EP4651882A1 - Microbiome ingredient combination for lowering uremic toxins in cardiometabolic or neurodegenerative conditions - Google Patents
Microbiome ingredient combination for lowering uremic toxins in cardiometabolic or neurodegenerative conditionsInfo
- Publication number
- EP4651882A1 EP4651882A1 EP24702878.0A EP24702878A EP4651882A1 EP 4651882 A1 EP4651882 A1 EP 4651882A1 EP 24702878 A EP24702878 A EP 24702878A EP 4651882 A1 EP4651882 A1 EP 4651882A1
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- chain fatty
- butyrate
- gos
- fatty acids
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K35/00—Medicinal preparations containing materials or reaction products thereof with undetermined constitution
- A61K35/66—Microorganisms or materials therefrom
- A61K35/74—Bacteria
- A61K35/741—Probiotics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/21—Esters, e.g. nitroglycerine, selenocyanates
- A61K31/215—Esters, e.g. nitroglycerine, selenocyanates of carboxylic acids
- A61K31/22—Esters, e.g. nitroglycerine, selenocyanates of carboxylic acids of acyclic acids, e.g. pravastatin
- A61K31/23—Esters, e.g. nitroglycerine, selenocyanates of carboxylic acids of acyclic acids, e.g. pravastatin of acids having a carboxyl group bound to a chain of seven or more carbon atoms
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7016—Disaccharides, e.g. lactose, lactulose
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/702—Oligosaccharides, i.e. having three to five saccharide radicals attached to each other by glycosidic linkages
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K35/00—Medicinal preparations containing materials or reaction products thereof with undetermined constitution
- A61K35/66—Microorganisms or materials therefrom
- A61K35/74—Bacteria
- A61K35/741—Probiotics
- A61K35/744—Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
- A61K35/745—Bifidobacteria
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K35/00—Medicinal preparations containing materials or reaction products thereof with undetermined constitution
- A61K35/66—Microorganisms or materials therefrom
- A61K35/74—Bacteria
- A61K35/741—Probiotics
- A61K35/744—Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
- A61K35/747—Lactobacilli, e.g. L. acidophilus or L. brevis
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
- A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P13/00—Drugs for disorders of the urinary system
- A61P13/12—Drugs for disorders of the urinary system of the kidneys
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K2300/00—Mixtures or combinations of active ingredients, wherein at least one active ingredient is fully defined in groups A61K31/00 - A61K41/00
Definitions
- Such a composition comprises a specifically selected prebiotic, a specifically selected probiotic and a specifically selected lipid as defined herein.
- Uremic toxins typically can be classified into three categories: free water-soluble low- molecular-weight solutes, protein-bound solutes, and middle molecules, which are usually products of protein/amino acid metabolism by body tissues, particularly the liver.
- Uremic toxins include among others for example urea, indoxyl sulfate, TMAO, p-cresol sulfate, 3-carboxy-4- methyl-5-propyl-2-furanpropionic acid, p-cresylglucuronide and uric acid.
- CKD chronic kidney disease
- Chronic kidney disease for example, is a disease that is characterized by a progressive and gradual loss of renal function and may lead to an accumulation of such uremic toxins, normally cleared by the kidneys, resulting in uremia.
- CVD cardiovascular disease
- the accumulation of uremic toxins in the circulation and in tissues is associated with the progression of CKD and its co-morbidities, including CVD (see Yong Jin Lim et al., Toxins 2021, 13, 142).
- Chronic kidney disease (CKD) and CVD are not the sole conditions that show elevated levels of uremic toxins but also concern other cardiometabolic and neurological conditions.
- early indicators of excessive uremic toxin contents are often widespread and not always clearly attributable to such cardiometabolic and neurological conditions as a primary cause at first sight.
- the accumulation of uremic toxins may lead to syndromes, and symptom manifestations, including but not exhaustive to fatigue, anorexia and protein energy wasting, which ultimately affect the quality of life of individuals afflicted with high levels of circulating uremic toxins.
- uremic syndrome anorexia
- poor quality of life and even death of patients Early intervention is therefore of high importance and essential in effectively treating such diseases to positively influence their outcome.
- the first reason is typically an increased accumulation due to poor kidney filtration.
- the second reason is an altered production due to several modifications in metabolism including the liver, gut and microbiome.
- a low protein diet is however often not sustainable as the patients usually require a balanced diet and good nutrition.
- protein is required to manage other complications associated with kidney disease (e.g. protein energy wasting).
- a low protein diet is even detrimental, e.g., in case of anorexia and muscle dystrophy, as well as generally in elderly people, all of which require a minimum protein content if not even elevated protein levels to prevent or treat excessive muscle protein degradation (muscle catabolism).
- a further method of addressing uremic toxins which could be regarded as the gold standard in the management of kidney disease, is the removal of uremic toxins via dialysis. However, this requires continued treatment, that needs to be carried out in many cases in specific nursing facilities or hospitals, and is therefore burdensome and cost-intensive.
- uremic toxins cannot be removed by dialysis.
- dialysis is inefficient in removing protein-bound uremic toxins such as p-cresyl sulfate, indoxyl sulfate, 3-carboxy-4-methyl-5-propyl-2-furanpropionic acid and p-cresylglucuronide
- gut microbiota-derived metabolites which are used as substrates for tissue uremic toxin metabolism.
- Such methods include e.g.
- AST-120 which is a charcoal base solution that aims to remove the microbiota-derived precursors in the gut level
- probiotics/live therapeutics to correct dysbiosis, to break down uremic toxin precursors
- fiber/glycans/oligosaccharides to correct dysbiosis.
- uremic toxin accumulation in the systemic circulation may be at least partially independent from the production of uremic toxin precursors by the gut microbiota.
- SGLT2 inhibitors intended to help improving glomerular hemodynamic function.
- Such SGLT2 inhibitors are thought to ameliorate other local and systemic mechanisms involved in the pathogenesis of CKD.
- these medicines have not been fully shown to improve uremic toxin levels in circulation and to provide a reliable basis for treatment of conditions caused by such uremic toxins, e.g. in individuals with cardiometabolic and neurological conditions. Therefore, there exists a need in the art to provide an alternative and preferably improved concept of therapy to more effectively address such issues and to avoid and/or treat the accumulation of uremic toxins in a patient, preferably in individuals with cardiometabolic and neurological conditions, particularly chronic kidney disease.
- the invention as described herein addresses such needs and provides compositions, uses and corresponding therapeutic methods, that avoid and/or treat the accumulation of uremic toxins in such patients.
- the invention also provides kits of parts for such purposes. Summary of the invention The problems described above are solved by the subject matter of the independent claims and are described in further detail in the following specification, its embodiments and aspects, and the dependent claims. Embodiments and aspects as disclosed herein may be combined with each other as required and if not explicitly stated otherwise.
- the invention is particularly directed to a new composition targeting multiple direct and indirect mechanisms that contribute to the avoidance of production of uremic toxins and prevent or at least lower the levels of accumulation of uremic toxins.
- composition preferably suitable for use in lowering and/or avoiding accumulation of uremic toxins in cardiometabolic or neurodegenerative conditions.
- the composition comprises a specifically selected probiotic bacterium, a specifically selected prebiotic and a specifically selected lipid.
- the composition comprises: (a) a probiotic bacterium selected from: - a probiotic bacterium lacking a gene for producing at least one of urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, betaine and/or glutarate; and/or - a probiotic bacterium lacking at least one bacterial enzyme selected from urease, carnitine monooxygenase & reductase, tryptophanase and/or hydroxyphenylacetate; and/or - a probiotic bacterium expressing at least one bacterial enzyme selected from of ⁇ - galactosidase, ⁇ -galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ -fructofuranosi
- the composition as defined herein comprises a probiotic bacterium.
- a probiotic bacterium may be selected from probiotic bacteria, lacking a gene for producing at least one of urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, betaine and/or glutarate.
- such a probiotic bacterium may also be selected from probiotic bacteria, lacking, at least one bacterial enzyme selected from urease, carnitine monooxygenase & reductase, tryptophanase and/or hydroxyphenylacetate.
- such a probiotic bacterium may be selected from probiotic bacteria, expressing at least one bacterial enzyme selected from ⁇ -galactosidase, ⁇ - galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ -fructofuranosidase and/or Licheninase.
- Such a probiotic bacterium preferably meeting all three criteria may be selected from any of the following species or subspecies: Bifidobacterium animalis subspecies lactis, Bifidobacterium longum subspecies infantis, Bifidobacterium longum subspecies longum, Enterococcus faecium, Lactobacillus johnsonii, Lactococcus lactis, Lacticaseibacillus paracasei (previously classified as Lactobacillus paracasei), Limosilactobacillus reuteri (previously classified as Lactobacillus reuteri), Lacticaseibacillus rhamnosus (previously classified as Lactobacillus rhamnosus), Staphylococcus carnosus and/or Streptococcus thermophiles, preferably, Lactobacillus johnsonii,
- such a probiotic bacterium preferably meeting all three criteria may be selected from any of the following strains: a. Bifidobacterium animalis subspecies lactis NCC 2818, which was deposited on 07 June 2005 with CNCM [Collection Nationale de Cultures de Microorganismes at Institute Pasteur, Paris, France] and assigned accession number CNCM I-3446); b. Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T)), which is available from worldwideweb.atcc.org/products/15697]); c.
- NCC 2705 Bifidobacterium longum subspecies longum NCC 2705 ( CNCM I-2618) (NCBI refseq; GCA_000007525.1) [NCC 2075 was deposited on 29 January 2001 with CNCM and assigned accession number CNCM I-2618]; d. Enterococcus faecium NCC 2768 (NCIMB 10415 – which is available from Cerbios- Pharma SA Barbengo Switzerland (cerbios.swiss/e-faecium-sf68-a-model-for-efficacy- safety-for-pharmaceutical-probiotics/); e.
- Lactobacillus johnsonii NCC 533 [originally known as La 1 which was deposited on 30 June 1992 with CNCM and assigned accession number CNCM I-1225)(see also NCBI refseq; GCA_000008065.1, and GenBank AE017198.1 (included as SEQ ID NO: 1))]; f. Lactococcus lactis NCC 2287 ( CNCM I-4154) [NCC 2287 was deposited on 24 April 2009 with CNCM and assigned accession number CNCM I-4154] ; g. Lacticaseibacillus paracasei NCC 2461 (CNCM I-2116) [NCC 2461 was deposited on 12 January 1999 with CNCM and assigned accession number CNCM I-2116]; h.
- Lacticaseibacillus rhamnosus NCC 4007 ( CGMCC 1.3724) [NCC 4007 was deposited in October 2004 with identification number CGMCC 1.3724 with CGMCC [China General Microbiological Culture Collection Center (CGMCC) Institute of Microbiology, Chinese Academy of Sciences, P.O. Box 2714, Beijing 100080, China]; i. Staphylococcus carnosus NCC 1052 (CNCM I-5400) [NCC 1052 was deposited on 01 February 2019 with CNCM and assigned accession number CNCM I-5400]; j.
- Staphylococcus carnosus NCC 971 (CNCM I-5398) [NCC 971 was deposited with CNCM on 01 February 2019 and assigned accession number CNCM I-5398]; and/or k.
- Streptococcus thermophilus NCC 2496 (CNCM I-3915) [NCC 2496 was deposited with CNCM on 05 February 2008 and assigned accession number CNCM I-3915]; or a probiotic bacterium having a genome that has at least 95% Average Nucleotide Identity (ANI), preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99%ANI or even 99.5% ANI or 99.9% ANI to the respective genomic sequences according to any one of a.
- ANI Average Nucleotide Identity
- CNCM identifications refer to the Collection Nationale de Cultures de Microorganismes at Institut Pasteur, 22 rue du dondel Roux, 75724 Paris, France.
- CGMCC identifications refer to China General Microbiological Culture Collection Center (CGMCC) Institute of Microbiology, Chinese Academy of Sciences, P.O. Box 2714, Beijing 100080, China.
- the probiotic bacteria of the composition as defined herein is selected from Lactobacillus johnsonii NCC 533 (CNCM I-1225) or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225).
- the NCBI reference sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) is GCA_000008065.1 (SEQ ID NO: 1).
- the composition as defined herein also comprises a prebiotic.
- a prebiotic is selected from carbohydrates, wherein the carbohydrate can be hydrolyzed by at least one bacterial enzyme selected from ⁇ -galactosidase, ⁇ -galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ -fructofuranosidase and/or Licheninase.
- a carbohydrate is preferably a prebiotic selected from ⁇ -galacto-oligosaccharides, raffinose, ⁇ -galacto- oligosaccharides, and cello-oligosaccharides, or a combination thereof.
- such a prebiotic is selected from pea galacto-oligosaccharides ( ⁇ -GOS), soy galacto- oligosaccharides ( ⁇ -GOS), ⁇ -galacto-oligosaccharides ( ⁇ -GOS), bovine milk oligosaccharides (BMOS) ( ⁇ -GOS), Vivinal GOS ( ⁇ -GOS), cellobiose, cellotriose, cellotetraose, human milk oligosaccharides (HMOs), soluble hydrolyzed wheat, soluble hydrolyzed oat and/or ⁇ -glucan hydrolysates containing cellobiose or cellotriose or cellotetraose, or a combination thereof.
- ⁇ -GOS pea galacto-oligosaccharides
- ⁇ -GOS soy galacto- oligosaccharides
- ⁇ -GOS ⁇ -galacto-oligosaccharides
- BMOS ⁇ -GOS
- Preferred HMOs include 2'-fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N-tetraose (LNT), 3'-sialyllactose (3SL), and/or 6'-sialyllactose (6SL), or a combination thereof.
- Particularly preferred HMOs include LNT, 2’FL, and/or LNnT, or a combination thereof.
- the composition as defined herein also comprises a lipid (c).
- Such a lipid (c) is selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, long chain fatty acids, or a mixture thereof.
- Preferred triglycerides include a triglyceride comprising butyrate, a triglyceride comprising butyrate and caprylate and a triglyceride comprising butyrate and oleate. More preferably, such a lipid (c) is selected from a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b.
- Triglycerides composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f.
- Short chain fatty acids that could be metabolized into ketone bodies; and/or g Short and/or medium chain fatty acids that could be metabolized into ketone bodies, preferably C4 and/or C8 fatty acids (such as butyric acid (C4:0) and/or caprylic acid (C8:0)). Any combination is possible, e.g.
- the composition defined herein comprises a triglyceride consisting of butyrate and caprylate. In one embodiment, the composition defined herein comprises a triglyceride consisting of butyrate and oleate.
- the probiotics are preferably contained in the composition as defined herein in an effective amount, preferably in an amount of between 103 cfu to 1012 cfu, typically in an amount of between 104 cfu to 1011 cfu per daily dose, preferably in an amount of between 105 cfu to 1010 cfu per daily dose, or 105 cfu to 109 cfu per daily dose, likewise preferably in an amount of between 106 cfu to 109 cfu per daily dose, 106 cfu to 108 cfu per daily dose or in an amount of 108 cfu to 1010 cfu per daily dose, more preferably around 107 cfu to 109 cfu per daily dose
- a preferred daily dose is around 108 total cfu per daily dose, 107 to 109 cfu per daily dose or 108 to 109 cfu per daily dose.
- the prebiotics are preferably contained in the composition as defined herein in an amount of between 0.1g to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- the lipids are preferably contained in the composition as defined herein in an amount of between 0.1 to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- the composition as defined herein may comprise a probiotic, a prebiotic and a lipid as defined above, wherein: (a) the probiotic bacterium is selected from at least one of the probiotic bacteria according to a. to k. as defined above, or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to any one of the genomic sequences of the probiotic bacteria according to a. to k.
- Lactobacillus johnsonii NCC 533 (CNCM I-1225)or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (SEQ ID NO: 1).
- the prebiotic is selected from ⁇ -galacto-oligosaccharides, raffinose, ⁇ -galacto- oligosaccharides, and cello-oligosaccharides, or a combination thereof, preferably selected from pea galacto-oligosaccharides (pea GOS, ⁇ -GOS), soy galacto-oligosaccharides (soy GOS, ⁇ -GOS), ⁇ -galacto-oligosaccharides ( ⁇ -GOS), bovine milk oligosaccharides (e.g.
- the lipid is selected from of a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, or a mixture thereof, further wherein in one aspect the triglyceride comprises butyrate and/or caprylate.
- the lipid is selected from: a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and g.
