Either an aryl or an alkyl portion of an alkylaryl group can be attached to the ring structure. If desired R can, optionally substituted as above, for example be —(CH2)n-aryl-(CH2)mH, where n and m are each more than 1 and n+m≦10 and the aryl is preferably C6H4. R cannot be any radical equivalent to 4-FC6H5, C6F5, 4 MeOC6H5, 3,5-(CF3)2C6H4, 3,5-F2C6H4, 4-CF3C6H5 or C6H5.
Suitably R′ is selected from the group comprising C1 to C10 alkyl, C3 to C10 cycloalkyl, C1 to C10 alkylamino, C1 to C10 dialkylamino, C1 to C10 alkyloxy, C6 to C10 aryloxy, C1 to C10 alkylthiol, C6 to C10 arylthiol and C6 to C10 aryl. Suitably R″ is selected from the group comprising C1 to C10 alkyl, C3 to C10 cycloakyl, C1 to C10 alkyloxy, C6 to C10 aryloxy and C6 to C10 aryl.
Preferably each of R′ and R″ is a small alkyl i.e. a C1 to C2 alkyl group or H. More preferably each of R′ and R″ is H.
Throughout the present specification “halogen” is taken to include any of F, Cl, Br and I.
Preferably Q is CH2, S or O. More preferably Q is O. Where Q is CY2 and includes a halogen, the halogen is preferably fluorine. Y is preferably H.
Preferably X is O, S or NH. More preferably X is O. Where X is (CH2)n, n is preferably 1 or 2, most preferably 1. X cannot be NH or N-alkyl when R is an unsubstituted C5 to C10 alkyl group, unless Q is other than O. Suitably when X is N-alkyl, alkyl is C1 to C5 alkyl and when X is CY2 at least one Y is C1 to C5 alkyl.
Preferably Z is O. Where Z is N-alkyl, suitably the alkyl is C1 to C5 alkyl.
Preferably U′ and U″ are joined to provide the saturated ring moiety including T, T′ and T″. Preferably T, T′ and T″ in such a ring moiety are respectively OH, H and H.
Preferably T is OH. When T is a halogen it is preferably F.
Preferably each of T′ and T″ is H. When either or both of T′ and T″ is halogen it is preferably fluorine.
When W is a moiety which renders the compound a pro-drug of the compound according to formula I it is to be understood that the term pro-drug includes the corresponding free base of each of the nucleosides described. The free base may moreover have direct antiviral action not dependent on metabolism to the corresponding nucleoside analogue.
It is also to be understood that “phosphate” includes diphosphates and triphosphates and “phosphonate” includes diphosphonates and triphosphonates. Hence W includes pharmacologically acceptable salts and derivatives of phosphates, diphosphates and triphosphates and of phosphonates, diphosphonates and triphosphonates. It also includes any moiety which provides a compound which is a pro-drug of the compound according to formula I, wherein W is selected from phosphates, diphosphates and triphosphates and derivatives thereof, and phosphonates, diphosphonates and triphosphonates and derivatives thereof.
Each compound may be the pure stereoisomer coupled at each of its chiral centres or it may be inverted at one or more of its chiral centres. It may be a single stereoisomer or a mixture of two or more stereoisomers. If it is a mixture the ratio may or may not be equimolar. Preferably the compound is a single stereoisomer. The compound may be in either enantiomeric form i.e. it may be either the D or L enantiomer either as a single stereoisomer or as a mixture of the two enantiomers. More preferably the compound has a stereochemistry resembling natural deoxy nucleosides derived from β-D-2-deoxyribose. However other enantiomers particularly the L enantiomers may be employed.
It is to be understood that the present invention extends to compounds wherein the sugar moiety and phosphate if present have either together or separately been modified as well known to a person skilled in art.
It is also possible for a compound embodying the present invention to be in a sugar form as for example modified and derived from a D-xylo sugar system.
Particularly preferred compounds embodying the present invention have the following formulas:
Figure US06573247-20030603-C00008
According to a further aspect of the present invention there is provided a method for preparing compounds having Formula I above wherein a 5-halo nucleoside analogue is contacted with a terminal alkyne in the presence of a catalyst. Alternatively 5-alkynyl nucleoside can be cyclised in the presence of a catalyst. Suitably the catalyst is a copper catalyst. The 5-alkynyl nucleoside has the general formula:
Figure US06573247-20030603-C00009
Compounds embodying the present invention can show anti-viral activity. In particular it has surprisingly been found that compounds embodying the present invention can show antiviral activity against for example varicella zoster virus and/or cytomegalovirus.
According to a further aspect of the present invention there is provided a compound according to the present invention for use in a method of treatment, suitably in the prophylaxis or treatment of a viral infection. In this aspect of the present invention when X is NH or N-alkyl R can be C7 to C20 alkyl.
According to a further aspect of the present invention there is provided use of a compound according to the present invention in the manufacture of a medicament for the prophylaxis or treatment of viral infection. In this aspect of the present invention when X is NH or N alkyl R can be C7 to C20 alkyl.
According to a further aspect of the present invention there is provided a method of prophylaxis or treatment of viral infection comprising administration to a patient in need of such treatment an effective dose of a compound according to the present invention. In this aspect of the present invention when X is NH or N alkyl R can be C7 to C20 alkyl.
According to a further aspect of the present invention there is provided use of a compound of the present invention in the manufacture of a medicament for use in the prophylaxis or treatment of a viral infection, particularly an infection with the varicella zoster virus or an infection with cytomegalovirus. In this aspect of the present invention when X is NH or N alkyl R can be C7 to C20 alkyl. When the infection is the varicella zoster virus or cytomegalovirus then also in this aspect of the invention R can be aryl or alkylaryl, without the exclusion of R not being a radical equivalent to 4-FC6H5, C6H5, 4-MeOC6H5, 3,5(CF3)2C6H4, 3,5,-F2C6H4, 4-CF3C6H5 or C6H5.
According to a further aspect of the present invention there is provided a pharmaceutical composition comprising a compound of the present invention in combination with a pharmaceutically acceptable excipient. In this aspect of the invention when X is NH or N alkyl R can be C7 to C20 alkyl.
According to a further aspect of the present invention there is provided a method of preparing a pharmaceutical composition comprising the step of combining a compound of the present invention with a pharmaceutically acceptable excipient. In this aspect of the invention when X is NH or N alkyl R can be C7 to C20 alkyl.
The medicaments employed in the present invention can by administered by oral or parenteral routes, including intravenous, intramuscular, intraperitoneal, subcutaneous, transdermal, airway (aerosol), rectal, vaginal and topical (including buccal and sublingual) administration.
For oral administration, the compounds of the invention will generally be provided in the form of tablets or capsules, as a powder or granules, or as an aqueous solution or suspension.
