US10669353B2 - Preparation method of outer core octasaccharide of Helicobacter pylori lipopolysaccharide - Google Patents
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- US10669353B2 US10669353B2 US16/215,414 US201816215414A US10669353B2 US 10669353 B2 US10669353 B2 US 10669353B2 US 201816215414 A US201816215414 A US 201816215414A US 10669353 B2 US10669353 B2 US 10669353B2
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- 0 *O[C@H]1OC([C@H]([3*]O)CO[C@@H]2OC(CO[6*])[C@H](O[C@H]3OC(CO[9*])[C@@H]([8*]O)[C@H](O[C@H]4OC(CO[13*])[C@@H]([12*]O)[C@H]([11*]O)C4[10*]O)C3[7*]O)[C@H]([5*]O)C2[4*]O)[C@@H]([2*]O)[C@H]([1*]O)C1O[C@H]1OC([C@H]([16*]O)C[17*]O)[C@@H]([15*]O)[C@H]([14*]O)C1O[C@H]1OC(CO[C@H]2OC(CO[C@H]3OC(C[27*]O)[C@@H]([26*]O)[C@H]([25*]O)C3[24*]O)[C@@H]([23*]O)[C@H]([22*]O)C2[21*]O)[C@@H]([20*]O)[C@H]([19*]O)C1[18*]O Chemical compound *O[C@H]1OC([C@H]([3*]O)CO[C@@H]2OC(CO[6*])[C@H](O[C@H]3OC(CO[9*])[C@@H]([8*]O)[C@H](O[C@H]4OC(CO[13*])[C@@H]([12*]O)[C@H]([11*]O)C4[10*]O)C3[7*]O)[C@H]([5*]O)C2[4*]O)[C@@H]([2*]O)[C@H]([1*]O)C1O[C@H]1OC([C@H]([16*]O)C[17*]O)[C@@H]([15*]O)[C@H]([14*]O)C1O[C@H]1OC(CO[C@H]2OC(CO[C@H]3OC(C[27*]O)[C@@H]([26*]O)[C@H]([25*]O)C3[24*]O)[C@@H]([23*]O)[C@H]([22*]O)C2[21*]O)[C@@H]([20*]O)[C@H]([19*]O)C1[18*]O 0.000 description 11
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- C—CHEMISTRY; METALLURGY
- C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
- C08B—POLYSACCHARIDES; DERIVATIVES THEREOF
- C08B37/00—Preparation of polysaccharides not provided for in groups C08B1/00 - C08B35/00; Derivatives thereof
- C08B37/006—Heteroglycans, i.e. polysaccharides having more than one sugar residue in the main chain in either alternating or less regular sequence; Gellans; Succinoglycans; Arabinogalactans; Tragacanth or gum tragacanth or traganth from Astragalus; Gum Karaya from Sterculia urens; Gum Ghatti from Anogeissus latifolia; Derivatives thereof
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
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- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/55—Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups
Definitions
- the present disclosure relates to a preparation method of outer core octasaccharide of Helicobacter Pylori lipopolysaccharide, belonging to the field of carbohydrate chemistry.
- H.P. Helicobacter Pylori
- H.P. was classified as a Class I carcinogen by the World Health Organization in 1994. It is a Gram-negative bacterium that inhabits the surface of epithelial cells and is covered by mucus on the surface of the gastric mucosa. More than 50% of the world's population has Helicobacter Pylori infection in the upper gastrointestinal tract with up to 70% of infected people in developing countries, and 20% to 30% in developed countries. In acute infections, 20% of patients develop ulcers, and 1% of infected person may even develop gastric cancer or mucosa-associated lymphoma. In 2005, the Nobel Prize in Physiology or Medicine was awarded to two Australian scientists, Warren and Mashall, for their important role in discovering the effect of H.
- H. pylori Pylori on digestive tract diseases and gastric cancer.
- the most common method for treating H. pylori is “triple therapy”, which uses a proton pump inhibitor and two antibiotics to remove H. pylori .
- triple therapy uses a proton pump inhibitor and two antibiotics to remove H. pylori .
- patients are prone to relapse after administration, and often have adverse reactions such as nausea, diarrhea, and pseudomembranous colitis.