- TCFAs Triglycerides
- SMCFAs short and medium chain fatty acids
- TG Triglycerides
- TG composed of a mixture of butyrate and long chain fatty acids (such as a mixture of butyrate and oleate)
- the composition as defined herein is selected from of a food product, a food for special medical purposes (FSMP), a nutritional supplement, a dairy-based drink, a low-volume liquid supplement, a meal replacement beverage, and combinations thereof.
- FSMP food for special medical purposes
- a nutritional supplement such as butyric acid (C4:0) and/or caprylic acid (C8:0)
- a dairy-based drink such as butyric acid (C4:0) and/or caprylic acid (C8:0)
- TG Triglycerides
- the composition as defined herein is selected from of a food product, a food for special medical purposes (FSMP), a nutritional supplement, a dairy-based drink, a low-volume liquid supplement, a meal replacement beverage, and combinations thereof.
- FSMP food for special medical purposes
- a nutritional supplement such as butyric acid (C4:0) and/or caprylic acid (C8:0)
- a dairy-based drink such as butyric acid (C
- composition is thereby preferably used for the reduction of uremic toxins in cardiometabolic or neurodegenerative conditions and related comorbidities, for delaying the progression of such cardiometabolic or neurodegenerative conditions and comorbidities and/or for managing symptoms and syndrome associated with toxic effects of uremic solutes of such cardiometabolic or neurodegenerative conditions and related comorbidities.
- Cardiometabolic or neurodegenerative conditions and related comorbidities that can be treated by using the composition particularly concern the following cases: • treatment or prevention of Kidney disease, including chronic and acute; dialysis and pre- dialysis states of kidney disease; rare (kidney) diseases, genetic- and metabolic-induced (kidney) diseases; • treatment or prevention of Uremic syndrome, including protein energy wasting syndrome, bone-loss, hyper anorexia, fatigue, or inflammation; • delay of advanced kidney disease complication, including anemia, hyperphosphatemia, secondary hyperparathyroidism, bone disease, and neurological conditions; • delay of kidney disease comorbidities, including cardiovascular disease; • prevention of the risk or management of malnutrition; • delay of the progression of cardiometabolic disease; • prevention of the risk or management of cardiovascular disease and comorbidities such as diabetes; and/or • prevention of the risk or management of neurodegenerative and neurological conditions.
- Kidney disease including chronic and acute
- dialysis and pre- dialysis states of kidney disease including rare (kidney) diseases, genetic
- a method of treatment of cardiometabolic or neurodegenerative conditions as defined above preferably comprising as a first step (a) a step of preparing and providing a composition as discussed above comprising the specifically selected probiotic, the specifically selected prebiotic and the specifically selected lipid as defined above; and (b) administering such a composition to a patient in need thereof, typically suffering from an increase of uremic toxins, typically in the context of cardiometabolic or neurodegenerative conditions as defined herein.
- a kit (of parts) suitable for use in lowering and/or avoiding accumulation of uremic toxins in cardiometabolic or neurodegenerative conditions as defined herein comprising the composition as described herein, e.g.
- Figure description Figure 1 shows a graphical representation of the biochemical pathways for formation of some of the intestinal bacterially-derived uremic toxins and their precursors. In this example, the generation of such as urea (NH3), p-cresyl sulfate (PCS), indoxyl sulfate (IS) and trimethylamine-N-oxide (TMAO) are shown with corresponding enzymes in Enzyme Code (EC) numbers.
- urea urea
- PCS p-cresyl sulfate
- IS indoxyl sulfate
- TMAO trimethylamine-N-oxide
- Uremic toxins precursors such as p- cresol, indole and TMA are by-products of microbial metabolism of amino acids, such as Tryptophan, Tyrosine, Carnitine and Choline. These by-product metabolites are then further chemically modified in the liver where then they turn into uremic toxins, reaching the circulation and impacting target organs.
- Figure 2 shows a graphical representation for production and retention of uremic toxins in the body.
- Figure 2(A) demonstrates how microbiome dysbiosis may contribute to build-up of uremic toxins in the systemic circulation leading to exacerbation of symptoms, comorbidities and progression of the disease.
- FIG. 2(B) shows an exemplary selection of probiotic strains for the purposes of the composition disclosed herein and treatments.
- the probiotic strains were selected already in an in silico screening process to lack different genes and key bacterial enzymes involved in uremic toxin metabolism.
- Lactobacillus johnsonii NCC 533 proved to lack the most number of relevant enzymes for avoiding production of uremic toxins or avoiding accumulation of uremic toxins and to provide most optimal basis for the envisaged treatment.
- White cell enzymes not present; Gray cell: enzymes presence uncertain; Black cell: enzymes present.
- Tra Tyramine; Trp: tryptophan; Tyr: tyrosine; indole-3-pyruvate: IPA; IAM: indole-3-acetamide; IAN: indole-3-acetonitrile; 4-HPPA: 4-Hydroxyphenylpyruvic acid.
- Figure 4 shows growth profiles of Lactobacillus johnsonii NCC 533 with different carbohydrate sources (alpha-galacto-oligosaccharides, galactomannans & fructans, which requires alpha-galactosidase and beta-fructo-furanosidase as enzymes encoded by the probiotic) during a 48-hour incubation.
- carbohydrate sources alpha-galacto-oligosaccharides, galactomannans & fructans, which requires alpha-galactosidase and beta-fructo-furanosidase as enzymes encoded by the probiotic
- Lactobacillus johnsonii NCC 533 from top to bottom: soy GOS, pea GOS, Inulin, sFOS, PHGG, and Fenugreek).
- Growth tests using Lactobacillus johnsonii NCC 533 as a strain serve as examples only and can be applied to any of the further selected probiotics. Data were normalized with a negative control.
- Figure 5 shows growth profiles of Lactobacillus johnsonii NCC 533 with different carbohydrate sources (beta-galacto-oligosaccharides, which requires beta- galactosidase as enzymes encoded by the probiotic) during a 48-hour incubation.
- BMOs and Vivianal GOS lead to particularly efficient growth of Lactobacillus johnsonii NCC 533 (from top to bottom: BMOs and Vivinal® GOS).
- Growth tests using Lactobacillus johnsonii NCC 533 as a strain serve as examples only and can be applied to any of the further selected probiotics. Data were normalized with a negative control.
- Figure 6 shows growth profiles of Lactobacillus johnsonii NCC 533 with different carbohydrate sources (cellooligosaccarides, which requires glucan 1,4-beta- glucosidase, cellulases and licheninase as enzymes encoded by the probiotic) during a 48-hour incubation.
- Lactobacillus johnsonii NCC 533 closely followed by Cellotetraose, soluble hydrolyzed wheat and soluble hydrolyzed oat (from top to bottom: Cellobiose, Cellotriose, Cellotetraose, soluble hydrolyzed wheat and soluble hydrolyzed oat).
- Growth tests using Lactobacillus johnsonii NCC 533 as a strain serve as examples only and can be applied to any of the further selected probiotics.
- Figure 7 shows an overview of the in-vitro/ex-vivo experimental set-up to assess the difference in the microbiome profile between healthy and Chronic Kidney Disease (CKD) donors using Prodigest’s short-term single-stage colonic simulation technology.
- Figure 7(A) shows a sample schematic of the conditions and donor groups. For each donor group, two conditions ran in parallel: (1) standard condition consisting of basic nutrition food with minimal amino acid, mimicking amino acid content in low protein diet (2) AA spiked condition consisting of nutritional medium with a mixture of L-tryptophan, L-tyrosine, L-carnitine, choline and L-phenylalanine. The AA mixture was chosen as those are the substrates converted by the gut bacteria into uremic toxins and their precursors.
- standard condition consisting of basic nutrition food with minimal amino acid, mimicking amino acid content in low protein diet
- AA spiked condition consisting of nutritional medium with a mixture of L-tryptophan, L-tyrosine, L-carnitine, choline and
- AA concentration mimics the required amino acid intake for adult human per day.
- AA concentration mimics the required amino acid intake per day.
- a total of 9 healthy and 8 CKD donors were used in this example.
- the timeline for experiments and sample analyses are shown in Figure 7(B).
- Fecal microbiomes were inoculated in ProDigest’s short-term single stage colonic system at day 0. From day 1 to day 2, the system was fed with basic nutrition food with or without AA mixture. Standard group fed with basic nutritional feed and AA spiked group fed with basic nutritional feed plus amino acid mixture. Samples were taken at different time points to measure overall fermentative activity, microbial community activity and microbiome community composition.
- Microbial community activity ⁇ Lactate ⁇ Short-chain fatty acids (SCFA): butyrate, propionate, acetate ⁇ Markers of proteolytic activity: ammonium and branced SCFA (isobutyric acid, isovaleric acid and isocaprioic acid) ⁇ Uremeic toxins & precursors: p-cresol, p.cresylsulfate, indole, indole- 3-3acetic acid, betaine, trimethylamine, trimethylamine-N-oxide, indoxyl, indoxyl sulfate, semialdehyde glutaric acid, uric acid, urea (3) Microbial community composition: quantitative deep shotgun sequencing Figure 8: shows an example of the difference in the microbiome metabolic capacity of the microbiome from Chronic Kidney Disease (CKD) patients and healthy donors.
- CKD Chronic Kidney Disease
- CKD microbiome After 48-hour incubation in Prodigest’s short-term single-stage colonic simulation system, CKD microbiome showed higher production of uremic toxin precursors, such as p-cresol, than healthy microbiome especially in the presence of excess amino acid substrates ( Figure 8(A)), suggesting a dysregulated amino acid metabolism of CKD microbiome. Moreover, CKD microbiome showed increased production of branched-chain fatty acids (BCFA) compared to healthy microbiome ( Figure 8(B)), suggesting higher proteolytic activity by CKD microbiome. As expected, byproducts of protein metabolism, such as BCFA, are not affected by excess amino acid substrates. Data represents the mean ⁇ SEM.
- Figure 9 shows an overview of the in-vitro/ex-vivo experimental set-up using a modified Prodigest’s SHIME® technology to assess the impact of the new nutritional/symbiotic ingredients on CKD microbiome and the fecal microbiota from patients with Chronic Kidney Disease (CKD).
- CKD Chronic Kidney Disease
- FIG 9(A) a sample schematic of the modified SHIME® system, consisting of UpperGIT vessel, which serves as stomach and small intestine, and colon vessel, which represents the transversal colon are shown in Figure 9(A).
- three conditions consisting of 2 treatment groups and 1 control group, ran in parallel.
- CKD Chronic Kidney Disease
- Sample experimental timeline and sample analysis are depicted in Figure 9(B).
- Fecal microbiomes from CKD donors were inoculated in ProDigest’s SHIME system at day 0. From day 1 to day 10, the system was fed with basic nutrition food (with minimal amino acid, mimicking amino acid content in a low protein diet), with or without the nutritional/symbiotic blend interventions.
- two nutritional/symbiotic blend combinations P1 and P2 were tested.
- P1 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- the system was further challenged with additional amino acid (AA) mixture containing L- tryptophan, L-tyrosine, L-carnitine, choline and L-phenylalanine.
- AA amino acid
- the AA mixture was chosen as those are the substrates converted by the gut bacteria into uremic toxins and their precursors.
- AA concentrations were formulated to mimic the required amino acid intake for adult humans per day.
- interventions labeled P1 and P2 significantly reduced the increased production of clinically relevant uremic toxin precursors by the CKD microbiome compared to the untreated control.
- Indole (A), p-cresol (B) and trimethylamine (C) are by- products of amino acid metabolism by the gut microbiota; thus, it follows that there is higher production in conditions where additional amino acid substrates are available.
- the interventions were effective in conditions with normal and minimal amino acid levels, thus suggesting the broad potential benefits of the intervention to CKD patients with different dietary requirements, such as low to high-protein diets.
- P1 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose and short-medium-chain triglycerides containing butyrate and caprylate while P2 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea galacto-oligosaccharides and short-medium-chain triglycerides containing butyrate and caprylate.
- Control represents CKD microbiome that was left untreated. Data represents the mean ⁇ SEM. *p ⁇ 0.05 by Student t-Test.
- Figure 11 shows an example of the impact of the new nutritional or symbiotic blend on production of microbiota-derived uremic toxins in-vitro/ex-vivo by the fecal microbiota from patients with Chronic Kidney Disease (CKD).
- interventions labeled P1 and P2 significantly reduced the increased urea production by the CKD microbiome compared to the untreated control.
- Urea is a by-product of protein metabolism; thus, it follows that there is little impact on urea levels after the supplementation of additional amino acid.
- P1 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose and short-medium-chain triglycerides containing butyrate and caprylate while P2 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea galacto-oligosaccharides and short-medium-chain triglycerides containing butyrate and caprylate. Control represents CKD microbiome that was left untreated.
- Figure 12 shows the impact of the new nutritional or symbiotic blend on protein dysmetabolism by CKD microbiota from patients with Chronic Kidney Disease (CKD) in-vitro/ex-vivo.
- CKD microbiome treated with P1 and P2 interventions showed significantly lower levels of branched chain fatty acids (A) and ammonium (B), suggesting an improvement in overactive proteolytic activity that contributes to higher uremic toxin build-up.
- Proteolytic activity by gut microbiota is not significantly impacted by the supplementation of additional amino acid.
- P1 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose and short-medium-chain triglycerides containing butyrate and caprylate while P2 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea galacto-oligosaccharides and short-medium- chain triglycerides containing butyrate and caprylate. Control represents CKD microbiome that was left untreated.
- Figure 13 shows the impact of the new nutritional or symbiotic blend on saccharolytic activity and the production of microbiota-derived beneficial metabolites by the fecal microbiota from patients with Chronic Kidney Disease (CKD) in-vitro/ex-vivo, particularly on short-chain fatty acid (SCFA) production.
- the gut microbiota may affect host metabolic health through microbial metabolites.
- the balance between producing microbial metabolites by saccharolytic and proteolytic fermentation may be an important determinant of metabolic health.
- SCFA short-chain fatty acids
- B propionate
- C butyrate
- SCFA have been shown to have multiple benefits to the host including but not exhaustive to the improvement of intestinal epithelial barrier function and inflammation.
- Increased gut permeability has been suggested to contribute to the increased availability of gut- derived uremic toxins and precursors in systemic circulation.
- P1 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose and short-medium-chain triglycerides containing butyrate and caprylate while P2 intervention consisted of treating CKD microbiota with an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea galacto-oligosacharrides and short-medium-chain triglycerides containing butyrate and caprylate.
- Control represents CKD microbiome that was left untreated. Data represents the mean ⁇ SEM. *p ⁇ 0.05 by Student t-Test.
- Figure 14 shows an overview of the animal experimental set-up to assess the impact of the new nutritional or symbiotic ingredients on uremic toxin production and chronic kidney disease (CKD) progression.
- the animal model that was used is the 5/6 nephrectomy animal model, which is one of the gold-standard and most frequently used rodent model in CKD research, including renal pharmaceutical research. Kidneys were ablated during 2-step surgery procedure to reduce kidney function (reminiscent of human CKD stage 3b and above). Additional animals were sham- operated and served as non-CKD animal control. From week 3 to week 10, the CKD animals were fed a diet with or without the nutritional or symbiotic blend interventions. In this example, two nutritional or symbiotic blend combinations (P1 and P2) were tested.
- P1 and P2 two nutritional or symbiotic blend combinations
- P1 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- metabolic parameters were evaluated including glucose tolerance test was performed.
- mice were placed in metabolic cages to collect urine for uremic toxin and kidney parameter analysis.
- the mice were sacrificed and different tissues were collected for subsequent analysis.
- Tissue collection plasma & serum, urine, liver heart, eWAT, scWAT, gastrocnemius muscle, soleus muscle, kidney all intestinal segments, caecum. Throughout the study, the physiological, behavioral and intake of food and water were monitored. Endpoint Analysis • Blood and urine concentrations of uremic toxins (e.g. urea, indoxyl sulfate, p-cresyl sulfate, TMAO, uric acid, CMPF, IAA, PCG) • Assessment of kidney function - blood and urine renal markers (e.g.
- CKD group represents animals with CKD, reminiscent of human CKD Stage 3b and above
- P1 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, Pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- CKD animals treated with P1 and P2 interventions for 7 weeks showed significantly lower levels of plasma uremic toxins, such as p-cresyl sulfate (PCS) (A), indoxyl sulfate (IS) (B), P-cresylglucuronide (PCG) (C), Indole acetic acid (IAA) (D), 3-Carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) (E) and uric acid (F) compared to untreated CKD animals.
