ES2234563T5 - Nuevos análogos de nucleósidos y oligonucleótidos - Google Patents

Nuevos análogos de nucleósidos y oligonucleótidos Download PDF

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Publication number
ES2234563T5
ES2234563T5 ES00902887.9T ES00902887T ES2234563T5 ES 2234563 T5 ES2234563 T5 ES 2234563T5 ES 00902887 T ES00902887 T ES 00902887T ES 2234563 T5 ES2234563 T5 ES 2234563T5
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group
carbon atoms
nhbz
substituted
compound
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ES2234563T3 (es
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Masakatsu Kaneko
Koji Morita
Takeshi Imanishi
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Mitsubishi Chemical Foods Corp
Daiichi Sankyo Co Ltd
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Mitsubishi Chemical Foods Corp
Daiichi Sankyo Co Ltd
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    • C07H19/02Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/06Pyrimidine radicals
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10TTECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00Chemistry: analytical and immunological testing
    • Y10T436/14Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/142222Hetero-O [e.g., ascorbic acid, etc.]
    • Y10T436/143333Saccharide [e.g., DNA, etc.]

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Description

imagen1
imagen2
imagen3
imagen4
imagen5
imagen6
imagen7
(continuación)
Ej. del comp. núm.
A R1 R2 R3a R4a
1-6
CH2 H H OH OH
1-7
CH2 H H NH2 H
1-8
CH2 H H NH2 NH2
1-9
CH2 H H NH2 Cl
1-10
CH2 H H NH2 F
1-11
CH2 H H NH2 Br
1-12
CH2 H H NH2 OH
1-13
CH2 H H OMe H
1-14
CH2 H H OMe OMe
1-15
CH2 H H OMe NH2
1-16
CH2 H H Cl H
1-17
CH2 H H Br H
1-18
CH2 H H F H
1-19
CH2 H H Cl Cl
1-20
CH2 H H SH H
1-21
CH2 Bn H NHBz H
1-22
CH2 Bn H OH NHCOCH(CH3)2
1-23
CH2 Bn Bn NHBz H
1-24
CH2 Bn Bn OH NHCOCH(CH3)2
1-25
CH2 PMB H NHBz H
1-26
CH2 PMB H OH NHCOCH(CH3)2
1-27
CH2 PMB PMB NHBz H
1-28
CH2 PMB PMB OH NHCOCH(CH3)2
1-29
CH2 Tr H NHBz H
1-30
CH2 MMTr H NHBz H
1-31
CH2 DMTr H NHBz H
1-32
CH2 TMTr H NHBz H
1-33
CH2 Tr H OH NHCOCH(CH3)2
1-34
CH2 MMTr H OH NHCOCH(CH3)2
1-35
CH2 DMTr H OH NHCOCH(CH3)2
1-36
CH2 TMTr H OH NHCOCH(CH3)2
1-37
CH2 TMS H NHBz H
1-38
CH2 TBDMS H NHBz H
1-39
CH2 TBDPS H NHBz H
1-40
CH2 TIPS H NHBz H
1-41
CH2 TMS H OH NHCOCH(CH3)2
1-42
CH2 TBDMS H OH NHCOCH(CH3)2
1-43
CH2 TBDPS H OH NHCOCH(CH3)2
1-44
CH2 TIPS H OH NHCOCH(CH3)2
1-177
CH2 H H OH NHCOCH(CH3)2
1-178
CH2 H H NHBz H
1-185
CH2 DMTr P(N(iPr)2)(OC2H4CN) OH NHCOCH(CH3)2
1-186
CH2 DMTr P(N(iPr)2)(OC2H4CN) NHBz H
9
(continuación)
imagen8
[Tabla 2]
Ej. del comp. núm.
A R1 R2 R5 R6
2-1
CH2 H H OH H
2-2
CH2 H H OH CH3
2-3
CH2 H H NH2 H
2-4
CH2 H H NH2 CH3
2-5
CH2 H H NH2 F
2-6
CH2 H H Cl H
2-7
CH2 H H OMe H
2-8
CH2 H H SH H
2-9
CH2 Bn H OH H
2-10
CH2 Bn Bn OH H
2-11
CH2 PMB H OH H
2-12
CH2 PMB PMB OH H
2-13
CH2 Tr H OH H
2-14
CH2 MMTr H OH H
2-15
CH2 DMTr H OH H
2-16
CH2 TMTr H OH H
2-17
CH2 TMS H OH H
2-18
CH2 TBDMS H OH H
2-19
CH2 TBDPS H OH H
2-20
CH2 TIPS H OH H
2-21
CH2 Bn H OH CH3
2-22
CH2 Bn Bn OH CH3
2-23
CH2 PMB H OH CH3
2-24
CH2 PMB PMB OH CH3
2-25
CH2 Tr H OH CH3
2-26
CH2 MMTr H OH CH3
2-27
CH2 DMTr H OH CH3
2-28
CH2 TMTr H OH CH3
2-29
CH2 TMS H OH CH3
10
(continuación)
Ej. del comp. núm.
