US10385346B2 - Xylosidase having improved enzymatic activity - Google Patents
Xylosidase having improved enzymatic activity Download PDFInfo
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- US10385346B2 US10385346B2 US16/157,692 US201816157692A US10385346B2 US 10385346 B2 US10385346 B2 US 10385346B2 US 201816157692 A US201816157692 A US 201816157692A US 10385346 B2 US10385346 B2 US 10385346B2
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- CWCMIVBLVUHDHK-ZSNHEYEWSA-N phleomycin D1 Chemical compound N([C@H](C(=O)N[C@H](C)[C@@H](O)[C@H](C)C(=O)N[C@@H]([C@H](O)C)C(=O)NCCC=1SC[C@@H](N=1)C=1SC=C(N=1)C(=O)NCCCCNC(N)=N)[C@@H](O[C@H]1[C@H]([C@@H](O)[C@H](O)[C@H](CO)O1)O[C@@H]1[C@H]([C@@H](OC(N)=O)[C@H](O)[C@@H](CO)O1)O)C=1N=CNC=1)C(=O)C1=NC([C@H](CC(N)=O)NC[C@H](N)C(N)=O)=NC(N)=C1C CWCMIVBLVUHDHK-ZSNHEYEWSA-N 0.000 description 1
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Images
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/52—Genes encoding for enzymes or proenzymes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/102—Mutagenizing nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/24—Hydrolases (3) acting on glycosyl compounds (3.2)
- C12N9/2402—Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01037—Xylan 1,4-beta-xylosidase (3.2.1.37)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01072—Xylan 1,3-beta-xylosidase (3.2.1.72)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y302/00—Hydrolases acting on glycosyl compounds, i.e. glycosylases (3.2)
- C12Y302/01—Glycosidases, i.e. enzymes hydrolysing O- and S-glycosyl compounds (3.2.1)
- C12Y302/01177—Alpha-D-xyloside xylohydrolase (3.2.1.177)
Definitions
- the present invention relates to a xylosidase, and more particularly to a xylosidase having improved enzymatic activity.
- Xylan is hemicellulose, which is the major component in plant cell wall, and also the second most abundant polysaccharides on earth. Therefore, the hydrolytic enzymes that degrade xylan are highly attractive and widely applied in many industries for a long time.
- Xylan is a long chain polysaccharide, which is composed of many pentose xylose units linked by ⁇ -1,4-glycosidic bond as a backbone of xylan.
- xylan is complex and highly branched heteropolysaccharide which can be decorated by methyl group or acetyl group, even branched by other sugar molecules to form various structures of xylan. Because of this complicated architecture of xylan, the complete degradation of xylan requires different xylanolytic enzymes to work together for decomposing xylan into simple sugars that can be used by organisms.
- xylanolytic enzymes can be divided into several groups including endo- ⁇ -D-xylanase, ⁇ -1,4-xylosidase, arabinase, acetylxylan esterase and ⁇ -glucuronidase.
- ⁇ -1,4-xylosidase (EC 3.2.1.37) is a crucial enzyme for complete degradation of xylan. It is an exoglucosidase that can hydrolyze the non-reducing ends of xylooligosaccharides into simple sugar xylose.
- xylosidase works together with the endo-xylanase and other xylanolytic enzymes, these enzymes can be cooperatively used in many different industries, such as bleaching process in paper industry, dough quality and juice clearance in food industry, animal nutrition in feed industry, even in biofuel production. According to different industrial needs, xylosidase is required to be suitable for different appropriate working conditions. In addition to the protein properties of enzyme, its catalytic efficiency is also the key point for improving industrial enzyme. Higher enzymatic activity represents the cost reduction in the industrial process and further enhances the commercial profit.
- xylosidase is modified by rational design to increase its enzymatic activity, so as to further increase its application potential and economic value in industry.
- An object of the present invention is to modify a xylosidase by means of structural analysis and site-directed mutagenesis for improving the enzymatic activity of the xylosidase and further increasing its application potential and economic value in industry.
- a xylosidase comprising a modified amino acid sequence of SEQ ID NO: 2, wherein the modification is a substitution of phenylalanine at position 35 with glutamate, and a substitution of glutamine at position 41 with histidine.
- the gene encoding the amino acid sequence of SEQ ID NO: 2 is Hixy143A gene isolated from Humicola insolens .
- the xylosidase has a full length amino acid sequence of SEQ ID NO: 10.
- a xylosidase comprising a modified amino acid sequence of SEQ ID NO: 2, wherein the modification is a substitution of phenylalanine at position 35 with glutamate.
- the gene encoding the amino acid sequence of SEQ ID NO: 2 is Hixy143A gene isolated from Humicola insolens .
- the xylosidase has a full length amino acid sequence of SEQ ID NO: 6.
- a xylosidase comprising a modified amino acid sequence of SEQ ID NO: 2, wherein the modification is a substitution of glutamine at position 41 with histidine.