- antibiotic-resistant strains of H. pylori have been continuously discovered, which has led to a gradual decrease in the efficiency of antibiotic treatment of H. pylori . Therefore, the development of H. pylori vaccine has always been a hot spot for scientists.
- the oligosaccharide on the surface of H. pylori cells is Lipopolysaccharide (LPS).
- LPS Lipopolysaccharide
- This LPS consists of O-antigen, core structure, and lipid A.
- the core structure of LPS for different serotypes of H. pylori is relatively conservative, so it is a good choice to chemically synthesize its core structure for use as a carbohydrate vaccine for the prevention and treatment of H. pylori infection.
- the core structure of H. pylori includes the inner core and the outer core. The latter is more likely to be exposed to the environment, and plays a very important role in the in vivo immune response caused by H. pylori infection.
- the core structure of H. pylori lipopolysaccharide currently studied is mainly extracted from inactivated bacteria by biological methods.
- the defect is that the amount of product obtained by one extraction is usually small, the molecular structures obtained from extraction are not uniform, and the experimental repeatability is poor. Therefore, we selected the outer core octasaccharide of H. pylori as our target molecules for the chemical total synthesis. Through chemical synthesis, we can obtain a large number of target molecules with uniform and defined structures.
- the technical problem to be solved by the present disclosure is to synthesize an outer core octasaccharide of H. pylori by a chemical method.
- This octasaccharide structure has five glucoses, and the synthesis of ⁇ -1,2-glycosidic bonds is a key step for synthesis of the target octasaccharide.
- the disclosure utilizes the synergistic action of remote neighboring group participation effect, solvent effect, temperature effect, additive and leaving group to improve the ⁇ -selectivity during the glycosylation process. This synergistic solution successfully solves the problem of the formation of ⁇ -glycosidic bond of glucose.
- a final protected target octasaccharide is synthesized using the synthetic glucose building block, galactose building block, and heptose building block, and then the protection is removed to obtain the target octasaccharide as shown in Formula I.
- the reducing end of the octasaccharide is a linker with an amino group, which can bind with protein to prepare a glycoconjugate vaccine.
- R 1 , R 2 , R 3 , R 6 , R 7 , R 8 , R 10 , R 12 , R 14 , R 15 , R 16 , R 18 , R 20 , R 21 , R 23 , R 24 , and R 26 are H or benzyl (Bn);
- R 5 , R 11 , R 17 , R 19 , R 22 , and R 25 is H or 2-naphthylmethyl (Nap);
- R 4 , R 9 , R 13 , and R 27 are ester groups.
- N is nitrogen.
- the disclosure also provides a method for synthesizing the compound of Formula I, which specifically comprises the following steps:
- Step 1 a glucose building block A is synthesized.
- the structure of the sugar building block A is as shown in Formula II, the terminal group is N-phenyl-trifluoroacetimidate as a leaving group, and the remaining substituents R n are shown in the Formula I.
- the method for synthesizing the monosaccharide building block A comprises: using peracetylated glucose as a starting material, reacting it with p-thiocresol under the action of a Lewis acid to form a peracetylthioglycoside compound, and deacetylating under an alkaline condition to expose four hydroxy groups.
- Step 2 a galactose building block B is synthesized.
- the structure of the sugar building block B is as shown in the Formula III, the terminal group is protected by t-butyldibutylsilyl (TBS), and the remaining substituents R n are shown in the Formula I.
- TBS t-butyldibutylsilyl
- the method for synthesizing the monosaccharide building block B comprises: using a compound 2,3-di-propylidene-6-benzylethylthiogalactose as a starting material, protecting 2-OH with Bz to obtain a 2-OBz compound, opening the propylidene group of the 2-OBz compound under the action of an acid to obtain a 2,3-dihydroxy compound, selectivity protecting 3-OH of the 2,3-dihydroxy compound with Bn to obtain a 3-OBn compound, protecting 4-OH of the 3-OBn compound with Lev to obtain a 4-Lev thioglycoside compound, hydrolyzing the 4-Lev thioglycoside compound by NBS to expose a anomeric group OH, reacting the anomeric group —OH with t-butyldimethylchlorosilane (TBSCl) to obtain a galactose with anomeric OH protected by TBS, and removing Lev with hydrazine acetate to obtain a
- Step 3 heptose building blocks C and D are synthesized.
