EP4558526A1 - Binding molecules targeting il-35r - Google Patents
Binding molecules targeting il-35rInfo
- Publication number
- EP4558526A1 EP4558526A1 EP23758372.9A EP23758372A EP4558526A1 EP 4558526 A1 EP4558526 A1 EP 4558526A1 EP 23758372 A EP23758372 A EP 23758372A EP 4558526 A1 EP4558526 A1 EP 4558526A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- binding
- vhh
- antigen
- cdrs
- molecule
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2866—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for cytokines, lymphokines, interferons
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P29/00—Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
- A61P37/06—Immunosuppressants, e.g. drugs for graft rejection
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2827—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against B7 molecules, e.g. CD80, CD86
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/22—Immunoglobulins specific features characterized by taxonomic origin from camelids, e.g. camel, llama or dromedary
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/33—Crossreactivity, e.g. for species or epitope, or lack of said crossreactivity
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/35—Valency
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/52—Constant or Fc region; Isotype
- C07K2317/524—CH2 domain
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
- C07K2317/64—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising a combination of variable region and constant region components
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
- C07K2317/75—Agonist effect on antigen
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
- C07K2317/76—Antagonist effect on antigen, e.g. neutralization or inhibition of binding
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
- C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/30—Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto
Definitions
- the present invention relates to binding molecules that bind both the IL-12R ⁇ 2 and gp130 receptor subunits of the IL-35 receptor (IL-35R).
- the present invention further relates to the use of such binding molecules in treatment and diagnosis.
- the binding molecules are particularly useful in suppressing or reducing unwanted immune responses. They may also be used to induce immune tolerance.
- IL-35 is a member of the Interleukin- 12 (IL-12) family of cytokines.
- the IL-12 family of cytokines is unusual as the cytokines in the family are heterodimeric each consisting of two different polypeptide chains.
- Each member of the IL-12 family comprises an a chain, with a helical structure similar to type 1 cytokines like IL-6, and a ⁇ -chain structurally related to the extracellular region of Type 1 cytokine receptors like soluble IL-6 receptor.
- Different members of the IL- 12 family overlap with each other structurally in the sense that they have the same chain for one of the two chains of the heterodimer.
- Interleukin- 12 consists of an a chain (IL-12p35) and a P chain (IL-12p40) encoded respectively by two separate genes, IL-12A and IL-12B.
- Other IL-12 family members are IL- 23 (consisting respectively of the a and ⁇ chains IL-23pl9 and IL-12p40), IL-27 (consisting respectively of the a and ⁇ chains IL-27p28 and Ebi3) and IL-35 (consisting respectively of the a and ⁇ chains IL-12p35 and Ebi3).
- IL-35 therefore shares an a chain with IL-12 and a P chain with IL-27.
- the IL- 12 family cytokines each recruit two receptor subunits to form a tripartite signalling assembly of the cytokine and the two receptor subunits.
- the receptor for the cytokine is effectively the two receptor subunits, but the two receptor subunits do not usually exist together in the absence of the cytokine, only being brought together by the cytokine.
- IL-12 is thought to first bind the high affinity IL-12R ⁇ 2 and then IL-12R ⁇ 1 is recruited to create the tripartite signalling assembly of IL-12, IL-12R ⁇ 1, and IL-12R ⁇ 2.
- IL-23 recruits IL-12R ⁇ 1 and IL-23R ⁇ receptor subunits to form a tripartite signalling assembly of IL-23, IL-12R ⁇ 1 and IL-23R ⁇ .
- IL-27 recruits IL-27R ⁇ and gp130 receptor subunits to form a tripartite signalling assembly of IL-27, IL-27R ⁇ and gp130.
- IL-35 is unusual in that is able to form a tripartite signalling assembly with IL-12R ⁇ 2 and gp130, but also tripartite signalling assemblies with IL-35 and two IL-12R ⁇ 2 receptors subunits or IL-35 with two gp130 receptor subunits are reported.
- the different IL-12 family cytokines therefore overlap in the receptor subunits recruited to the tripartite signalling assembly.
- the tripartite signalling assemblies formed by IL-12 and IL-23 receptors both include the IL-12R ⁇ 1 subunit.
- the tripartite signalling assemblies formed by IL- 12 and IL-35 both include the IL-12R ⁇ 2 subunit.
- Signalling via the assembled tripartite signalling assemblies involves Janus kinases (JAKs), with the different receptors varying in terms of which STAT proteins are involved in signalling.
- JAKs Janus kinases
- IL- 12 The different cytokines in the IL- 12 family also have different functional roles. IL- 12, IL-23, and IL-27 are thought to promote immune responses. IL-35 is thought to have a role in inhibiting immune responses, tolerance induction and immune system maintenance mediated via regulatory B and T cells, such as iTr35 cells. IL-35 is reported to increase the expression of the largely anti- inflammatory cytokine IL- 10. IL-35 is endogenously produced as a non-covalent heterodimer, which proves difficult to produce and purify recombinantly, requiring co-expression of both receptor units in the same cell with formation of significant proportions of homodimers relative to the heterodimeric IL-35. IL-35 is often produced recombinantly as a single chain variant, fused to the Fc domain and extensive studies comparing the wild-type non-covalent untagged IL-35 versus the single chain variant are lacking.
- IL-35 itself is difficult to produce and purify in large quantities meaning that the production of IL-35 and optimised variants for use in therapy is difficult.
- the present invention provides binding molecules that are able to act as IL-35 agonists which do not typically suffer such difficulties in their production. That is because, rather than being based on IL-35 itself, they bind to the receptor subunits that make up the IL-35 receptor.
- the present invention provides binding molecules that are able to bind both the IL-12R ⁇ 2 receptor and the gp130 receptor subunit. IL-35 assembles both the IL-12R ⁇ 2 receptor and the gp130 receptor subunit into atripartite signalling complex.
- the IL-12R ⁇ 2 receptor and the gp130 receptor subunit are only brought together by the action of IL-35 usually, the IL-12R ⁇ 2 receptor subunit and the gp130 receptor subunit can be thought of as together representing the IL-35 receptor (IL-35R).
- IL-35R IL-35 receptor
- binding molecules of the present invention can modulate an IL-35R. It is believed that the inventors for the present application are the first to produce antibody binding molecules able to bind both gp130 and IL-12R ⁇ 2, leading to downstream signalling.
- the binding molecules of the present invention may display a number of advantages. For instance, the binding molecules typically have good EC 50 values. The binding molecules also may show potent activity in terms of phosphorylation of STAT protein, particularly in respect of phosphorylation of STAT3 protein which is part of the downstream activation pathway. Binding molecules of the present invention may also display the ability to induce a high level of IL- 10 secretion.
- binding molecules of the present invention can act as agonists of the IL-35R.
- the binding molecules of the present invention which are agonists of the IL-35 receptor can be used to suppress or reduce immune responses. That can be helping in treating autoimmune and inflammatory responses.
- the binding molecules are also useful in inducing immune tolerance.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- the present invention also provides a pharmaceutical composition comprising a binding molecule of the present invention.
- binding molecule or pharmaceutical composition of the present invention for use is a method of treatment of the human or animal body.
- binding molecule or pharmaceutical composition of the present invention for use in treating or preventing an autoimmune or inflammatory disorder or inducing immune tolerance.
- the present invention also provides a method of treating or preventing an autoimmune or inflammatory disorder or inducing immune tolerance comprising a binding molecule or pharmaceutical composition of the invention to a subject in need thereof.
- the present invention provides a method for detecting association of the IL-12R ⁇ 2 and gp130 receptor subunits comprising: (a) contacting a candidate molecule with a cell expressing modified versions of IL-12R ⁇ 2 and gp130 receptor subunits which have been modified so when they associate a detectable signal is produced; (b) detecting the signal, if present, optionally when the magnitude of the signal is measured.
- Figure 1 Shows the ability of selected anti-gp130 and anti-IL-12R ⁇ 2 VHH antibodies to compete with IL-6 or IL-12 signaling.
- HEK-Blue IL- 12 reporter cells were incubated with different dilutions of periplasmic extracts containing anti-IL-12R ⁇ 2 VHHs prior to addition of recombinant human IL- 12.
- IL- 12 signaling activity was determined by measuring the levels of secreted embryonic alkaline phosphatase in the cell culture medium.
- the Figure corresponds to Table 8, here clones with various IL-12 competition properties are depicted as an illustrative example of the results obtained.
- Figure 2 Shows the ability of selected anti-gp130/IL-12R ⁇ 2 bispecific VHHs to induce gp130 and IL-12R ⁇ 2 heterodimerisation and STAT phosphorylation.
- Figure 3 Shows the ability of selected anti-gp130/IL-12R ⁇ 2 bsVHH-Fc to induce gp130 and IL-12R ⁇ 2 heterodimerisation and STAT phosphorylation.
- HEK-Blue IL-12 reporter cells which express both gp130 and IL-12R ⁇ 2, were incubated with purified bsVHH-Fc, IL- 12, IL-6 for 30 minutes. Then, cells were lysed and analysed by western blotting for phospho (Tyr705)- STAT3 (pSTAT3) activation. The graph depicts the quantified band intensity of pSTAT3 scaled to IL- 6.
- FIG. 4 Evaluation of bispecific antibody formats -
- A Overview of the bispecific antibody formats applied to construct bispecific anti-gp130/IL-12R ⁇ 2 antibodies.
- B pSTAT3 activation by bivalent “gp130-IL-12R ⁇ 2” and “IL-12R ⁇ 2-gp130” ordered bsVHH-Fc combining anti-gp130 VHH 18439 and anti-IL-12R ⁇ 2 VHH 20422.
- HEK-Blue IL- 12 reporter cells were stimulated for 30 minutes with indicated bsVHH-Fc followed by pSTAT3 analysis by flow cytometry.
- C pSTAT3 activation by bsVHH-Fc-3 constructed with varying number of GGGGS (G4S) repeats linking gp130 and IL-12R ⁇ 2 VHH.
- HEK-Blue IL-12 reporter cells were stimulated for 30 minutes with indicated bsVHH-Fc followed by pSTAT3 analysis by flow cytometry.
- D pSTAT3 activation by selected monovalent knob- into-hole bispecific VHH-Fc constructs, compared to bsVHH-Fc-3.
- HEK-Blue IL-12 reporter cells were stimulated for 30 minutes with indicated bsVHH-Fc followed by pSTAT3 analysis by flow cytometry.
- Figure 5 Shows the ability of anti-gp130/IL-12R ⁇ 2 VHH-Fc to induce STAT phosphorylation in a T cell line - Jurkat T cells with stable gp130-IRES-mCherry and IL-12R ⁇ 2- IRES-ZsGreen expression were stimulated for 30 minutes with anti-gp130/IL-12R ⁇ 2 bsVHH-Fcs. The percentage of pSTAT3 positive cells was analysed by flow cytometry within the cell population positive for ZsGreen and mCherry.
- A The graph depicts the maximal pSTAT3 efficacy within the dose-range of 0.01-10 nM for anti-gp130/IL-12R ⁇ 2 bsVHH-Fcs designed in a second design wave.
- B Dose- response pSTAT3 activation by selected anti-gp130/IL-12R ⁇ 2 VHH-Fcs.
- Figure 6 Shows the ability of anti-gp130/IL-12R ⁇ 2 to induce IL-10 in a T cell line - Jurkat T cells with stable gp130-IRES-mCherry and IL-12R ⁇ 2-IRES-ZsGreen expression were stimulated for 24 hours with bsVHH-Fc-71, KiH-8 or control protein bsVHH-Fc-30 at different doses. As positive control, cells were stimulated with PMA and ionomycin. IL-10 secretion was measured by ELISA.
- Figure 7 Shows dose-dependent STAT3 activation and IL-10 secretion for selected anti- gp130/IL-12R ⁇ 2 bsVHH-Fc molecules in a T cell line - Jurkat T cells with stable gp130-IRES- mCherry and IL-12R ⁇ 2-IRES-ZsGreen expression were stimulated for 30 minutes (A, C) or 24 hours (B) with anti-gp130/IL-12R ⁇ 2 bsVHH-Fc molecules.