- the gene encoding the amino acid sequence of SEQ ID NO: 2 is Hixy143A gene isolated from Humicola insolens .
- the xylosidase has a full length amino acid sequence of SEQ ID NO: 8.
- FIG. 1 shows the nucleotide sequence and the amino acid sequence of the wild type xylosidase Hixy143A
- FIG. 2 shows the mutagenic primer sequences for site-directed mutagenesis
- FIG. 3 shows the nucleotide sequence and the amino acid sequence of the F35E mutant
- FIG. 4 shows the nucleotide sequence and the amino acid sequence of the Q41H mutant
- FIG. 5 shows the nucleotide sequence and the amino acid sequence of the F35E/Q41H mutant
- FIG. 6 shows the enzymatic activity analysis of the wild type Hixy143A and the three mutants.
- the xylosidase employed in the present invention is encoded by Hixy143A gene isolated from the themophilic fungus Humicola insolens Y1. According to previous studies, the optimal working condition of this xylosidase is at 50° C., pH 6.8.
- the Hixy143A gene was cloned into a vector and transformed into Pichia pastoris for protein expression.
- the present invention analyzed its protein structure and chose some potential amino acids for modifications by site-directed mutagenesis so as to improve the enzymatic activity of the xylosidase.
- FIG. 1 shows the nucleotide sequence and the amino acid sequence of the wild type xylosidase Hixy143A, wherein the Hixy143A gene includes 978 base pairs (the nucleotide sequence was numbered as SEQ ID NO: 1) and encodes 326 amino acids (the amino acid sequence was numbered as SEQ ID NO: 2).
- the Hixy143A gene was cloned into pPICZ ⁇ A vector by EcoRI and NotI.
- the plasmid DNA was linearized by PmeI and then transformed into Pichia pastoris .
- the transformants were selected by YPD plate with 0.1 mg/ml zeocin at 30° C. for 2 days.
- the selected clones were individually inoculated in YPD medium at 30° C. overnight and then amplified in BMGY medium at 30° C. overnight. Finally, the amplified cells were transferred to BMMY medium containing 0.5% methanol to induce the protein expression. The supernatants with induced proteins were collected by centrifugation for following analysis.
- the three mutated genes of Hixy143A were obtained by site-directed mutagenesis. Particularly, these mutated sequences were obtained by polymerase chain reaction method using the wild type Hixy143A gene as the template and using the mutagenic primers shown in FIG. 2 .
- F35E means the phenylalanine at position 35 was substituted with glutamate, and the mutagenic primer F35E was numbered as SEQ ID NO: 3.
- Q41H means the glutamine at position 41 was substituted with histidine, and the mutagenic primer Q41H was numbered as SEQ ID NO: 4. Therefore, the three mutated genes of Hixy143A obtained by site-directed mutagenesis in the present invention were F35E, Q41H and F35E/Q41H.
- FIGS. 3 to 5 show the nucleotide sequences and the amino acid sequences of the three mutants.
- FIG. 3 shows the nucleotide sequence and the amino acid sequence of the F35E mutant, wherein the nucleotide sequence was numbered as SEQ ID NO: 5, the amino acid sequence was numbered as SEQ ID NO: 6, and the phenylalanine at position 35 was substituted with glutamate.
- FIG. 4 shows the nucleotide sequence and the amino acid sequence of the Q41H mutant, wherein the nucleotide sequence was numbered as SEQ ID NO: 7, the amino acid sequence was numbered as SEQ ID NO: 8, and the glutamine at position 41 was substituted with histidine.
- FIG. 3 shows the nucleotide sequence and the amino acid sequence of the F35E mutant, wherein the nucleotide sequence was numbered as SEQ ID NO: 5, the amino acid sequence was numbered as SEQ ID NO: 6, and the phenylalanine at position 35 was substituted with glutamate.
- FIG. 5 shows the nucleotide sequence and the amino acid sequence of the F35E/Q41H mutant, wherein the nucleotide sequence was numbered as SEQ ID NO: 9, the amino acid sequence was numbered as SEQ ID NO: 10, and the phenylalanine at position 35 was substituted with glutamate and the glutamine at position 41 was substituted with histidine.
- the original DNA template was removed by DpnI at 37° C.
- the three mutated genes were individually transformed into E. coli .
- the success of gene mutation was confirmed by DNA sequencing.
- the three successful mutated genes were separately transformed into P. pastoris and then induced for expressing the mutated proteins by the same method mentioned above. Afterwards, the wild type protein and the mutated proteins were further analyzed for their enzymatic activity.
- the xylosidase activity analysis was determined by the measurement of released nitrophenol that is a chromogenic product from the hydrolysis of the substrate p-nitrophenyl- ⁇ -D-xylopyranoside by xylosidase and further calculated to determine the enzymatic activity of xylosidase.