Tablets for oral use may include the active ingredient mixed with pharmaceutically acceptable excipients such as inert diluents, disintegrating agents, binding agents, lubricating agents, sweetening agents, flavouring agents, colouring agents and preservatives. Suitable inert diluents include sodium and calcium carbonate, sodium and calcium phosphate, and lactose, while corn starch and alginic acid are suitable disintegrating agents. Binding agents may include starch and gelatin, while the lubricating agent, if present, will generally be magnesium stearate, stearic acid or talc. If desired, the tablets may be coated with a material such as glyceryl monostearate or glyceryl distearate, to delay absorption in the gastrointestinal tract.
Capsules for oral use include hard gelatin capsules in which the active ingredient is mixed with a solid diluent, and soft gelatin capsules wherein the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin or olive oil.
Formulations for rectal administration may be presented as a suppository with a suitable base comprising for example cocoa butter or a salicylate.
Formulations suitable for vaginal administration may be presented as pessaries, tampons, creams, gels, pastes, foams or spray formulations containing in addition to the active ingredient such carriers as are known in the art to be appropriate.
For intramuscular, intraperitoneal, subcutaneous and intravenous use, the compounds of the invention will generally be provided in sterile aqueous solutions or suspensions, buffered to an appropriate pH and isotonicity. Suitable aqueous vehicles include Ringer's solution and isotonic sodium chloride. Aqueous suspensions according to the invention may include suspending agents such as cellulose derivatives, sodium alginate, polyvinyl-pyrrolidone and gum tragacanth, and a wetting agent such as lecithin. Suitable preservatives for aqueous suspensions include ethyl and n-propyl p-hydroxybenzoate.
The compounds of the invention may also be presented as liposome formulations.
In general a suitable dose will be in the range of 0.1 to 300 mg per kilogram body weight of the recipient per day, preferably in the range of 1 to 25 mg per kilogram body weight per day and most preferably in the range 5 to 10 mg per kilogram body weight per day. The desired dose is preferably presented as two, three, four, five or six or more sub-doses administered at appropriate intervals throughout the day. These sub-doses may be administered in unit dosage forms, for example, containing 10 to 1500 mg, preferably 20 to 1000 mg, and most preferably 50 to 700 mg of active ingredient per unit dosage form.
Embodiments of the present invention will now be described by way of example only. It will be appreciated that modifications to detail may be made whilst still falling within the scope of the invention.
Experimental
In the following examples the bicyclic rings of the compounds are numbered following recommended IUPAC guidelines. Thus 3-(2′-Deoxy-β-D-ribofuranosyl)-6-octyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one has the structure and is numbered as follows:
Figure US06573247-20030603-C00010
Preparation of 5-(1-Decynyl)-2′-deoxyuridine
To a stirred solution of 5-iodo-2′-deoxyuridine (800 mg, 2.26 mmol) in dry dimethylformaldehyde (8 ml), at room temperature under a nitrogen atmosphere, was added dry diisopropylethylamine (584 mg, 0.80 ml, 4.52 mmol), 1-decyne (937 mg, 1.22 ml, 6.78 mmol), tetrakis (triphenylphosphine) palladium (0) (261 mg, 0.226 mmol) and copper (I) iodide (86 mg, 0.452 mmol). The reaction mixture was stirred at room temperature for 19 hours, after which time the reaction mixture was concentrated in vacuo. The resulting residue was dissolved in dichloromethane/methanol (1:1) (6 ml) and an excess of Amberlite IRA-400 (HCO3 − form) was added and the mixture was stirred for 30 minutes. The resin was then filtered, washed with methanol and the combined filtrate was evaporated to dryness. The crude product was purified by silica gel column chromatography using an initial eluent of ethyl acetate, then changing to ethyl acetate/methanol (9:1) via a gradient. The appropriate fractions were combined and the solvent removed in vacuo to yield the product as a cream solid (490 mg, 60%). Recrystallization of the product from hot dichloromethane yielded the pure product as fine white crystals (376 mg, 46%).
1H-nmr (d6-DMSO;300 MHz): 11.56(1H, br.s, NH-3), 8.11(1H, s, H-6), 6.12(1H, dd, 3J=6.6 Hz, H-1′), 5.25(1H, d, 3J=4.2 Hz, 3′-OH), 5.09(1H, t, 5′-OH), 4.24(1H, m, H-3′), 3.79(1H, m, H-4′), 3.59(2H, m, H-5′), 2.36(2H, t, 3J=6.8 Hz, α-CH2), 2.12(2H, m, H-2′a and H-2′b), 1.47(2H, m, β-CH2), 1.38-1.26(10H, m, 5×CH2), 0.87 (3H, t, CH3). 13C-nmr (d6-DMSO; 75 MHz): 16.2(CH3), 21.0, 24.3, 30.4, 30.5, 30.8, 30.9(6×CH2), 33.5(α-CH2), 41.7(C-2′), 63.2(C-5′), 72.4(C-3′), 75.1, 86.8, 89.8, 95.5(C-4′, C-β, C-1′, C-α), 101,3(C-5), 144.9(C-6), 151.7(C-2), 164.0(C-4). Mass spectrum (ES−MS(+ve)): 387[M+Na]+, 365[M+H]+.
All 1H and 13C-NMR spectra were recorded on a Bruker Avance DPX300 spectrometer at 300 MHz and 75 MHz respectively. Chemical shifts were recorded in parts per million (ppm) downfield from tetramethylsilane.
Low resolution mass spectra were recorded on a Fisons Instruments VG Platform Electrospray mass spectrometer run in either positive or negative ion mode, with acetronitrile/water as the mobile phase.
EXAMPLES 1 TO 6
Examples 1 to 6 each embody the present invention and illustrate the effect of chain length in the alkyl group R. In terms of Formula I above each compound had the following components X═O, Z═O Q═O, W═H, R″═R′═H, T═OH and T′═T″═H.
EXAMPLE 1 3-(2′-Deoxy-β-D-ribofuranosyl)-6-dodecyl-2,3dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(1-tetradecynyl)-2′-deoxyuridine (382 mg, 0.91 mmol) in methanol/triethylamine (7:3) (30 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (45 mg, 0.225 mmol). The reaction mixture was then heated to reflux and stirred for 5 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of dichloromethane/methanol (9:1), followed by an eluent of dichloromethane/methanol (8:2). The appropriate fractions were combined and the solvent removed in vacuo, yielding the pure product as a white solid. (188 mg, 49%).