- PCS p-cresyl sulfate
- IS indoxyl sulfate
- PCG P-cresylglucuronide
- IAA Indole acetic acid
- CMPF 3-Carboxy-4-methyl-5-propyl-2-furanpropionate
- F uric acid
- Figure 16 shows the impact of the new nutritional or symbiotic blend on kidney parameters/markers of kidney function in an animal model of Chronic Kidney Disease (CKD). Sham group represents non-CKD animals, reminiscent of healthy individuals without CKD. CKD group represents animals with CKD, reminiscent of human CKD Stage 3b and above.
- P1 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, Pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- animals that underwent nephrectomy showed impaired kidney function demonstrated by increased (A) proteinuria, demonstrated by higher protein-to-creatinine ratio in the urine, and (B) increased concentration of urea in the plasma compared to non-CKD control animals (sham group, reminiscent of healthy individuals without CKD disease).
- CKD animals treated with P1 and P2 interventions for 7 weeks showed significantly better proteinuria and plasma urea levels compared to non-treated CKD animals.
- each data point represents 2 animals whereas for urea levels, each data points represent 1 animal. Line represents the mean. Multiple comparison was performed using ANOVA followed by uncorrected Fisher’s LSD. *p ⁇ 0.05, **p ⁇ 0.01, ***p ⁇ 0.001.
- Figure 17 shows the impact of the new nutritional or symbiotic blend on kidney histology in an animal model of Chronic Kidney Disease (CKD). Sham group represents non- CKD animals, reminiscent of healthy individuals without CKD.
- CKD Chronic Kidney Disease
- CKD group represents animals with CKD, reminiscent of human CKD Stage 3b and above.
- P1 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, Pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- kidney of the animals that underwent nephrectomy showed microscopic damages, characterized by increased fibrosis (A) and impaired glomerular size (B) and volume (C), compared to non-CKD control animals (sham group, reminiscent of healthy individuals without CKD disease).
- CKD animals treated with P1 and P2 interventions for 7 weeks showed reduced fibrosis and glomerular size and volume.
- the data supports the benefits of the invention in reducing kidney microscopic damages, and thus may be useful to help in preventing the vicious cycle of uremic toxin build-up and in slowing down the progression of kidney damage and related clinical outcomes. Each data points represent 1 animal. Multiple comparison was performed using ANOVA followed by uncorrected Fisher’s LSD.
- HES Haemotoxylin and Eosin Staining.
- Figure 18 shows the impact of the new nutritional or symbiotic blend on (A) body weight evolution, (B) food intake and energy reserve wasting/ protein energy wasting in animal model of Chronic Kidney Disease (CKD) disease.
- CKD Chronic Kidney Disease
- CKD group represents animals with CKD, reminiscent of human CKD Stage 3b and above
- sham group pronounced of healthy individuals without CKD disease
- C CKD animals further showed significantly reduced epididymal white adipose tissues (eWAT), suggesting reduced energy reserves reminiscent of what is seen in human CKD.
- CKD animals treated with the P1 and P2 intervention showed significantly improved body weight evolution and normalization of food intake to the same level as non-CKD sham animals.
- P1 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, Pea GOS, short- medium chain triglycerides containing butyrate and caprylate.
- CKD group represents animals with CKD, reminiscent of human CKD Stage3b and above
- impaired intestinal barrier demonstrated by lower protein expression of the tight junction occluding in the ileum, compared to non-CKD control animals (sham group, pronounced of healthy individuals without CKD disease).
- Tight junctions are specialized connection of two adjacent cell membranes, and in the case of gut lining, an important structure to prevent excessive translocation of gut-derived molecules, such as uremic toxin precursors, into the systemic circulation.
- CKD animals treated with P1 and P2 interventions for 7 weeks showed significantly higher protein expression of occludin compared to non-treated CKD animals.
- P1 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 group is CKD animals treated with the intervention consisting of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, Pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- the data supports the benefits of the invention in improving gut dysfunction, particularly those suffering with kidney impairments. Each data points represent 1 animal. Line represents the mean. Multiple comparison was performed using ANOVA followed by uncorrected Fisher’s LSD.
- Figure 20 shows the impact of the new nutritional or symbiotic blend on (A) urine albumin, (B) urine creatine, (C) urine protein (albumin) to creatine ratio, and (D) LOG urine protein (albumin) to creatine ratio at week 7 in a rat animal model of CKD.
- Figure 21 shows the plasma levels of (A) indoxyl sulfate (IS) and (B) p-cresyl sulfate (PCS) and (C) p-cresol glucuronide (PCG) in 5/6 Nx rats in the groups (from left to right) sham, 5/6 Vehicle, 5/6 Nx P3 intervention (intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533 108, cellobiose 0.3%, short- medium chain triglycerides containing butyrate and caprylate 0.3%), 5/6 Nx P1-rat intervention (indicated as “5/6 Nx P1” in Figure 21(A)-(C)) (P1-rat intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533108, cellobiose 1%, short-medium chain triglycerides containing butyrate and caprylate 1%) and 5/6 Nx Lisinopril 20 mg/
- “about,” “approximately” and “substantially” are understood to refer to numbers in a range of numerals, for example the range of -10% to +10% of the referenced number, preferably -5% to +5% of the referenced number, more preferably -1% to +1% of the referenced number, most preferably -0.1% to +0.1% of the referenced number. All numerical ranges herein should be understood to include all integers, whole or fractions, within the range. Moreover, these numerical ranges should be construed as providing support for a claim directed to any number or subset of numbers in that range.
- compositions disclosed herein may lack any element that is not specifically disclosed herein.
- a disclosure of an embodiment using the term “comprising” includes a disclosure of embodiments “consisting essentially of” and “consisting of” the components identified.
- a composition “consisting essentially of” contains at least 50 wt.% of the referenced components, preferably at least 75 wt.% of the referenced components, more preferably at least 85 wt.% of the referenced components, most preferably at least 95 wt.% of the referenced components.
- X and/or Y should be interpreted as “X,” or “Y,” or “X and Y.” Similarly, “at least one of X or Y” should be interpreted as “X,” or “Y,” or “X and Y.”
- example and “such as,” particularly when followed by a listing of terms, are merely exemplary and illustrative and should not be deemed to be exclusive or comprehensive.
- a condition “associated with” or “linked with” another condition means the conditions occur concurrently, preferably means that the conditions are caused by the same underlying condition, and most preferably means that one of the identified conditions is caused by the other identified condition.
- the terms “food,” “food product” and “food composition” mean a product or composition that is intended for ingestion by an individual such as a human and provides at least one nutrient to the individual.
- a food product typically includes at least one of a protein, a lipid, a carbohydrate and optionally includes one or more vitamins and minerals.
- the compositions of the present disclosure can comprise, consist of, or consist essentially of the elements disclosed herein, as well as any additional or optional ingredients, components, or elements described herein or otherwise useful in a diet. “Prevention” includes reduction of risk and/or severity of a condition or disorder.
- treatment include both prophylactic or preventive treatment (that prevent and/or slow the development of a targeted pathologic condition or disorder) and curative, therapeutic or disease-modifying treatment, including therapeutic measures that cure, slow down, lessen symptoms of and/or halt progression of a diagnosed pathologic condition or disorder; and treatment of patients at risk of contracting a disease or suspected to have contracted a disease, as well as patients who are ill or have been diagnosed as suffering from a disease or medical condition.
- the term does not necessarily imply that a subject is treated until total recovery.
- treatment and “treat” also refer to the maintenance and/or promotion of health in an individual not suffering from a disease but who may be susceptible to the development of an unhealthy condition.
- treatment are also intended to include the potentiation or otherwise enhancement of one or more primary prophylactic or therapeutic measure.
- treatment also intended to include the dietary management of a disease or condition or the dietary management for prophylaxis or prevention a disease or condition.
- a treatment can be patient- or doctor-related.
- unit dosage form refers to physically discrete units suitable as unitary dosages for human and animal subjects, each unit containing a predetermined quantity of the composition disclosed herein in an amount sufficient to produce the desired effect, in association with a pharmaceutically acceptable diluent, carrier or vehicle.
- a “subject” or “individual” is a mammal, preferably a human.
- the term “elderly” in the context of a human means an age from birth of at least 60 years, preferably above 63 years, more preferably above 65 years, and most preferably above 70 years.
- the term “older adult” in the context of a human means an age from birth of at least 45 years, preferably above 50 years, more preferably above 55 years, and includes elderly individuals.
- an “effective amount” is an amount that prevents a deficiency, treats a disease or medical condition in an individual, or, more generally, reduces symptoms, manages progression of the disease, or provides a nutritional, physiological, or medical benefit to the individual.
- the relative terms “improved,” “increased,” “enhanced” and the like refer to the effects of the composition disclosed herein, namely a composition comprising at least one probiotic bacteria, at least one prebiotic, and at least one lipid, all as defined herein.
- “promoting” refers to enhancing or inducing relative to the level before administration of the composition disclosed herein.
- probiotic bacteria means bacteria that are viable (live bacteria) and that provide health benefits when consumed, generally by improving or restoring the gut flora.
- the “probiotic bacteria” are preferably present in the composition in an effective amount.
- the manufacturing procedure of probiotic bacteria is typically standardized and involves a step of fermenting the bacteria in a growth medium comprising a carbohydrate source, such as a sugar, for example glucose, fructose, sucrose, lactose or dextrose. Following the fermentation, the probiotic bacteria are usually cryo-protected and frozen or freeze-dried and packaged into a finished product to be used in the composition.
- probiotic bacteria as used according to the invention are specifically selected in view of the requirements to lower uremic toxins and preferably to allow avoiding or lowering an accumulation of such uremic toxins in the circulation, the tissues and organs as already depicted above.
- prebiotic are typically to be understood to comprise non-digestible fiber compounds that pass undigested through the upper part of the gastrointestinal tract and stimulate the growth or activity of advantageous bacteria in the colon by acting as substrates for them.
- the prebiotics of the invention are specifically selected to allow stimulation of growth or activity of the “probiotic bacteria” as used according to the invention.
- the “prebiotics” are preferably present in the composition in an effective amount.
- the manufacturing procedure of probiotic bacteria is typically standardized and well known to a skilled person.
- ANI Average Nucleotide Identity
- ANI can be readily determined by the skilled person using common knowledge and available tools, which are well detailed in the literature. For example, ANI can be assessed as describe here: Yoon SH, Ha SM, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek.2017 Oct;110(10):1281- 1286.
- the term “cardiometabolic condition refers to any condition involving a spectrum of conditions that are related to or share risk factors, such as overweight and obesity, dyslipidemia, and high blood pressure.
- neurodegenerative condition refers to any condition involving progressive loss of functional neurons in the central nervous system.
- the neurodegenerative disease is associated with age-related cell death.
- Non-limiting examples of such neurodegenerative conditions include particularly, cardiometabolic or neurodegenerative conditions preferably concern the treatment or prevention of Kidney disease, including chronic and acute; dialysis and pre-dialysis; rare (kidney) diseases, genetic- and metabolic-induced (kidney) diseases; the treatment or prevention of Uremic syndrome, including protein energy wasting, bone-loss, hyper anorexia, fatigue, or inflammation; the delay of advanced kidney disease complication, including anemia, hyperphosphatemia, secondary hyperparathyroidism, bone disease, neurological conditions; the delay of kidney disease comorbidities, including cardiovascular disease; the prevention of the risk or management of malnutrition; the delay of the progression of cardiometabolic disease; the prevention of the risk or management of cardiovascular disease and comorbidities (diabetes); and/or the prevention of the risk or management
- “Sarcopenia” is defined as the age-associated loss of muscle mass and functionality (including muscle strength and gait speed).
- “frailty” is defined as a clinically recognizable state of increased vulnerability resulting from aging-associated decline in reserve and function across multiple physiologic systems such that the ability to cope with everyday or acute stressors is compromised. In the absence of an established quantitative standard, frailty has been operationally defined by Fried et al.
- Cachexia is a severe body wasting condition characterized by marked weight loss, anorexia, asthenia, and anaemia. Cachexia is a common feature of a number of illnesses, such as cancer, sepsis, chronic heart failure, rheumatoid arthritis, and acquired immune deficiency syndrome (AIDS).
- Weight loss is defined for a human as a body mass index (BMI) between 25 and 30 kg/m2.
- BMI body mass index
- Ole is defined for a human as a BMI of at least 30 kg/m2, for example 30-39.9 kg/m2.
- Weight loss is a reduction of the total body weight. Weight loss may, for example, refer to the loss of total body mass in an effort to improve one or more of health, fitness or appearance.
- Diabetes encompasses both the type I and type II forms of the disease.
- Non-limiting examples of risk factors for diabetes include: waistline of more than 40 inches for men or 35 inches for women, blood pressure of 130/85 mmHg or higher, triglycerides above 150 mg/dl, fasting blood glucose greater than 100 mg/dl or high-density lipoprotein of less than 40 mg/dl in men or 50 mg/dl in women.
- the term “metabolic syndrome” refers to a combination of medical disorders that, when occurring together, increase the risk of developing cardiovascular disease and diabetes. It affects one in five people in the United States and prevalence increases with age. Some studies have shown the prevalence in the United States to be an estimated 25% of the population.
- metabolic syndrome is central obesity plus any two of the following: Raised triglycerides: > 150 mg/dL (1.7 mmol/L), or specific treatment for this lipid abnormality; Reduced HDL cholesterol: ⁇ 40 mg/dL (1.03 mmol/L) in males, ⁇ 50 mg/dL (1.29 mmol/L) in females, or specific treatment for this lipid abnormality; Raised blood pressure: systolic BP > 130 or diastolic BP >85 mm Hg, or treatment of previously diagnosed hypertension; and Raised fasting plasma glucose: (FPG) > 100 mg/dL (5.6 mmol/L), or previously diagnosed type 2 diabetes.
- Raised triglycerides > 150 mg/dL (1.7 mmol/L), or specific treatment for this lipid abnormality
- Reduced HDL cholesterol ⁇ 40 mg/dL (1.03 mmol/L) in males, ⁇ 50 mg/dL (1.29 mmol/L) in females, or specific
- Embodiments The present disclosure provides according to the first embodiment, a composition, preferably suitable for use in lowering and/or avoiding accumulation of uremic toxins, preferably in cardiometabolic or neurodegenerative conditions, comprising a specifically selected prebiotic, a specifically selected probiotic and a specifically selected lipid as defined herein.
- the composition provides particular health benefits to a patient to be treated. Such a patient is typically a patient suffering from a cardiometabolic or neurodegenerative condition and is typically experiencing or at least being at the risk of experiencing an increase in and accumulation of uremic toxins.
- the health benefits, that can be advantageously provided to such a patient by administering the composition is preferably a delay in the progression of disease and comorbidities, and furthermore the possibility to manage symptoms and syndromes associated with toxic effects of such uremic solutes, both typically by lowering the amount of uremic toxins in such a patient, that otherwise would be accumulated in the patient.
- uremic toxins within the context of the invention are typically selected from, but not limited to, urea, trimethylamine (TMA), Triethylamineoxide (TMAO), indoxyl and indoxyl sulfate, p-cresol and p-cresol sulfate, p-cresylglucorinade, uric acid, 3-Carboxy-4-methyl-5- propyl-2-furanpropionate (CMPF), etc. and all metabolic compounds or precursors thereof (confer e.g. to Figure 1).
- TMA trimethylamine
- TMAO Triethylamineoxide
- CMPF 3-Carboxy-4-methyl-5- propyl-2-furanpropionate
- uremic toxins mainly have their origin in the provision of either an excess in amino acids to a patient, such as tryptophan or tyrosine, increased amounts of L-carnitine or choline, and increased amounts of urea.
- An accumulation of such systemic uremic toxins is a condition often observed in individuals with cardiometabolic and neurological conditions, including but not limited to chronic kidney disease (CKD), and diseases and conditions as described herein above.
- CKD chronic kidney disease
- a composition representing a new nutritional blend and/or symbiotic blend that allows targeting multiple direct and indirect mechanisms that could contribute to the beneficial reduction of the generation and/or the accumulation of such uremic toxins, particularly by applying a composition representing preferably a specific blend composed of • specifically selected probiotics as defined herein (e.g. L.
- johnsonii NCC 533) • specifically selected prebiotics as defined herein, preferably fibers and oligosaccharides, as defined herein (e.g. cellobiose and pea GOS, etc.) • specifically selected lipids as defined herein, preferably triglycerides composed of short & medium chain fatty acids, as defined herein;
- the composition e.g. in form of a nutritional blend and/or symbiotic blend, positively targets and improves the microbiome (function), the gut function, the liver metabolism and provides mechanisms to stabilize the kidney function and helps lowering the systemic occurrence and amount of uremic toxins.