- the terminal group of the sugar building block C is protected by ethylthio group, and R 17 is protected by Nap;
- the terminal group of the sugar building block D is a linker, for example, O—(CH 2 ) n —N(Bn)Cbz or O—(CH 2 ) n —SBn or O—(CH 2 ) n —N 3 ;
- R 17 is protected by acyl; and the remaining substituents R n are shown in Formula I.
- the method for synthesizing the monosaccharide building blocks C and D comprises: using 2,3-O-propylidene-4-O-benzylmannoethylthioside as a starting material, obtaining the corresponding aldehyde via Swern oxidation, after that, extending the carbon chain at 6-position via Wittig olefination to obtain a 6-deoxy olefin compound, dihydroxyating the olefin compound to obtain a 6,7-di-hydroxy compound, selectively protecting 7-OH by Nap using dibutyltin oxide (Bu 2 SnO) to obtain a 7-Nap compound, protecting 6-OH with Bn to obtain a fully protected compound; removing the propylidene group of the fully protected compound under the condition of 80% acetic acid to obtain a 2,3-di-hydroxy compound, selectively protecting 3-OH with dibutyltin oxide (Bu 2 SnO) and Nap to obtain the heptose building block C; protecting
- Step 4 a trisaccharide donor is assembled.
- the trisaccharide building block G (Formula V) is synthesized using sugar building blocks.
- the condition for the glycosylation reaction is as follows.
- the reaction solvent is Et 2 O/DCM, thiophene, being 10 equivalents of the donor is added, a 4 ⁇ molecular sieve is used as a desiccant, the reaction temperature is 0° C., the reaction time is 3 to 5 h, and the reaction process is under argon gas protection.
- the reaction is monitored with a TLC plate. After completion of the reaction, the reaction is quenched with pyridine and the product is purified using a silica gel column.
- the terminal group of the trisaccharide G is N-phenyl-trifluoroacetimidate as a leaving group and the trisaccharide G serves as a glycosyl donor in the octasaccharide assembly.
- Step 5 a pentasaccharide acceptor is assembled.
- the pentasaccharide H (Formula VI) is synthesized using building block in hand, the glycosylation reaction condition for the glycoimidates is as follows.
- the reaction solvent is Et 2 O/DCM, thiophene, being 10 equivalents of donor is added, a 4 ⁇ molecular sieve is used as a desiccant, the reaction temperature is 0° C., the reaction time is 3 to 5 h, and the reaction process is under argon gas protection.
- the reaction is monitored with a TLC plate. After completion of the reaction, the reaction is quenched with pyridine and the product is purified using a silica gel column.
- NIS/TMSOTf or NIS/TfOH is used as a promoter
- DCM is used as a solvent
- the 4 ⁇ molecular sieve is used as a desiccant.
- the synthetic pentasaccharide serves as a glycosyl acceptor in the octasaccharide assembly.
- Step 6 an octasaccharide is assembled, and the assembly of the octasaccharide adopts the [3+5] synthesis strategy.
- the reaction solvent is DCM
- the promoter is TMSOTf
- the reaction temperature is 0° C.
- the reaction time is 7 h
- the reaction process is under argon gas protection.
- the reaction is monitored with a TLC plate. After completion of the reaction, the reaction is quenched with pyridine and the product is purified using a silica gel column.
- Step 7 the octasaccharide is deprotected.
- the acyl of the protected octasaccharide is removed under an alkaline condition.
- the aromatic group is removed by using Pd/C, H 2 for 3 days.
- the purification is carried out with a reverse phase C18 column to finally obtain the target octasaccharide as shown in Formula VIII.
- the disclosure also provides a method for generating a ⁇ -glycosidic bond of glucose, wherein the glycosyl donor and acceptor are co-distilled 2 to 3 times in toluene, dry DCM or DCM/Et 2 O is added; the substrate concentration is 0.01-0.1 M, the activated 3 ⁇ or 4 ⁇ molecular sieve is used as a desiccant, thiophene, being 8-10 equivalents of thiophene is added; the reaction is stirred at room temperature for 20-30 min, then cooled to ⁇ 50-0° C., TMSOTf is added as a promotor, the reaction time is 1-7 h; and the reaction is terminated with pyridine.