1H-nmr (d6-DMSO; 300 MHz): 8.70 (1H, s, H-4), 6.27 (1H, s, H-5), 6.18 (1H,dd, 3J=5.7 Hz, 6.0 Hz, H-1′), 5.19(1H, d, 3J=4.2 Hz, 3′-OH), 5.05 (1H, t, 3J=4.9 Hz, 5′-OH), 4.25 (1H, m, H-3′), 3.91 (1H, m, H-4′), 3.66 (2H, m, H-5′), 2.60 (2H, t α-CH2), 2.42 and 2.03 (2H, m, H-2′a and H-2′b), 1.61 (2H, m, β-CH2), 1.21 (18H, br.m, 9×CH2), 0.83 (3H, m, CH3). 13C-nmr (d6-DMSO; 75 MHz: 14.7 (CH3), 23.0, 27.2, 28.4, 29.3, 2×29.6, 2×29.8, 2×29.9 (10×CH2), 32.2 (α-CH2), 42.3(C-2′), 61.5 (C-5′), 70.3 (C-3′), 88.2, 88.9 (C-1′ and C-4′), 100.2 (C-5), 107.6 (C-4a), 137.3 (C-4), 154.8 (C-2), 159.1 (C-6), 172.0 (C-7a). Mass spectrum (ES−MS (+ve)); m/z 484 (15%, [M+Cu]+), 459 (20%, [M+K]+), 443 (40%, [M+Na]+), 421 (40%, [M+H]+, 305 (100%, [base+H]+). Elemental analysis (found: C, 65.62%; H, 8.82%; N, 6.90%. C23H36N2O5 requires: C, 65.69%; H, 8.63%; N, 6.66%).
EXAMPLE 2 3-(2′-Deoxy-β-D-ribofuranosyl)-6-decyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a solution of 5-(1-dodecynyl)-2′-deoxyuridine (130 mg, 0.33 mmol) in 10 ml of triethylamine/methanol (7:3) was added copper (I) iodide (8 mg) and the solution heated to reflux for 3 hours. Volatile materials were evaporated and the residue was taken up in 20 ml of chloroform and washed with 2% aqueous solution of disodium ethylene diamine tetra acetate (2×10 ml) and water (10 ml). The combined aqueous layers were extracted with chloroform (2×250 ml). The combined organic layers were dried (MgSO4) and the solvent removed in vacuo to give a solid (59 mg, 45%) which was recrystallized from ethanol and diisopropyl ether (27 mg, 21%).
m.p. 164-165° C. Rf 0.05(EtOAc). 1H-nmr (d6-DMSO; 300 MHz): 8.67(1H, s, H-4), 6.43(1H, s, H-5), 6.16(1H, t, 3J=6.1 Hz, H-1′), 5.28(1H, d, 3J=4.2 Hz, 3′-OH), 5.12(1H, t, 3J=5.1 Hz, 5′-OH), 4.22(1H, m, H-3′), 3.89(1H, m, H-4′), 3.63(2H, m, H-5′), 2.64(2H, t, 3J=7.2 Hz, α-CH2), 2.33 and 2.04(2H, m, H-2′a and H-2′b), 1.60(2H, m, β-CH2), 1.28-1.23(14H, m, 7×CH2), 0.85, (3H, t, J=6.9 Hz, CH3). 13C-nmr(d6-DMSO; 75 MHz): 14.2(CH3), 22.3, 26.6, 27.6, 28.6, 28.9, 28.9, 29.1, 29.2, 31.5 (9×CH2), 41.4(C-2′), 61.0(C-5′), 69.7(C-3′), 87.6, 88.3 (C-1′, C-4′), 106.6, 100.0 (C-4a, C-5), 137.0 (C-4), 154.0 (C-6), 158.5 (C-2), 171.4 (C-7a). Mass spectrum (ES−MS(+ve)): 415[M+Na]+.
EXAMPLE 3 3-(2′-Deoxy-β-D-ribofuranosyl)-6-octyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(1-decynyl)-2′-deoxyuridine (216 mg, 0.59 mmol) in methanol/triethylamine (7:3) (20 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (20 mg, 0.10 mmol). The reaction mixture was then heated to reflux and stirred for 5 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of dichloromethane/methanol (9:1), followed by an eluent of dichloromethane/methanol (8:2). The appropriate fractions were combined and the solvent removed in vacuo, yielding an orange/brown solid. The crude product was triturated and washed with acetone, followed by drying, yielding the pure product as a fine white powder (118 mg, 55%).
1H-nmr(d6-DMSO; 300MHz): 8.63(1H, s, H-4), 6.39(1H, s, H-5), 6.12(1H, dd, 3J=6.0 Hz, 6.4 Hz, H-1′), 5.25(1H, d, 3J=4.5 Hz, 3′-OH), 5.09(1H, t, 5′-OH), 4.19(1H, m, H-3′), 3.86(1H, m, H-4′), 3.60(2H, m, H-5′), 2.60(2H, t, 3J=7.2 Hz, α-CH2), 2.33 and 2.00(2H, m, H-2′a and H-2′b), 1.57(2H, m, β-CH2), 1.21(10H, br.m, 5×CH2), 0.81(3H, t, CH3). 13C-nmr(d6-DMSO; 75 MHz): 14.4(CH3), 22.5, 26.8, 27.8, 28.8, 29.1 (5×CH2), 31.7 (β-CH2), 39.1 (α-CH2), 41.6(C-2′), 61.2(C-5′), 70.1(C-3′), 87.8, 88.5(C-1′ and C-4′), 100.2(C-5), 106.8(C-4a), 137.2(C-4), 154.2(C-2, 158.7(C-6), 171.6(C-7a). Mass spectrum (ES−MS(+ve)): 387 [M+Na]+, 365[M+H]+.
EXAMPLE 4 3-(2′-Deoxy-β-D-ribofuranosyl)-6-hexyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-iodo-2′-deoxyuridine (800 mg, 2.26 mmol) in dry dimethylformaldehyde (8 ml), at room temperature under a nitrogen atmosphere, was added dry diisopropylethylamine (584 mg, 0.80 ml, 4.52 mmol), 1-octyne (747 mg, 1.00 ml, 6.78 mmol), tetrakis (triphenylphosphine) palladium(0) (261 mg, 0.226 mmol) and copper (I) iodide (86 mg, 0.452 mmol). The reaction mixture was stirred at room temperature for 19 hours, after which time thin layer chromatography (ethyl acetate/methanol (95:5)) of the reaction mixture showed complete conversion of the starting material. Copper (I) iodide (80 mg, 0.40 mmol) and triethylamine (15 ml) were then added to the reaction mixture, which was subsequently heated at 70-80° C. for 4 hours. The reaction mixture was then concentrated in vacuo and the resulting residue was dissolved in dichloromethane/methanol (1:1) (8 ml) and an excess of Amberlite IRA-400 (HCO3 − form) was added and the mixture was stirred for 30 minutes. The resin was then filtered, washed with methanol and the combined filtrate was evaporated to dryness. The crude product was initially triturated with acetone and then purified by silica gel column chromatography using an initial eluent of dichloromethane/methanol (95:5), followed by an eluent of dichloromethane/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo to yield the product as a cream solid (196 mg, 26%). Trituration of the product with petroleum ether yielded the pure product as a fine white solid (176 mg, 23%).