- the microbiome (function) can be improved thereby as follows:
- the microbiome usually contributes to the production of certain metabolites, which form precursors for uremic toxins. When such metabolites are available in the body tissues, particularly liver and circulation, they could be converted into uremic toxins.
- patients with kidney disease have been shown to have dysbiosis, which is characterized by an impaired microbiome function to convert certain amino acids from dietary proteins into uremic toxin precursor metabolites. Thereby, administration of the composition improves excess availability of uremic toxins precursors in the circulation by improving dysbiosis, particularly microbiota function.
- the imbalance of the microbiome is improved, thereby allowing to also improve the metabolic processing of such uremic toxin precursor metabolites.
- the composition furthermore advantageously allows also increasing or improving the gut function.
- patients with cardiometabolic diseases, particularly kidney diseases may have an impaired gut function including impaired gut motility, gut epithelial barrier function and increased inflammation, which could contribute to dysregulated gut accumulation and increased permeability across the gut barrier of uremic toxin precursors.
- the composition thereby improves the availability of uremic toxin precursors in the systemic circulation by improving gut motility and epithelial barrier function and thereby significantly contributes to an avoidance of accumulation of such uremic toxins in the tissue and organs, particularly the kidneys.
- the composition also provides significant benefits on liver metabolism.
- the liver is an integral tissue responsible in producing uremic toxins. Thereby, liver enzymes use substrate coming from endogenous source or other tissues, diet and gut microbiota to produce such uremic toxins.
- the composition allows improving metabolism leading to uremic toxins conversion by specific preselection of probiotics as well as of prebiotics and lipids to be administered, especially when substrate availabilities are in excess.
- the composition also provides significant benefits on the stabilization of kidney function.
- the kidney is able to filter out the uremic toxins and thereby to lower or avoid an accumulation of uremic toxins in blood circulation.
- uremic toxins can accumulate and initiate or contribute to a vicious disease loop cycle of exacerbation and progression, including further induction of dysbiosis or liver or gut impairments.
- the composition thereby allows for stabilizing kidney function and preventing a further decline.
- the composition therefore directly improves uremic toxin accumulation and indirectly improves uremic toxins production.
- the invention is therefore based on a novel combination of specifically selected probiotics, specifically selected prebiotics, and specifically selected lipids, which in combination symbiotically allows improving levels of and avoiding accumulation of uremic toxins (e.g. indoxyl sulfate, p-cresyl sulfate, PCG, CMPF, uric acid) in different cardiometabolic (e.g. kidney diseases) and neurodegenerative conditions.
- uremic toxins e.g. indoxyl sulfate, p-cresyl sulfate, PCG, CMPF, uric acid
- such an avoidance of the accumulation of uremic toxins particularly concerns compounds urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, betaine, PCG, CMPF, glutarate and/or other protein-bound uremic toxin, preferably indoxyl sulfate, p-cresyl sulfate, MCPF, PCG, urea and/or uric acid. Measurement of such compounds in the tissues, organs and body fluids is well known to a skilled person.
- compositions which comprise all of the herein required ingredients, namely the specifically selected prebiotics, the specifically selected prebiotics and the specifically selected lipids, do not only allow addressing isolated aspects, such as dysbiosis or improvement of microbiome function but represents a holistic approach to mitigate multiple targets known to contribute in both production and accumulation of uremic toxins, particularly to improve the microbiome (function), the gut function, the liver metabolism and provides mechanisms to stabilize the kidney function and to help lowering the systemic occurrence and amount of uremic toxins, preferably in cardiometabolic or neurodegenerative conditions as defined herein.
- the composition comprises probiotics as already defined above. Probiotics are considered as defined herein as live bacteria that contribute beneficially to gut and microbiome function.
- the probiotic bacteria of the composition provide a significant impact on this treatment and are selected according to the following three criteria, which may be applied separately or in combination, preferably in combination.
- such probiotic bacteria are selected from at least one of those probiotic bacteria lacking at least one bacterial enzymes to produce urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, betaine and/or glutarate.
- the lack of at least one bacterial enzyme as depicted above is typically achieved by a corresponding partial or complete lack or at least inactivation of the genetic coding sequence for such an enzyme in the genome of the probiotic bacterium, leading to a lack of expression of such an enzyme in vivo. If multiple copies of the bacterial enzyme are encoded by the genomic sequence, only a part or all, preferably all coding sequences of the bacterial enzyme are lacking or at least inactive. The avoidance of the expression of such enzymes that are required to produce such uremic toxins allows lowering the otherwise possibly too high increase and load of uremic toxins in the body, tissue and organs, that potentially leads to a non-reversible accumulation of such toxins.
- probiotic bacteria are bacteria generally considered beneficial in the gut health system, it was surprising for the inventors to recognize that uremic toxins can be efficiently lowered or at least limited by selecting a specific type of probiotics, prebiotics and lipids in a symbiotic manner.
- the probiotic bacteria used in the composition are particularly selected for certain properties, such as probiotic bacteria lacking specific bacterial enzymes that might contribute to an excess increase of uremic toxins (1st and 2nd alternative below) and/or that contribute to an improved growth of the probiotic bacteria by promoting expression of particular enzymes beneficial for processing specific prebiotics (fibers and carbohydrates).
- such probiotic bacteria are selected from at least one probiotic bacterium lacking at least one bacterial enzyme selected from urease, carnitine monooxygenase & reductase, tryptophanase, hydroxyphenylacetate.
- Such enzymes may be preferably selected from one of the following classes of enzymes: EC1.14.13.239, EC: 1.14.12.17, EC: 1.14.13.25, EC: 1.14.99.-, EC: 1.3.3.4 , EC: 1.3.8.2, EC: 1.3.98.1, EC: 1.4.1.13, EC: 1.4.1.14, EC: 1.4.3.2, EC: 2.1.1.12, EC: 2.3.1.54, EC: 2.6.1.-, EC: 2.6.1.1, EC: 2.6.1.2, EC: 2.6.1.2 , EC: 2.6.1.4, EC: 2.6.1.44, EC: 2.6.1.5, EC: 2.6.1.57, EC 2.6.1.58, EC: 2.6.1.78, EC: 2.6.1.79, EC: 2.6.1.9 , EC: 3.2.1.172, EC: 3.5.1.111, EC: 3.5.1.3, EC: 3.5.1.4, EC: 3.5.5.1, EC:
- the bacterial enzyme If multiple copies of the bacterial enzyme are encoded by the genomic sequence, only a part or all, preferably all coding sequences of the bacterial enzyme are lacking or at least inactive. Furthermore, the lack at least one bacterial enzymes urease, carnitine monooxygenase & reductase, tryptophanase, hydroxyphenylacetate efficiently contributes to an avoidance of the further accumulation of uremic toxins that otherwise would be provided in excess and further accumulated in the body, tissues and organs of a patient above tolerable levels.
- probiotic bacteria are preferably selected according to a third criterion from at least one probiotic bacteria possessing at least one of the following bacterial carbohydrate enzymes: ⁇ -galactosidase, ⁇ -galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ - fructofuranosidase and/or Licheninase.
- Such enzymes may be selected from one of the following classes of enzymes: EC3.2.1.22, EC3.2.1.23, EC3.2.1.74, EC 3.2.1.4, EC 3.2.1.26, EC 3.2.1.58, EC 3.2.1.73, EC 2.4.1.9, EC 3.2.1.84, EC 3.2.1.33, EC 3.2.1.70, EC 3.2.1.135, EC 3.2.1.3, EC 3.2.1.20, EC 3.2.1.10
- Expressing at least one of these bacterial carbohydrate enzymes via the specifically selected probiotics particularly contributes to a processing the herein administered prebiotics, which symbiotically (in view of the selections for the probiotics and the prebiotics) supports growth of the administered probiotics, improvement of microbiome and gut functions as well as liver metabolism and stabilization of kidney function, and thereby lowering of and/or avoidance of accumulation of uremic toxins.
- the probiotic bacterium of the composition meets at least one, preferably at least two, more preferably at least three, or all, of the above mentioned criteria for inventive probiotics.
- a probiotic bacterium according to any of such criteria, preferably meeting all three criteria may be preferably selected from the following species Bifidobacterium animalis subspecies lactis, Bifidobacterium longum subspecies infantis, Bifidobacterium longum subspecies longum, Enterococcus faecium, Lactobacillus johnsonii, Lactococcus lactis, Lacticaseibacillus paracasei (previously classified as Lactobacillus paracasei), Limosilactobacillus reuteri (previously classified as Lactobacillus reuteri), Lacticaseibacillus rhamnosus (previously classified as Lactobacillus rhamnosus), Staphylococcus carnosus and/or Strepto
- such a probiotic bacterium preferably meeting all three criteria may be selected from any of the following strains: a. Bifidobacterium animalis subspecies lactis NCC 2818, which was deposited on 07 June 2005 with CNCM and assigned accession number CNCM I-3446; b. Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T) - which is available from worldwideweb.atcc.org/products/15697]); c. Bifidobacterium longum subspecies longum NCC 2705 (CNCM I-2618?
- NCBI refseq GCA_000007525.1 [NCC 2075 was deposited on 29 January 2001 with CNCM and assigned accession number CNCM I-2618]; d. Enterococcus faecium NCC 2768 (NCIMB 10415 which is available from Cerbios-Pharma SA Barbengo Switzerland (cerbios.swiss/e-faecium-sf68-a-model-for-efficacy-safety-for- pharmaceutical-probiotics/); e.
- Lactobacillus johnsonii NCC 533 [originally known as La 1 which was deposited on 30 June 1992 with CNCM and assigned accession number CNCM I-1225)(see also NCBI refseq; GCA_000008065.1, and GenBank AE017198.1 (included as SEQ ID NO: 1))]; f. Lactococcus lactis NCC 2287 (CNCM I-4154) [NCC 2287 was deposited on 24 April 2009 with CNCM and assigned accession number CNCM I-4154]; g. Lacticaseibacillus paracasei NCC 2461(CNCM I-2116) [NCC 2461 was deposited on 12 January 1999 with CNCM and assigned accession number CNCM I-2116]; h.
- Lacticaseibacillus rhamnosus NCC 4007 (CGMCC 1.3724) [NCC 4007 was deposited in October 2004 with identification number CGMCC 1.3724 with CGMCC [China General Microbiological Culture Collection Center (CGMCC) Institute of Microbiology, Chinese Academy of Sciences, P.O. Box 2714, Beijing 100080, China]; i. Staphylococcus carnosus NCC 1052 (CNCM I-5400) [NCC 1052 was deposited on 01 February 2019 with CNCM and assigned accession number CNCM I-5400]; j.
- Staphylococcus carnosus NCC 971 (CNCM I-5398) [NCC 971 was deposited with CNCM on 01 February 2019 and assigned accession number CNCM I-5398]; and/or; k. Streptococcus thermophilus NCC 2496 (CNCM I-3915) [NCC 2496 was deposited with CNCM on 05 February 2008 and assigned accession number CNCM I-3915]; or a probiotic bacterium having a genome that has at least 95% Average Nucleotide Identity (ANI), preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99%ANI or even 99.5% ANI or 99.9% ANI to the respective genomic sequences according to any one of a.
- ANI Average Nucleotide Identity
- the probiotic bacteria of the composition as defined herein is selected from Lactobacillus johnsonii NCC 533 (CNCM I-1225) or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANIor even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225).
- the NCBI reference sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) is GCA_000008065.1 (SEQ ID NO: 1).
- an “effective amount” of a “probiotic bacteria” as defined herein may comprise such a probiotic bacteria typically in an amount of between 103 cfu to 1012 cfu, typically in an amount of between 104 cfu to 1011 cfu per daily dose, preferably in an amount of between 105 cfu to 1010 cfu per daily dose, or 105 cfu to 109 cfu per daily dose, likewise preferably in an amount of between 106 cfu to 109 cfu per daily dose, 106 cfu to 108 cfu per daily dose or in an amount of 108 cfu to 1010 cfu per daily dose, more preferably around 107 cfu to 109 cfu per daily dose.
- a preferred daily dose is around 108 total cfu per daily dose, 107 to 109 cfu per daily dose or 108 to 109 cfu per daily dose.
- a daily dose may thereby be achieved by a single administration of the composition per day or by multiple administrations of the composition, e.g. by two, three, four or five administrations, preferably not more than 1 to 5, more preferably not more than 1 to 4, even more preferably not more than 1 to 3 administrations.
- the daily dose is achieved by a single administration, or 1-5 administrations of the composition per day the amounts per composition are recalculated based on the required daily dose.
- any administration or respective composition comprises the same amount of ingredients and hence probiotics, prebiotics and lipids, and preferably also the same volume.
- the composition as defined herein also comprises a prebiotic as already defined generally above.
- Such a prebiotic is selected from carbohydrates, preferably fibers and oligosaccharides, wherein the carbohydrate can be hydrolyzed by at least one bacterial enzyme selected from ⁇ -galactosidase, ⁇ -galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ -fructofuranosidase and/or Licheninase, preferably selected from EC 3.2.1.22, EC 3.2.1.23, EC 3.2.1.74, EC 3.2.1.4, EC 3.2.1.26, EC 3.2.1.58, EC 3.2.1.73, EC 2.4.1.9, EC 3.2.1.84, EC 3.2.1.33, EC 3.2.1.70, EC 3.2.1.135, EC 3.2.1.3, EC 3.2.1.20, EC 3.2.1.10.
- ⁇ -galacto-oligosaccharides / raffinose e.g. pea GOS, soy GOS
- ⁇ -galacto-oligosaccharides e.g. ⁇ -GOS, Vivinal GOS, bovine milk oligosaccharides (BMOS)
- BMOS bovine milk oligosaccharides
- HMOs human milk oligosaccharides
- COS cello-oligosaccharides
- the specific selection of the prebiotic in the composition symbiotically acts together with the specific selection of a probiotic bacteria of the composition as defined before.
- Such prebiotics are specific carbohydrates, preferably fibers and oligosaccharides, that preferably and beneficially support growth of the specifically selected probiotic bacteria.
- the specific carbohydrates act as substrates of the specifically selected probiotic bacteria and can be hydrolyzed by at least one bacterial enzyme selected from ⁇ -galactosidase, ⁇ -galactosidase, glucan 1,4- ⁇ -glucosidase, cellulase, ⁇ -fructofuranosidase and/or Licheninase, produced by the probiotic bacteria of the composition as defined before due to the specific selection of the probiotic bacteria.
- the prebiotics are preferably contained in the composition as defined herein in an effective amount.
- such an effective amount of prebiotics preferably contained in the composition as defined herein is an amount of between 0.1g to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- the composition comprises in addition to the specifically selected probiotics and the specifically selected prebiotics as depicted before also specifically selected lipids.
- lipids comprise at least one lipid selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, long chain fatty acids, or a mixture thereof.
- Preferred triglycerides include a triglyceride comprising butyrate and/or caprylate, a triglyceride consisting of butyrate and caprylate, a triglyceride consisting of butyrate and oleate.
- the triglyceride consists of butyrate and caprylate.
- short chain triglycerides are preferably understood as triglycerides with two or three fatty acids each having 1 to 5 carbon atoms, preferably having 2 to 5 carbon atoms. Such fatty acids having 1 to 5 carbon atoms, preferably 2 to 5 carbon atoms, are generally understood herein as short chain fatty acids (SCFAs).
- SCFAs short chain fatty acids
- a particularly preferred short chain fatty acid is a C4 fatty acid, most preferably butyric acid (C4:0).
- a short chain triglyceride comprising butyric acid is preferably an SCT that comprises at least one, two or even three butyric acids.
- MCTs medium chain triglycerides
- MCFAs medium chain fatty acids
- a preferred short chain fatty acid is C8 fatty acid, such as. caprylic acid (C8:0).
- a medium chain triglyceride comprising caprylic acid may be an MCT that comprises at least one, at least two or even three caprylic acids.
- a triglyceride comprising a mixture of butyrate and long chain fatty acids
- it is preferably understood as a triglyceride with one or two butyrate moieties and one or two long chain fatty acids.
- a long chain fatty acid is generally understood to be a fatty acid is a fatty acid having 13 to 21 carbon atoms.