- a and C The percentage of pSTAT3 positive cells was analysed by flow cytometry within the cell population positive for ZsGreen and mCherry. (GxS)n indicates linker length between the 2 VHHs.
- B IL-10 secretion in the supernatants was measured by ELISA (positive control: PMA/Iono(mycin).
- Figure 8 Shows the ability of biparatopic bispecific anti-gp130/IL-12R ⁇ 2 antibodies to induce STAT3 activation.
- a and C Jurkat T cells with stable gp130-IRES-mCherry and IL-12R ⁇ 2- IRES-ZsGreen expression were stimulated for 30 minutes with indicated single or combined bsVHH- Fc or KiH molecules. The percentage of pSTAT3 positive cells was analysed by flow cytometry within the cell population positive for ZsGreen and mCherry.
- B Schematic representation of the biparatopic bispecific antibody formats of KiH-71/77 and KiH-107/108.
- Figure 9 Shows dose-dependent STAT3 activation and IL-10 secretion for selected anti- gp130/IL-12R ⁇ 2 bsVHH-Fc molecules in primary activated CD4 T cells -
- Figure 10 Shows induction of IL-10 secretion by selected anti-gp130/IL-12R ⁇ 2 bsVHH- Fc molecules in primary activated CD4 T cells -
- Primary human CD4 T cells were enriched from three different human peripheral blood mononuclear cell donors and activated with anti-CD3/CD28 antibodies and recombinant IL-2 for 48 hours, followed by a 24 hour rest period without activation stimuli. Subsequently, the cells were stimulated with bsVHH-Fc-77 at different concentrations for 3 and 6 days.
- Figure 11 Provides the amino acid sequences of bsVHH-Fc-77, bsVHH-Fc-78, bsVHH- Fc-84, bsVHH-Fc-96, and bsVHH-Fc-71 but with constant regions of Durvalumab (comprising the CH2CH3 regions of that constant region, but not the CHI region).
- the CDR sequences of the VHH regions are shown underlined.
- Those five constructs and binding molecules based on the CDR combinations that they comprise represent preferred binding molecules of the present invention. For instance, versions where the VHH domains have been humanised, but retain the same CDRs represent preferred molecules of the present invention.
- Constructs based on the combination of CDRs in bsVHH-Fc-77 are especially preferred.
- Figure 11 Provides the amino acid sequences of bsVHH-Fc-77, bsVHH-Fc-78, bsVHH- Fc-84, bsVHH-Fc-96, and bsVHH-Fc-71, but with the constant regions of Durvalumab (comprising the CH2CH3 regions of that constant region, but not the CHI region).
- the CDR sequences of the VHH regions are shown underlined.
- Those five constructs and binding molecules based on the CDR combinations that they comprise represent preferred binding molecules of the present invention. For instance, versions where the VHH domains have been humanised, but retain the same CDRs represent preferred molecules of the present invention.
- Constructs based on the combination of CDRs in bsVHH-Fc-77 are especially preferred.
- the present invention provides binding molecules that can specifically bind the IL-12R ⁇ 2. It also provides binding molecules that can specifically bind gp130.
- a binding molecule of the present invention can bind both IL-12R ⁇ 2 and gp130.
- the binding molecule of the present invention can bind both IL-12R ⁇ 2 and gp130, with the binding molecule able to act as an agonist of the IL-35 receptor.
- Such binding molecules able to bind both IL-12R ⁇ 2 and gp130 may be said to be at least bispecific binding molecules.
- the molecules are preferably able to bind both IL-12R ⁇ 2 and gp130 at the same time.
- the binding molecule is biparatopic in respect of IL-12R ⁇ 2. In some embodiments, the binding molecule is biparatopic in respect of gp130. In some embodiments, the binding molecule is biparatopic in respect of IL-12R ⁇ 2 and is also biparatopic in respect of gp130.
- the binding molecules provided are not IL-35 itself or a variant thereof.
- the binding molecule of the invention is an antibody.
- antibody as used herein is not limited to the “classical” structure of the four chain structure of an IgG antibody in humans comprising two light and two heavy chains. However, such structure antibodies are also provided, both in the case of providing either specificity individually or a bispecific antibody where each arm of the bispecific targets one of the IL-12R ⁇ 2 and gp 130 subunits.
- antibody though covers non-naturally occurring antibody formats and those are specifically envisioned to form part of the invention. In embodiments where a binding molecule comprises antibody-based sequences, the overall binding molecule may be simply referred to as an antibody.
- antibody specifically includes a single chain antibody and a binding molecule comprising such a single chain antibody.
- a binding molecule of the present invention may be or comprise a single chain antibody that is specific for IL-12R ⁇ 2.
- a binding molecule of the present invention may be or comprise a single chain antibody that is specific for gp130.
- a binding molecule of the present invention may also comprise non-antibody sequences, for example it may comprise binding sites that are not antibody based.
- the binding molecule is characterised as being, or comprising, a single domain binding regions.
- the binding molecules comprises at least a single domain binding region for IL-12R ⁇ 2 or gp 130.
- the binding molecule comprises at least one binding domain for IL-12R ⁇ 2 and at least one binding domain for gp130, where those binding domains are single binding domain binders.
- a binding molecule may have more than one binding site for IL-12R ⁇ 2. In one embodiment, all of the binding sites of the binding molecule specific for IL-12R ⁇ 2 are the same. In another embodiment, the binding molecule may comprise different binding sites for IL-12R ⁇ 2, for instance each recognising a different epitope of IL-12R ⁇ 2, so be, for instance, biparatopic in respect of IL-12R ⁇ 2. In one embodiment, a binding molecule may have more than one binding site for gp130. In one embodiment, all of the binding sites of the binding molecule specific for gp130 are the same.
- the binding molecule may comprise different binding sites for gp130, for instance each recognising a different epitope of gp130, so be, for instance, biparatopic in respect of gp130.
- Single domain binders that may be employed as part of binding molecules of the present invention include, for instance, non-Ig engineered protein scaffolds such as darpins, affibodies, adnectins, anticalin proteins, or peptides and the like.
- sdB single binding domain binders
- sdBs single binding domain binders
- sdAb single domain antibodies
- HCAb heavy chain only antibodies
- VHH antigen-binding domains is an especially preferred embodiment.
- a single-domain antibody (sdAb) is an antibody fragment consisting of a single monomeric variable antibody domain. Like a whole antibody, sdAb is able to bind selectively to a specific antigen.
- sdAb may be antibody fragments that can be engineered from single monomeric variable domains of either camelids’ heavy-chain antibody (VHH) or cartilaginous fishes’ IgNAR (VNAR), or be developed from camelized human antibodies. Any such sdAbs may be employed. Especially preferred sdAbs are VHH domains.
- a binding molecule of the present invention may comprise at least two sdAb domains, with at least one specific for IL-12 ⁇ 2 and at least one specific for gp 130. In one embodiment, the binding molecule may comprise at least two sdAb domains on the same polypeptide.
- an antibody of the present invention may be a molecule that comprises a single domain antibody or single domain antibodies where the overall valency of the binding molecule is at least two.
- an antibody of the present invention may comprise two such single domain antibodies joined together as part of the overall antibody.
- a binding m olecule of the present m ay compri se VHH binding d omains as sdAbs.
- SdAbs from organisms such as Camelids, sharks, and other cartilaginous fish that produce heavy chain-only antibodies may be employed.
- the single-domain variable fragments of these heavy chain- only antibodies are termed VHHs or nanobodies or sdAb.
- VHHs retain the immunoglobulin fold shared by antibodies, using three hypervariable loops, CDR1, CDR2 and CDR3, to bind to their targets.
- a VHH fragment e.g., NANOBODY®
- NANOBODY® is a recombinant, antigen-specific, single-domain, variable fragment derived from camelid heavy chain antibodies.
- a binding molecule of the present invention is, or comprises, at least one VHH domain antibody specific for a IL-12R ⁇ 2 subunit, and at least one VHH domain antibody specific for a gp130 receptor subunit.
- the present application sets out examples of preferred VHH domains and those VHH domains may be employed in any suitable binding molecule format set out herein.
- a binding molecule of the present invention comprises:
- a binding molecule comprises two polypeptides where each polypeptide comprises at least a binding site for IL-12R ⁇ 2 or gp 130. In one embodiment, a binding molecule comprises two polypeptides where each polypeptide comprises at least one binding site for IL-12R ⁇ 2 and at least one binding sites for gp130. In one embodiment, one polypeptide comprises a single binding site for IL-12R ⁇ 2 and a single binding site for gp130, with the second polypeptide also comprising a single binding site for IL-12R ⁇ 2 and a single binding site for gp 130. In one embodiment, the binding site for IL-12R ⁇ 2 is the most N-terminal binding site of the polypeptide.
- the binding sites for gp130 is the most N-terminal binding site of the polypeptide.
- the binding sites are preferably VHH binding domains.
- each polypeptide comprises a CH2CH3 constant region.
- a binding molecule comprises two polypeptides, where each of the two polypeptides is different so that the binding molecule is heterodimeric.
- one polypeptide comprises at least one IL-12R ⁇ 2 binding site, but not a binding site for gp130, with the other polypeptide comprising at least one binding site for gp130, but not IL-12R ⁇ 2.
- one polypeptide comprises a single binding domain which is a binding domain specific for IL-12R ⁇ 2 and the other polypeptide comprises a single binding domain which is a binding domain specific for gp 130.
- each polypeptide comprises two such binding sites.
- each polypeptide comprises three such binding sites.
- the binding sites are preferably VHH binding domains.
- each polypeptide comprises a CH2CH3 constant region.
- the binding molecule also preferably comprises a hinge region.
- the two constant regions comprise a sequence modification either promoting heterodimer formation or allowing purification of the heterodimer.
- a binding molecule comprises a polypeptide with at least two binding sites
- the binding sites may be separated by a linker.
- the linker comprises units of the sequence GGGGS.
- the linker comprises (GGGGS) X where x is a value from 1 to 8. In one embodiment, X has a value of from 2 to 8. In one embodiment, x has a value of from 3 to
- x has a value of 3, 4, or 5. In a preferred embodiment, x has a value of 4, 5, or
- x has a value of 5. In one embodiment, x has a value of 7.
- a binding molecule of the invention comprises two polypeptides, with each polypeptide comprising two VHH domains and an Fc region so that the two polypeptides may form an Fc region dimer.
- each polypeptide comprises a VHH domain specific for IL-12R ⁇ 2 and a VHH domain specific for gp 130.
- the VHH domains specific for IL-12R ⁇ 2 in each of the two polypeptides bind a different epitope meaning the binding molecule is biparatopic for IL-12R ⁇ 2.
- the VHH domains specific for gp130 in each of the two polypeptides bind a different epitope meaning the binding molecule is biparatopic for gp 130.
- a binding molecule is biparatopic for both gp130 and IL-12R ⁇ 2.
- there may be a linker between the two VHH domains of each polypeptide such as the linkers outlined about.
- Figures 10 and 11 provide examples of preferred binding molecules.
- a binding molecule of the present invention corresponds to one of those shown in Figures 10 and 11, but where the VHH domains have been humanised, though with the CDRs shown retained.
- variants of such molecules also represent binding molecules of the present invention.
- a variant will retain the ability to bind to the IL-35 receptor.
- a variant will retain the ability to activate pSTAT3 signalling.
- a variant will be able to induce IL-12 secretion.
- the present invention provides and employs binding molecules that are able to bind to the IL- 12R ⁇ 2 receptor subunit.
- the present invention provides and employs binding molecules that are able to bind to the gp130 receptor subunit.
- the binding molecules are able to bind to the IL-12R ⁇ 2 and gp130 subunits.
- the binding molecule will be able to bind to the IL-35R subunit or subunits on the surface of a cell.
- a binding molecule is able to bind to a human IL- 12R ⁇ 2 receptor subunit. In one preferred embodiment, a binding molecule is able to bind to the mouse IL-12R ⁇ 2 receptor subunit.