1H-nmr(d6-DMSO; 300 MHz): 8.64(1H, s, H-4), 6.40(1H, s, H-5), 6.13(1H, dd, 3J=6.0 Hz, 6.4 Hz, H-1′), 5.25(1H, d, 3J=4.1 Hz, 3′-OH), 5.10(1H, t, 5′-OH), 4.19(1H, m, H-3′), 3.87(1H, m, H-4′), 3.60(2H, m, H-5′), 2.61(2H, t, 3J=7.2 Hz, α-CH2), 2.33 and 2.01(2H, m, H-2′a and H-2′b), 1.57(2H, m, β-CH2), 1.25(6H, br.m, 3×CH2), 0.82(3H, m, CH3). 13C-nmr (d6-DMSO; 75 MHz): 16.2(CH3), 24.2, 28.6, 29.6 (3×CH2), 30.3 (β-CH2), 33.1(α-CH2), 43.4(C-2′), 63.0(C-5′), 71.9(C-3′), 89.6, 90.3(C-1′ and C-4′), 102.0(C-5), 108.6(C-4a), 139.0 (C-4), 156.0(C-2), 161.7(C-6), 173.4(C-7a). Mass spectrum (ES−MS(+ve)): 359[M+Na]+, 337[M+H]+.
Each of the products of Examples 1, 2, 3 and 4 was tested in vitro in tissue culture assays for potent antiviral action with respect to varicella zoster virus (VZV). Acyclovir was included in the test procedure as a control. The results are given in Table I below. VZV (strains OKa and YS) induced cytopathogenicity in human embryonic lung fibroblast (HEL) cells was measured 7 days post infection. EC50 was defined as the drug concentration (in μM) required to reduce virus-induced cytopathicity by 50%.
TABLE I
Compound EC50/VZV/μM CC50/μM
Example 1 ≦1.2 >200
Example 2 0.005  >50
Example 3 0.003  >50
Example 4 1.3 >200
Acyclovir 0.2 >100
Thus in terms of general formula I where R is a straight chain alkyl group having 10 or 8 C atoms and X is O, i.e. equivalent to Examples 2 and 3 respectively, extremely potent antiviral activity was displayed with respect to varicella zoster virus. Where R is a straight chain alkyl group having 12 or 6 C atoms and X is O, i.e. equivalent to Examples 1 and 3 respectively, antiviral activity comparable to acyclovir was displayed.
EXAMPLE 5 3-(2′-Deoxy-β-D-ribofuranosyl)-6-pentyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(1-heptynyl)-2′-deoxyuridine (125 mg, 0.39 mmol) in methanol/triethylamine (7:3) (14 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (15 mg, 0.075 mmol). The reaction mixture was then heated to reflux and stirred for 8 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of ethyl acetate, followed by an eluent of ethyl acetate/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo, yielding the product as an off-white solid (85 mg, 68%). The product was isolated by trituration with diethyl ether, followed by drying, yielding the pure product as a fine white powder (55 mg, 44%).
1H-nmr (d6-DMSO;300 MHz):8.67 (1H, s, H-4), 6.43 (1H, s, H-5), 6.16 (1H,dd, 3J=6.0 Hz,H-1′), 5.29 (1H, d, 3J=4.1 Hz, 3′-OH), 5.13 (1H, m, 5′-OH), 4.22 (1H, m, H-3′), 3.89 (1H, m, H-4′), 3.63 (2H, m, H-5′), 2.64 (2H, t, α-CH2), 2.35 and 2.06 (2H, m, H-2′, and H-2′b), 1.61 (2H, m, β-CH2), 1.30 (4H, m, 2×CH3), 0.87 (3H, m, CH3). 13C-nmr (d6-DMSO; 75 MHz): 14.1 (CH3), 22.0, 26.3 (2×CH2), 27.5 (β-CH2), 30.8 (α-CH2), 41.4 (C-2′), 60.9 (C-5′), 69.8 (C-3′), 87.6, 88.3 (C-1′ and C-4′), 100.0 (C-5), 106.6 (C-4a), 137.0 (C-4), 154.0 (C-2), 158.5 (C-6), 171.4 (C-7a).
EXAMPLE 6 3-(2′-Deoxy-β-D-ribofuranosyl)-6-heptyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-iodo-2′-deoxyuridine (800 mg, 2.26 mmol) in dry dimethylformaldehyde (8 ml), at room temperature under a nitrogen atmosphere, was added dry diisopropylethylamine (584 mg, 0.80 ml, 4.52 mmol), 1-nonyne (842 mg, 1.11, 6.78 mmol), tetrakis (triphenylphosphine) palladium (O) 261 mg, 0.226 mmol) and copper (I) iodide (86 mg, 0.452 mmol). The reaction mixture was stirred at room temperature for 20 hours, after which time t.l.c. (ethyl acetate/methanol (95:9)) of the reaction mixture showed complete conversion of the starting material. Copper (I) iodide (80 mg, 0.40 mmol) and triethylamine (15 ml) and methanol (20 ml) were then added to the reaction mixture which was subsequently heated to reflux for 8 hours. The reaction mixture was then concentrated in vacuo and the resulting residue was dissolved in dichloromethane/methanol (1:3) (20 ml) and an excess of Amberlite IRA-400 (HCO3 − form) and solid sodium thiosulfate was added and the mixture was stirred for 30 minutes. The mixture was then filtered through silica which was subsequently washed with dichloromethane/methanol (6:4) and the combined filtrate was evaporated to dryness. The crude product was initially triturated with hexane and then purified by silica gel column chromatography using an initial eluent ethyl acetate, followed by an eluent of ethyl acetate/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo to yield the product as a yellow solid (660 mg, 84%). Trituration of the product with dichloromethane yielded the pure product as a cream solid (484 mg, 61%).