- the glycosyl donor and acceptor are co-distilled three times in toluene, and dry DCM or DCM/Et 2 O in a volume ratio of 1:2 is added; the substrate concentration is 0.02-0.05 M, the activated 3 ⁇ or 4 ⁇ molecular sieve is used as a desiccant, thiophene, being 10 equivalents of the glycosyl donor, is added; the reaction is stirred at room temperature for 20-30 min, then cooled to 0° C., TMSOTf is added as a promotor, the reaction time is 3-5 h; and the reaction is terminated with pyridine.
- the disclosure is the chemical synthesis of the outer core octasaccharide of H. pylori .
- a method which is very advantageous for the formation of ⁇ -glycosidic bond of glucose is found by a protecting group strategy, a solvent effect, and a temperature effect, and the method is applied to the synthesis of the outer core octasaccharide of H. pylori .
- the synthesized outer core octasaccharide of H. pylori is linked to an antigenic protein to form a glycoconjugate, which plays an important role in the development of a vaccine for the prevention and treatment of H. pylori.
- FIG. 1 Synthesis of sugar building block 8
- FIG. 2 Synthesis of sugar building block 21
- FIG. 3 Synthesis of sugar building block 28
- FIG. 4 Assembly of trisaccharide donor 32
- FIG. 5 Assembly of pentasaccharide acceptor 42;
- FIG. 6 Synthesis of target octasaccharide 41.
- the calculation method of the yield of the present disclosure is “product (mol)/reaction substrate (mol)*100%.
- the method for identifying the structure of the compound in the present disclosure is a nuclear magnetic resonance spectrum measurement (400 M/600 M/700 M), high resolution mass spectrometry measurement, and optical rotation measurement, and the results have been listed in the specific synthesis of each compound.
- FIG. 1 The synthesis of the building block 8 is shown in FIG. 1 :
- peracetylated glucose 1 is used as a starting material and is reacted with p-thiocresol under the action of boron trifluoride etherate (BF 3 .OEt 2 ) to form peracetylthioglycoside compound 2.
- boron trifluoride etherate BF 3 .OEt 2
- the acetyl group is removed under the action of sodium methoxide (NaOCH 3 ) to expose four hydroxy groups.
- the 4,6-benzylidene group is selectively opened by using borane (BH 3 .THF) and trimethylsilyl trifluoromethanesulfonate (TMSOTf) to expose 6-OH to obtain a compound 6.
- TMSOTf trimethylsilyl trifluoromethanesulfonate
- the 6-OH of compound 6 is protected with benzoyl (Bz) to obtain a fully protected thioglucoside compound 7.
- the thioglycoside is hydrolyzed under a NBS condition to expose a terminal group OH, and the terminal group —OH is reacted with CF 3 CNPhCl to obtain a glucose building block 8.
- the compound 2 (7.3 g, 16.1 mmol) was dissolved in methanol (108 mL). MeONa (173 mg, 3.2 mmol) was added and the reaction was stirred at room temperature for 1 h. The reaction solution was neutralized with IR-120 resin (H + ), filtered and concentrated, and the crude product was boiled twice with toluene. The obtained crude product was dissolved in DMF (54 mL), and p-methylbenzaldehyde dimethyl acetal (3.6 mL, 24.1 mmol) and p-toluenesulfonic acid monohydrate (456 mg, 2.4 mmol) were added. The reaction was stirred at 65° C.
- the compound 4 (130 mg, 0.25 mmol) was dissolved in anhydrous DMF (1.4 mL), and the solution was cooled to 0° C. NaH (22.4 mg, 0.56 mmol) was added and then BnBr (49.9 uL, 0.42 mmol) was added. The reaction solution was stirred at room temperature for 3.5 h. After the reactant disappeared, the solution was cooled to 0° C., and water was added dropwise to quench the reaction. The reaction solution was extracted with DCM three times. The organic phase was dried with anhydrous Na 2 SO 4 , concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 6:1) to obtain a compound 5 (130 mg, 86%).
- the compound 5 (768 mg, 1.1 mmol) was dissolved in a mixed solvent of DCM/H 2 O (9:1, v/v, 48.9 mL), and the reaction solution was cooled to 0° C. 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) (186 mg, 0.82 mmol) was added. The reaction temperature was raised to room temperature and the reaction was continued for 4 h.