- the amino acid sequence of the human and mouse IL-12R ⁇ 2 receptor subunits are provided below:
- SEQ ID NO: 3128 sequence of the human IL-12R ⁇ 2 (NP 001550.1, interleukin-12 receptor subunit beta-2 isoform a precursor [Homo sapiens]):
- SEQ ID NO: 3129 sequence of mouse IL-12R ⁇ 2 (NP 032380.1, interleukin- 12 receptor subunit beta-2 isoform 1 precursor [Mus musculus]):
- a binding molecule is able to bind to a human gp130 receptor subunit. In one preferred embodiment, a binding molecule is able to bind to the mouse gp130 receptor subunit. In one preferred embodiment, a binding molecule is able bind to the human and mouse gp130 receptor subunits. In an alternative embodiment, a binding molecule is able bind to the human gp130 receptor subunit, but not the mouse gp130 receptor.
- the amino acid sequence of the human and mouse gp130 receptor subunits are provided below:
- SEQ ID NO: 3130 sequence of the human gp130 (NP 002175.2, Interleukin-6 receptor subunit beta [Homo sapiens]):
- SEQ ID NO: 3131 sequence of mouse gp130 (NP 034690.3, Interleukin-6 receptor subunit beta [Mus musculus]):
- a binding molecule does not compete with IL- 12 for binding to a IL-12R[32 receptor subunit.
- the binding molecule of the present invention does not inhibit the ability of IL- 12 to form a tripartite signalling assembly with the IL-12R ⁇ 2 and IL-12R ⁇ 1 receptor subunits.
- a binding molecule of the present invention is able to compete with IL-12 for binding to the IL-12R ⁇ 2 receptor subunit.
- a binding molecule does not compete for binding with IL- 6. In a preferred embodiment, a binding molecule does not compete for binding with IL-6 family members. In one preferred embodiment, the overall binding molecule does not compete for binding with IL-6. In a particularly preferred embodiment, it does not compete for binding with IL-6 family members in general.
- valency of a binding molecule as used herein denotes the number of antigen-binding sites that the binding molecule comprises.
- a binding molecule may be said to have a valency for a particular target.
- a binding molecule of the invention may have only one binding site for IL-12R ⁇ 2.
- it may have two binding sites for IL-12R ⁇ 2.
- it may have three binding sites for IL-12R ⁇ 2.
- a binding molecule of the invention may have only one binding site for gp130.
- it may have two binding sites for gpI30.
- it may have three binding sites for gpI30.
- a binding molecule of the present invention may have the same number of binding sites for IL-12R ⁇ 2 as gp130. For example, it may have one binding site for each. In another embodiment, it may have two binding sites for each. In a further embodiment, it may have three binding sites for each. In a preferred embodiment, where a binding molecule of the invention has such numbers of binding sites, the binding sites are VHH domain binding sites.
- the strength of binding of an individual antigen-binding site to an IL-12R ⁇ 2 or gp130 polypeptide may be referred to as the “affinity” of the binding site for IL-12R ⁇ 2 or gp130 polypeptide.
- the overall strength of binding of a binding molecule is often also referred to as the affinity of the binding molecule, where the binding molecule has more than one binding site, the strength of binding may be referred to using the term avidity, which reflects the overall strength of binding when all of the binding sites of the binding molecule are taken into account.
- the affinity of an individual binding site of the overall binding molecule may be determined by measuring it for the individual VHH binding domain on its own.
- a binding site of the present invention may be said to specifically bind an IL-12R ⁇ 2 receptor subunit.
- a binding site of the present invention may be said to specifically bind a gp130 receptor subunit.
- Specific binding may constitute binding to an IL-12R ⁇ 2 or gp130, but not significantly binding to other polypeptides.
- a binding domain may have a KD affinity value for IL-12R ⁇ 2 which is about 400 nM or smaller, 200 nM or smaller such as about 100 nM, 50 nM, 20 nM, 10 nM, 1 nM, 500 pM, 250 pM, 200 pM, 100 pM or smaller.
- the KD is 50 pM or smaller.
- the KD of an individual antigen-binding site of a binding molecule of the present invention may be less than 1 pM, less than 750 nM, less than 500 nM, less than 250 nM, less than 200 nM, less than 150 nM, less than 100 nM, less than 75 nM, less than 50 nM, less than 10 nM, less than 1 nM, less than 0. 1 nM, less than 10 pM, less than 1 pM, or less than 0. 1 pM.
- the KD is from about 0.1 pM to about 1 pM. It may be an individual antigen-binding domain has such KD.
- KD affinity value KD is the equilibrium dissociation constant, a calculated ratio of Koff/Kon, between the antibody and its antigen.
- the association constant (Kon) is used to characterise how quickly the antibody binds to its target.
- the dissociation constant (Koff) is used to measure how quickly an antibody dissociates from its target.
- a binding molecule or individual binding domain may have any of the above KD values, but for gp130.
- Binding including the presence or absence of binding, can be determined using a variety of techniques known in the art, for example but not limited to, equilibrium methods (e.g., enzyme-linked immunoabsorbent assay (ELISA); KinExA, Rathanaswami et al. Analytical Biochemistry, Vol.
- ELISA enzyme-linked immunoabsorbent assay
- KinExA Rathanaswami et al. Analytical Biochemistry, Vol.
- Binding to an IL-12R ⁇ 2 or gp130 may be measured using cells expressing an IL-12R ⁇ 2 or gp 130 on their surface as discussed later in relation to assays and also in the Examples of the present application.
- IL-12R ⁇ 2 and gp130 The ability of a binding molecule of the present invention to bring together IL-12R ⁇ 2 and gp130 may be measured.
- an assay which uses modified IL-12R ⁇ 2 and gp130 that produce a detectable signal when brought together may be employed, such as the luciferase-based assay used in the Examples of the present application.
- the binding molecule comprises a VHH binding- domain or domains.
- all of the binding domains are VHH domains.
- Table 1 of the present application provides examples of particularly preferred VHH antibodies, as well as particularly preferred CDR “sets” of three CDRs which may be employed in a binding molecule.
- VHH domain antibodies comprise three CDRs, CDR1, CDR2, and CDR3. They do not typically comprise a light chain. Reference to a “set of CDRs” in relation to a VHH domain antibody refers to the CDR1, CDR2, and CDR3 of that VHH domain.
- Table 1 provides examples of VHH binding domains and CDR sets that are provided.
- the first antibody described in Table 1 is a VHH binding domain of SEQ ID NO: 1, with the CDR1, CDR2, and CDR3 of the antibody provided as SEQ ID Nos: 211, 212, and 213 respectively.
- the CDR1, CDR, and CDR3 sequences of SEQ ID NOs: 211, 212, and 213 may be therefore referred to as a “set” of CDR sequences.
- VHH domains are humanised versions of those shown in Table 1, with the CDR sequences either remaining unchanged or representing variant CDR sequences as defined herein.
- the present invention describes a binding molecule comprising, or consisting of, a VHH domain as set out in Table 1, hence a VHH domain having, or comprising, the sequence of any one of SEQ ID NOs 1 to 209.
- the present invention also provides a binding molecule comprising, or consisting of, a variant or competing VHH binding domain of any those set out in Table 1.
- the present invention further provides a binding molecule comprising a humanised version of one of the VHH domains of Table 1, so a VHH domain where the framework regions have been modified or substituted so that they are human sequences. Variants and competing VHH domains of those set out in Table 1 may also be humanised.
- the present invention also provides a binding molecule comprising a “set” of CDRs from Table 1, so the sets of CDR1, CDR2, and CDR3 provided in Table 1 which have the various sequences set out as SEQ ID NOs: 211 to 837.
- the present invention also provides a binding molecule comprising a VHH binding domain where the CDRs are a set of three CDRs from Table 1, but the framework regions of the VHH binding domain are human.
- Examples of particularly preferred sets of three CDRs for a VHH domain specific for IL- 12R ⁇ 2 include those of the clones 20422, 20432, 21053, and 21060. Also preferred are variants of those specific sets of CDRs. Also preferred are VHH binding domains that are able to compete for binding to IL-12R ⁇ 2 with the CDR sets clones 20422, 20432, 21053, and 2106. Particularly preferred are the sets of three CDRs from the clones 20422 and 20432.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 364/365/366.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 412/413/414.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 796/797/798.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 835/836/837.
- An example of a particularly preferred CDR set is one comprising SEQ ID NOs: 364/365/366.
- An example of a particularly preferred CDR set is one comprising SEQ ID NOs: 412/413/414. Variants and competing versions to any of the CDR sets mentioned in this paragraph are also preferred.
- particularly preferred CDR sets are those of clones 20427, 20378, 20407, 20418, 20370, 20389, 20391, 20404, and 21061.
- Examples of particularly preferred CDR sets are those of clones 20427, 20418, 20407, and 20391.
- An especially preferred CDR set is that of 20391.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 598/599/600.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 604/605/606.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 652/653/654.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 655/656/657.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 730/731/732.
- An example of a preferred CDR set is one comprising SEQ ID Nos:736/737/738.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 739/740/741.
- An example of a preferred CDR set is one comprising SEQ ID Nos:772/773/774.
- An example of a preferred CDR set is one comprising SEQ ID Nos: 811/812/813.
- An example of a particularly preferred CDR set is one comprising SEQ ID Nos: 598/599/600.
- An example of a particularly preferred CDR set is one comprising SEQ ID Nos: 652/653.654.
- An example of a particularly preferred CDR set is one comprising SEQ ID Nos: 655/656/657.
- An example of a particularly preferred CDR set is one comprising SEQ ID Nos: 739/740/741.
- An example of an especially preferred CDR set is one comprising SEQ ID Nos: 739/740/741.
- a preferred VHH is that from clones 20422, 20432, 21053, and 2106. Particularly preferred are the VHHs from the clones 20422 and 20432. Examples of preferred VHHs are those of clones 20427, 20378, 20407, 20418, 20370, 20389, 20391, 20404, and 21061. Examples of particularly preferred VHHs are those of clones 20427, 20418, 20407, and 20391. An example of an especially preferred VHH is that of clone 20391. In one embodiment, preferred VHHs are those corresponding to the clones mentioned above, as well as variants, and competing versions thereof.
- a preferred VHH is that from clones 20407, 20432, or 20391 or a variant version and in particularly a humanised version.
- An especially preferred VHH is that from 20407 or a variant version and in particular a humanised version.
- a binding molecule comprises the CDR set from one of clones 20407, 20432, or 20391 or a variant version of those CDRs.
- a VHH employed is from the 2032 clone, or a variant thereof, particularly a humanised version.
- a VHH domain specific for IL-12R ⁇ 2 of a binding molecule of the present invention comprises the CDR1, CDR2, and CDR3 sequences of SEQ ID Nos 652/653/654 or a variant set.
- variant sets have no more than three amino acid sequence changes per CDR. In a more preferred embodiment, they have no more than two such amino acid sequence changes. In an even more preferred embodiment, they have only a single amino acid sequence changes.
- the binding molecule is biparatopic for IL-12R ⁇ 2
- it will comprise CDR set combination from one of the following pairs of clones 20407/20391, 20407/20432, and 20432/20391 or variant CDR sets.
- it will comprise VHH domains from one of the following pairs of clones 20407/20391, 20407/20432 which have been humanised.
- a particularly preferred combination is 20407/20391, as well a a binding molecule where both of the binding sites specific for IL-12R ⁇ 2 have the CDR sets from the 20407/20391 combination.
- the present invention also provides variants of those specific sequences which may be also employed in binding molecules of the present invention.
- the present invention also provides binding molecules and VHH domains which are able to compete for target binding with binding molecules comprising the specific VHH domains or the specific sets of CDRs set out herein.
- Variants of specific sequences in relation to IL-12R ⁇ 2 binding are discussed further below. Variants and competing binding sites to any of the above mentioned sequences may be employed in preferred embodiments.
- the present invention provides a binding molecule comprising at least one of the specific IL- 12R ⁇ 2 CDR sets, VHH domains, variants of any of thereof, or competing versions of any of thereof.
- the present invention provides such a binding molecule which is just specific for IL-12R ⁇ 2. It also though provides binding molecules with such binding sites where they further comprise at least one binding site for gp 130.
- the binding molecule comprises a VHH binding- domain or domains.
- all of the binding domains are VHH domains.
- Table 2B of the present application provides examples of particularly preferred VHH antibodies, as well as particularly preferred CDR “sets” of three CDRs which may be employed in a binding molecule.