1H-nmr (d6-DMSO;300 MHz):8.67 (1H,s,H-4), 6.43 (1H,s,H-5), 6.16 (1H, dd, 3J=5.3 Hz, 6.0 Hz, H-1′), 5.29 (1H, d, 3J=4.0 Hz, 3′-OH), 5.13 (1H, t, 5′-OH), 4.22 (1H, m, H-3′), 3.90 (1H, m, H-4′), 3.63 (2H, m, H-5′), 2.63 (2H, t, 3J=7.2 Hz, α-CH2), 2.35 and 2.06 (2H, m, H-2′a and H-2′b), 1.60 (2H, m, β-CH2), 1.25 (8H, br.m, 4×CH2) 0.85 (3H, m, CH3). 13C-nmr (d6-DMSO;75MHz): 16.3 (CH3), 24.5, 28.8, 29.8, 30.8 (5×CH2), 33.6 (α-CH2), 43.6 (C-2′), 63.2 (C-5′), 72.1 (C-3′), 89.8, 90.5 (C-1′ and C4′), 102.2 (C-5), 108.8 (CO4a), 139.2 (C-4), 156.2 (C-2), 160.7 (C-6), 173.6 (C-7a)
Each of the products of Examples 5 and 6 in which R is respectively C5 and C7 was tested in vitro in tissue culture assays for potent anti viral action with respect to Varicella zoster virus (VZV). The results in terms of EC50 which was defined as the drug concentration (in μM) required to reduce virus-induced cytopathicity by 50% are given in Table II below. Equivalent figures for measurements on equivalent compounds embodying the present invention wherein R is C6, C8, C10 or C12, and for acyclovir are also given in the table.
TABLE II
Compound: X = O EC50/VZV/μM
R:
C5 3
C6 1.3
C7 0.17
C8 0.03
C10 0.005
C12 ≦1.2
Acyclovir 0.2
Each of the compounds embodying the present invention shows anti-viral activity greater than or comparable with acyclovir showing increasing efficacy along the series C5 to C10.
EXAMPLES 7, 8 AND 9
Examples 7, 8 and 9 demonstrate the preparation of compounds having a substituted R alkyl group and their efficacy as anti-viral agents. In each case the alkyl group is nC9 and the substituent is terminal. With respect to formula I above, in each case, X is O, Z is O, R′ and R″ are each H, Q is O, W is H, T is OH and T′ and T″ is H.
EXAMPLE 7 3-(2′-Deoxy-β-D-ribofuranosyl)-6-(9-hydroxynonyl)-2,3′-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(11-hydroxy-1-undecynyl)-2′-deoxyuridine (200 mg, 0.51 mmol) in methanol/triethylamine (7:3) (20 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (20 mg, 0.10 mmol). The reaction mixture was then heated to reflux and stirred for 4 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of ethyl acetate, followed by an eluent of ethyl acetate/methanol (95:5). The appropriate fractions were combined and the solvent removed in vacuo, yielding the product (147 mg, 74%) as a pale yellow solid. The product was triturated with dichloromethane, followed by drying, yielding the pure product as a fine white powder suitable for biological testing and elemental analysis.
1H-nmr (d6-DMSO; 300 MHz): 8.67 (1H,s,H-4), 6.43. (1H,s,H-5), 6.16 (1H,dd,3J=6.0 Hz,H-1′),5.28(1H,d,3J=4.2 Hz,3′-OH), 5.12(1H,t,3J=5.3 Hz,5′-OH),4.33(1H,t,3J=4.9 Hz,5.3 Hz, alkyl-OH),4.22(1H,m,H-3′),3.90(1H,m,H-4′),3.64(2H,m,H-5′),2.64 (2H,t,3J=7.2 Hz,α-CH2),2.35 and 2.04(2H,m,H-2′a and H2′b), 1.61(2H,m,β-CH2),1.39-1.25(14H,m,7×CH2). 13C-nmr(d6-DMSO;75 MHz):27.2,28.1,29.1,30.1,30.4,30.7(×2),34.3(8×CH2),42.9 (C-2′),62.4,62.5(C-5′,CH2 CH2OH),71.4(C-3′),89.1,89.8(C-1′ and C-4′),101.5(C-5),108.1(C-4a),138.5(C-4),155.5 (C-2),160.1(C-6),172.9(C-7a). Mass spectrum (ES−MS(+ve)); m/z 433(20%, [M+K]+),417(100%,[M+Na]+),395(20%, [M+H]+), 279(100%, [base+H]+).
EXAMPLE 8 6-(9-chlorononyl)-3-(4-hydroxy-5-(hydroxymethyl)tetrahydro -2-furanyl)-2,3-dihydrofuro[2,3,-d]pyrimidin-2-one
To a stirred solution of crude 5-(11-chloro-1-undecynyl)-1-(4-hydroxy-5-hydroxymethyl)tetrahydro-2-furanyl)1,2,3,4-tetrahydro-2,4,-pyrimidinedione (280 mg) in methanol/triethylamine (7:3) (20 ml), at room temperature under a nitrogen atmosphere, was added copper(I)iodide (15.2 mg, 0.08 mmol). The reaction mixture was then heated to reflux and stirred for 5 hours. The solvent was removed in vacuo and the crude product purified twice by silica gel column chromatography, using ethyl acetate/methanol (9:1) as the eluent. The appropriate fractions were combined and the solvent removed in vacuo, yielding a yellow solid, the crude product (230 mg, 71%). The crude product was then triturated and crystallised with acetone and dried to yield the pure product as a fine white solid.
1H-NMR (d6-DMSO; 300 MHz): 8.67(1H,s,H-4), 642(1H,s,H-4), 642 (1H,s,H-5),6.16 (1H,t,3J=6.0 Hz, H-1′), 5.28 (1H,d,3J=4.2 Hz,3′-OH), 5.12 (1H,t,3J=5.1 Hz, 5′-OH), 4.21 (1H,m,H-3′), 3.94 (1H,m,H-4′), 3.56(4H,m,H-5′ and CH2Cl), 2.64 (2H,t,3J=7.2 Hz,a-CH2), 2.34, 2.05 (2H,m,H-2′a and H-2′b), 1.75 (2H,m,b-CH2), 1.61, 1.44, 1.25 (12H,m,6×CH2).
13C-NMR (d6-DMSO;75 MHz): 172.0 (C-7a), 159.1 (C-6), 154.6 (C-2), 137.6 (C-4), 107.2 (C-4a), 100.6 (C-5), 88.9, 88.2 (C-1′ and C-4′), 70.5 (C-3′), 61.6 (C-5′), 46.2 (CH2Cl), 42.0 (C-2′), 30.0, 29.6, 29.4, 29.2, 29.2, 28.2, 27.4 26.5, (8×CH2).
Mass Spectrum (ES−MS(+ve)):m/z 450 (20%[M+K]+), 435 (45%[M+Na]+), 412 (30%[M+H]+), 297 (10%[Base+H]+).
Each of the products of Examples 7 and 8 was tested in vitro in tissue culture assays for potent antiviral action with respect to varicella zoster virus (VZV). Acyclovir was included in the test procedure as a control. EC50 and CC50 values were measured as described under examples 1 to 6 above.
The results are given in Table III below.