- DDQ 2,3-dichloro-5,6-dicyano-1,4-benzoquinone
- reaction solution was diluted with DCM, sequentially washed with 10% of Na 2 S 2 O 3 solution and saturated NaHCO 3 solution, dried with Na 2 SO 4 , filtered, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 10:1) to obtain a compound 5′ (275 mg, 92%).
- Structural identification data has been reported in the literature.
- the compound 7 (100 mg, 0.14 mmol) was dissolved in DCM/H 2 O (v/v, 10:1, 7 mL). The solution was cooled to 0° C. and TfOH (1.2 uL, 0.014 mmol) was added. The reaction was stirred at 0° C. for 3 h and terminated by the addition of NEt 3 . The reaction solution was washed with saturated NaHCO 3 , dried with anhydrous Na 2 SO 4 , concentrated and purified by column chromatography to obtain an intermediate (78.6 mg). The intermediate was dissolved in dry DCM (3.75 ml). The reaction solution was cooled to 0° C.
- the synthesis route of the building block 21 is shown in FIG. 2 .
- 2,3-O-propylidene-4-O-benzylmannoethylthioside 9 is used as a starting material, and subjected to Swern oxidation to obtain a corresponding aldehyde compound 10. Then, the carbon chain at 6-position is extended via witting to obtain a 6-deoxy olefin compound 11.
- the olefin compound is subjected to dihydroxylation under the co-action of potassium osmate (K 2 OsO 4 ), potassium ferricyanate (K 3 Fe(CN) 6 ) and potassium carbonate (K 2 CO 3 ) to obtain a 6,7-di-hydroxy compound 12.
- 7-OH of a compound 13 is selectively protected with Nap by using dibutyltin oxide (Bu 2 SnO), and 6-OH is protected with Bn to obtain a compound 14.
- a compound 15 is obtained after removal of the propylidene group under the action of 80% acetic acid, and 3-OH was selectively protected with Nap to obtain a heptose building block 16.
- 2-OH of the sugar building block 16 is protected with Lev to obtain a compound 17.
- the compound 17 is reacted with a five carbon linker to obtain a heptose 18 with the terminal group linker.
- 7-Nap is removed under the action of DDQ to obtain a compound 19.
- 7-OH of the compound is protected with acetyl to obtain a compound 20, and finally, Lev is removed under the action of hydrazine acetate to obtain a heptose building block 21.
- Oxalyl chloride (0.36 mL, 4.23 mmol) was dissolved in dry DCM (2.2 mL), and the temperature of the solution was lowered to ⁇ 78° C.
- DMSO 0.6 mL, 8.46 mmol
- DCM 3 mL
- a compound 9 1.0 g, 2.82 mmol
- DCM 11.5 mL
- NEt 3 was added, and the reaction temperature was gradually returned to room temperature within 4 h.
- K 2 OsO 2 (OH) 4 (103 mg, 0.28 mmol), K 3 Fe(CN) 6 (11.2 g, 33.9 mmol) and K 2 CO 3 (5.2 g, 37.3 mmol) were added to tert-butanol (56.5 mL) and water (56.5 mL) in a reaction flask.
- the reaction solution was cooled to 0° C., and the compound 11 was dissolved in toluene (22 mL), and was added to the reaction flask.
- the reaction was stirred at 0° C. for 29 h. After the raw material disappeared completely, and the reaction was extracted with ethyl acetate.
- the compound 12 (11.2 mg, 29.3 mmol) was dissolved in toluene (146 mL).
- Bu 2 SnO (10.9 g, 44 mmol) was added to a reaction flask, and the reaction solution was heated to reflux for 4 h. Half of the toluene was distilled off and the reaction solution was cooled to room temperature.
- CsF (6.7 g, 44 mmol), 2-NapBr (9.7 g, 44 mmol), and CH 3 CN (73.3 mL) were added. The reaction solution was reacted at 70° C. overnight.
- the compound 13 (10.3 g, 19.6 mmol) was dissolved in anhydrous DMF (1.4 mL), and the solution was cooled to 0° C. NaH (1.56 g, 39.2 mmol) was added and then BnBr (4.7 mL, 39.2 mmol) was added. The reaction solution was stirred at room temperature for 3.5 h. After the reactant disappeared, the solution was cooled to 0° C., and water was added dropwise to quench the reaction. The reaction solution was extracted with DCM three times.