- Exemplary triglycerides comprising butyrate and a long chain fatty acid include 1,3-dibutyryl-2- linoleoylglycerol, 1,3-dibutyryl-2-stearoylglycerol, 1- butyryl-2-oleoyl-3-palmitoylglycerol, 1-palmitoyl-2-oleoyl-3-butyrylglycerol, 1-butyryl-2- oleoyl-3-linoleoylglycerol, 1-linoleoyl-2-oleoyl- 3-butyrylglycerol, 1-oleoyl-2-butyryl-3- linoleoylglycerol, 1-linoleoyl-2-butyryl-3-oleoylglycerol, 1-linoleoyl-2-butyryl-3-oleoylglycerol, 1-butyryl-2-linoleoyl-3-ole
- a preferred long chain fatty acid in the context of a triglyceride comprising a mixture of butyrate and a long chain fatty acid is oleic acid (C18:1). More preferably, a lipid in the context of the composition is selected from a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e.
- Triglycerides composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and/or g. Medium chain fatty acids that could be metabolized into ketone bodies, preferably C4 and/or C8 medium chain fatty acids (such as butyric acid (C4:0) and/or caprylic acid (C8:0)).
- Exemplary triglycerides in the context of the composition are a triglyceride comprising butyrate and/or caprylate, a triglyceride consisting of butyrate and caprylate, and a triglyceride consisting of butyrate and oleate.
- the triglyceride consists of butyrate and caprylate.
- Particularly preferred as lipid in the context of the composition are triglycerides comprising butyrate, short chain fatty acids, medium chain fatty acids, or a mixture thereof.
- Such a lipid may be therefore - a triglyceride, containing at least one short chain fatty acid C1-C5, preferably C2-C5; preferably a triglyceride, containing at least one butyric acid (C4:0), or a - triglyceride containing at least one medium chain fatty acid C6-C12, such as caprylic acid (C8:0), preferably a triglyceride, containing at least one caprylic acid (C8:0), or a - a triglyceride containing at least one short chain fatty acid C1-C5, preferably C2-C5, such as butyric acid (C4:0), and at least one medium chain fatty acid C6-C12, such as caprylic acid (C8:0), etc.
- the lipid in the context of the composition are triglycerides comprising either butyric acid (C4:0) (BBB, Tributyrin) or caprylic acid (C8:0) (CCC, Tricaprylin), preferably a mix of triglycerides comprising either butyric acid (C4:0) or caprylic acid (C8:0), or may be selected from triglycerides containing both butyric acid (C4:0) and caprylic acid (C8:0) in the same triglyceride.
- BBB butyric acid
- C8:0 caprylic acid
- CCC Tricaprylin
- triglycerides may be prepared by inter- esterification of a mix of triglycerides comprising either butyric acid (C4:0) or caprylic acid (C8:0).
- BBB butyric acid
- C4:0 caprylic acid
- BBB Tributyrin
- CCC Tricaprylin
- Neobee 895 available e.g. by Stepan Specialty
- Exemplary triglycerides comprising butyrate and a long chain fatty acid include 1,3-dibutyryl-2- linoleoylglycerol, 1,3-dibutyryl-2-stearoylglycerol, 1- butyryl-2-oleoyl-3-palmitoylglycerol, 1-palmitoyl-2-oleoyl-3-butyrylglycerol, 1-butyryl-2- oleoyl-3-linoleoylglycerol, 1-linoleoyl-2-oleoyl- 3-butyrylglycerol, 1-oleoyl-2-butyryl-3- linoleoylglycerol, 1-linoleoyl-2-butyryl-3-oleoylglycerol, 1-linoleoyl-2-butyryl-3-oleoylglycerol, 1-butyryl-2-linoleoyl-3-ole
- a preferred long chain fatty acid in the context of a triglyceride comprising a mixture of butyrate and a long chain fatty acid is oleic acid (C18:1).
- a preferred triglyceride composed of a mixture of short and long chain fatty acids is a triglyceride consisting of a mixture of butyrate and oleate.
- compositions comprising fatty acids that could be metabolized into ketone bodies, preferably C4 and/or C8 short and medium chain fatty acids, more preferably triglycerides comprising both butyric acid (C4:0) and caprylic acid (C8:0) in the same triglyceride; or triglycerides comprising either butyric acid (C4:0) or caprylic acid (C8:0) in the same triglyceride; or a mix of triglycerides, one triglyceride comprising butyric acid (C4:0) and one triglyceride comprising caprylic acid (C8:0).
- the lipid may also be selected from short chain fatty acids (SCFA) and medium chain fatty acids (MCFA), not a triglyceride.
- SCFA short chain fatty acids
- MCFA medium chain fatty acids
- Such a lipid may therefore be selected from at least one short chain fatty acid C1-C5, preferably C2-C5, more preferably butyric acid (C4:0), or may be selected from at least one medium chain fatty acid C6-C12, such as caprylic acid (C8:0), or may be selected from a mixture of at least one short chain fatty acid C1- C5, preferably C2-C5, such as butyric acid (C4:0), and at least one medium chain fatty acid C6- C12, such as caprylic acid (C8:0).
- the lipids are preferably contained in the composition as defined herein in an amount of between 0.1g to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- the composition as defined herein may comprise: (a) a probiotic bacteria, preferably selected from probiotic bacteria, - lacking a gene for producing at least one of urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, betaine and/or glutarate; - lacking at least one bacterial enzyme selected from urease, carnitine monooxygenase & reductase, tryptophanase and/or hydroxyphenylacetate; and/or - expressing at least one bacterial enzyme selected from ⁇ -galactosidase,
- pea GOS soy GOS
- ⁇ -galacto-oligosaccharides e.g. b-GOS, Vivinal GOS, bovine milk oligosaccharides (BMOS)
- human milk oligosaccharides HMOs
- 2’FL 2-fucosyllactose
- 3’FL 3-fucosyllactose
- lacto-N-neotetraose LNnT
- lacto-N- tetraose LNT
- 3SL 3'-sialyllactose (3SL), and/or 6'-sialyllactose (6SL)
- cello-oligosaccharides COS
- COS cello-oligosaccharides
- a lipid selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, or a mixture thereof, further wherein in one aspect the triglyceride comprises butyrate and/or caprylate.
- the composition as defined herein may comprise a probiotic bacterium, a prebiotic and a lipid as defined above, wherein: (a) the probiotic bacterium is selected from at least one of the probiotic bacteria according to a. to k. as defined below: a. Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); b. Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T)); c. Bifidobacterium longum subspecies longum NCC 2705 ( CNCM I-2618) (NCBI refseq; GCA_000007525.1); d.
- the probiotic bacterium is selected from at least one of the probiotic bacteria according to a. to k. as defined below: a. Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); b. Bifidobacterium longum subspecies infantis N
- Enterococcus faecium NCC 2768 NCIMB 10415; e. Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1); f. Lactococcus lactis NCC 2287 (CNCM I-4154); g. Lacticaseibacillus paracasei NCC 2461 (CNCM I-2116); h. Lacticaseibacillus rhamnosus NCC 4007 (CGMCC 1.3724); i. Staphylococcus carnosus NCC 1052 (CNCM I-5400); j. Staphylococcus carnosus NCC 971 (CNCM I-5398); and/or; k.
- Streptococcus thermophilus NCC 2496 (CNCM I-3915); or a probiotic bacterium having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to any one of the genomic sequences of the probiotic bacteria according to a. to k. as defined above; or a combination of one or more of the above described probiotic bacterium; (b) the prebiotic is selected from the family of ⁇ -galacto-oligosaccharides / raffinose (e.g.
- pea GOS soy GOS
- ⁇ -galacto-oligosaccharides e.g. ⁇ -GOS, Vivinal GOS, bovine milk oligosaccharides
- cello-oligosaccharides COS
- HMOs human milk oligosaccharides
- the lipid is selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, or a mixture thereof, further wherein in one aspect the triglyceride comprises butyrate and/or caprylate.
- the lipid is selected from: a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and/or g.
- TCFAs Triglycerides
- SMCFAs short and medium chain fatty acids
- TG Triglycerides
- TG composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of buty
- the composition as defined herein may comprise a probiotic, a prebiotic and a lipid as defined above, wherein: (a) the probiotic bacterium is selected from Lactobacillus johnsonii NCC 533 (CNCM I- 1225) or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (SEQ ID NO: 1).
- the prebiotic is selected from the family of ⁇ -galacto-oligosaccharides / raffinose (e.g. pea GOS, soy GOS), ⁇ -galacto-oligosaccharides (e.g. ⁇ -GOS, Vivinal GOS, bovine milk oligosaccharides), cello-oligosaccharides (COS) (e.g.
- ⁇ -galacto-oligosaccharides / raffinose e.g. pea GOS, soy GOS
- ⁇ -galacto-oligosaccharides e.g. ⁇ -GOS, Vivinal GOS, bovine milk oligosaccharides
- COS cello-oligosaccharides
- the lipid is selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, or a mixture thereof, further wherein in one aspect the triglyceride comprises butyrate and/or caprylate. More preferably the lipid is selected from: a.
- Triglycerides composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and g.
- the composition as defined herein may comprise a probiotic, a prebiotic and a lipid as defined above, wherein: (a) the probiotic bacterium is selected from Lactobacillus johnsonii NCC 533 (CNCM I- 1225) or a probiotic having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (SEQ ID NO: 1).
- the prebiotic is selected from pea GOS, soy GOS, ⁇ -GOS, Vivinal GOS, bovine milk oligosaccharides, human milk oligosaccharides, cellobiose, cellotriose, cellotetraose, soluble hydrolyzed wheat, soluble hydrolyzed oat and/or ⁇ -glucan hydrolysates containing cellobiose or cellotriose or cellotetraose, or a combination thereof;
- the lipid is selected from: a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b.
- TG Triglycerides
- MCFAs medium chain fatty acids
- Triglycerides composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and g.
- the composition as defined herein is selected from a food product or nutritional composition, dietary supplements, a food for special medical purposes (FSMP), a nutritional supplement, a dairy-based drink, a low-volume liquid supplement, functional food products, functional beverage products, a meal replacement beverage, and combinations thereof. Additionally, without being limiting thereto, the composition may be in an administrable form, preferably selected from a pharmaceutical formulation.
- FSMP food for special medical purposes
- the composition may be in an administrable form, preferably selected from a pharmaceutical formulation.
- the composition may be solid or liquid, may be present in form of a powder, a tablet, a capsule, or may be in form of an oil formulation, an emulsion, an oil-in-water emulsion (o/w emulsion), or a water-in oil emulsion (w/o emulsion).
- Each of the compounds of the composition can be administered at the same time as the other compounds (for example, as a single unit) or separated by a time interval (for example, in separate units).
- the compounds are provided in form of a single unit.
- the present invention particularly provides a nutrition-based solution for management of uremic toxins related to disease conditions and associated complications.
- compositions can be in the form of a medical food or FSMP (food for special medical purposes) supplement, as a component of medical nutrition product, as an adjunct/concurrent to standard of care, as an adjunct/concurrent to kidney disease medication such as SGLT inhibitor, as an adjunct/concurrent to nutritional ingredients targeting kidney mitochondrial dysfunction, as an adjunct/concurrent to a protein diet, as a nutritional supplement, as a dairy-based drink, as a low-volume liquid supplement, as a meal replacement beverage, and combinations thereof, etc.
- FSMP food for special medical purposes
- the invention is directed to the use of the composition as defined herein for lowering or avoiding accumulation of uremic toxins, preferably in the treatment of cardiometabolic or neurodegenerative conditions or for preventing accumulation of uremic toxins, preferably in the treatment of cardiometabolic or neurodegenerative conditions.
- the composition is thereby preferably used for the reduction of uremic toxins in cardiometabolic or neurodegenerative conditions and related comorbidities, for delaying the progression of such cardiometabolic or neurodegenerative conditions and comorbidities and/or for managing symptoms and syndrome associated with toxic effects of uremic solutes of such cardiometabolic or neurodegenerative conditions and related comorbidities, and/or for preventing accumulation of uremic toxins in the treatment of cardiometabolic or neurodegenerative conditions and related comorbidities.
- Cardiometabolic or neurodegenerative conditions and related comorbidities that can be treated by using the composition preferably include the following cases: • treatment or prevention of Kidney disease, including chronic and acute; dialysis and pre- dialysis states of kidney disease; rare (kidney) diseases, genetic- and metabolic-induced (kidney) diseases; • treatment or prevention of Uremic syndrome, including protein energy wasting syndrome, bone-loss, hyper anorexia, fatigue, or inflammation; • delay of advanced kidney disease complication, including anemia, hyperphosphatemia, secondary hyperparathyroidism, bone disease, and neurological conditions; • delay of kidney disease comorbidities, including cardiovascular disease; • prevention of the risk or management of malnutrition; • delay of the progression of cardiometabolic disease; • prevention of the risk or management of cardiovascular disease and comorbidities, such as diabetes; and/or • prevention of the risk or management of neurodegenerative and neurological conditions.
- Kidney disease including chronic and acute
- dialysis and pre- dialysis states of kidney disease including rare (kidney) diseases
- subject for any such treatments or a patient in need of such a treatment is a mammal, preferably, a human or a pet, such as a companion animal, suffering from any of the above mentioned cardiometabolic or neurodegenerative conditions and related comorbidities.
- a subject for any such treatments or a patient in need of such a treatment may be a child, a toddler or an infant, an elderly, a companion animal, but also companion pets, such as a cat or a dog, wherein the subject is preferably either at risk of developing such a disease or has already developed such a disease.
- a method of treatment of cardiometabolic or neurodegenerative conditions as defined above preferably comprising as a first step (a) a step of preparing and providing a composition as discussed above comprising the specifically selected probiotic, the specifically selected prebiotic and the specifically selected lipid as defined above; and (b) administering such a composition to a patient in need thereof, typically suffering from an increase of uremic toxins, typically in the context of cardiometabolic or neurodegenerative conditions as defined herein.
- kits suitable for use in lowering and/or avoiding accumulation of uremic toxins in cardiometabolic or neurodegenerative conditions as defined herein comprising the composition as described herein, comprising the specifically selected probiotic, bacterium, the specifically selected prebiotic and the specifically selected lipid as defined above; for admixing to form one or more of the compositions disclosed herein and/or for use in one or more of the methods disclosed herein, for example in separate containers as two or more liquid solutions or dried powders.
- the kit may also include instructions for use.
- Embodiment 1 Composition for use in lowering or avoiding accumulation of uremic toxins in cardiometabolic or neurodegenerative conditions, wherein the composition comprises: (a) a probiotic bacterium, selected from probiotic bacteria ⁇ lacking a gene for producing at least one of urea, uric acid, p-cresol, p-cresyl sulfate, indoxyl sulfate, indole, indole acetic acid, indoxyl, trimethylamine, TMAO, dimethylglycine, PCG, CMPF, betaine and/or glutarate ; ⁇ lacking at least one bacterial enzyme selected from urease, carnitine monooxygenase & reductase, tryptophanase and/or hydroxyphenylacetate ; and/or ⁇ expressing at least one bacterial enzyme selected from ⁇ -galactosidase, ⁇ - galactosidase, glucan 1,4
- Embodiment 2 The composition for use according to Embodiment 1, wherein the probiotic bacterium (a) is selected from at least one of the following a. to k.: a. Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); b. Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T)); c. Bifidobacterium longum subspecies longum NCC 2705 (CNCM I-2618) (NCBI refseq; GCA_000007525.1); d. Enterococcus faecium NCC 2768 (NCIMB 10415); e.
- the probiotic bacterium (a) is selected from at least one of the following a. to k.: a. Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); b. Bifidobacterium longum subspecies infantis
- Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1); f. Lactococcus lactis NCC 2287 (CNCM I-4154); g. Lacticaseibacillus paracasei NCC 2461 (CNCM I-2116); h. Lacticaseibacillus rhamnosus NCC 4007 (CGMCC 1.3724); i. Staphylococcus carnosus NCC 1052 (CNCM I-5400); j. Staphylococcus carnosus NCC 971 (CNCM I-5398); and/or; k.
- Streptococcus thermophilus NCC 2496 (CNCM I-3915); or a probiotic having a genome that has at least 95% Average Nucleotide Identity (ANI), preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to any one of the genomic sequences of the probiotic bacteria according to any one of a. to k. as defined above.
- ANI Average Nucleotide Identity
- Embodiment 3 The composition for use according to Embodiment 2, wherein the composition comprises two or more probiotic bacteria defined in a. to k.
- Embodiment 4 The composition for use according to Embodiment 2, wherein the composition comprises two or more probiotic bacteria having a genome that has at least 99% ANI to the genomic sequence of the probiotic bacteria according to a. to k.