TABLE III
Example R EC50/VZV/μM CC50/μM
7 —C9H18OH 0.4 >200
8 —C9H18Cl 0.006 >200
Acyclovir 0.2 >100
The product of Example 8 was additionally tested in vitro in tissue culture assays for potent antiviral action with respect to cytomegalovirus (CMV). CMV induced cytopatho-genicity in human embryonic lung fibroblast (HEL) cells was measured post infection. EC50 and CC50 were defined as above for VZV. The equivalent data for the known CMV active agent dihydroxypropyl guanine (DHPG) is included in Table IV as a control. The results are given in Table IV below.
TABLE IV
Example R EC50/CMV/μM CC50/μM
8 —C9H18Cl 7.2 200
DHPG 3.1 >200
The product of Example 8 with R equal to —C9H18Cl shows antiviral activity with respect to CMV comparable to DHPG.
EXAMPLES 9 AND 10
Examples 9 and 10 are both comparative Examples. They are each equivalent to the compounds of Examples 1 to 8 with the exception that the R group is respectively —C3H6OH and —C4H8OH.
EXAMPLE 9 3-(2′-Deoxy-β-D-ribofuranosyl)-6-(3-hydroxypropyl)-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(5-hydroxy-1-pentynyl)-2′-deoxyuridine (200 mg, 0.64 mmol) in methanol/triethylamine (7:3) (20 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (20 mg, 0.10 mmol). The reaction mixture was then heated to reflux and stirred for 4 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of ethyl acetate, changing to an eluent of ethyl acetate/methanol (7:3) via a gradient. The appropriate fractions were combined and the solvent removed in vacuo, yielding the product (102 mg, 51%) as a pale yellow solid. The product was purified further by recrystallization from ethanol.
1H-nmr (d6-DMSO; 300 MHz): 8.67 (1H,s,H-4), 6.44 (1H,s,H-5), 6.16 (1H,dd,3J=6.0 Hz,H-1′), 5.29 (1H,d,3J=4.2 Hz, 3′-OH), 5.13 (1H,m,5′-OH), 4.59 (1H,m,alkyl-OH), 4.21 (1H,m,H-3′), 3.90 (1H, m,H-4′), 3.64 (2H,m,H-5′), 3.45 (2H,m,CH2CH 2OH), 2.69 (2H,m,α-CH2), 2.35 and 2.06 (2H,m,H-2′a and H-2′b), 1.75 (2H,m,CH2). 13C-nmr (d6-DMSO; 75 MHz): 25.0 (CH2CH2OH), 42.0 (C-2′), 60.5, 61.6 (C-5′,CH2 CH2OH), 70.5 (C-3′), 88.2, 88.9 (C-1′ and C-4′), 100.5 (C-5), 107.2 (C-4a), 137.6 (C-4), 154.6 (C-2), 159.1 (C-6), 172.0 (C-7a). Mass spectrum (ES−MS (+ve)); m/z 374 (15%, [M+Cu]+), 349 (10%, [M+K]+), 333 (25%, [M+Na]+) , 311 (20%, [M+H]+), 195 (100%, [base+H]+) . Elemental analysis (found: C, 54.23%; H, 5.98%; N,8.84:. C14H18N2O6 requires: C, 54.19%; H, 5.8%; N, 9.03%).
EXAMPLE 10 3-(2′-Deoxy-β-D-ribofuranosyl)-6-(4-hydroxybutyl)-2,3-dihydrofuro[2,3-d]pyrimidin-2-one
To a stirred solution of 5-(6-hydroxy-1-hexynyl)-2′-deoxyuridine (300 mg, 0.92 mmol) in methanol/triethylamine (7:3) (20 ml), at room temperature under a nitrogen atmosphere, was added copper (I) iodide (20 mg, 0.10 mmol). The reaction mixture was then heated to reflux and stirred for 3 hours. The solvent was removed in vacuo and the crude product purified by silica gel column chromatography, using an initial eluent of ethyl acetate, changing to an eluent of ethyl acetate/methanol (8:2) via a gradient. The appropriate fractions were combined and the solvent removed in vacuo, yielding the product (162 mg, 54%) as a pale yellow solid. The product was purified further by recrystallization from ethanol.
1H-nmr (d6-DMSO; 300 MHz): 8.67 (1H,s,H-4), 6.43 (1H,s,H-5), 6.16 (1H,dd,3J=6.0 Hz,H-1′), 5.29 (1H,d,3J=4.1 Hz, 3′-OH), 5.14 (1H,t,3J=5 Hz, 5′-OH), 4.44 (1H,t,3J=5 Hz, alkyl-OH), 4.21 (1H,m,H-3′), 3.90 (1H,m,H-4′), 3.63 (2H,m,H-5′), 3.41 (2H,m,CH2CH 2OH), 2.65 (2H,t,3J=7.2 Hz, α-CH2), 2.35 and 2.04 (2H,m,H-2′a and H-2′b), 1.64 and 1.46 (4H,m,2×CH2). 13C-nmr (d6-DMSO; 75 MHz): 23.3, 27.4 (2×CH2), 31.9 (α-CH2), 41.4 (C-2′), 60.4, 61.0 (C-5′,CH2 CH2OH), 69.9 (C-3′), 87.6, 88.3 (C-1′ and C-4′). 100.0 (C-5), 106.6 (C-4a), 137.0 (C-4), 153.5 (C-2), 158.5 (C-6), 171.4 (C-7a). Mass spectrum (ES−MS(+ve)); m/z 388 (10%,[M+Cu]+), 363 (10%,[M+K]+), 347 (20%,[M+Na]+), 325 (20%, [M+H]+), 209 (100%, [base+H]+). Elemental analysis (found: C,55.34%; H, 6.41%; N, 8.84%. C15H20N2O6 requires: C,55.55%; H, 6.22%; N, 8.64%).
The products of Example 9 and 10 were each tested in vitro in tissue culture assays for potent anti viral action with respect to Varicella zoster virus (VZV). The values of EC50 and CC50 were measured as above. The results are given in Table V below and include those for acyclovir as control.
TABLE V
Example R EC50/VZV/μM CC50/μM
 9 —C3H6OH 9.7 >200
10 —C4H8OH 29 >200
Acyclovir 0.2 >100
Neither the product of Example 9 nor the product of Example 10 demonstrated useful VZV antiviral activity having regard to the control. The low activity is attributed to the short alkyl chain length.
EXAMPLE 11
The present example investigated the effect of altering Q in the above general formula to sulphur.
The compound prepared in terms of the above formula had R=—C9H19, X═O, R′═R″═H, Q═S, Z═O, W═H, T═OH and T′═T″═H.
The compound was prepared by reactions analogous to Example 2, using 4′-thio nucleoside.
The compound was assessed by in vitro tissue culture assay for potent antiviral action with respect to varicella zoster virus (VZV) as described above. The results are given in Table VI below.
TABLE VI
Example R T T′ T″ Q EC50/VZV/μM CC50/μM
11 —C9H19 OH H H S 0.006 93
The product of example 16 shows extremely potent antiviral activity with respect to varicella zoster virus.