A R1 R2 R5 R6
2-30
CH2 TBDMS H OH CH3
2-31
CH2 TBDPS H OH CH3
2-32
CH2 TIPS H OH CH3
2-33
CH2 Bn H NHBz H
2-34
CH2 Bn Bn NHBz H
2-35
CH2 PMB H NHBz H
2-36
CH2 PMB PMB NHBz H
2-37
CH2 Tr H NHBz H
2-38
CH2 MMTr H NHBz H
2-39
CH2 DMTr H NHBz H
2-40
CH2 TMTr H NHBz H
2-41
CH2 TMS H NHBz H
2-42
CH2 TBDMS H NHBz H
2-43
CH2 TBDPS H NHBz H
2-44
CH2 TIPS H NHBz H
2-45
CH2 Bn H NHBz CH3
2-46
CH2 Bn Bn NHBz CH3
2-47
CH2 PMB H NHBz CH3
2-48
CH2 PMB PMB NHBz CH3
2-49
CH2 Tr H NHBz CH3
2-50
CH2 MMTr H NHBz CH3
2-51
CH2 DMTr H NHBz CH3
2-52
CH2 TMTr H NHBz CH3
2-53
CH2 TMS H NHBz CH3
2-54
CH2 TBDMS H NHBz CH3
2-55
CH2 TBDPS H NHBz CH3
2-56
CH2 TIPS H NHBz CH3
2-225
CH2 H H NHBz H
2-226
CH2 H H NHBz CH3
2-233
CH2 DMTr P(N(iPr)2)(OC2H4CN) OH H
2-234
CH2 DMTr P(N(iPr)2)(OC2H4CN) OH CH3
2-235
CH2 DMTr P(N(iPr)2)(OC2H4CN) NHBz H
2-236
CH2 DMTr P(N(iPr)2)(OC2H4CN) NHBz CH3
2-249
CH2 DMTr P(N(iPr)2)(OCH3) OH H
2-250
CH2 DMTr P(N(iPr)2)(OCH3) OH CH3
2-251
CH2 DMTr P(N(iPr)2)(OCH3) NHBz H
2-252
CH2 DMTr P(N(iPr)2)(OCH3) NHBz CH3
En la Tabla 1 y Tabla 2 anteriores, los compuestos preferidos incluyen los compuestos (1-5), (1-7), (1-23), (1-24), (131), (1-35), (1-39), (1-43), (1-177), (1-178), (1-185), (1-186), (1-193), (1-194), (1-201), (1-202), (2-1), (2-2), (2-3), (24), (2-10), (2-15), (2-19), (2-22), (2-27), (2-31), (2-34), (2-39), (2-43), (2-46), (2-51), (2-55), (2-225), (2-226), (2-233), (2-234), (2-235) o (2-236), los compuestos que se prefieren más pueden incluir 2'-O,4'-C-etilenguanosina (1-5), 2'-O,4'-C-etilenadenosina (1-7), 3',5'-di-O-bencil-2'-O,4'-C-etilen-6-N-benzoiladenosina (1-23), 3',5'-di-O-bencil-2'-O,4'-C-etilen-2-N-isobutirilguanosina (1-24),
11 5
10
15
20
25
30
5'-O-dimetoxitritil-2'-O,4'-C-etilen-6-N-benzoiladenosina (1-31), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-2-N-isobutirilguanosina (1-35), 2'-O,4'-C-etilen-2-N-isobutirilguanosina (1-177), 2'-O,4'-C-etilen-6-N-benzoiladenosina (1-178), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-2-N-isobutirilguanosina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (1-185), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-6-N-benzoiladenosina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (1-186), 2'-O,4'-C-etilenuridina (2-1), 2'-O,4'-C-etilen-5-metiluridina (2-2), 2'-O,4'-C-etilencitidina (2-3), 2'-O,4'-C-etilen-5-metilcitidina (2-4), 3',5'-di-O-bencil-2'-O,4'-C-etilenuridina (2-10), 5'-O-dimetoxitritil-2'-O,4'-C-etilenuridina (2-15), 3',5'-di-O-bencil-2'-O,4'-C-etilen-5-metiluridina (2-22), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-5-metiluridina (2-27), 3',5'-di-O-bencil-2'-O,4'-C-etilen-4-N-benzoilcitidina (2-34), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-4-N-benzoilcitidina (2-39), 3',5'-di-O-bencil-2'-O,4'-C-etilen-4-N-benzoil-5-metilcitidina (2-46), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-4-N-benzoil-5-metilcitidina (2-51), 2'-O,4'-C-etilen-4-N-benzoilcitidina (2-225), 2'-O,4'-C-etilen-4-N-benzoil-5-metilcitidina (2-226), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-uridina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (2-233), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-5-metiluridina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (2-234), 5'-O-dimetoxitritil-2'-O,4'-C-etilen-4-N-benzoilcitidina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (2-235), y 5'-O-dimetoxitritil-2'-O,4'-C-etilen-4-N-benzoil-5-metilcitidina-3'-O-(2-cianoetil N,N-diisopropilo)fosforamidita (2-236).