- Embodiment 5 The composition for use according to Embodiment 2, wherein the probiotic bacterium (a) is Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1) or a probiotic bacterium having a genome that has at least 95% ANI, preferably at least 96% ANI, more preferably at least 97% ANI, even more preferably at least 98% ANI, most preferably at least 99% ANI or even 99.5% ANI or 99.9% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1, SEQ ID NO: 1).
- Embodiment 6 The composition for use according to any one of Embodiments 1 to 5, wherein the prebiotic (b) is selected from ⁇ -galacto-oligosaccharides ( ⁇ -GOS) / raffinose, ⁇ -galacto- oligosaccharides ( ⁇ -GOS), and cello-oligosaccharides (COS), human milk oligosaccharides (HMOs), or a combination thereof.
- the prebiotic (b) is selected from ⁇ -galacto-oligosaccharides ( ⁇ -GOS) / raffinose, ⁇ -galacto- oligosaccharides ( ⁇ -GOS), and cello-oligosaccharides (COS), human milk oligosaccharides (HMOs), or a combination thereof.
- Embodiment 7 The composition for use according to any one of Embodiments 1 to 6, wherein the prebiotic (b) is selected from soy GOS ( ⁇ -GOS), pea GOS ( ⁇ -GOS), bovine milk oligosaccharides (BMOS) ( ⁇ -GOS), Vivinal GOS ( ⁇ -GOS), human milk oligosaccharides (HMOs) (2'- fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N- tetraose (LNT), 3'-sialyllactose (3SL), and/or 6'-sialyllactose (6SL)), Cellobiose, Cellotriose, Cellotetraose, and soluble hydrolyzed wheat, soluble hydrolyzed oat and/or ⁇ -glucan hydrolysates containing cellobiose or cellotrios
- Embodiment 8 The composition for use according to any one of Embodiments 1 to 7, wherein the lipid (c) is selected from: a. Triglycerides (TG) composed of a mixture of butyrate (C4:0) and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs), preferably C4 and/or C8 fatty acids; c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e.
- Triglycerides composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and g. Short and medium chain fatty acids that could be metabolized into ketone bodies, preferably C4 and/or C8 fatty acids (such as butyric acid (C4:0) and/or caprylic acid (C8 :0)).
- TG Triglycerides
- f. Short chain fatty acids that could be metabolized into ketone bodies preferably C4 and/or C8 fatty acids (such as butyric acid (C4:0) and/or caprylic acid (C8 :0)).
- C4 and/or C8 fatty acids such as butyric acid (C4:0) and/or caprylic acid (C8 :0)
- Embodiment 9 The composition for use according to any of Embodiments 1 to 8, wherein: a. the probiotic bacterium is selected from at least one of the probiotic bacteria according to
- the prebiotic is selected from ⁇ -galacto-oligosaccharides/raffinose, ⁇ -galacto- oligosaccharides, or cello-oligosaccharides, or a combination thereof, preferably selected from soy GOS ( ⁇ -GOS), pea GOS ( ⁇ -GOS), bovine milk oligosaccharides (BMOS) ( ⁇ -GOS), Vivinal GOS ( ⁇ -GOS), cellobiose, cellotriose, cellotetraose, soluble hydrolyzed wheat, soluble hydrolyzed oat and/or ⁇ -glucan hydrolysates containing cellobiose or cellotriose or cellotetraose, or a combination thereof; c.
- soy GOS ⁇ -GOS
- pea GOS ⁇ -GOS
- bovine milk oligosaccharides BMOS
- ⁇ -GOS bovine milk oligosaccharides
- Vivinal GOS ⁇
- the lipid is selected from a triglyceride, a short chain fatty acid and/or a medium chain fatty acid, wherein the triglyceride comprises short chain fatty acids, medium chain fatty acids, or a mixture thereof, further wherein in one aspect the triglyceride comprises butyrate and/or caprylate.
- Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs), preferably C4 and/or C8 short and medium chain fatty acids; c.
- Triglycerides composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f. Short chain fatty acids that could be metabolized into ketone bodies; and g. Short and medium chain fatty acids that could be metabolized into ketone bodies, preferably C4 and/or C8 short and medium chain fatty acids (such as butyric acid (C4:0) and/or caprylic acid (C8 :0)).
- C4 and/or C8 short and medium chain fatty acids such as butyric acid (C4:0) and/or caprylic acid (C8 :0)
- Embodiment 10 The composition for use according to claim 9, wherein the probiotic bacterium (a) is selected from Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1) or a probiotic having a genome that has at least 90% ANI, preferably at least 95% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1).
- the probiotic bacterium (a) is selected from Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1) or a probiotic having a genome that has at least 90% ANI, preferably at least 95% ANI to the genomic sequence of Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1).
- Embodiment 11 The composition for use according to Embodiment 7 or Embodiment 8, wherein the prebiotic (b) selected from soy GOS ( ⁇ -GOS), pea GOS ( ⁇ -GOS), bovine milk oligosaccharides (BMOS) ( ⁇ -GOS), Vivinal GOS ( ⁇ -GOS), cellobiose, cellotriose, cellotetraose, soluble hydrolyzed wheat, soluble hydrolyzed oat and/or ⁇ -glucan hydrolysates containing cellobiose or cellotriose or cellotetraose, or a combination thereof.
- the prebiotic (b) selected from soy GOS ( ⁇ -GOS), pea GOS ( ⁇ -GOS), bovine milk oligosaccharides (BMOS) ( ⁇ -GOS), Vivinal GOS ( ⁇ -GOS), cellobiose, cellotriose, cellotetraose, soluble hydrolyzed wheat, soluble hydrolyzed o
- Embodiment 12 The composition for use according to any one of Embodiments 9 to 11, wherein the lipid (c) is selected from: a. Triglycerides (TG) composed of a mixture of butyrate and medium chain fatty acids (MCFAs); b. Triglycerides (TG) composed of a mixture of short and medium chain fatty acids (SMCFAs); c. Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids (such as a Triglyceride composed of a mixture of butyrate and oleate); d. Triglycerides composed of a medium chain fatty acid; e. Triglycerides (TG) composed of a short chain fatty acid; f.
- MCFAs butyrate and medium chain fatty acids
- SMCFAs short and medium chain fatty acids
- TG Triglycerides
- Triglycerides (TG) composed of a mixture of butyrate and long chain fatty acids such as a Tri
- Embodiment 13 The composition for use according to any one of Embodiment 1 to 12, wherein the probiotic bacteria are contained in an amount of between 103 cfu to 1012 cfu per daily dose, typically in an amount of between 104 cfu to 1011 cfu per daily dose, preferably in an amount of between 105 cfu to 1010 cfu per daily dose, or 105 cfu to 109 cfu per daily dose, likewise preferably in an amount of between 106 cfu to 109 cfu per daily dose, 106 cfu to 108 cfu per daily dose or in an amount of 108 cfu to 1010 cf
- Embodiment 14 The composition for use according to one any of Embodiment 1 to 13, wherein the prebiotics are contained in an amount of 0.1g to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- Embodiment 15 The composition for use according to any one of Embodiments 1 to 14, wherein the lipids are contained in an amount of 0.1g to 30g per daily dose, preferably in an amount of between 2g to 15g per daily dose.
- Embodiment 16 The composition for use according to any one of Embodiments 1 to 15, wherein the lipid is a triglyceride consisting of butyrate and caprylate or a triglyceride consisting of butyrate and oleate.
- Embodiment 17 The composition for use according to any one of Embodiments 1 to 15, wherein the lipid is a triglyceride consisting of butyrate and caprylate.
- Embodiment 18 The composition for use according to any one of Embodiments 1 to 17, which is in form of a food product or nutritional composition, dietary supplement, a food for special medical purposes (FSMP), a nutritional supplement, a dairy-based drink, a low-volume liquid supplement, functional food product, functional beverage product, a meal replacement beverage, and combinations thereof.
- FSMP food for special medical purposes
- Embodiment 19 The composition for use according to any one of Embodiments 1 to 18, wherein the composition is provided in form of a powder, a tablet, a capsule, or may be in form of an oil formulation, an emulsion, an oil-in-water emulsion (o/w emulsion), or a water-in oil emulsion (w/o emulsion).
- Embodiment 20 The composition for use according to any one of Embodiments 1 to 19, wherein the reduction of uremic toxins in cardiometabolic or neurodegenerative conditions is for delaying the progression of such diseases and comorbidities and/or for managing symptoms and syndrome associated with toxic effects of uremic solutes of such diseases and comorbidities.
- Embodiment 21 The composition for use according to any one of Embodiments 1 to 19, wherein the reduction of uremic toxins in cardiometabolic or neurodegenerative conditions includes: o treatment or prevention of Kidney disease, including chronic and acute; dialysis and pre-dialysis; rare diseases, genetic- and metabolic-induced; o treatment or prevention of Uremic syndrome, including protein energy wasting, bone- loss, hyper anorexia, fatigue, or inflammation; o delay of advanced kidney disease complication, including anemia, hyperphosphatemia, secondary hyperparathyroidism, bone disease, neurological conditions; o delay of kidney disease comorbidities, including cardiovascular disease; o prevention of the risk or management of malnutrition; o delay of the progression of cardiometabolic disease; o prevention of the risk or management of cardiovascular disease and comorbidities (diabetes); and/or o prevention of the risk or management of neurodegenerative and neurological conditions
- Embodiment 23 Method of treatment of cardiometabolic or neurodegenerative conditions as defined above, comprising as a first step (a) a step of preparing and providing a composition according to any one of Embodiments 1 to 17, comprising the probiotic, the prebiotic and the lipid; and (b) administering such a composition to a patient in need thereof suffering from an increase of uremic toxins in the context of a cardiometabolic or neurodegenerative condition.
- Embodiment 24 Method of treating a cardiometabolic or neurodegenerative condition as defined in Embodiment 21, comprising administering to a patient a composition according to any one of Embodiments 1 to 17.
- Embodiment 25 Use of a composition defined in any one of Embodiments 1 to 17 in the manufacture of a medicament for the treatment of a cardiometabolic or neurodegenerative condition as defined in Embodiment 21.
- Embodiment 26 The composition for use according to any one of Embodiments 1 to 15 and 17 to 21, the kit of parts of Embodiment 22, the method of Embodiment 23 or Embodiment 24, or the use of Embodiment 25 wherein the composition comprises Lactobacillus johnsonii NCC533109, cellobiose 1%, short-medium-chain triglyceride containing butyrate and caprylate 1%.
- Embodiment 27 The composition for use according to any one of Embodiments 1 to 15 and 17 to 21, the kit of parts of Embodiment 22, the method of Embodiment 23 or Embodiment 24, or the use of Embodiment 25 wherein the composition comprises Lactobacillus johnsonii NCC533109, cellobiose 1%, pea GOS 1%, short-medium-chain triglyceride containing butyrate and caprylate 1%.
- Embodiment 28 The composition for use according to any one of Embodiments 1 to 19, 26 and 27, the kit of parts of Embodiment 20, 26 and 27, the method of any one of Embodiments 21, 22, 26 and 27, or the use of any one of Embodiments 23, 26 and 27, wherein the composition further comprises one or more HMOs, preferably one or more of 2'-fucosyllactose (2’FL), 3- fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N-tetraose (LNT), 3'-sialyllactose (3SL), or 6'-sialyllactose (6SL).
- 2'-fucosyllactose 2'-fucosyllactose (2’FL), 3- fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N-tetraose (LNT),
- Embodiment 29 The composition for use according to any one of Embodiments 1 to 19, 26 and 27, the kit of parts of Embodiment 20, 26 and 27, the method of any one of Embodiments 21, 22, 26 and 27, or the use of any one of Embodiments 23, 26 and 27, wherein the composition further comprises one or more of 2'-fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N- neotetraose (LNnT), or lacto-N-tetraose (LNT).
- Embodiment 30 The composition for use, the kit of parts, the method, or the use of Embodiment 28 or Embodiment 29 further comprising one or more of a.
- Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); b. Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T)); and c. Bifidobacterium longum subspecies longum NCC 2705 (CNCM I-2618) (NCBI refseq; GCA_000007525.1).
- Embodiment 31 The composition for use according to any one of Embodiments 1 to 15 and 18 to 21, the kit of parts of Embodiment 20, 26 and 27, the method of any one of Embodiments 21, 22, 26 and 27, or the use of any one of Embodiments 23, 26 and 27, wherein the composition comprises a triglyceride comprised of butyrate and a long chain fatty acid.
- Embodiment 32 The composition for use, the kit of parts, the method, or the use of Embodiment 31, wherein the triglyceride comprised of butyrate and a long chain fatty acid is one or more of triglycerides comprising butyrate and a long chain fatty acid include 1,3-dibutyryl-2- linoleoylglycerol, 1,3-dibutyryl-2-stearoylglycerol, 1-butyryl-2-oleoyl-3-palmitoylglycerol, 1-palmitoyl-2-oleoyl-3-butyrylglycerol, 1-butyryl-2-oleoyl-3-linoleoylglycerol, 1- linoleoyl-2-oleoyl- 3-butyrylglycerol, 1-oleoyl-2-butyryl-3-linoleoylglycerol, 1-linoleoyl-2-butyryl-3-
- Embodiment 33 The composition for use, the kit of parts, the method, or the use of Embodiment 31, wherein the triglyceride comprised of butyrate and a long chain fatty acid is a mixture of butyrate and a long chain fatty acid is oleic acid (C18:1).
- Embodiment 34 The composition for use, the kit of parts, the method, or the use of any one of Embodiments 31 to 33, wherein the composition further comprises one or more HMOs, preferably one or more of 2'-fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N-tetraose (LNT), 3'-sialyllactose (3SL), or 6'-sialyllactose (6SL).
- HMOs preferably one or more of 2'-fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), lacto-N-tetraose (LNT), 3'-sialyllactose (3SL), or 6'-sialyllactose (6SL).
- Embodiment 35 The composition for use, the kit of parts, the method, or the use of any one of Embodiments 31 to 33, wherein the composition further comprises one or more of 2'-fucosyllactose (2’FL), 3-fucosyllactose (3’FL), lacto-N-neotetraose (LNnT), or lacto-N-tetraose (LNT).
- 2’FL 2'-fucosyllactose
- 3-fucosyllactose 3-fucosyllactose (3’FL)
- lacto-N-neotetraose LNnT
- lacto-N-tetraose lacto-N-tetraose
- Method 1 Ingredient Selection In silico selection of probiotic stains with low capacity to produce clinically relevant uremic toxins
- the Nestle inhouse bacterial genomics platform WallGene containing all genomes of Nestle Culture Collection
- BlastP Basic Local Alignment Search Tool for protein sequences, (Altschul et al., 1990) searches were used to select probiotic strains from NCC with low capacity to contribute to uremic toxins production.
- Blast database containing all predicted proteins of the probiotic strains was created.
- Bacterial and host metabolic pathways involved in uremic toxin metabolism were compiled from public database like KEGG pathway (Kyoto Encyclopedia of Genes and Genomes) and literature.
- the amino acid sequences of the key enzymes involved in uremic toxin metabolism were further extracted from public database like KEGG, UniProt and SwissProt according to the EC number, and complied in a FASTA file (list of reference protein sequences). These FASTA files, containing the protein sequences of key enzymes, were used as the reference sequences to perform BLASTp against the protein profiles of available probiotic strains from NCC. When pBLAST showed a low similarity to the reference protein (e.g. identity ⁇ 30%), InterProScan (EMBL-EBI) was further used to predict the presence of functional domains (Quevillon et al., 2005).
- the candidate probiotics are obtained from Nestle Culture Collection (NCC) or from publicly available deposited strains and culture collections (ATCC, NCIMB, NCBI).
- the carbohydrate ingredients are sourced from commercial supplier or from Nestlé or its subsidies.
- a complete list of exemplary carbohydrate sources could be found in Table 1.
- Table 1 shows exemplary different genes of Lactobacillus johnsonii NCC 533 with Carbohydrate-Active Enzymes (CAZymes), Enzyme Code (EC) numbers of functional enzymes, their functions, suitable and related carbohydrate families, recommended Fiber ingredients in view of inventive preclinical tests, and availability of such compounds.
- CAZymes Carbohydrate-Active Enzymes
- EC Enzyme Code
- the carbohydrates were selected already in an in-silico process based on their biochemical structural characteristics to be fermented or metabolized or used or broken-down or degraded or converted by the Carbohydrate-Active Enzymes (CAZymes) present in the genome of Lactobacillus johnsonii NCC 533.
- CAZymes Carbohydrate-Active Enzymes
- Step 1 Encapsulation of lipid oil ingredients: BiPro is hydrated into water under stirring (Ystram) and lipid oils are slowly added (Polytron). The resulting mixture is heated under stirring at 82°C for 10 min to fix the encapsulation.