- the compound 14 was dissolved in 80% aqueous acetic acid, and the reaction solution was stirred at 60° C. for 12 h.
- the TLC plate showed the complete reaction of the raw material.
- the reaction solution was diluted with DCM, washed with saturated NaHCO 3 , dried with Na 2 SO 4 , filtered, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 3:1) to obtain a compound 15 (9.8 g, 96%).
- [ ⁇ ] 22 D 71.5 (c 1.0, CH 3 Cl).
- the compound 15 (50 mg, 87 umol) was dissolved in toluene (0.58 mL), and Bu 2 SnO (24.9 mg, 0.1 mmol) was added to a reaction flask. The reaction solution was heated to reflux for 3 h and cooled to room temperature. CsF (15.2 mg, 0.1 mmol), TBAB (32.2 mg, 0.1 mmol), and BnBr (11.9 ⁇ L, 44 mmol) were added. The reaction solution was heated for reflux for 3 h. The reaction solution was filtered through diatomite, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 3:1) to obtain a compound 16 (43 mg, 74%).
- the compound 17 (595 mg, 0.78 mmol) and N-benzyl-N-benzyloxycarbonyl-5-amino-pentanol (510 mg, 0.78 mmol) were co-distilled three times with toluene. Dry DCM (5 mL) and a 4 ⁇ molecular sieve were added to the mixture. The mixture was stirred at room temperature for half an hour and then cooled to 0° C. NIS (211 mg, 0.94 mmol) and TMSOTf (14 ⁇ L, 78 ummol) were added and the reaction solution was stirred at 0° C. for 3 h. The reaction was terminated by the addition of NEt 3 .
- the compound 18 (420 mg, 0.41 mmol) was dissolved in a mixed solvent of DCM/H 2 O (9:1, v/v, 15.2 mL). The reaction solution was cooled to 0° C., and 2, 3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) (186 mg, 0.82 mmol) was added. The reaction temperature was raised to room temperature and the reaction was continued for 3 h.
- DDQ 3-dichloro-5,6-dicyano-1,4-benzoquinone
- the compound 19 (210 mg, 0.24 mmol) was dissolved in pyridine (2.3 mL), and acetic anhydride (0.45 mL, 4.74 mmol) and a catalytic amount of DMAP were added at 0° C.
- the reaction solution was returned to room temperature, stirred for 12 h, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 3:1) to obtain a compound 20 (203 mg, 92%).
- [ ⁇ ] 22 D 20.4 (c 1.0, CH 3 Cl).
- the compound 20 (190 mg, 0.2 mmol) was dissolved in a mixed solvent of DCM/MeOH (20:1, v/v, 4 mL), and hydrazine acetate (27.6 mg, 0.3 mmol) was added.
- the reaction solution was stirred at room temperature for 2 h.
- the reaction solution was washed with NaHCO 3 , dried with anhydrous Na 2 SO 4 , concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 3:1) to obtain a compound 21 (158 mg, 95%).
- [ ⁇ ] 22 D 34.5 (c 1.0, CH 3 Cl).
- the synthesis route of the building block 28 is shown in FIG. 3 .
- a compound 22 is used as a starting material, and 2-OH is protected with Bz to obtain a compound 23.
- the propylidene group of the compound 23 is opened under the action of 80% acetic acid to obtain a compound 24.
- 3-OH of the compound 24 is selectively protected with Bn to obtain a compound 25.
- 4-OH of the compound 25 is protected with Lev to obtain a compound 26.
- the thioglycoside 26 is hydrolyzed under a NBS condition to expose a terminal group OH, and the terminal group —OH is reacted with t-butyldimethylsilyl chloride (TBSCl) to obtain a galactose 27 with a fully protected terminal group by TBS.
- TBSCl t-butyldimethylsilyl chloride
- Lev is removed under the action of hydrazine acetate to obtain a galactose building block 28.
- the compound 23 (1.2 g, 2.6 mmol) was dissolved in 80% aqueous acetic acid (25 mL), and the reaction solution was stirred at 60° C. for 5 h.
- the TLC plate showed the complete reaction of the raw material.
- the reaction solution was dissolved with DCM, washed with saturated NaHCO 3 , dried with Na 2 SO 4 , filtered, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 1:1) to obtain a compound 24 (0.98 g, 90%).