- VHH domain antibodies comprise three CDRs, CDR1, CDR2, and CDR3. They do not typically comprise a light chain.
- Reference to a “set of CDRs” in relation to a VHH domain antibody refers to the CDR1, CDR2, and CDR3 of that VHH domain.
- Table 2B provides examples of VHH binding domains and CDR sets that are provided.
- the first antibody describe in Table 2B is a VHH binding domain of SEQ ID NO: 840, with the CDR1, CDR2, and CDR3 of the antibody provided as 1412, 1413, and 1414 respectively.
- the CDR1, CDR, and CDR3 sequences of SEQ ID NOs: 1412/1413/1414 may be therefore referred to as a “set” of CDR sequences.
- the present invention provides a binding molecule comprising, or consisting of, a VHH domain as set out in Table 2B, hence a VHH domain having, or comprising, the sequence of any one of SEQ ID NOs: 840 to 1411.
- the present invention also provides a binding molecule comprising, or consisting of, a variant or competing VHH binding domain of any those set out in Table 2.
- the present invention further provides a binding molecule comprising a humanised version of one of the VHH domains of Table 2, so a VHH domain where the framework regions have been modified or substituted so that they are human sequences. Variants and competing VHH domains of those set out in 'fable 2 may also be humanised.
- the present invention also provides a binding molecule comprising a “set” of CDRs from Table 2, so the sets of CDR1, CDR2, and CDR3 provided in Table 2 which have the various sequences set out as SEQ ID NOs: 1412 to 3127.
- the present invention also provides a binding molecule comprising a VHH binding domain where the CDRs are a set of three CDRs from fable 2B, but the framework regions of the VHH binding domain are human.
- Preferred sets of three CDRs include those from the 18406, 19556, 18439, 19557, 18442, and 19528 clones. Particularly preferred sets of CDRs include those from the 18406 and 18439 clones. An especially preferred set of CDRs is that from the 18439 clone. Such a set of CDRs, a variant set, or a competing set may be employed in the present invention. The CDRs from the 18439 clone are particularly effective as they appear to give good results with a number of different IL-12R ⁇ 2 binding sites. In one embodiment a preferred set of CDRs is that of SEQ ID NOs: 2226/2227/2228.
- a preferred set of CDRs is that of SEQ ID NOs: 2734/2735/2736. In one embodiment a preferred set of CDRs is that of SEQ ID NOs: 1983/1984/1985. In one embodiment a preferred set of CDRs is that of SEQ ID Nos: 2704/2705/2706. In one embodiment a preferred set of CDRs is that of SEQ ID NOs: 2274/2275/2276. In one embodiment a preferred set of CDRs is that of SEQ ID NOs: 284/2843/2844. A particularly preferred set of CDRs is that of SEQ ID NOs: 2226/2227/2228. A particularly preferred set of CDRs is that of SEQ ID NOs: 1983/1984/1985. An especially preferred set of CDRs is that of SEQ ID NOs: 1983/1984/1985. Variants CDRs and CDRs sets resulting in a VHH that is able to compete with a VHH with one of those specific CDRs are also preferred.
- preferred VHH domains are those of 18406, 19556, 18439, 19557, 18442.
- particularly preferred VHH domains are those of the 18406 and 18439 clones.
- An especially preferred VHH domain is that of the 18439 clone.
- preferred VHH domains include those of SEQ ID NOs: 1112, 1281, 1031, 1271, 1128 and 1317.
- Particularly preferred VHH domains are those of SEQ ID NOs: 1112 and 1031.
- An especially preferred VHH domain is that of SEQ ID NO: 1031.
- Variant VHHs of any of those specific VHH domains are also preferred, as are competing VHH domains.
- a preferred VHH specific for gp130 is that from clones 18416, 18420, 19519, 18400 and 18439 or a variant version and in particularly a humanised version.
- An especially preferred VHH is that from 18416 or a variant version and in particular a humanised version.
- a binding molecule comprises the CDR set from one of clones 18416, 18420, 19519, 18400 and 18439 or a variant version of those CDRs.
- a VHH employed is from the 18416 clone, or a variant thereof, particularly a humanised version.
- a VHH domain of a binding molecule of the present invention comprises the CDR1, CDR2, and CDR3 sequences of SEQ ID Nos 2217/2218/2219 or a variant set.
- a VHH domain of a binding domain of the present invention comprises the CDR1/CDR2/CDR3 set of 2217/2218/2219; 2011/0212/2013; 2746/2747/2748; 2130/2131/2132; or 1983/1984/1985 or a variant set thereof.
- variant sets have no more than three amino acid sequence changes per CDR. In a more preferred embodiment, they have no more than two such amino acid sequence changes. In an even more preferred embodiment, they have only a single amino acid sequence change.
- the binding molecule is biparatopic for IL-12R ⁇ 2
- it will comprise CDR set combination from one of the following pairs of clones 19537/19539 or variant CDR sets.
- it will comprise VHH domains from one of the following pairs of clones 18416/18420; 18416/19519; 18416/18400; 18416/18439; 18420/19519; 18420/18400; 18420/18439; 19519/18400; 19519/18439 or 18400/18439 which have been humanised.
- binding molecules that comprise the CDR sets from such pairings, as well as variants thereof.
- the present invention provides a binding molecule comprising at least one of the specific gp130 CDR sets, VHH domains, variants of any of thereof, or competing versions of any of thereof.
- the present invention provides such a binding molecule which is just specific for gp130. It also though provides binding molecules with such binding sites where they further comprise at least one binding site for IL-12R ⁇ 2.
- the present invention also provides variants of those specific sequences which may be also employed in binding molecules of the present invention.
- the present invention also provides binding molecules and VHH domains which are able to compete for target binding with binding molecules comprising the specific VHH domains or the specific sets of CDRs set out herein.
- Variants of specific sequences in relation to gp130 and gp130 binding are discussed further below.
- a variant sequence will retain at least 50% of the ability to bind IL-12R ⁇ 2 or gp 130 in comparison to the specific sequence, particularly to bind IL-12R ⁇ 2 or gp30 on the cell surface.
- a variant will retain at least 60%, 70%, or 80% of the ability to bind. In another embodiment, it will retain at least 90% of the ability to bind in comparison to the specific sequence. In another embodiment, it will retain at least 95% of the ability to bind. In one embodiment, an individual binding domain may retain that degree of binfing.
- a binding molecule of the invention comprises at least one VHH domain comprising the CDR set for the IL-12R ⁇ 2 binding site and at least one VHH domain comprising the CDR set for the gp130 CDR set from those specific combinations present in the VHH binding domains of a binding molecule in Tables 11 and 15.
- Variant and competing CDR sets may be also employed.
- Preferred combinations of CDR sets from Table 11 include those of 18493 x 20422, 1840 x 20422, 18406 x 20422, and 18406 x 20432. Particularly preferred combinations are 18439 x 20422 and 18439 x 20432. An especially preferred combination is 18439 x 2042. Variant and competing versions of those CDR sets may be also employed. Preferred combinations of those from Table 15 are those of 18439 x 20427, 18439 x 20418, 18439 x 20407, and 18439 x 20391. An especially preferred combination is 18439 x 20391. Variants and competing versions of the CDR sets may be employed.
- such CDR sets are in a binding molecule of the format bsVHH-Fc.
- the binding molecule comprises two polypeptides where each polypeptide has one VHH domain of each specificity, as well as a constant region for the Fc.
- the Fc lacks Fc effector function.
- the binding molecule has the CDR sets from the 18406 and 20432.
- the binding molecule is in the format of two polypeptides, each with the VHH for one specificity, but not the other, where the constant region comprises a knob-into- hole modification as discussed herein.
- binding molecules are those that use the CDR sets from clone 18439 for the gp130 specificity and those from one of clones 20427, 20418, 20407, and 20391 for the IL-12R ⁇ 2 specificity. Variant CDRs and competing CDRs may be employed.
- the binding molecule format for those combinations may be any of those set out herein. In a particularly preferred embodiment, the format of such a binding molecule is either of the bivalent formats shown in Figure 4A.
- the binding molecule comprises two polypeptides, each polypeptide having a VHH specific for gp130 and a VHH specific for IL-12R ⁇ 2, with the two VHHs optionally joined by a linker, with the polypeptides each further comprising a hinge region, CH2 and CH3 domain.
- the constant region may be any of those set out herein.
- the binding molecule has any of the possible constant regions set out herein.
- An especially preferred combination the CDR set from clone 18439 for the gp130 specificity and the CDR set from clone 20391 for the IL-12R ⁇ 2 specificity. Variant CDR sets and competing CDR sets of those specific ones may be also employed.
- the binding molecule is in the monovalent KiH format shown in Figure 4A.
- the binding molecule comprises two polypeptides, each with the VHH for one of the specificities, with a constant region consisting of a hinge, CH2 and CH3 region, where the constant regions of the two polypeptides comprise knob-into- hole mutations favouring heterodimerization over homodimerization.
- a binding molecule comprises an antigen-binding site specific for IL-12R ⁇ 2, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively, or variants thereof.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for IL- 12R ⁇ 2, wherein the binding site comprises a VHH of clone 20407.
- a binding site specific for IL-12R ⁇ 2 is a humanised version of the VHH clone 20407.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2217/2218/2219 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 18416.
- a binding site specific for gp130 is a humanised version of the VHH clone 18416.
- the present inventors screened the combinations of VHH binding domains shown in Table 17 of the present application.
- a polypeptide was designed comprising a VHH specific for gp130 and a VHH specific for IL-12R ⁇ 2 and a Fc region so when expressing a binding molecule comprising two such polypeptides was generated. All of the permutations shown in Table 17 were generated and the permutations all represent part of the present invention.
- the present invention provides a binding molecule comprising two polypeptides, each polypeptide comprising a VHH specific for gp130 comprising a set of three CDRs corresponding to one of those indicated in Table 17 and a VHH specific for IL-12R ⁇ 2 having a set of three CDRs that come from the same binding molecule is Table 17.
- a binding molecule comprises two polypeptides, wherein each polypeptide comprises a VHH domain specific for gp130 comprising the CDRs of the 18033 clone and a VHH domain specific for IL-12R ⁇ 2 comprising the CDRs of the 20407 clone, so effectively having the CDRs from the bsVHH-Fc-73.
- Variant CDRs may also be employed so long as the ability to bind to gp130 and IL-12R ⁇ 2 is retained. VHH domains able to compete with the specific ones used in Table 17 may also be employed.
- variants with up to 3 amino acid sequence changes per CDR are preferred.
- up to 2 amino acid sequence changes per CDR are possible.
- a single amino acid sequence change per CDR is possible.
- Preferred binding molecules based on the combinations identified in Table 17 and in particular those based on the CDRs used in the bsVHH-Fc-77, bsVHH-Fc-78, bsVHH-Fc-84, and bsVHH-Fc-96 molecules from Table 17 are discussed in the sections that follow as well as those based on bsVHH-Fc-71.
- Figures 10 and 11 also provide preferred examples of CDR sets that be employed in combination with each other.
- a binding molecule comprises an antigen-binding site specific for IL-12R ⁇ 2, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 739/740/741 as the CDR1, CDR2, and CDR3 respectively, or variants thereof.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for IL- 12R ⁇ 2, wherein the binding site comprises a VHH of clone 20407.
- a binding site specific for IL-12R ⁇ 2 is a humanised version of the VHH clone 20407.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 1983/1984/1985 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 17116.
- a binding site specific for gp130 is a humanised version of the VHH clone 18439.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- At least one antigen-binding-site specific for the gp130 subunit of the IL-35 receptor comprises a set of three CDRs which are those of SEQ ID Nos: 1983/1984/1985 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each;
- the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 739/740/741 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each.
- the binding molecule comprises a polypeptide comprising at least one antigen-binding-site specific for the gp130 subunit as defined in (i) and at least one antigen- binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the polypeptide further comprises an Lc region, such as an Lc region as defined herein.
- the binding molecule comprises two such polypeptides.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprising: (i) a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 1983/1984/1985 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 739/740/741 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- (i) to (iii) are present in that order going from N to C terminus of the polypeptide.