- Step 2 Spray drying of lipid-prebiotic ingredients: prebiotics are suspended in water and mixed with lipid suspensions. The mixtures are then homogenized (Ystram), pasteurized at 72°C 2 min, and then spray dried at 140°C. The final product is a white powder.
- Step 3 Addition of probiotics: probiotics are added to the spray-dried prebiotic-lipid powder mixture. Turbula are then used to ensure a homogenous repartition of the probiotics into the powder.
- Method 2 In-vitro/ex-vivo investigation of the relevance of the microbiome ingredients in improving uremic toxins generation Preservation of fecal samples Fecal material was collected from eight CKD and nine healthy adult donors.
- Fecal suspensions were prepared and mixed with ProDigest optimized cryoprotectant, i.e. a modified version of the cryoprotectant developed by Hoefman et al. (2013).
- the obtained suspensions were aliquoted, flash frozen and then preserved at -80°C (cryostock). Just before the experiment, an aliquot was defrosted and immediately added to the reactors.
- Short-term colonic experiment to evaluate the difference on metabolic profile between the microbiome of CKD and healthy individuals The short-term colonic experiments were performed in a single reactor to investigate overall fermentative activity, such as saccharolytic and proteolytic activity, and changes in microbial metabolite production by the fecal microbiome from healthy and CKD individuals.
- the short- term colonic experiments represent a simplified simulation of the continuous Simulator of the Human Microbial Ecosystem (SHIME®, ProDigest).
- SHIME® Human Microbial Ecosystem
- the amino acid mix consisting of L-tryptophan, L-tyrosine, L- carnitine, choline and L-phenylalanine was added with a sugar-depleted nutritional background medium (containing basal nutrients of the colon including peptone, yeast extract, mucin and L- cystein) to the reactors.
- 10% (v/v) of a cryostock containing 7.5% fecal inoculum of each of the investigated donors (which served as microbial source) was added, bringing the total volume in the reactors to 70 mL.
- a reference condition (or negative control) containing only the nutritional medium (without spiked AA) was included for each donor.
- Reactors were incubated for 48h at 37°C, under continuous mild shaking (90 rpm) and anaerobic atmosphere. The incubations were performed in fully independent reactors with sufficiently high volume to not only ensure robust microbial fermentation, but also to enable the collection of multiple samples over time (oh, 24h, 48h). Samples at different time points were assessed for changes in pH, gas, short-chain fatty acids, ammonium, lactate, uremic toxins and precursors.
- the Prodigest’s SHIME® setup was adapted by combining the upper gastrointestinal tract with a single colonic region.
- the colonic region simulated the transverse colon (TC) conditions, having a pH of 6.2 till 6.6 and a retention time of 32h.
- TC transverse colon
- the SHIME® experiment for this study consisted of two stages: (1) Inoculation period: On the first day, the colon reactors were inoculated with an appropriate fecal sample (conserved frozen as part of phase 1 of the study) and was allowed to grow and colonize the reactor. After this overnight incubation, the colon reactors were fed with the basic nutritional matrix for two more days, to support the maximum diversity of the gut microbiota originally present in the fecal inoculum.
- H2 and CO2 are the first gases to be produced; they can subsequently be utilized as substrates for CH4 production, reducing the gas volume. H2 can also be utilized to reduce sulfate to H2S, resulting from proteolytic fermentation2. As a result, N2, O2, CO2, H2 and CH4 constitute for 99% the volume of intestinal gas. The remaining 1% consists of NH3, H2S, volatile amino acids and short chain fatty acids.3 Each measurement was done in single repetition. • Acid/base consumption: the production of microbial metabolites in the colon reactors alters the pH. Without continuous pH control (through the addition of acid or base), the pH would exceed the fixed intervals.
- SCFA Short-chain fatty acids
- the pattern of SCFA production is an assessment of the microbial carbohydrate metabolism (acetate, propionate and butyrate) or protein metabolism (branched CFA) and can be compared to typical fermentation patterns for normal GI microbiota.
- Quantitative analysis of the SCFA is done by means of capillary gas chromatography, coupled with a flame ionization detector (FID).
- FID flame ionization detector
- the isolation of SCFA is performed by liquid-liquid extraction (De Boever et al 2000) • Lactate: the human intestine harbors both lactate-producing and lactate-consuming bacteria.
- Lactate is produced by lactic acid bacteria and decreases the pH of the environment, thereby also acting as an antimicrobial agent. It can also be rapidly converted into propionate and butyrate by other microorganisms. Determination of lactate concentrations was performed using the EnzytecTM kit (R-Biopharm). • Ammonium: Ammonium is a product of proteolytic degradation. Proteolytic fermentation results in the production of potentially toxic or carcinogenic compounds such as p-cresol and p-phenol. Determination of ammonium concentrations in the samples was done by colorimetric analysis, using the indophenol blue spectrophotometric (IPB) method.
- IPB indophenol blue spectrophotometric
- BCFA isobutyric acid, isovaleric acid and isocaproic acid
- FID flame ionization detector
- p-cresol, p-cresylsulfate, indole, indole-3-acetic acid, betaine, trimethylamine, trimethylamine-N-oxide, indoxyl, indoxyl sulfate, semialdehyde glutaric acid, uric acid, and urea) were determined using ultra-high performance liquid-chromatography coupled to high-resolution mass spectrometry and fluorescence detection.
- Untargeted metabolomics panel of microbial metabolites, including but not exhaustive to bile acids, amino acids were measured using Prodigest’s Metakey platform Microbial community composition: • Community composition was measured using quantitative deep shotgun sequencing Description of statistics A two-tailed paired t-test was used for the statistical comparison of the different arms within each donor, each conditions and treatments. Differences were considered statistically significant if the p-value was less than 0.05.
- Method 3 Animal Experiments Animal Models Mouse Model Animal experiments were performed at CarMeN Laboratory, Direction Départementale des Services Vcierinaires du Rhône. All experiments were carried out according to the guidelines laid down by the French Mini conception de l’Agriculture and the European Union Council Directive for the Care and Use of Laboratory Animals.
- mice were purchased from Janvier SA (Le Genest-Saint-Isle, France) and housed in an air-conditioned room with a controlled environment of 21°C ⁇ 0.5°C and 60%–70% humidity, under a 12-hour light/dark cycle (light on from 07:00 to 19:00) with free access to food and water.
- Moderate CKD was induced by 5/6 nephrectomy with a two-step surgical procedure. Additional animals underwent sham surgery and served as control mice.
- Figure 14 for an overview of the in-vivo animal experimentation. Animal Diet and Treatment From week 0 to week 3, all animals were fed a standard rodent diet (SAFE A04 standard diet for rodents).
- P1 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate.
- P2 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533, cellobiose, pea GOS, short-medium chain triglycerides containing butyrate and caprylate.
- Custom diet with nutritional or symbiotic blend was made by dry mixing the powder version of SAFE A04 with the blend.
- Blood glucose values were determined from a drop of blood sampled from the terminal portion of the tail, using an automatic glucose monitor (Accu-Check Performa, Roche, Meylan, France).
- Urine parameters Urine was collected over 24 hours in metabolic cages to evaluate urine output, and markers of kidney function, such as protein, creatinine, and albumin levels, and for metabolomics analysis. Markers of kidney function were measured using commercial assays.
- Urine metabolomics was measured using reverse-HPLC coupled to a fluorescence detector or using Prodigest’s MetaKey® platform.
- Biochemical & Metabolomics Measurements Uremic toxins were quantified in plasma and urine by using reverse-HPLC coupled to a fluorescence detector or using Prodigest’s MetaKey® technology.
- kidney Histology In both sham and nephrectomised mice, the remnant kidney was removed at sacrifice. Kidneys were harvested and decapsulated. Kidney histological lesions were analyzed after Haemotoxylin & Eosin Staining (HES) and Sirius red staining. Briefly, the kidneys were fixed for 24 hours in 4% formalin and embedded in paraffin after conventional processing.
- HES Haemotoxylin & Eosin Staining
- Ileum Histology Ileum samples were collected during the end of the experiments. Ileum were fixed for 24 hours in 4% formalin and embedded in paraffin after conventional processing. The sections were then immunofluorescence stained with rabbit antibodies against occludin followed by goat anti- rabbit secondary antibodies. Images were captured using confocal microscope and the relative fluorescence intensities of occludin were quantified using image J software. Statistical Analyses In each experiment, multiple mice were analyzed as biological replicates. Dot plots with a linear scale show the arithmetic mean.
- Rat Models are expressed as the mean ⁇ standard error of the mean (SEM). GraphPad Prism version 9 was used for statistical analyses. For comparisons between two groups, significance was determined using the two-tailed Student’s t test or nonparametric Mann-Whitney test. For comparisons among more than two groups, one way (ANOVA) followed by uncorrected Fisher’s LSD tests. Differences were noted as significant at p ⁇ 0.05. Rat Model The rat model experiments were performed at Grubra, a fully AAALAC accredited unit, and all animal experiments were conducted in accordance with Gubra’s bioethical guidelines, which are fully compliant to internationally accepted principles for the care and use of laboratory animals. All experiments are licensed by the Danish Animal Experimentation Council.
- the 5/6 nephrectomy (Nx) was conducted in a two-step surgical procedure under isoflurane anesthesia in Wistar RjHan:WI rats (Janvier, France). Animal Diet and Treatment Animals were treated in accordance with the following.
- the two step nephrectomy (Nx) procedure was started. Starting at day -2, the animals were fed a standard rodent diet (SAFE A04 standard diet for rodents). At day 1, the animals were fed either the standard rodent diet or a customized diet in accordance with their group.
- SAFE A04 standard diet for rodents
- the customized diet included the cellobiose and short-medium chain triglycerides containing butyrate and caprylate and the Lactobacillus johnsonii NCC533 (at 108 CFU) was administered by gavage. This regime was administered once per day for 8 weeks.
- Example 1 Identification of optimal symbiotics to improve the build-up of uremic toxins In silico screening and identification of candidate probiotic based on the absence of uremic toxin-related enzymes encoded in the genome of the bacterial strains.
- the European Uremic Toxin Work Group has listed 90 compounds considered to be uremic toxins (Yavuz et al., 2005).
- gut-derived and plasma-bound uremic toxins including urea, trimethylamine N-oxide (TMAO), indole-3-acetic acid (IAA), indoxyl and p-cresol were examined.
- Bacterial metabolic pathways to produce these uremic toxins were compiled from public database like KEGG pathway (Kyoto Encyclopedia of Genes and Genomes) and literature.
- the different uremic toxins biosynthetic routes were summarized, and each enzyme potentially catalyzing the different steps was depicted using their EC numbers (Enzyme Commission Number) ( Figure 1). Conversions of urea to ammonia (NH3) and carnitine or choline to TMAO only require one or two steps.
- suitable probiotic strains analyzed were as follows: ⁇ Bifidobacterium animalis subspecies lactis NCC 2818 (CNCM I-3446); ⁇ Bifidobacterium longum subspecies infantis NCC 341 (ATCC 15697 (T)); ⁇ Bifidobacterium longum subspecies longum NCC 2705 (CNCM I-2618) (NCBI refseq; GCA_000007525.1); ⁇ Enterococcus faecium NCC 2768 (NCIMB 10415); ⁇ Lactobacillus johnsonii NCC 533 (CNCM I-1225) (NCBI refseq; GCA_000008065.1); ⁇ Lactococcus lactis NCC 2287 (CNCM I-4154); ⁇ Lacticaseibacillus paracasei NCC 2461 (CNCM I-2116); ⁇ Lacticaseibacillus rhamnosus NCC 4007 (CGMCC 1.3724);
- L. johnsonii NCC 533 exceptionally does not have any of the key enzymes encoded in its genome and therefore predicted to have the lowest probability to produce any of the uremic toxins of concern.
- This strain was also chosen for the following in silico prebiotic carbohydrate selection and in vitro growth test. In silico screening and identification of prebiotic carbohydrates based on the CAZy presence encoded in the genome of the candidate probiotics. The candidate prebiotic carbohydrates were in silico selected based on their structure and likelihood to be degraded, metabolized, fermented or broken down by the candidate probiotic.
- the candidate prebiotic carbohydrates able to be degraded by the probiotic Lactobacillus johnsonii were analyzed and are shown in the following. Since enzyme activities are highly analogous, the findings can be transferred to the further suitable probiotic strains as analyzed above.
- the genome sequence of the probiotic L. johnsonii was examined to identify all the Carbohydrate Active enZYmes (CAZy) it harbors.
- Table 1 summarized the CAZy relevant coding regions, CAZy family annotations, EC numbers of the encoded enzymes, functions, identified fiber ingredients and availability of carbohydrates substrates.
- Lactobacillus johnsonii was shown to harbor all required Carbohydrate Active enZYmes (CAZY) enabling it to degrade the following fibers: ⁇ -galacto-oligosaccharides (raffinose family), galactomannans, ⁇ -galacto-oligosaccharides, cello-oligosaccharides, cello- oligosaccharides, ⁇ -galacto-oligosaccharides (raffinose family) and ScFOS/Inulin.
- CAZY Carbohydrate Active enZYmes
- johnsonii to confirm the in silico selection and define optimal symbiotics to help improve uremic toxin retention.
- Multiple carbohydrates were tested.
- Fiber poly- and oligomers containing galactose and glucose as their main constituents were selected.
- galacto-oligosaccharides GOS
- glucose polymers in the ⁇ -linked configuration included cello- oligosaccharides, purified ⁇ -glucans from barley in three molecular weights (high, medium and low), as well as the soluble fraction of enzymatically-hydrolyzed wheat fiber were tested.
- L. johnsonii NCC 533 was also able to grow on carbohydrates belonging to alpha-galacto-oligosaccharides, galactomannans or fructans families. Specifically, it is able to grown on commercially available fiber AlphaGOS® from pea or soy. For all those carbohydrates, a drop in pH was observed, indicating that L. johnsonii NCC 533 was sufficiently growing on these substrates. Similarly, L.
- L. johnsonii NCC 533 equally grew in the presence of commercial fiber Vivinal® GOS and BMOs (Figure 5).
- Inulin, ScFOS and PHGG minimally support the growth of L. johnsonii NCC533 ( Figure 4).
- L. johnsonii NCC 533 was able to grow efficiently on different carbohydrates belonging to cello-oligosaccharides family (from di- to tetra), especially on cellobiose and cellotriose. It was able to also grow effectively on cellotretraose and soluble hydrolyzed wheat and oat, containing cellobiose and cellotriose, but at lower extent or at later timepoint.
- L. johnsonii NCC 533 was shown to not encode any of the key enzymes required to produce uremic toxins like ammonia, TMAO, IAA, indoxyl and p-cresol. Also, L. johnsonii NCC 533 encodes a large repertoire of enzymes to metabolize different carbohydrates. Based on its CAZy profile, 15 fibers were proposed for growth studies. L. johnsonii NCC 533 was shown to grow on several commercially available fibers, such as AlphaGOS® from soy or pea, Vivinal® GOS and BMOS.
- Beta-galacto-oligosaccharides (such as Vivinal® GOS) are widely used today in infant nutrition and it has been consistently shown that they have a significant bifidogenic effect.
- This type of fiber is one of the few ingredients recognized as a prebiotic by the International Scientific Association of Prebiotics and Probiotics (ISAPP).
- ISAPP International Scientific Association of Prebiotics and Probiotics
- Alpha-galacto-oligosaccharides are emerging ingredients.
- Cello-oligosaccharides are dimer and trimer constituents of any cellulose-based fiber and/or mixed-linkage ⁇ -glucans in oat or barley. Therefore, an ingredient rich in cello-oligosaccharides can be manufactured by applying an optimized enzymatic hydrolysis to cellulose-based fibers/ cereal or mixed-linkage ⁇ -glucans. Combined with other lactobacilli strains, cellobiose and/or cello-oligosaccharides in the form of ⁇ -glucan hydrolyzates have been shown to have the potential to exert synbiotic effects, especially in increased gut saccharolytic metabolism. The other fibers tested (e.g.
- Example 2 - In vitro (ProDigest) Study Study Design Several publications had demonstrated the dysbiotic profile of microbiota from CKD patients. Specifically, an altered microbial composition and function has been characterized in CKD patients compared to healthy individuals. Therefore, in this example, we tested capacity of the invention to correct the microbiome dysbiosis in CKD patients. To do this, fecal microbiota were collected from healthy individuals (control) and patients with Chronic Kidney Disease (CKD).