El compuesto (1) de la presente invención se puede producir de acuerdo con el Procedimiento A que se describe a continuación.
imagen9
En el Procedimiento A, X representa un grupo protector; Y representa un grupo protector; A tiene el mismo significado tal y como se ha definido anteriormente; mientras B1 representa un grupo purin-9-ilo, un grupo purin-9-ilo sustituido o un grupo 2-oxo-pirimidin-1-ilo sustituido, dichos sustituyentes se seleccionan entre R3 y R4 anteriores pero con la exclusión de un grupo amino desprotegido de "un grupo amino que se puede proteger"; mientras B2 representa un grupo purin-9-ilo, un grupo purin-9-ilo sustituido o un grupo 2-oxo-pirimidin-1-ilo sustituido, dichos sustituyentes se eligen entre R3 y R4 anteriores pero con la exclusión de los grupos aminos protegidos de "un grupo amino que se puede proteger"; R7 representa un grupo que forma un grupo saliente; y R8 representa un grupo acilo
12
imagen10
imagen11
imagen12
imagen13
El tiempo de reacción es desde 0 ºC hasta 50 ºC, se prefiere desde 10 ºC hasta 40 ºC.
El tiempo de reacción es desde 10 minutos hasta 24 horas, se prefiere desde 10 minutos hasta 15 horas. Después de la reacción, se obtiene el compuesto deseado (1c) de la presente reacción, por ejemplo, mediante la concentración de la mezcla de reacción, la adición de un solvente orgánico inmiscible con agua tal como acetato de
5 etilo, el lavado con agua, la separación de una fase orgánica que contiene el compuesto deseado, el secado sobre sulfato de magnesio anhídrido y la eliminación por destilación del solvente.
El producto deseado obtenido de este modo se puede purificar más, si es necesario, mediante un procedimiento convencional, por ejemplo, recristalización, y cromatografía de columna de gel de sílice y similares.
El intermediario (3) descrito anteriormente se puede preparar mediante los Procedimientos del B al D que se 10 describen a continuación.
imagen14
En los Procedimientos B y C, X e Y tienen el mismo significado tal y como se ha definido anteriormente; R9 representa un grupo que forma un grupo saliente.
15 El grupo que forma el grupo saliente de R9 puede incluir el grupo descrito en R7 anterior, preferentemente un grupo trifluorometansulfonilo.
17
imagen15
5
10
15
20
25
30
35
40
45
50
(Etapa B-3)
La presente etapa consiste en preparar el compuesto (10) mediante la reacción del compuesto (9) preparado en la Etapa B-2 con un agente reductor en un solvente inerte.
El solvente que se puede utilizar en el presente documento puede incluir hidrocarburos halogenados tales como cloruro de metileno, cloroformo, 1,2-dicloroetano o tetracloruro de carbono; hidrocarburos alifáticos tales como hexano, heptano, ligroína y éter de petróleo; hidrocarburos aromáticos tales como benceno, tolueno y xileno; éteres tales como éter de dietilo, éter de diisopropilo, tetrahidrofurano, dioxano, dimetoxietano y dimetiléter de dietilenglicol; y cetonas tales como acetona, metiletilcetona, metilisobutilcetona isoforona y ciclohexanona; preferentemente hidrocarburos halogenados (en particular cloruro de metileno).
El agente reductor que se puede utilizar en el presente documento puede incluir hidruro de diisobutilaluminio e hidruro de trietoxialuminio, preferentemente hidruro de diisobutilaluminio.