- [ ⁇ ] 22 D ⁇ 19.4 (c 1.0, CH 3 Cl).
- the compound 24 (4.2 g, 10.1 mmol) was dissolved in toluene (60 mL).
- Bu 2 SnO (3.8 g, 15.2 mmol) was added to a reaction flask, and the reaction solution was heated for reflux for 2 h and cooled to room temperature.
- TBAI (5.6 g, 15.2 mmol) and BnBr (1.8 g, 15.2 mmol) were added.
- the reaction solution was reacted at 65° C. overnight.
- the reaction solution was filtered through diatomite, concentrated, separated and purified by column chromatography (petroleum ether/ethyl acetate, 6:1) to obtain a compound 25 (4.5 g, 87%).
- the compound 26 (317 mg, 0.52 mmol) was dissolved in THF/H 2 O (v/v, 1:1, 5 mL) and NBS (223 mg, 1.25 mmol) was added. The reaction was stirred at room temperature for 5 h. The reaction solution was washed with saturated NaHCO 3 , dried with anhydrous Na 2 SO 4 , concentrated and purified by column chromatography to obtain an intermediate (225 mg). The intermediate was dissolved in dry DCM (2.5 mL). The reaction solution was cooled to 0° C., imidazole (75 mg, 1.11 mmol) and TBSCl (84 mg, 0.56 mmol) were added. The reaction was stirred at room temperature for 12 h.
- the conditions of the glycosylation reaction and the conditions for removing acyl protection groups are as follows.
- the conditions of the glycosylation reaction are as follows.
- the glycosyl donor and acceptor are co-distilled three times in toluene.
- Dry DCM or DCM/Et 2 O (v/v, 1:2) is added at the reaction concentration of 0.02-0.05 M and an activated 3 ⁇ or 4 ⁇ molecular sieve.
- Thiophene being 10 equivalents of glycosyl donor, is added.
- the mixture is stirred at room temperature for 30 min and then cooled to 0° C.
- TMSOTf is added as a promoter and the reaction time is 3-5 h.
- the reaction is terminated with pyridine.
- the reaction solution is filtered and diluted with DCM. After that, the solution is washed with saturated NaHCO 3 , dried over anhydrous Na 2 SO 4 , concentrated, separated and purified by column chromatography.
- the alkaline conditions for removing acyl are as follows.
- the starting material is dissolved in DCM/MeOH (v/v, 1:1) at a reaction concentration of 0.05 M and 0.5 equivalents of MeONa (5M in MeOH) is added.
- the reaction temperature is room temperature, and the TLC plate shows the completion of the reaction.
- the reaction solution is neutralized with Amerlite IR 120 (H + ) resin to pH 7, filtered, concentrated and purified by column chromatography.
- the assembly route of the trisaccharide donor 32 is shown in FIG. 4 .
- the compound 29 (940 mg, 0.81 mmol) was dissolved in a mixed solvent of DCM/MeOH (9:1, v/v, 18 mL). The reaction solution was cooled to 0° C. and 2, 3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) (545 mg, 2.4 mmol) was added. The reaction temperature was raised to room temperature and the reaction was continued for 10 h.
- DDQ 3-dichloro-5,6-dicyano-1,4-benzoquinone
- the compound 31 (54.0 mg, 0.034 mmol) was dissolved in THF (1.7 mL) and cooled to 0° C. AcOH (19.4 ⁇ L, 0.34 mmol) was added and followed by 1 M TBAF in THF (0.34 mL, 0.34 mmol). The solution was stirred at room temperature for 2 h. The reaction solution was diluted with ethyl acetate, then washed with water three times, dried over anhydrous Na 2 SO 4 , concentrated, separated and purified by column chromatography to obtain an intermediate. The intermediate was dissolved in dry DCM and cooled to 0° C.
- the assembly route of the pentasaccharide acceptor 39 is shown in FIG. 5 .
- the synthesis route of the target octasaccharide 41 is shown in FIG. 6 .
- a trisaccharide donor 32 (38.0 mg, 0.015 mmol) and a pentasaccharide acceptor 39 (29.4 mg, 0.01 mmol) were co-distilled three times with toluene.