- CKD Chronic Kidney Disease
- Table 3 provides an overview of the characteristics of the eight CKD patients and nine healthy adult donors that provided fecal microbiome for the in-vitro / ex-vivo experiments.
- the patients are part of the clinical study registered under ClinicalTrials.gov Identifier NCT04768309. Table 3 illustrates that characteristic of these donors.
- These fecal microbiota were then used on experimental set-up using a Prodigest’s in-vitro/ex-vivo technology.
- Control (CTRL) arm SHIME unit fed with basic nutritional medium, which was used to determine the baseline parameters of each donor for comparison with the treated arms.
- P1 arm SHIME unit fed with basic nutritional medium during one cycle per day (entrance at 1h in colon). During the other two cycles, this SHIME unit was fed with a carbohydrate- depleted nutritional medium, and supplemented with nutritional or symbiotic ingredient composed of cellobiose, butyric acid and caprylic acid and probiotic L. johnsonii NCC 533.
- P2 arm SHIME unit fed with basic nutritional medium during one cycle per day.
- this SHIME unit was fed with a carbohydrate-depleted nutritional medium, and supplemented with cellobiose, pea GOS, butyric acid and caprylic acid and probiotic L. johnsonii NCC 533. Additionally, the amino acid mix was added reaching a colonic concentration of 2.5 g/L to provide substrates to test if the invention is able to ameliorate over-production of uremic toxins and precursors.
- the amino acid mix consisted of 23% L-phenylalanine, 20% L-tryptophane, 23% L-tyrosine, 10% L-carnitine and 23% choline.
- CKD microbiota showed higher production of uremic toxin precursor, such as p-cresol, especially in the presence of excess amino acid substrate.
- uremic toxin precursor such as p-cresol
- CKD microbiota also showed higher concentration of proteolytic markers, such as branched chain fatty acids.
- Nutritional or symbiotic blend reduced the production of uremic toxin precursor by the microbiota from CKD patient donors
- the ability of the invention to ameliorate the over-production of uremic toxins and their precursors were evaluated in the presence of low amino acid (AA: day 0 to day 7) and additional AA substrates (day 8 to day 10).
- uremic toxin precursors including indole, p-cresol and trimethylamine (TMA) were shown (see Figure 10). It is hypothesized that the addition of AA will induce further increase in production of uremic toxins and their precursors by the fecal microbiota.
- Indole can be metabolized by gut microbiota using tryptophan as a precursor molecule; thereby converting tryptophan first into tryptamine and indole pyruvic acid, and then converting indole pyruvic acid into indole.
- indole has profound effects on the gut microbial composition, microbial metabolism, the host’s immune system, the host-microbiome interface, and host immune system-intestinal microbiota interactions. Once produced by intestinal bacteria, indole is absorbed into the portal circulation and enters the liver. Hepatic hydroxylation of indole results in 3-hydroxy-indole (indoxyl), of which the majority is then sulfonated into indoxyl sulfate. Indoxyl sulfate is considered as uremic toxins and has been most frequently implicated as a contributor to kidney diseases progression and cardiovascular complications. Moreover, indoxyl sulfate has also been assigned adverse effects on bones and the central nervous system.
- Trimethylamine is a metabolite that is being produced by the gut microbiota in the intestinal lumen, with various dietary quaternary amines as precursor molecules. These precursor molecules mainly include choline and carnitine, but also betaine, ⁇ -butyrobetaine, and other choline-containing compounds. In vivo, produced TMA is rapidly absorbed into the portal circulation by passive diffusion and then oxidized to trimethylamine-N-oxide, by the action of hepatic flavin containing monooxygenases.
- Trimethylamine-N-oxide is involved in oxidative stress, inflammation, cardiac fibrosis, endothelial injury, and platelet inactivation. As such, TMAO has been assigned a biological role in several chronic non- communicable diseases, including CKD. As shown in Figure 10, during the period of d0 to d7, an increasing concentration level of TMA was observed for the blank control group. P1 and P2 showed lower concentration levels compared to the blank control group, with the largest changes observed for P22. Upon administration of the AA formulation, a clear increase in trimethylamine concentration was observed for all donors and experimental conditions, which relates to the increased availability of substrate to produce TMA.
- typical nitrogen sources include amino acids such as ornithine, arginine, aspartic acid, glutamic acid, etc.
- the urea cycle mainly takes place in the liver, also gut microbiota effectuates a mitochondrial urea cycle.
- higher urea concentrations are typically observed, which are known to significantly modify the microbiota in the gut, causing a decrease in bacterial strains that produce anti-inflammatory and fuel molecules and an increase in bacterial strains that can metabolize urea, but also produce uremic toxins including indoxyl sulfate and p-cresol sulfate.
- high urea concentrations may also cause an increased gut permeability and a toxic environment that induces the colonization of bacteria that express ureases and uricases to reduce urea to ammonia.
- Ammonia increases gut pH, facilitating the increase of pathogen bacteria.
- the amino acid formulation includes various sources of nitrogen, spiking this formulation may induce increased urea concentration levels during the colonic incubations. It should, however, be noted that the amino acids that were part of the concerned formulation have not been reported to be specifically involved in the urea cycle.
- a general alteration of the microbial composition by the amino acid spiking with particular alterations of those bacterial strains that metabolize urea, may define the final outcome for the observed urea concentration levels.
- Nutritional or symbiotic blend increased reduced Markers of proteolytic fermentation
- ammonium and branched SCFA result from protein degradation and reflect proteolytic activity of the gut microbiota. As the latter has been associated with direct and indirect adverse health effects (for instance colon carcinogenesis), a reduction in ammonium/branched SCFA production is considered as beneficial.
- branched SCFA levels increased throughout the experiment in all arms of each donor. Supplementation of both ingredient blends (P1 and P2, see above) systematically decreased branched SCFA production across all donors compared to control (see also above).
- SCFA Short chain fatty acid
- beneficial effects of the investigated substrates on SCFA production therefore include an increase of acetate, propionate and/or butyrate production.
- SCFA levels for both test conditions are presented for each of the different SCFA.
- Acetate is one of the key metabolites in the human gut and is thus produced by a wide range of gut microbes including among many others Bacteroides spp. (phylum Bacteroidetes) and bifidobacteria.
- administration of both ingredient blend (P1 and P2) increased the overall acetate production compared to the blank control on average across all donors compared to control.
- P2 exerted the strongest effect.
- P1, P2 and control were as defined above.
- Propionate can be produced by a wide range of gut microbes, with the most abundant propionate producers being Bacteroides spp. (phylum Bacteroidetes), Veillonella (phylum Firmicutes) and Akkermansia muciniphila (phylum Verrucomicrobia). It followed that treatment effects on propionate production were both donor- and product-dependent. Treatment with P1 and P2, it was observed an increasing levels of propionate levels but the levels did not reach significance, owing to some variable response among the 8 donors. Butyrate is produced by members of the Clostridium clusters IV and XIVa (phylum Firmicutes).
- these microbes convert acetate and/or lactate (along with other substrates) to the health-related butyrate. It was observed that both P1 and P2 had a strong stimulatory effect on butyrate production in specific donors. When averaged over the eight selected donors, only treatment with P2 significantly enhanced butyrate production towards the end of the control/treatment period prior to AA spiking (day 7), though a similar trend was observed for P1. Finally, following AA spiking during the final 3 days of the experiment, also P1 significantly enhanced butyrate levels compared to the blank control when averaged over the different donors, reaching similar levels as compared to P2 administration.
- P1 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533108 (this is corrected from the concentration reported in U.S. Provisional Application Nos. 63/439,638 and 63/480,729, which reported the incorrect concentration), cellobiose 1%, short-medium chain triglycerides containing butyrate and caprylate 1%.
- P2 intervention consisted of an ingredient blend containing Lactobacillus johnsonii NCC533108 (this is corrected from the concentration reported in U.S.
- the model represents one of the most used animal models of the progressive renal failure by reduced nephron number, mimicking the condition seen in patients with CKD.
- animals that underwent nephrectomy showed significantly higher plasma levels of clinically relevant uremic toxins, such as p-cresyl sulfate (PCS), indoxyl sulfate (IS), P-cresylglucuronide (PCG), Indole acetic acid (IAA), 3-Carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and uric acid compared to animals with intact kidney function (Group Sham).
- PCS p-cresyl sulfate
- IS indoxyl sulfate
- PCG P-cresylglucuronide
- IAA Indole acetic acid
- CMPF 3-Carboxy-4-methyl-5-propyl-2-furanpropionate
- uric acid compared to animals with intact kidney function
- Proteinuria is a symptom typically seen with conditions affecting the kidneys. Too much protein in the urine means that the kidneys’ filtering mechanism — the glomeruli — are not working properly and are allowing too much protein to escape in the urine. Proteinuria was measured by calculating the ratio of protein over creatinine in the urine. Blood Urea Nitrogen level in the blood is an indicator of kidney function. Urea is produced as by-product in the liver when protein is metabolized. Healthy kidneys filter urea out of the body through urine. High urea levels generally indicate acute or chronic kidney disease or kidney failure. Urea is also considered as one of the clinically relevant uremic toxins.
- CKD nephrectomised animal
- Sham non-CKD animals
- CKD animals treated with nutritional or symbiotic blends showed significantly improved proteinuria and blood urea levels compared to non-treated CKD animals.
- progressive kidney histology damage was evident in CKD animals compared to sham animals.
- Animals treated with nutritional or symbiotic blend showed significantly better histology, as demonstrated by lower fibrosis and improved size and volume of glomeruli compared to non-treated CKD animals.
- Nutritional or symbiotic blend reduces loss of appetite, weight loss and fat mass associated with uremic toxins and chronic kidney disease Uremic toxicity negatively affects multiple organ systems and metabolic pathways leading to organ damage and manifestation of symptoms including neurological conditions and protein energy wasting. As such, we tested the ability of the nutritional or symbiotic blend to improve some of the detrimental consequences of the build-up of uremic toxins; this includes food intake and wasting of energy reserves, such as muscle and adipose fat.
- CKD animals treated with the P1 and P2 intervention showed significantly improved body weight evolution and normalization of food intake to the same level as non-CKD sham animals.
- the energy intake was not significantly different between the two groups.
- treated animals, particularly those treated with P1 showed reduced loss of fat mass observed in CKD, as shown by better adipose reserves as seen by improved epididymal white adipose tissue (eWAT) compared to non-treated CKD animals.
- eWAT epididymal white adipose tissue
- Lisinopril is an angiotensin-converting enzyme inhibitor (ACEi) that is a standard care for nephroprotection. Diets were administered for 8 weeks. Water intake was measured on days 9, 10, 11, 25, 26, 27, 39, 40, and 41. Urine was sampled for analysis of albumin and creatinine at week 7. At termination, plasma was sampled for analysis of urea, creatinine, indoxyl sulfate and p-cresyl sulfate.
- ACEi angiotensin-converting enzyme inhibitor
- a symbiotic composition comprising Lactobacillus johnsonii NCC533 108, cellobiose 1%, short-medium chain triglycerides containing butyrate and caprylate 1% was able to reduce plasmatic uremic toxin concentrations, specifically indoxyl sulfate and p-cresyl sulfate (see Figure 21).
- nephrectomised animal (Group 5/6 Nx Vehicle) showed higher proteinuria compared to non-CKD animals (Sham), confirming the progression of kidney damage.5/6 Nx animals treated with nutritional or symbiotic blends, specifically the P1 blend, showed significantly improved proteinuria levels compared to non-treated CKD animals.
- Example 5 - Clinical Trial Synopsis (Summary) In the following, the clinical trial synopsis s disclosed forming basis for the human clinical trial.
- CmKD is a specific synbiotic blend combined Products being tested with a gut/kidney energetic substrate (TBC: tentative Cellobiose + L johnsonii NCC 533 + C4/C8); analogous to P2, described herein before (e.g., Lactobacillus johnsonii NCC533, cellobiose, pea GOS, short-medium chain triglycerides containing butyrate and caprylate; or a composition analogous to P1 (e.g. Lactobacillus johnsonii NCC533, cellobiose, short-medium chain triglycerides containing butyrate and caprylate).
- TBC gut/kidney energetic substrate
- P2 e.g., Lactobacillus johnsonii NCC533, cellobiose, pea GOS, short-medium chain triglycerides containing butyrate and caprylate
- P1 e.g. Lactobacillus johnsonii
- ⁇ Placebo A placebo matching to the test product is used as control (canola oil and maltodextrin having the caloric equivalent).
- Further exploratory clinical efficacy outcomes include assessments of effects on: Body weight, waist circumference, Bristol Stool Chart (BSC), IBS-C score, bowel movement questionnaire, measures of appetite, fatigue score, the Dialysis Symptom Index, QoL, Sleep quality, cognitive function, daily activity, physical function, symptoms of skin itching, global ureamia symptom score, blood pressure, and arterial stiffness.
- BSC Bristol Stool Chart
- Further exploratory analytical efficacy outcomes include assessments of effects on: targeted metabolomics in feces and plasma, changes in concentration of endotoxinemia (LPS), change in serum markers of intestinal permeability (zonulin, d- lactate) and gut trophic factors (epidermal growth factor (EGF) and GLP-2), quality assessment of dialysis, changes in nutritional status markers (albumin, pre-albumin), changes in inflammatory markers (CRP, IL-6, TNF-alpha, IL-1b, IL-10).
- Randomization/stratification Participants who successfully meet all the screening criteria are randomized in a 2:1 ratio to either CmKD or placebo. Duration: The nutritional intervention (the FSMP or placebo) is provided for approximately 12 weeks. Participants are followed for up to 13 weeks including the screening period of up to 4 weeks. Each treatment visit lasts approximately 1 hour. A sample-size re-estimation/futility analysis (by an independent data monitoring committee (DMC)) is carried out after 36 participants have completed 12 weeks of treatment (e.g., 40% of the initial target of 90 people).
- DMC independent data monitoring committee
- sample-size adjustment an a-priori promising statistical zone is defined to enable a potential re-estimation of study sample size to demonstrate a meaningful effect size on uremic toxin reduction
- futility assessment in case no signal for likelihood to modulate uremic toxin levels, the study is be terminated prematurely.
- DMC charter developed, and the DMC recommendation is communicated to the steering committee. There is no premature unblinding should the recommendation of continued study conduct, with or without sample-size readjustment, be provided.
- Trial population The number of participants in the best case scenario are considered necessary for randomization, are 105 participants to achieve minimum 60 completers in the FSMP group and 30 in the placebo group. In a revised scenario following potential sample-size readjustment, 170 participants are considered necessary for randomization to achieve 100 completers in the FSMP group and 50 completers in placebo group.
- Chronic kidney disease ⁇ Male or female 18-75 years ⁇ CKD stage 3b-5 with estimated glomerular filtration rate ⁇ 45 ml/min/1.73m2; including people on hemodialysis: 1/3 on hemodialysis, 1/3 will have eGFR ⁇ 20 mL/min/1.73 m2, and 1/3 will have eGFR 20-45 mL/min/1.73 m2 ⁇ No history of kidney transplantation ⁇ BMI 18-30 kg/m2 ⁇ Patient is followed at the recruiting nephrology departments ⁇ For women of childbearing age, at least one method of contraception is recognized as effective ⁇ Adherence to recommended diet/protein content (according to national/international standards followed) Exclusion criteria: Patients with progressive inflammatory, infectious, cardiovascular or neoplastic disease (per investigator assessment) Patients refusing a dietary follow-up Patients having a planned transplant or new-onset dialysis in the next 6 months.
- Test product is a specific synbiotic blend combined with a Intervention gut/kidney energetic substrate (e.g.
- Test product is provided in a powder format
- Dosage Reference control A placebo matching to the test product is used as control (canola oil and maltodextrin having the caloric equivalent)
- the reference control is provided in powder format.
- the daily dose (a total of X g) is split in two dosages daily and is titrated by mixing the product, delivered in a sachet/stickpack, in the desired cold drink (in minimum 100 mL of e.g., water, milk, orange juice, soft-drinks) or in the desired cold semi-solid product (in minimum 100 mL of e.g., yoghurt, cottage cheese, porridge, pudding, soups), twice a day with a meal
- the product is titrated as follows: Week 1 Week 2 Week 3 + Morning 1/3 of full dose 2/3 of full dose Full dose (1 (e.g., sachet/stickpack breakfast) ) Afternoon 1/3 of full dose 2/3 of full dose Full dose (1 (e.g., sachet/stickpack lunch) )
- One sachet/stickpack contains 10-15 g of CmKD Dosing Regimen and
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