La temperatura de reacción varía dependiendo del material de partida, el solvente y el agente reductor, pero por lo general es desde -100 ºC hasta -50 ºC, preferentemente desde -90 ºC hasta -70 ºC.
El tiempo de reacción varía dependiendo del material de partida, el solvente, el agente reductor y el tiempo de reacción, pero por lo general es desde 30 minutos hasta 12 horas, preferentemente desde 1 hora hasta 5 horas.
Después de la reacción, se obtiene el compuesto deseado (10) de la presente reacción, por ejemplo, mediante la concentración de la mezcla de reacción, la adición de un solvente orgánico inmiscible con agua tal como acetato de etilo, el lavado con agua, la separación de una fase orgánica que contiene el compuesto deseado, el secado sobre sulfato de magnesio anhídrido y la eliminación por destilación del solvente.
El producto deseado obtenido se puede purificar más, si es necesario, mediante un procedimiento convencional, por ejemplo, recristalización, y cromatografía de columna de gel de sílice y similares.
(Etapa B-4)
La presente etapa consiste en preparar el compuesto (3a), uno de los materiales de partida del Procedimiento A mediante la reacción del compuesto (10) preparado en la Etapa B-3 con un agente reductor en un solvente inerte.
El solvente que se puede utilizar en el presente documento puede incluir alcoholes tales como metanol, etanol, npropanol, isopropanol, n-butanol, isobutanol, t-butanol, alcohol isoamílico, dietilenglicol, glicerina, octanol, ciclohexanol y etilglicol de metilo; y ácido acético; preferentemente alcoholes (en particular etanol).
El agente reductor que se puede utilizar en el presente documento puede incluir hidroboruros de metal alcalino tales como hidroboruro de sodio y hidroboruro de litio; compuestos de hidruro de aluminio tales como hidruro de aluminio litio e hidruro de trietóxido de aluminio litio; y borano; preferentemente hidroboruro de sodio.
La temperatura de reacción varía dependiendo del material de partida, el solvente y el agente reductor pero por lo general es desde 0 ºC hasta 50 ºC, preferentemente desde 10 ºC hasta 40 ºC.
El tiempo de reacción varía dependiendo del material de partida, el solvente, el agente reductor y el tiempo de reacción, pero por lo general es desde 10 minutos hasta 12 horas, preferentemente desde 30 minutos hasta 5 horas.
Después de la reacción, se obtiene el compuesto deseado (3a) de la presente reacción, por ejemplo, mediante la descomposición del agente reductor, la concentración de la mezcla de reacción, la adición de un solvente orgánico inmiscible con agua tal como acetato de etilo, el lavado con agua, la separación de una fase orgánica que contiene el compuesto deseado, el secado sobre sulfato de magnesio anhídrido y la eliminación por destilación del solvente.
El producto deseado obtenido de este modo se puede purificar más, si es necesario, mediante un procedimiento convencional, por ejemplo, recristalización, y cromatografía de columna de gel de sílice y similares.
(Procedimiento C)
(Etapa C-1)
La presente etapa consiste en preparar el compuesto (11) mediante la reacción del compuesto (7) preparado en el procedimiento anterior con un agente oxidante en un solvente inerte.
El solvente que se puede utilizar en el presente documento puede incluir hidrocarburos alifáticos tales como hexano, heptano, ligroína y éter de petróleo; hidrocarburos aromáticos tales como benceno, tolueno y xileno; hidrocarburos halogenados tales como cloruro de metileno, cloroformo, tetracloruro de carbono, dicloroetano, clorobenceno y diclorobenceno; ésteres tales como formato de etilo, acetato de etilo, acetato de propilo, acetato de butilo y carbonato de dietilo; éteres tales como éter de dietilo, éter de diisopropilo, tetrahidrofurano, dioxano, dimetoxietano, dimetileter de dietilenglicol; y cetonas tales como acetona, metiletilcetona, metilisobutilcetona, isoforona y
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ciclohexanona; preferentemente hidrocarburos halogenados (en particular el cloruro de metileno).
El agente oxidante que se puede utilizar en el presente documento puede incluir el reactivo de Swern para la oxidación, el reactivo de Dess-Martin para la oxidación, un complejo de trióxido de cromo tal como complejo de hidrocloruro de piridina/trióxido de cromo (clorocromato de piridina y dicromato de piridina), preferentemente el reactivo de Swern para la oxidación (principalmente, sulfóxido de dimetilo/cloruro de oxalilo).
La temperatura de reacción varía dependiendo del material de partida, el solvente y el agente oxidante, pero por lo general es desde -100 ºC hasta -50 ºC, preferentemente desde -100 ºC hasta -70 ºC.