- the binding site of (i) and the binding site of (ii) are joined to each other in the polypeptide sequence via a linker.
- Any suitable linker may be employed, such as any set out herein.
- the linker is a GS linker.
- Examples of linkers include those of (G4S)n, wherein n is a value of 1 to 10.
- Preferred linkers include those where n has a value of 2 to 8. More preferred linkers are those where n has a value of 3 to 8.
- the binding molecule comprises CDR sets from clones 20391 and 18439 and particularly where the molecule is bsVHH-Fc71 n has a value of 7.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprises:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 1983/1984/1985 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen-binding sites;
- an antigen-binding -site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 739/740/741 as the CDR1, CDR2, and CRD3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- a linker preferably of sequence (G4S)n wherein n is 2 to 10, more preferably 3 to 8; and
- a Fc region preferably which is a Durvalumab constant region, preferably lack the CHI region, wherein the two polypeptides associate via the Fc regions to form the binding molecule.
- the binding molecule is, or comprises two polyeptides each comprising the CDR sets present in bsVHH-Fc-71. Variants of those CDRs may also be employed as may antigen-binding sites that can compete with those of bsVHH-Fc-71 for binding to gp130 and IL- 12R ⁇ 2.
- each polypeptide comprises humanised versions of the 18439 and 20407 VHH regions.
- An example of a particularly preferred binding molecule is one comprising two polypeptides, wherein each polypeptide comprises: a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 1983, 1984, and 1985 respectively; a linker; a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 739, 740 and 741 respectively, and a Fc region derived from the Durvalumab constant region lacking the CHI region.
- Especially preferred binding molecules are those comprising CDR sets based on the 20407 VHH clone specific for IL-12R ⁇ 2. Further, especially preferred binding molecules are those comprising CDR sets based on the 18416 VHH clone specific for IL-12R ⁇ 2. Further, especially preferred binding molecules are based on those comprising CDR sets from both. Variants and binding molecules able to compete with antigen-binding sites comprising those CDRs are also preferred.
- a binding molecule comprises an antigen-binding site specific for IL-12R ⁇ 2, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively, or variants thereof.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for IL- 12R ⁇ 2, wherein the binding site comprises a VHH of clone 20407.
- a binding site specific for IL-12R ⁇ 2 is a humanised version of the VHH clone 20407.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2217/2218/2219 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 18416.
- a binding site specific for gp130 is a humanised version of the VHH clone 18416.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- At least one antigen-binding-site specific for the gp130 subunit of the IL-35 receptor comprises a set of three CDRs which are those of SEQ ID Nos: 2217/2218/2219 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each;
- the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each.
- the binding molecule comprises a polypeptide comprising at least one antigen-binding-site specific for the gp130 subunit as defined in (i) and at least one antigen- binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the polypeptide further comprises an Fc region, such as an Fc region as defined herein.
- the binding molecule comprises two such polypeptides.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, which each polypeptide comprising:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2217/2218/2219 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- (i) to (iii) are present in that order going from N to C terminus of the polypeptide.
- the binding site of (i) and the binding site of (ii) are joined to each other in the polypeptide sequence via a linker.
- Any suitable linker may be employed, such as any set out herein.
- the linker is a GS linker.
- Examples of linkers include those of (G4S)n, wherein n is a value of 1 to 10.
- Preferred linkers include those where n has a value of 2 to 8.
- Particularly preferred linkers are those where n has a value of 3 to 8.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprises:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2217/2218/2219 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- one antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- F c region preferably which is a Durvalumab constant region, preferably lacking the CHI region, wherein the two polypeptides associate via the Fc regions to form the binding molecule.
- the binding molecule is, or comprises two polyeptides each comprising the CDR sets present in bsVHH-Fc-77. Variants of those CDRs may also be employed as may antigen-binding sites that can compete with those of bsVHH-Fc-77 for binding to gp130 and IL- 12R ⁇ 2.
- each polypeptide comprises humanised versions of the 18416 and 20407 VHH regions.
- An example of a particularly preferred binding molecule is one comprising two polypeptides, wherein each polypeptide comprises: a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 2217, 2218, and 2219 respectively; a linker; a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 652, 653 and 654 respectively, and a Fc region derived from the Durvalumab constant region lacking the CHI region.
- Illustrative preferred binding molecules based on the 20407 and 18420 clones
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2011/2012/2013 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 18420
- a binding site specific for gp130 is a humanised version of the VHH clone 18420.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- At least one antigen-binding-site specific for the gp130 subunit of the IL-35 receptor comprises a set of three CDRs which are those of SEQ ID Nos: 2011/2012/2013 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each;
- the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each.
- the binding molecule comprises a polypeptide comprising at least one antigen-binding-site specific for the gp130 subunit as defined in (i) and at least one antigen- binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the binding molecule comprises a polypeptide comprising one antigen-binding-site specific for the gp130 subunit as defined in (i) and one antigen-binding -site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the polypeptide further comprises an Lc region, such as an Lc region as defined herein.
- the binding molecule comprises two such polypeptides.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, which each polypeptide comprising:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2011/2012/2013 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- (i) to (iii) are present in that order going from N to C terminus of the polypeptide.
- the binding site of (i) and the binding site of (ii) are joined to each other in the polypeptide sequence via a linker.
- Any suitable linker may be employed, such as any set out herein.
- the linker is a GS linker.
- Examples of linkers include those of (G4S)n, wherein n is a value of 1 to 10.
- Preferred linkers include those where n has a value of 2 to 8.
- Particularly preferred linkers are those where n has a value of 3 to 8.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprises:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2011/2012/2013 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- one antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- a Fc region preferably which is a Durvalumab constant region, preferably lack the CHI region, wherein the two polypeptides associate via the Fc regions to form the binding molecule.
- the binding molecule is, or comprises two polyeptides each comprising the CDR sets present in bsVHH-Fc-78 Variants of those CDRs may also be employed as may antigen-binding sites that can compete with those of bsVHH-Fc-78 for binding to gp130 and IL- 12R ⁇ 2.
- each polypeptide comprises humanised versions of the 18416 and 20407 VHH regions.
- An example of a particularly preferred binding molecule is one comprising two polypeptides, wherein each polypeptide comprises: a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 2011, 2012, and 2013 respectively; a linker; a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 652, 653 and 654 respectively, and a Fc region derived from the Durvalumab constant region lacking the CHI region. Variant CDRs may also be employed.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2746/2747/2748 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 19519.
- a binding site specific for gp130 is a humanised version of the VHH clone 19519.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- At least one antigen-binding-site specific for the gp130 subunit of the IL-35 receptor comprises a set of three CDRs which are those of SEQ ID Nos: 2746/2747/2748 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each;
- the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each.
- the binding molecule comprises a polypeptide comprising at least one antigen-binding-site specific for the gp130 subunit as defined in (i) and at least one antigen- binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the binding molecule comprises a polypeptide comprising one antigen-binding-site specific for the gp130 subunit as defined in (i) and one antigen-binding -site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the polypeptide further comprises an Fc region, such as an Fc region as defined herein.
- the binding molecule comprises two such polypeptides.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, which each polypeptide comprising:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2746/2747/2748 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- (i) to (iii) are present in that order going from N to C terminus of the polypeptide.
- the binding site of (i) and the binding site of (ii) are joined to each other in the polypeptide sequence via a linker.
- Any suitable linker may be employed, such as any set out herein.
- the linker is a GS linker.
- Examples of linkers include those of (G4S)n, wherein n is a value of 1 to 10.
- Preferred linkers include those where n has a value of 2 to 8.
- Particularly preferred linkers are those where n has a value of 3 to 8
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprises:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2746/2747/2748 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- one antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 652/653/654 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- a Fc region preferably which is a Durvalumab constant region, preferably lack the CHI region, wherein the two polypeptides associate via the Fc regions to form the binding molecule.
- the binding molecule is, or comprises two polyeptides each comprising the CDR sets present in bsVHH-Fc-84 Variants of those CDRs may also be employed as may antigen-binding sites that can compete with those of bsVHH-Fc-84 for binding to gp130 and IL- 12R ⁇ 2.
- each polypeptide comprises humanised versions of the 19519 and 20407 VHH regions.
- An example of a particularly preferred binding molecule is one comprising two polypeptides, wherein each polypeptide comprises: a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 2746, 2747, and 2748 respectively; a linker; a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 652, 653 and 654 respectively, and a Fc region derived from the Durvalumab constant region lacking the CHI region.
- a binding molecule comprises an antigen-binding site specific for IL-12R ⁇ 2, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 412/413/414 as the CDR1, CDR2, and CDR3 respectively, or variants therefof.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for IL- 12R ⁇ 2, wherein the binding site comprises a VHH of clone 20432.
- a binding site specific for IL-12R ⁇ 2 is a humanised version of the VHH clone 18400.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2130/2131/2132 as the CDR1, CDR2, and CDR3 respectively.
- each variant CDR has at most three amino acid sequence changes compared to those specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- the variant CDRs each have at most two amino acid sequence changes compared to the specific sequences.
- a binding molecule comprises an antigen-binding site specific for gp130, wherein the binding site comprises a VHH of clone 18400.
- a binding site specific for gp 130 is a humanised version of the VHH clone 20391.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- At least one antigen-binding-site specific for the gp130 subunit of the IL-35 receptor comprises a set of three CDRs which are those of SEQ ID Nos: 2130/2131/2132 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each;
- the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 412/413/414 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each.
- the binding molecule comprises a polypeptide comprising at least one antigen-binding-site specific for the gp130 subunit as defined in (i) and at least one antigen- binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the binding molecule comprises a polypeptide comprising one antigen-binding-site specific for the gp130 subunit as defined in (i) and one antigen-binding -site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor as defined in (ii).
- the polypeptide further comprises an Fc region, such as an Fc region as defined herein.
- the binding molecule comprises two such polypeptides.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, which each polypeptide comprising:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2130/2131/2132 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor, wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 412/413/414 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- (i) to (iii) are present in that order going from N to C terminus of the polypeptide.
- the binding site of (i) and the binding site of (ii) are joined to each other in the polypeptide sequence via a linker.
- Any suitable linker may be employed, such as any set out herein.
- the linker is a GS linker.
- Examples of linkers include those of (G4S)n, wherein n is a value of 1 to 10.
- Preferred linkers include those where n has a value of 2 to 8.
- Particularly preferred linkers are those where n has a value of 4 to 8. In one more preferred embodiment, n has a value of 7.
- the present invention provides a binding molecule specific for the IL-35 receptor, wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising two polypeptides, where each polypeptide comprises:
- a VHH comprising an antigen-binding-site specific for the gp130 subunit of the IL-35 receptor, wherein the at least one antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 2130/2131/2132 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- one antigen-binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor wherein the antigen-binding site comprises a set of three CDRs which are those of SEQ ID Nos: 412/413/414 as the CDR1, CDR2, and CDR3 respectively or variant versions thereof with at most three amino acid sequence changes each or an antigen-binding site which is able to compete for binding with one of the preceding antigen binding sites;
- a F c region preferably which is a Durvalumab constant region, preferably lack the CHI region, wherein the two polypeptides associate via the Fc regions to form the binding molecule.
- the binding molecule is, or comprises two polyeptides each comprising the CDR sets present in bsVHH-Fc-96 Variants of those CDRs may also be employed as may antigen-binding sites that can compete with those of bsVHH-Fc-96 for binding to gp130 and IL- 12R ⁇ 2.
- each polypeptide comprises humanised versions of the 18400 and 20432 VHH regions.
- An example of a particularly preferred binding molecule is one comprising two polypeptides, wherein each polypeptide comprises: a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 2130, 2131, and 2132 respectively; a linker; a VHH comprising a CDR1, CDR2, and CDR3 of SEQ ID Nos 412, 413 and 414 respectively, and a Fc region derived from the Durvalumab constant region lacking the CHI region. Variant CDRs may also be employed. Biparatopics
- a binding molecule of the invention is biparatopic for gp130 that comprises two different antigen binding sites specific for gp130, wherein each binding site binds a different epitope of g 130.