- the reaction mixture composed of diluted protein sample and 5 mM p-nitrophenyl- ⁇ -D-xylopyranoside was incubated at 50° C. for 10 min. The reaction was then stopped by using 2 M Na 2 CO 3 . Finally, the absorption of OD410 nm was detected to determine the activity of xylosidase.
- FIG. 6 shows the enzymatic activity analysis of the wild type Hixy143A and the three mutants.
- the single mutants F35E and Q41H both showed higher activities than did the wild type protein.
- F35E mutant significantly increased the activity of nearly 90% while Q41H mutant increased the activity of about 20%.
- the double mutant F35E/Q41H showed notably increased activity to about 250%, which is much higher than the wild type protein and the single mutants.
- the protein expression levels of the mutants were similar to that of the wild type protein.
- the present invention chose some potential amino acids according to its structural analysis and further modified this enzyme by rational design.
- the three mutants including F35E, Q41H and F35E/Q41H all showed higher enzymatic activities compared to the wild type protein, and even had 2.5-fold increase. Therefore, the present invention successfully improves the enzymatic activity of the xylosidase and further increases its economic value of industrial application.
- xylosidase can be mixed with feed to help the digestion and absorption of the monogastric animals like pig and chicken by degrading feed materials with hemicellulose.
- the enzymes also can reduce or replace the traditional toxic chemical method to reach the same result of bleaching.
- the enzymes provide assistances in the juice clearance and the saccharification step of brewing industry.
- biofuel production xylosidase can degrade substrates to produce single sugars that can be utilized in fermentation by microorganisms.
- xylosidase can be widely used in various industries and has high economic value.
- the present invention modifies the xylosidase by genetic engineering, and the modified enzymes have significantly improved enzymatic activity, so the production cost of the xylosidase can be reduced to further improve the economic value of industrial application.
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Abstract
Description
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| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| TW106136658 | 2017-10-25 | ||
| TW106136658A | 2017-10-25 | ||
| TW106136658A TWI626312B (en) | 2017-10-25 | 2017-10-25 | Xylosidase having improved enzymatic activity |
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| Publication Number | Publication Date |
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| US20190119687A1 US20190119687A1 (en) | 2019-04-25 |
| US10385346B2 true US10385346B2 (en) | 2019-08-20 |
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| CN110699339B (en) * | 2019-09-16 | 2021-12-28 | 天津科技大学 | Low-temperature beta-xylosidase mutant with improved thermal stability and specific activity and coding gene and application thereof |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20130183713A1 (en) * | 2010-08-30 | 2013-07-18 | Novoyzmes A/S | Polypeptides Having Beta-Glucosidase Activity, Beta-Xylosidase Activity, or Beta-Glucosidase Activity and Beta-Xylosidase Activity And Polynucleotides Encoding Same |
| US20140017733A1 (en) * | 2012-06-11 | 2014-01-16 | Codexis, Inc. | Fungal xylanases and xylosidases |
| US8722382B1 (en) * | 2013-04-17 | 2014-05-13 | Dongguan APAC Biotechnology Co., Ltd. | Xylanase having improved enzymatic activity |
| US20140273119A1 (en) * | 2011-12-01 | 2014-09-18 | Novozymes Inc. | Polypeptides Having Beta-Xylosidase Activity and Polynucleotides Encoding Same |
Family Cites Families (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3330375A1 (en) * | 2015-07-29 | 2018-06-06 | Abengoa Bioenergía Nuevas Tecnologías, S. A. | Expression of recombinant beta-xylosidase enzymes |
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2017
- 2017-10-25 TW TW106136658A patent/TWI626312B/en not_active IP Right Cessation
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Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20130183713A1 (en) * | 2010-08-30 | 2013-07-18 | Novoyzmes A/S | Polypeptides Having Beta-Glucosidase Activity, Beta-Xylosidase Activity, or Beta-Glucosidase Activity and Beta-Xylosidase Activity And Polynucleotides Encoding Same |
| US20140273119A1 (en) * | 2011-12-01 | 2014-09-18 | Novozymes Inc. | Polypeptides Having Beta-Xylosidase Activity and Polynucleotides Encoding Same |
| US20140017733A1 (en) * | 2012-06-11 | 2014-01-16 | Codexis, Inc. | Fungal xylanases and xylosidases |
| US8722382B1 (en) * | 2013-04-17 | 2014-05-13 | Dongguan APAC Biotechnology Co., Ltd. | Xylanase having improved enzymatic activity |
Non-Patent Citations (1)
| Title |
|---|
| PIR Accession No. S55893, published Mar. 19, 1997 (Year: 1997). * |
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| Publication number | Publication date |
|---|---|
| TW201917212A (en) | 2019-05-01 |
| TWI626312B (en) | 2018-06-11 |
| US20190119687A1 (en) | 2019-04-25 |
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