El tiempo de reacción varía dependiendo del material de partida, el solvente, el agente oxidante y el tiempo de reacción, pero por lo general es desde 30 minutos hasta 12 horas, preferentemente desde 1 hora hasta 5 horas.
Después de la reacción, se obtiene el compuesto deseado (11) de la presente reacción, por ejemplo, mediante la descomposición del agente oxidante, la concentración de la mezcla de reacción, la adición de un solvente orgánico inmiscible con agua tal como acetato de etilo, el lavado con agua, la separación de una fase orgánica que contiene el compuesto deseado, el secado sobre sulfato de magnesio anhídrido y la eliminación por destilación del solvente.
El producto deseado obtenido de este modo se puede purificar más, si es necesario, mediante un procedimiento convencional, por ejemplo, la recristalización, y la cromatografía de columna de gel de sílice y similares.
(Etapa C-2)
La presente etapa consiste en preparar el compuesto (12) mediante la reacción del compuesto (11) preparado en la Etapa C-1 con un reactivo aumentador de carbono en un solvente inerte.
El solvente que se puede utilizar en el presente documento puede incluir hidrocarburos alifáticos tal como hexano, heptano, ligroína y éter de petróleo; hidrocarburos aromáticos tales como benceno, tolueno y xileno; hidrocarburos halogenados tales como cloruro de metileno, cloroformo, tetracloruro de carbono, dicloroetano, clorobenceno y diclorobenceno; ésteres tales como formato de etilo, acetato de etilo, acetato de propilo, acetato de butilo y carbonato de dietilo; éteres tales como éter de dietilo, éter de diisopropilo, tetrahidrofuran, dioxano, dimetoxietano, dimetiléter de dietilenglicol; y cetonas tales como acetona, metiletilcetona, metilisobutilcetona, isoforona y ciclohexanona; preferentemente hidrocarburos halogenados (en particular el cloruro de metileno).
El reactivo que se puede utilizar en el presente documento puede incluir el reactivo de Wittig, el reactivo de Horner-Emmons, el reactivo de la reacción de Peterson, el agente de reacción del sistema TiCl4-CH2Cl2-Zn y el reactivo de Tebbe, preferentemente el reactivo de Wittig, el reactivo de Horner-Emmons y el reactivo de Tebbe.
La temperatura de reacción varía dependiendo del material de partida, el solvente y el reactivo aumentador de carbono, pero por lo general es desde -20 ºC hasta 20 ºC, preferentemente 0 ºC.
El tiempo de reacción varía dependiendo del material de partida, el solvente, el reactivo aumentador de carbono y el tiempo de reacción, pero por lo general es desde 30 minutos hasta 12 horas, preferentemente desde 1 hora hasta 5 horas.
Después de la reacción, se obtiene el compuesto deseado (12) de la presente reacción, por ejemplo, mediante la concentración de la mezcla de reacción, la adición de un solvente orgánico inmiscible con agua tal como acetato de etilo, el lavado con agua, la separación de una fase orgánica que contiene el compuesto deseado, el secado sobre sulfato de magnesio anhídrido y la eliminación por destilación del solvente.
El producto deseado obtenido de este modo se puede purificar más, si es necesario, mediante un procedimiento convencional, por ejemplo, la recristalización, y la cromatografía de columna de gel de sílice y similares.
(Etapa C-3)
La presente etapa consiste en preparar el compuesto (3a) mediante la introducción selectiva de un grupo hidroxilo a un carbono terminal de un compuesto de olefina (12) preparado en la Etapa C-2 en un solvente inerte.
El solvente que se puede utilizar en el presente documento puede incluir hidrocarburos alifáticos tales como hexano, heptano, ligroína y éter de petróleo; hidrocarburos aromáticos tales como benceno, tolueno y xileno; hidrocarburos halogenados tales como cloruro de metileno, cloroformo, tetracloruro de carbono, dicloroetano, clorobenceno y diclorobenceno; ésteres tales como formato de etilo, acetato de etilo, acetato de propilo, acetato de butilo y carbonato de dietilo; éteres tales como éter de dietilo, éter de diisopropilo, tetrahidrofurano, dioxano, dimetoxietano y dimetiléter de dietilenglicol; y cetonas tales como acetona, metiletilcetona, metilisobutilcetona, isoforona y ciclohexanona; preferentemente éteres (en particular tetrahidrofurano).
El reactivo de la reacción que se puede utilizar en el presente documento puede incluir borano, disiamilo borano, texil borano, 9-BBN (9-borabiciclo[3.3.1]nonano), preferentemente 9-BBN.
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