- a binding molecule of the invention is biparatopic for IL-12R ⁇ 2 that comprises two different antigen binding sites specific for IL-12R ⁇ 2, wherein each binding site binds a different epitope of IL-12R ⁇ 2.
- a binding molecule is biparatopic for gp130 and biparatopic for IL-12R ⁇ 2.
- the binding molecule comprises two polypeptides with two antigen-binding sites on each polypeptide.
- each polypeptide has one binding site for gp130 and one binding site for IL-12R ⁇ 2.
- the binding molecule comprises:
- a first polypeptide comprising a first binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2755, 2756, and 2757 respectively and a first binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 412, 413, and 414 respectively or alternatively the first binding site for gp130 and/or first binding site for IL-12R ⁇ 2 comprise a variant set of three CDRs with a maximum of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen; and
- the second polypeptide comprising a second binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2692, 2693, and 2694 respectively and a second binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 412, 413, and 414 respectively or alternatively the second binding site for gp130 and/or second binding site for IL-12R ⁇ 2 comprise a variant set of three CDRs with a maxium of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen.
- the binding molecule comprises:
- a first polypeptide comprises a first binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 1983, 1984, and 1985 respectively and a first binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 739, 740, and 741 respectively or alternatively the first binding site for gp130 and/or first binding site for IL-12R ⁇ 2 comprise a variant set of three CDRs with a maxium of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen; and
- the second polypeptide comprises a second binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2217, 2218, and 2219 respectively and a second binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 652, 653, and 654 respectively or alternatively the second binding site for gp130 and/or second binding site for IL- 12R ⁇ 2 comprise a variant set of three CDRs with a maxium of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen.
- the binding molecule in only biparatopic for one of gp130 and IL-12R ⁇ 2, with the binding molecule being monoparatopic for the other.
- a binding molecule comprises:
- a first polypeptide comprises a first binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2130, 2131, and 2132 respectively and a first binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2755, 2756, and 2757 respectively or alternatively the binding site for gp130 and/or first binding site for IL-12R ⁇ 2 comprise a variant set of three CDRs with a maxium of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen; and
- the second polypeptide comprises a first binding site for gp130 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 2130, 2131, and 2132 respectively and a second binding site for IL-12R ⁇ 2 comprising a CDR1, CDR2 and CDR3 set of SEQ ID Nos: 412, 413, and 414 respectively or alternatively the second binding site for gp130 and/or second binding site for IL-12R ⁇ 2 comprise a variant set of three CDRs with a maxium of three amino acid sequence changes per CDR, with the binding site still able to bind the antigen.
- the polypeptides comprise an Fc region, such as any discussed herein.
- the Fc region of the polypeptides comprises sequences that favour heterodimer formation over homodimer formation.
- a preferred modification is the knobs-in-holes.
- a particularly preferred Fc region is based on Durvalumab. In one preferred embodiment, the Fc region is the Durvalumab region minus the CHI region and with knobs- in-holes modification.
- biparatopic molecules examples include those of KiH-71/77 and KiH-107/108. As well as variant versions.
- the binding molecule corresponds to KiH- 71/77 except that the VHH domains have been humanised and in particular the framework regions have been humanised.
- the binding molecule corresponds to KiH- 71/77 except that the VHH domains have been humanised and in particular the framework regions have been humanised.
- a binding molecule comprises the same CDR sets and same number of binding sites in the same format as shown in those Figures, but where the VHH domains have been humanised.
- Figure 11 shows examples of particularly preferred binding molecules in conjunction with a durvulumab constant region which are is a particular preferred embodiment.
- VHH binding domains As well as the specific binding molecules, VHH binding domains, CDR sets, and other sequences set out herein variant forms of those may be also employed in the present invention. Variants may be defined, for example, in terms of having a particular level of sequence identity or number of sequence changes in comparison to a specific VHH domain or set of CDR sequences from Table 1 or 2B.
- the sequence identity may be over the entire length of a sequence, such as over the entire length of a VHH domain or just over the length of the set of CDR sequences.
- a variant may have such a level of sequence identity or modification and retain the function of the specific sequence. Hence, for instance, a variant IL-12R ⁇ 2 binding site will typically retain the ability to bind IL-12R ⁇ 2.
- a variant gp130 binding site will typically retain the ability to bind gp130.
- a variant binding molecule will retain the ability to bind to IL-12R ⁇ 2 and gp130.
- the variant will also retain the ability to act as an agonist of IL-35R.
- a variant binding molecule will retain the ability to activate STAT3, for instance when measured using an assay as described in the Examples of the present application. It may retain the ability to stimulate IL- 10 production, for instance as measured in the Examples of the present application.
- activation may be measured by measuring phosphorylation of STATE
- activation of STAT4 will be measured.
- activation as measured by phosphorylation of STAT3 protein will be measured and a variant will retain the ability to bring about such activation.
- Sequence identity can be defined in terms of over the entire length of the polypeptide in question or over the regions discussed above, such as over the CDR set or VHH domain. Degrees of identity and similarity can be readily calculated (Computational Molecular Biology, Lesk, A.M., ed., Oxford University Press, New York, 1988; Biocomputing. Informatics and Genome Projects, Smith, D.W., ed., Academic Press, New York, 1993; Computer Analysis of Sequence Data, Part 1, Griffin, A.M., and Griffin, H.G., eds., Humana Press, New Jersey, 1994; Sequence Analysis in Molecular Biology, von Heinje, G., Academic Press, 1987, Sequence Analysis Primer, Gribskov, M.
- Similarity indicates that, at any particular position in the aligned sequences, the amino acid residue is of a similar type between the sequences.
- leucine may be substituted for isoleucine or valine.
- Other amino acids which can often be substituted for one another include but are not limited to:
- a variant VHH binding domain may have at least 80% amino acid identity, for example 85% or greater, such as 90% or greater, in particular 95%, 96%, 97%, 98% or 99% or greater identity to one of the specific VHH binding domains set out in Table 1 or 2B.
- a sequence may have at least 95% sequence identity to at least one of those sequences.
- a variant VHH binding domain may have such percentages values in relation to the degree of amino acid sequence similarity that they display to the specific sequence.
- the variant will be still able to bind the relevant IL35R subunit, i.e. IL-12R ⁇ 2 or gp130.
- the overall binding molecule will still be able to act as an agonist of the receptor.
- such levels of sequence identity are over the overall length of the specific CDR set.
- a binding molecule of the invention may comprise a variant set of CDRs which are a variant of one of the specific CDR sets of Table 1 or 2B.
- only one of the three CDRs shows sequence variation in comparison to the corresponding CDR of the set of three CDRs.
- two of the CDRs show sequence variation in comparison to the specific set of three CDRs.
- all three CDRs may show sequence variation compared to the specific CDRs of the set.
- the sequence variation is only in the CDR3 of the CDR set.
- the level of sequence identity over the total length of the three CDRs in comparison to the set of three specific CDR sequences from Table 1 or 2B is at least 80%.
- the level of identity is at least 90%. In a preferred embodiment, the level of sequence identity is at least 95%.
- the variant will still be able to bind the relevant IL-35R subunit, i.e. IL-12R ⁇ 2 or gp130. Typically, the overall binding molecule will be still able to act as an agonist of the receptor.
- a variant may have a set of three CDRs comprising from one to twenty, such as from one to ten, for example as one, two, three, four, five or up to those values of amino acid sequence changes or at least those values, or up to those values compared to the set of CDRs from Table 1 or 2B, so long as the variant is still able to bind the relevant IL-35R subunit, i.e. IL-12R ⁇ 2 or gp130. Typically, the overall binding molecule will still be able to act as an agonist of the receptor.
- a variant of the present invention may have at least five, six, seven, eight, nine, ten, eleven or twelve amino acid sequence changes compared to the CDRs of one of the specific antibodies set out herein, for example it may have that number of sequence changes in a set of CDRs making up a VHH domain.
- a binding molecule of the present invention may have that number of sequence changes in a set of three CDRs compared to the sequence of the set of CDRs identified in Table 1 or 2B.
- a set of three CDRs may have from five to ten, ten to fifteen, or fifteen to twenty amino acid sequence changes compared to a specific set of three CDRs set out herein.
- Variant binding molecules will typically retain the ability to specifically bind IL-12R ⁇ 2 or gp130. They may also retain one of the other functions set out herein. The overall binding molecule will be typically still able to act as an agonist of the IL-35R.
- the binding molecules are mutated to provide improved affinity for the relevant IL-35R subunit.
- affinity maturation protocols including mutating the CDRs (Yang et al., J. Mol. Biol., 254, 392-403, 1995), chain shuffling (Marks et al., Bio/Technology, 10, 779-783, 1992), use of mutator strains of E. colt (Low et al J. Mol. Biol., 250, 359-368, 1996), DNA shuffling (Patten et al Curr. Opin. Biotechnol., 8, 724-733, 1997), phage display (Thompson et al., J. Mol.
- Vaughan et al discusses these methods of affinity maturation (Vaughan et al., Nat. Biotech., 16, 535-539, 1998). Where not specifically for VHH domains such approaches may be adapted for them. Improving the affinity of binding of individual binding sites will typically also improve the overall avidity for the target where the binding molecule has more than one binding site.
- the present invention also provides, and may employ, binding molecules which are able to compete with the specific binding molecules set out herein.
- the assays section of the present application sets out various binding and competition assays that may be performed and such assays may be used to confirm a given binding molecule is one able to compete with one of the specific binding molecules set out herein.
- the present invention also provides a binding molecule that is able to compete for binding with one of the VHH binding domains of Table 1 or 2B.
- the present invention also provides a binding molecule that is able to compete for binding to IL-12R ⁇ 2 or gp130 with a binding molecule having a VHH binding-domain comprising a set of three CDRs from Table 1 or 2B.
- variant antibodies may be identified by identifying such antibodies that are able to cross-block specific antibodies set out herein.
- Cross-blocking binding molecules in particular antibodies, can be identified using any suitable method in the art, for example by using competition ELISA or BIAcore assays where binding of the cross-blocking antibody to antigen prevents the binding of an antibody of the present invention or vice versa.
- Such cross-blocking assays may use cells expressing IL-12R ⁇ 2 and/or gp130 as a target and preferably both.
- flow cytometry is used to assess binding to cells expressing them.
- a binding site is defined by competition to a binding site with a specific sequence, it may be that the assay for competition is performed with just the individual VHH binding domains for that specificity rather than the overall binding molecule.
- Antigen polypeptides for use in generating antibodies for example for use to immunize a host or for use in panning, such as in phage display, may be prepared by processes well known in the art from genetically engineered host cells comprising expression systems or they may be recovered from natural biological sources.
- the host may be immunised with a cell expressing an IL-12R ⁇ 2.
- a VHH domain of the present invention is obtained by immunising a camelid and in particular a llama.
- gp130 may be used as the immunogen.
- VHH binding domains specific for IL-12R ⁇ 2 and gpI30 may be generated and assessed individually and then assembled into a binding molecule for both specificities, which can in turn be assessed.
- the antigen-binding sites, and in particular the VHH regions, of the antibodies according to the invention are humanised.
- Humanised which include CDR-grafted antibodies
- CDRs complementarity determining regions
- framework region from a human immunoglobulin molecule
- Humanised antibodies may optionally further comprise one or more framework residues derived from the non-human species from which the CDRs were derived.
- the term “humanised antibody molecule” refers to an antibody molecule wherein one or more CDRs (including, if desired, one or more modified CDRs) from a donor antibody (e.g., a murine monoclonal antibody) are grafted into a framework of an acceptor antibody (e.g., a human antibody).
- a donor antibody e.g., a murine monoclonal antibody
- acceptor antibody e.g., a human antibody.
- the whole binding molecule may be humanised, so the CDRs are introduced into a molecule which is otherwise human.
- any appropriate acceptor variable region framework sequence may be used having regard to the class/type of the donor antibody from which the CDRs are derived, including mouse, primate, and human framework regions.
- the humanised antibody according to the present invention has a variable domain comprising human acceptor framework regions as well as one or more of the CDRs provided herein.
- human frameworks which can be used in the present invention are KOL, NEWM, REI, EU, TUR, TEI, LAY and POM.