- Dry DCM (1.0 mL) and an activated 4 ⁇ molecular sieve were added. The solution was stirred at room temperature for 30 min and then cooled to 0° C.
- TMSOTf (0.05 M in DCM, 30 uL, 1.5 umol) was added and the reaction solution was stirred at 0° C. for 6 h. After the completion of reaction, the reaction was terminated with pyridine.
- the compound 41 is a structure of Formula I, wherein R n are all H.
- the compound 40 (10 mg, 2.3 ummol) was dissolved in MeOH/THF (1:1, v/v, 1 mL). 15% NaOH (100 uL) was added and was stirred for 1 h. MeONa (50 mg) was added. The solution was stirred at room temperature for 12 h, and the reaction solution was neutralized to pH 7 by adding Amberlite IR120 H + resin. The solution was filtered, concentrated, separated and purified by column chromatography to obtain a semi-deprotected product.
- the semi-deprotected product was dissolved in DCM/t-Butanol/H 2 O (3:6:1, v/v/v, 2 mL) and Pd/C was added. The mixture was reacted for three days under H 2 pressure at 1 atmosphere, and was filtered, concentrated, and purified on a C18 reverse phase column to obtain a completely deprotected product 41 (2.1 mg, 63%).
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| CN201711304779.6A CN107955082B (en) | 2017-12-11 | 2017-12-11 | Preparation method of Helicobacter pylori lipopolysaccharide outer core octasaccharide |
| PCT/CN2017/116187 WO2019113889A1 (en) | 2017-12-11 | 2017-12-14 | Preparation method for helicobacter pylori lipopolysaccharide outer core octasaccharide |
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| CN109776632B (en) * | 2019-03-01 | 2021-01-29 | 江南大学 | A kind of synthesis method of Helicobacter pylori O: 6 serotype O-antigen sugar chain |
| CN111467368B (en) * | 2020-04-13 | 2021-05-28 | 江南大学 | Application of oligosaccharide compound containing heptose chain in preparation of Helicobacter pylori vaccine |
| CN111943995A (en) * | 2020-08-21 | 2020-11-17 | 华东理工大学 | Oligosaccharide, glycoprotein conjugate and preparation method and application thereof |
| CN112592379B (en) * | 2020-12-18 | 2021-11-16 | 广东药科大学 | beta-D-glucose short-chain fatty acid ester compound and preparation method and application thereof |
| CN114874345B (en) * | 2022-05-09 | 2023-04-28 | 江南大学 | A kind of chemical synthesis method of helicobacter pylori core lipopolysaccharide oligosaccharide antigen sugar chain |
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| CN1673234A (en) * | 2005-01-05 | 2005-09-28 | 达县师范高等专科学校 | Schizo-octa-glycosyl glycoside compound and preparation method thereof |
| US8025880B2 (en) * | 2007-03-01 | 2011-09-27 | Helicure Ab | Immunoglobulin against Helicobacter pylori |
| MY159076A (en) * | 2007-11-08 | 2016-12-15 | Nestec Sa | Use of oligosaccharides containing n-acetyllactosamine for maturation of immune responses in neonates |
| KR101675657B1 (en) * | 2012-03-19 | 2016-11-11 | 막스-플랑크-게젤샤프트 츄어 푀르더룽 데어 비쎈샤프텐 에.파우. | Carbohydrate-glycolipid conjugate vaccines |
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| Brition, Stacey et al., A novel Helicobacter pylori cell-surface polysaccharide, Carbohydrate Research, Dec. 31, 2005(Dec. 31, 2005), vol. 340, pp. 1605-1611. |
| Mario A. Monteiro, Helicobacter pylori: A Wolf in Sheep″s Clothing: The Glycotype Families of Helicobacter pylori Lipopolysaccharides Expressing Histo-Blood Groups: Structure, Biosynthesis, and Role in Pathogenesis, Advances in Carbohyradrate Chemistry and Biochemistry, Dec. 31, 2001(Dec. 31, 2001), vol. 57, pp. 99-158. |
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| CN107955082B (en) | 2019-05-10 |
| WO2019113889A1 (en) | 2019-06-20 |
| CN107955082A (en) | 2018-04-24 |
| JP7208995B2 (en) | 2023-01-19 |
| JP2021505706A (en) | 2021-02-18 |
| US20190177441A1 (en) | 2019-06-13 |
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