EXAMPLES 12 TO 15
Each of Examples 12 to 15 describes compounds according to the above general formula wherein X is NH.
In Examples 12 to 15 in accordance with the above general formula Z═O, Q═O, W═H, T═OH, T′═T″═H, R′═R″═H and R is respectively —C6H11, —C8H17 and —C12H25.
EXAMPLE 12 3-(2′-Deoxy-β-D-ribofuranosyl)-6-hexyl,3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one
To a solution of 3-(2′-Deoxy-β-D-ribofuransoyl)-6-hexyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one in methanol (5 ml) was added 33% aqueous ammonia (5 ml). The reaction vessel was sealed and the reaction mixture heated at ca 50° C. for 20 hours. The solvent was removed in vacuo and the crude product was purified by column chromatography using an eluent of dichloromethane/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo to give the pure product as a glassy solid (48 mg, 60%). The product was then collected as a white powder by trituration with diethyl ether.
1H-nmr (d6-DMSO;300 MHz): 11.04 (1H,s,NH-7, 8.48 (1H,s, H-4), 6.24 (1H, dd, 3J=6.4 Hz,H-1′), 5.90 (1H, s, H-5, 5.25 (1H, d, 3J=4.1 Hz, 3′-OH), 5.10 (1H, t, 5′-OH), 4.22 (1H, m, H-3′), 3.86 (1H, m, H-4′), 3.63 (2H, m, H-5′), 2.28 and 1.99 (2H, m, H-2′a and H-2′b), 1.59 (2H, m, α-CH2), 1.27 (8H, br.m, 4×CH2), 0.85 (3H, t, CH3). 13C-nmr (d6-DMSO: 75 MHz) 14.7 (CH3), 22.8, 2×28.3, 29.0 (4×CH2), 31.8 (α-CH2), 42.1 (C-2′), 61.8 (C-5′), 70.7 (C-3′), 87.4, 88.5 (C-1′ and C-4′), 97.0 (C-5), 109.6 (C-4a), 135.2 (C-4), 143.2 (C-6), 154.6 (C-2); peak for 7a too small to identify.
EXAMPLE 13 3-(2′-Deoxy-β-D-ribofuranosyl)-6-octyl,3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one
To a solution of 3-(2′-Deoxy-β-D-ribofuranosyl)-6-octyl-2,3-dihydrofuro[2,3-d]pyrimidin-2-one in methanol (5 ml) was added 33% aqueous ammonia (5 ml). The reaction vessel was sealed and the reaction mixture heated at ca. 50° C. for 20 hours. The solvent was removed in vacuo and the crude product was purified by column chromatography using an eluent of dichloromethane/methanol (9:1). The appropriate fractions were combined and the solvent removed in vacuo and the product (79 mg, 79%) isolated as a cream powder by trituration with diethyl ether.
1H-nmr (d6-DMSO;300 MHz): 11.13 (1H,s, NH-7), 8.51 (1H, s, H-4), 6.26 (1H, dd, 3J=6.4 Hz, H-1′), 5.91 (1H, s, H-5), 5.29 (1H, m, 3′-OH), 5.14 (1H, m, 5′-OH), 4.24 (1H, m, H-3′), 3.88 (1H, m, H-4′), 3.65 (2H,m,H-5′), 2.30 and 2.00 (2H,m, H-2′a and H-2′b), 1.60 (2H, m, α-CH2), 1.24 (12H, br.m, 6×CH2), 0.85 (3H, m, CH3). 13C-nmr (d6-DMSO; 75 MHz: 16.5 (CH3), 24.6, 30.0 30.1, 31.0, 31.1, 13.2, (6×CH2), 33.8 (α-CH2), 43.9 (C-2′), 63.5 (C-5′), 72.4 (C-3′), 89.2, 90.2 (C-1′ and C-4′), 98.8 (C-5), 111.3 (C-4a), 136.9 (C-4), 144.9 (C-6), 156.4 (C-2); 161.7 (C-7a).
EXAMPLE 14 3-(2′-Deoxy-β-D-ribofuranosyl)-6-dodecyl-3,7-dihydro-2H-pyrollo[2,3-d]pyrimidin-2-one
The above compound was prepared by a method analogous to that described under Examples 12 and 13 above.
EXAMPLE 15
In a compound wherein X is N—H the effect of varying Q to S was investigated. With respect to the above general formula other components were R=—C8H19, R′═R″═H, W═H, T═OH, Z═O and T′═T″═H.
The compound was prepared by reactions analogous to Example 13 using 4′ thionucleoside.
Each of the products of examples 12 to 15 was tested in vitro in tissue culture assays for potent antiviral action with respect to varicella zoster virus (VZV) as described above under Examples 1 to 4. The results are given in Table VII below.
TABLE VII
Example R X Q EC50/VZV/μM CC50/μM
12 —C6H15 —NH O >50
13 —C8H15 —NH O 0.15
14 —C12H25 —NH O 3.7 >200
15 —C9H19 —NH S 0.21 200
Each of the products of Examples 13 to 15 displayed antiviral effect with respect to varicella zoster virus.

Claims (14)

What is claimed is:
1. A compound having the formula:
Figure US06573247-20030603-C00011
wherein:
R is selected from the group consisting of C6 to C20 alkyl, C5 to C20 cycloalkyl, halogens, aryl and alkylaryl, with the proviso that R is not 4-FC6H4, C6F5, 4-MeOC6H4, 3,5-(CF3)2C6H3, 3,5-F2C6H3, 4CF3C6H4, or C6H5;
R′ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arythiol, and aryl;
R″ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy, and aryl;
Q is selected from the group consisting of O, S, and CY2, where Y may be the same or different and is selected from the group consisting of H, alkyl, and halogens;
X is selected from the group consisting of O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2, where Y may be the same or different and is selected from H, alkyl, and halogens, with the proviso that when R is an unsubstituted C6 to C10 alkyl group and Q is O, X is other than NH or N-alkyl;
Z is selected from the group consisting of O, S, NH, and N-alkyl;
U′ and U″ are joined so as to form a ring moiety wherein U′—U″ together is respectively selected from the group consisting of —CTH—CT′T″— and —CT═CT—, and —CT′═CT′—, so as to provide ring moieties selected from the group consisting of:
Figure US06573247-20030603-C00012
 wherein:
T is selected from the group consisting of OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2, and N3;
T′ is selected from the group consisting of H and halogens and where more than one T′ is present they may be the same or different;
T″ is selected from the group consisting of H and halogens; and
W is selected from the group consisting of H, a phosphate group, and a pharmacologically acceptable salt or pro-drug thereof.