- KOL and NEWM can be used for the heavy chain
- REI can be used for the light chain and EU
- LAY and POM can be used for both the heavy chain and the light chain.
- human germline sequences may be used; these are available at:
- the acceptor framework does not necessarily need to be derived from the same antibody and may, if desired, comprise composite chains having framework regions derived from different chains.
- the framework regions need not have exactly the same sequence as those of the acceptor antibody. For instance, unusual residues may be changed to more frequently occurring residues for that acceptor chain class or type. Alternatively, selected residues in the acceptor framework regions may be changed so that they correspond to the residue found at the same position in the donor antibody (see Reichmann et al 1998, Nature, 332, 323-324). Such changes should be kept to the minimum necessary to recover the affinity of the donor antibody.
- a protocol for selecting residues in the acceptor framework regions which may need to be changed is set forth in WO 91/09967.
- Derivatives of frameworks may have 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more amino acids replaced with an alternative amino acid, for example with a donor residue.
- Donor residues are residues from the donor antibody, i.e., the antibody from which the CDRs were originally derived, in particular the residue in a corresponding location from the donor sequence is adopted.
- Donor residues may be replaced by a suitable residue derived from a human receptor framework (acceptor residues).
- the Kabat et al numbering system is referred to herein. This system is set forth in Kabat et al., 1987, in Sequences of Proteins of Immunological Interest, US Department of Health and Human Services, NIH, USA (hereafter “Kabat et al. (supra)”). This numbering system is used in the present specification except where otherwise indicated.
- the Kabat residue designations do not always correspond directly with the linear numbering of the amino acid residues.
- the actual linear amino acid sequence may contain fewer or additional amino acids than in the strict Kabat numbering corresponding to a shortening of, or insertion into, a structural component, whether framework or complementarity determining region (CDR), of the basic variable domain structure.
- the correct Kabat numbering of residues may be determined for a given antibody by alignment of residues of homology in the sequence of the antibody with a “standard Kabat numbered sequence.
- the CDRs of the heavy chain variable domain are typically located at residues 31-35 (CDR-H1), residues 50-65 (CDR-H2) and residues 95-102 (CDR-H3) according to the Kabat numbering system.
- CDR-H1 residues 31-35
- CDR-H2 residues 50-65
- CDR-H3 residues 95-102
- CDR-H1 as employed herein is intended to refer to residues 26 to 35, as described by a combination of the Kabat numbering system and Chothia’s topological loop definition.
- the CDRs of the light chain variable domain are typically located at residues 24-34 (CDR-U1), residues 50-56 (CDR-U2) and residues 89-97 (CDR- U3) according to the Kabat numbering system.
- binding molecules that bind the same epitope on IL-12R ⁇ 2 or gp130 as one of the specific antibodies set out herein.
- the binding molecule may be an antibody that binds to the same epitope.
- a further preferred embodiment is the change of the first amino acid of the IL-12R ⁇ 2 VHH sequence from glutamine (Q) to glutamic acid (E).
- This AA change is present in bsVHH-Fc 55 to the last bsVHH-Fc (including the biparatopic bsVHH-Fc). It may though also be introduced into any of bsVHH-Fc 1 to 54 as well, as well as in the IL-12R ⁇ 2 VHH domains set out herein. Constant regions
- a binding molecule of the present invention will comprise a constant region.
- the constant region will have been modified so that the effector functions of the Fc region have been reduced or eliminated.
- binding to both or either will not result in antibody effector functions such as ADCC, ADCP, or CDC.
- the binding molecule will be preferably able to act as an agonist of IL- 35, but not kill the target cell.
- a binding molecule of the present invention does not bind Fc receptors and in particular does not bind to FcyR receptors.
- the binding molecule of the present invention is an antibody and it does not bind to Fc receptors, either because it does not comprise an Fc region or alternatively as it is has an Fc region modified so that it does not bind Fc receptors.
- Fc domain as employed herein generally refers to -(CFLCFL ⁇ , unless the context clearly indicates otherwise, where CH2 is the heavy chain CH2 domain, CH3 is the heavy chain CH3 domain, and there are two CH2CH3 with one from each heavy chain.
- an antibody of the present invention does not comprise a -CH2CH3 fragment.
- an antibody of the present invention does not comprise a CH2 domain.
- an antibody of the present invention does not comprise a CH3 domain.
- a binding molecule of the present invention binds to an Fc gamma receptor but to a substantially decreased extent relative to binding of an identical antibody comprising an unmodified Fc region to the FcgR (e.g., a decrease in binding to a FcyR by at least 70%, at least 80%, at least 90%, at least 95%, at least 98%, at least 99%, or 100% relative to binding of the identical antibody comprising an unmodified Fc region to the FcyR as measured).
- the binding molecule has no detectable binding to an FcyR at all.
- Binding can be determined using a variety of techniques known in the art, for example but not limited to, equilibrium methods (e.g., enzyme-linked immunoabsorbent assay (ELISA); KinExA, Rathanaswami et al. Analytical Biochemistry, Vol. 373:52-60, 2008; or radioimmunoassay (RIA)), or by a surface plasmon resonance assay or other mechanism of kinetics-based assay (e.g., BIACORETM analysis or OctetTM analysis (forteBIO)), and other methods such as indirect binding assays, competitive binding assays fluorescence resonance energy transfer (FRET), gel electrophoresis and chromatography (e.g. gel filtration).
- equilibrium methods e.g., enzyme-linked immunoabsorbent assay (ELISA); KinExA, Rathanaswami et al. Analytical Biochemistry, Vol. 373:52-60, 2008; or radioimmunoassay (RIA)
- an Fc region employed is mutated, in particular comprising a mutation described herein.
- the mutation is to remove binding to Fc receptors and in particular FcyR.
- an antibody may comprise an aglycosylated Fc region, for example to bring about reduced Fc function and in particular a nearly Fc-null phenotype.
- an antibody has a modification at N297 and in particular N297A.
- an antibody has modifications at F243 and/or F244 of the constant region, in particular ones that mean that the antibody comprises a glycosylated constant region.
- an antibody may comprise the F243A and/or F244A heavy chain modifications.
- F241, F243, V262 and V264 may be modified and particularly to amino acids that influence glycosylation.
- an antibody may have modifications at F241A, F243A, and/or V262E. In one embodiment, it may have the modification V264E. Yu et al (2013) Journal of American Chemical society, 135(26): 9723-9732, which is incorporated by reference in its entirety, particularly in relation to the modifications discussed therein.
- an antibody of the present invention may comprise the LALA modification, Leu234Ala/Leu235Ala.
- an antibody of the present invention may comprise the LFLEPS modification, Leu234Phe/Leu235Glu/Pro331/Ser.
- a binding molecule, in particular an antibody, of the present invention may be produced in a cell type that influences glycosylation as a further approach for sugar engineering.
- the fucosylation, sialylation, galactosylation, and/or mannosylation may be altered either by sequence modifications and/or via the type of cell used to produce the binding molecule, and in particular antibody.
- an antibody has modifications at position 297 and/or 299.
- an antibody of the present invention comprises a N297A modification in its heavy chains, preferably N297Q or mutation of Ser or Thr at 299 to other residues.
- a binding molecule of the present invention comprises two different heavy chains where the heavy chains comprise modifications that allow the different heavy chains to preferentially associate compared to heavy chains associating with identical heavy chains.
- the antibody different antigen-binding sites on each of the polypeptides comprising the binding molecule for instance where one polypeptide comprises at least one antigen-binding site specific for IL-12R ⁇ 2 and the other polypeptide comprises at least one antigen binding site specific for gp130, wherein each polypeptide does not comprise an antigen binding site for the other specificity.
- the two different heavy chains comprise knob-in -hole mutations.
- the knob-into-hole mutations are a T366W mutation in one heavy chain constant region and a T366S, L368A, and a Y407V mutation in the other domain.
- the knob-into-hole mutations employed are E357K/E399K and/or K392D/K409D.
- the knob-into-hole modifications employed are E357K/E399K and K392D/K409D.
- the knob-in hole mutations are a T366W mutation in one heavy chain constant region and a T366S, L368A, and a Y407V mutation in the other domain.
- the modifications comprise charge-pair mutations.
- the charge-pair mutations are a T366K mutation in one of the heavy chain constant regions and a corresponding L35 ID mutation in the other domain.
- the heavy chains comprise modifications that mean a heterodimer comprising the two heavy chains can be purified preferentially from the homodimers only comprising one type of heavy chain.
- the modifications may alter affinity for Protein A, with one heavy chain still able to bind Protein A, whilst the modified heavy chain does not do so, meaning that heterodimers of the two different heavy chains can be purified based on their affinity for Protein A.
- heavy and light chains may comprise modifications that change whether or not a disulphide bridge is formed between them.
- the modifications comprise mutations that generate engineered disulfide bridges between light and heavy chains.
- engineered disulfide bridges are mutations that provide non- endogenous cysteine amino acids in two or more polypeptides such that a non-native disulfide bond forms when the two or more domains associate. Engineered disulfide bridges are described in greater detail in Merchant et al. (1998) Nature Biotech., 16:677-681, the entirety of which is hereby incorporated by reference.
- the mutations that generate engineered disulfide bridges are a K392C mutation in one of a first or second CH3 domains, and a D399C in the other CH3 domain.
- the mutations that generate engineered disulfide bridges are a S354C mutation in one of a first or second CH3 domains, and a Y349C in the other CH3 domain.
- the mutations that generate engineered disulfide bridges are a 447C mutation in both the first and second CH3 domains that are provided by extension of the C-terminus of a CH3 domain incorporating a KSC tripeptide sequence.
- a binding molecule, and in particular an antibody, of the present invention has Fc region modification(s) that alter the half-life
- binding molecules, and in particular antibodies, of the present invention may comprise modifications that alter serum half-life. Such modifications may be present as well as those that alter Fc functions.
- a binding molecule, and in particular an antibody, of the present invention has modification(s) that alter its serum half-life compared to in the absence of such modifications. In one embodiment, the modifications result in increased serum half-life. In another embodiment, they result in decreased serum half-life.
- an antibody comprises one or more modifications that collectively both silence the Fc region and decrease the serum half-life of the antibody compared to an antibody lacking such modifications.
- LALA-PG, and cFAE modifications are particularly preferred, for instance in one embodiment the constant regions will include all of those modifications. In one preferred embodiment, the LALA modifications are present.
- the antibody has a constant region with minor to no effector functions, such as an antibody derived from the FDA-approved antibody Durvalumab with Fc modifications L234F/L235E/P331S.
- the Fc modifications in Durvalumab help eliminate Fc functions and so the use of the light and heavy chain constant regions or Durvalumab is a particularly effective way to provide a constant region with the desired lack of Fc functions.
- the binding molecule comprises the Fc region of Durvalumab.
- the binding molecule comprises constant region sequences derived from Durvalumab
- they may comprise any of the constant region modifications discussed herein.
- Durvalumab has a human IgGl backbone.
- the binding molecule may comprise a human IgG region.
- it may comprise a human IgGl region.
- Such regions may be modified to eliminate Fc function.
- the constant regions may be modified to delete the CHI region, particularly where the antigen-binding domains are sdBrs.
- the heavy and light chain constant region sequences of Durvalumab are provided respectively as SEQ ID NOs 838 and 839.
- a binding molecule of the present invention comprises such light and heavy chain variable sequences or a variant of such a sequence.
- the variant sequence or sequences have at least 90% sequence identity to the relevant specific sequence.
- the variant has at least 95% sequence identity.
- a binding molecule of the present invention comprises the heavy and light chain constant region sequences of SEQ ID Nos: 838 and 839, but with one or more of the constant region sequence modifications discussed herein.
- such heavy and light chain constant regions are employed in binding molecules provided herein.
- a variant of the heavy chain constant region of Durvalumab sequence with the CHI region deleted is provided as SEQ ID NO: 210.
- such a constant region is employed where the binding molecule comprises sdAb based antigen binding sites, preferably with VHH antigen-binding sites.
- a binding molecule of the present invention may comprise the sequence of SEQ ID NO: 210 or a variant thereof with at least 90% sequence identity.
- the variant may have at least 95% sequence identity.
- a variant in such embodiments will still be CHI deleted.