2. The compound of claim 1 wherein R is a C7 to C20 alkyl group.
3. The compound of claim 2 wherein R is a C8 to C14 alkyl group.
4. The compound of claim 1 wherein R′ and R″ are each H.
5. The compound of claim 1 wherein Q is O.
6. The compound of claim 1 wherein X is O.
7. The compound of claim 1 wherein Z is O.
8. The compound of claim 1 wherein U′ and U″ are joined to provide the saturated ring moiety
Figure US06573247-20030603-C00013
9. The compound of claim 1 wherein T is OH.
10. The compound of claim 1 wherein each of T′ and T″ is H.
11. A method for preparing a compound according to claim 1 comprising either:
(a) contacting a 5-halo nucleoside analog with a terminal alkyne in the presence of a copper catalyst, or
(b) cyclizing a 5-alkynyl nucleoside in the presence of a copper catalyst.
12. A method of prophylaxis or treatment of a viral infection, wherein the virus is selected from the group consisting of varicella zoster virus and cytomegalovirus, comprising administration to a patient in need of such treatment an effective dose of a compound having the formula:
Figure US06573247-20030603-C00014
wherein:
R is selected from the group consisting of C6 to C20 alkyl, C5 to C20 cycloalkyl, halogens, aryl and alkylaryl,
R′ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arythiol, and aryl;
R″ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy, and aryl;
Q is selected from the group consisting of O, S, and CY2, where Y may be the same or different and is selected from the group consisting of H, alkyl, and halogens;
X is selected from the group consisting of O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2, where Y may be the same or different and is selected from H, alkyl, and halogens, with the proviso that when R is an unsubstituted C6 to C10 alkyl group and Q is O, X is other than NH or N-alkyl;
Z is selected from the group consisting of O, S, NH, and N-alkyl;
U′ and U″ are joined so as to form a ring moiety wherein U′—U″ together is respectively selected from the group consisting of —CTH—CT′T″— and —CT═CT—, and —CT′═CT′—, so as to provide ring moieties selected from the group consisting of:
Figure US06573247-20030603-C00015
 wherein:
T is selected from the group consisting of OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2, and N3;
T′ is selected from the group consisting of H and halogens and where more than one T′ is present they may be the same or different;
T″ is selected from the group consisting of H and halogens; and
W is selected from the group consisting of H, a phosphate group, and a pharmacologically acceptable salt or pro-drug thereof.
13. A pharmaceutical composition comprising a compound having the formula:
Figure US06573247-20030603-C00016
wherein:
R is selected from the group consisting of C6 to C20 alkyl, C5 to C20 cycloalkyl, halogens, aryl and alkylaryl, with the proviso that R is not 4-FC6H4, C6F5, 4-MeOC6H4, 3,5-(CF3)2C6H3, 3,5-F2C6H3, 4-CF3C6H4, or C6H5;
R′ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arythiol, and aryl;
R″ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy, and aryl;
Q is selected from the group consisting of O, S, and CY2, where Y may be the same or different and is selected from the group consisting of H, alkyl, and halogens;
X is selected from the group consisting of O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2, where Y may be the same or different and is selected from H, alkyl, and halogens, with the proviso that when R is an unsubstituted C6 to C10 alkyl group and Q is O, X is other than NH or N-alkyl;
Z is selected from the group consisting of O, S, NH, and N-alkyl;
U′ and U″ are joined so as to form a ring moiety wherein U′—U″ together is respectively selected from the group consisting of —CTH—CT′T″— and —CT═CT—, and —CT′═CT′—, so as to provide ring moieties selected from the group consisting of:
Figure US06573247-20030603-C00017
 wherein:
T is selected from the group consisting of OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2, and N3;
T′ is selected from the group consisting of H and halogens and where more than one T′ is present they may be the same or different;
T″ is selected from the group consisting of H and halogens; and
W is selected from the group consisting of H, a phosphate group, and a pharmacologically acceptable salt or pro-drug thereof;
and a pharmaceutically acceptable excipient.
14. A method of preparing a pharmaceutical composition comprising the step of combining a compound having the formula:
Figure US06573247-20030603-C00018
wherein:
R is selected from the group consisting of C6 to C20 alkyl, C5to C20 cycloalkyl, halogens, aryl and alkylaryl, with the proviso that R is not 4-FC6H4, C6F5, 4-MeOC6H4, 3,5-(CF3)2C6H3, 3,5-F2C6H3, 4-CF3C6H4, or C6H5;
R′ is selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, amino, alkylamino, dialkylamino, nitro, cyano, alkyoxy, aryloxy, thiol, alkylthiol, arythiol, and aryl;
R″ s selected from the group consisting of hydrogen, alkyl, cycloalkyl, halogens, alkyloxy, aryloxy and aryl;
Q is selected from the group consisting of O, S, and CY2, where Y may be the same or different and is selected from the group consisting of H, alkyl, and halogens;
X is selected from the group consisting of O, NH, S, N-alkyl, (CH2)n where n is 1 to 10, and CY2, where Y may be the same or different and is selected from H, alkyl, and halogens, with the proviso that when R is an unsubstituted C6 to C10 alkyl group and Q is O, X is other than NH or N-alkyl;
Z is selected from the group consisting of O, S, NH, and N-alkyl;
U′ and U″ are joined so as to form a ring moiety selected from the group consisting of —CTH—CT′T″— and —CT═CT—, and —CT′═CT′—, so as to provide ring moieties selected from the group consisting of:
Figure US06573247-20030603-C00019
 wherein:
T is selected from the group consisting of OH, H, halogens, O-alkyl, O-acyl, O-aryl, CN, NH2, and N3;
T′ is selected from the group consisting of H and halogens and where more than one T′ is present they may be the same or different;
T″ is selected from the group consisting of H and halogens; and
W is selected from the group consisting of H, a phosphate group, and a pharmacologically acceptable salt or pro-drug thereof;
with a pharmaceutically acceptable excipient.
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US9243025B2 (en) 2011-03-31 2016-01-26 Idenix Pharmaceuticals, Llc Compounds and pharmaceutical compositions for the treatment of viral infections
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US8507460B2 (en) 2011-10-14 2013-08-13 Idenix Pharmaceuticals, Inc. Substituted 3′,5′-cyclic phosphates of purine nucleotide compounds and pharmaceutical compositions for the treatment of viral infections
US9109001B2 (en) 2012-05-22 2015-08-18 Idenix Pharmaceuticals, Inc. 3′,5′-cyclic phosphoramidate prodrugs for HCV infection
US9296778B2 (en) 2012-05-22 2016-03-29 Idenix Pharmaceuticals, Inc. 3′,5′-cyclic phosphate prodrugs for HCV infection
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US9339541B2 (en) 2013-03-04 2016-05-17 Merck Sharp & Dohme Corp. Thiophosphate nucleosides for the treatment of HCV
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