- Such heavy chain constant regions with a CHI deletion is preferably employed in one embodiment.
- Table A sets out the full Durvalumab heavy and light chain constant region sequences, as well as the heavy region sequence lacking the CHI region.
- Binding molecules of the present invention may be conjugated to other molecules.
- the binding molecule is conjugated to a label.
- a binding molecule, particularly an antibody, of the invention is not conjugated to an effector molecule.
- a binding molecule, particularly an antibody, of the invention is not conjugated to a toxin.
- a binding molecule, particularly an antibody, of the invention is not conjugated to a radioisotope. In another embodiment, it is not conjugated to an agent for imaging.
- an assay may be employed to determine if a given binding molecule has a particular property or properties, or the level of an activity of interest a binding molecule has. Such assays may detect or measure the activity of interest.
- One or more of the assays described in the Examples of the present application may be employed to assess a particular binding molecule and whether it has a desired property or properties.
- the assays in the Examples may be employed, for instance, to determine the ability of a binding molecule to bind IL-12R ⁇ 2. They may be used to determine the ability to bind to gp130. They may also be used to determine the ability of a given molecule to act as an agonist of an IL-35 receptor.
- Any suitable method for measuring binding may be employ ed, such as those used in the Examples of the present application.
- the ability to bind IL-12R ⁇ 2 or gp130 may be assessed by employing techniques like surface plasmon resonance using IL-12R ⁇ 2, gp 130, or a portion of either thereof, bound to a chip.
- a binding molecule of the present invention will be typically able to bind to IL-12R ⁇ 2 or gp130, when present on the cell surface and preferably both when present on the surface of the cell.
- an antibody, or VHH domain is defined by its ability to compete with another, the ability to compete for binding to just IL-12R ⁇ 2 or gp130 is measured. In one embodiment, the ability of individual VHH binding domains will be measured, rather than looking at competition between molecules comprising both IL-12R ⁇ 2 and gp130 binding domains.
- a binding domain is said to have at least one VHH domain specific for IL-12R ⁇ 2 and at least one VHH binding domain specific for gp130, where both of those binding domains are defined by their ability to compete with one of the specific VHH binding domains of the present invention
- the binding assays to determine the ability to compete will be performed on the individual VHH binding domain for IL-12R ⁇ 2 and the individual binding domain for gp130 separately.
- the preferred assay for measuring competition is flow cytometry.
- the ability of a candidate binding molecule to bind to IL-12R ⁇ 2 is assessed in an assay comprising: (a) contacting a candidate binding molecule with a cell expressing IL-12R ⁇ 2 on its surface; and (b) detecting any binding of the candidate binding molecule to the cells with IL-12R ⁇ 2 on their surface.
- the method is a flow cytometry method.
- the cells express human IL-12R ⁇ 2 on their surface.
- the cells employed are HEK293T cells transiently transfected with a human IL-12R ⁇ 2 expression plasmid.
- the cells used are a stable cell line expressing IL-12R ⁇ 2.
- the cells are a stable HEK293T cell line expressing IL-12R ⁇ 2 on their surface.
- either the candidate binding molecule is itself labelled or is detected using a secondary antibody.
- the ability of a candidate binding molecule to bind to IL-12R ⁇ 2 is assessed in a flow cytometry assay comprising: (a) contacting a candidate binding molecule with a stable HEK293T cell line expressing IL-12R ⁇ 2 on its surface; and (b) detecting by flow cytometry any binding of the candidate binding molecule to the cells, wherein the candidate binding molecule comprises HA, with binding to the cell detected using a mouse anti-HA antibody and an anti -mouse PE antibody.
- Such assays may also be performed for gp130 binding for the VHH domains which are specific for gp130 using cell lines expressing gp130. They may be performed with both IL-35 receptor subunits.
- the present invention also provides a novel assay for detecting, and preferably measuring, the ability of a given molecule to bring about the association of the IL-12R ⁇ 2 and gp130 receptor subunits of the IL-35R.
- the present invention provides a method of detecting the ability of a test molecule to bring about the association of the IL-12R ⁇ 2 and gp130 receptor subunits comprising: (a) contacting a test binding molecule with a cell expressing modified versions of IL- 12R ⁇ 2 and gp130, wherein IL-12R ⁇ 2 and gp130 have been modified to produce a detectable signal when associated; and (b) detecting for the detectable signal, if present, resulting from the association of IL-12R ⁇ 2 and gp130.
- the method may comprise measuring the detectable signal. It may comprise comparing the detectable signal to a control.
- the control may be a positive control known to lead to the association of IL-12R ⁇ 2 and gp130. In another the control may a control known not to lead to association.
- the control may be the assay performed without any test molecule.
- the detectable signal may be any suitable signal resulting from association of the two. In one embodiment, the detectable signal is the activity of an enzyme which only becomes active when IL-12R ⁇ 2 and gp130 associate.
- a preferred assay for measuring the ability of a binding molecule to bring about gp130 and IL-12R ⁇ 2 dimerization is a NanoLuc Binary Technology assay (NanoBiT), for instance that employed in Example 2.
- the invention provides a method for determining whether a test molecule brings about the association of the IL-12R ⁇ 2 and gp130 receptor subunits comprising: (a) contacting a test binding molecule with a cell expressing modified versions of IL-12R ⁇ 2 and gp130 where IL- 12R ⁇ 2 and gp130 have been modified so that when the two associate an enzyme becomes activated; and (b) measuring for the activity of the enzyme.
- the method comprises: (a) contacting a test binding molecule with a cell expressing modified versions of IL-12R ⁇ 2 and gp130, where when the two associate luciferase becomes activated; and (b) measuring for the activity of the enzyme.
- a luciferase-based gp130-IL-12R ⁇ 2 assay is employed where gp130 is fused to one of Large BiT (LgBiT; 17.6kDa) and Small BiT (SmBiT; 11 amino acids) and IL-12R ⁇ 2 to the other, IL-12R ⁇ 2 and gp130 dimerising triggers luciferase activity in the form of the Nanoluc enzyme.
- Large BiT Large BiT
- SmBiT Small BiT
- IL-12R ⁇ 2 and gp130 dimerising triggers luciferase activity in the form of the Nanoluc enzyme.
- the present invention further provides a method for determining whether a test molecule brings about the association of the IL-12R ⁇ 2 and gp130 receptor subunits comprising: (a) contacting a test binding molecule with a cell expressing modified versions of IL-12R ⁇ 2 and gp130 where gp130 is fused to one of Large BiT (LgBiT; 17.6kDa) and Small BiT (SmBiT; 11 amino acids) and IL-12R ⁇ 2 to the other, so that IL-12R ⁇ 2 and gp130 dimerising triggers luciferase activity in the form of the Nanoluc enzyme; and (b) measuring for luciferase activity, if present.
- Large BiT Large BiT
- SmBiT Small BiT
- a binding molecule will be assessed for its ability to dimerise gp130 and IL-12R ⁇ 2 receptor chains with the assay using either transiently transfected cells or cell lines stably transfected to express both the IL-12R ⁇ 2 and gp130 by contacting the cells with the candidate binding molecule and measuring luciferase activity.
- Competition assays may be used to determine whether a candidate binding molecule or individual VHH binding domain is able to compete for binding to IL-12R ⁇ 2 with another binding molecule.
- a variant binding molecule has the ability to compete for binding to IL- 12R ⁇ 2 with one of the specific binding molecules of the present invention.
- an assay to assess competition may comprise: (a) contacting a candidate binding molecule, a labelled binding molecule of the invention, and a cell expressing IL-12R ⁇ 2 on its surface; (b) determining the amount of binding of the labelled binding molecule of the present invention to the cells compared to the amount of binding for the same assay performed without the candidate binding molecule.
- the ability of a candidate binding molecule and a specific binding molecule of the present invention to bind to cells expressing IL-12R ⁇ 2 is measured individually using the same assay and the two results obtained are compared.
- Any of the assays and methods set out herein to measure binding to cells may also be used to measure competition or to compare binding of two binding molecules to IL-12R ⁇ 2.
- the same binding assay may be performed to look for competition for gp130 binding sites.
- Such assays for competition may be performed with individual binding domains. They may also be performed with the overall binding molecule.
- a binding molecule of the present invention does not compete with IL-12 for binding to IL-12R ⁇ 2 or does not significantly do so.
- an assay may be used to determine the ability of a given binding molecule to compete with IL- 12 for binding.
- the assay may comprise: (a) contacting HEK-Blue IL- 12 reporter cells with IL- 12 in the presence and absence of the binding molecule; and (b) measuring secreted embryonic alkaline phosphatase in the cell culture medium to determine if the presence of the binding molecule decreases the amount of secreted embryonic alkaline phosphatase indicating that the binding molecule is competing with IL- 12 for binding to the IL- 12 receptor.
- the assay is performed with different dilutions of the binding molecule to determine the effect of increasing binding molecule concentration on the ability of IL- 12 to bind to its receptor.
- a binding domain for IL-12R ⁇ 2, rather than the whole molecule, is assessed for its ability to compete with IL- 12.
- a binding molecule of the present invention does not compete with IL-6 for binding to gp 130 or does not significantly do so.
- an assay may be used to determine the ability of a given binding molecule to compete with IL-6 for binding to gp 130.
- the assay may comprise: (a) contacting HEK-Blue IL- 12 reporter cells with IL- 12 and IL-6 in the presence and absence of the binding molecule; and (b) measuring for STAT3 phosphorylation in lysates of the cells.
- phospho (Tyr705)-STAT3 is measured in the antibody, for instance using an antibody against the phosphorylated STAT3.
- the assay will be performed with a number of IL-6 family members to check that a given binding molecule does not compete with them.
- such competition assays may be used to determine the ability of a binding molecule, or an individual binding domain, to compete with IL-6. In other embodiments, such assays may be used to assess ability to compete with other IL-6 family members.
- a binding molecule of the present invention will be able to bring about activation of STAT3.
- Illustrative assays for measuring STAT3 activation are set out in the Examples of the present application.
- a anti-phospho(Tyr705)-STAT3 antibody may be employed to measure ability to induce phosphorylation of STAT3.
- the HEK-Blue -IL- 12 SEAP report cell line may be employed, for instance in the assay described in Example 2 of the present application.
- binding molecule in particular of an antibody
- an animal model of any of the conditions mentioned herein may be employed to assess a binding molecule of the present invention.
- Such animal models may be used to assess whether a given binding molecule is able to treat or prevent the condition in question or to reduce the degree of severity of the disease.
- assays may look at the size of an immune response, for example, before during or after treatment.
- the assay may look for inflammatory markers.
- the binding molecules of the invention are preferably used as agonists of the IL-35 receptor. Activation of the IL-35 receptor is generally associated with suppressing immune response. Hence, the binding molecules of the invention may be used to modulate an immune response. Preferably a binding molecule of the invention may be used to suppress or reduce an immune response.
- the present invention provides a method of suppressing or reducing an immune response comprising administering a binding molecule of the present invention to a subject in need thereof.
- the invention also provides a binding molecule of the present invention for use in a method of suppressing or reducing an immune response.
- a binding molecule of the present invention may also be used to induce immune tolerance.
- the disorder to be treated or prevented is an autoimmune disorder.
- the disorder is an inflammatory condition.
- disorders which may be treated or prevented include allergic airway disorders, for example eosinophilia and allergic rhinitis.
- the disorder may be arthritis, preferably rheumatoid arthritis.
- the disorder may be colitis.
- the disorder may be multiple sclerosis.
- the disorder may be multiple sclerosis, diabetes, viral myocarditis, SLE, or atherosclerosis.
- the condition is graft versus host disease (GVHD).
- the disorder to be treated or prevent may be selected from GVHD, multiple sclerosis, chronic obstructive pulmonary disorder (COPD), allergic rhinitis, ulcerative colitis, crohn’s disease, immune thrombocytopenia (ITP), fetomatemal tolerance, Hashimoto’s thyroiditis, atherosclerosis, coronary artery disease, metabolic syndrome and Type 2 Diabetes (T2D).
- COPD chronic obstructive pulmonary disorder
- IPP immune thrombocytopenia
- fetomatemal tolerance Hashimoto’s thyroiditis
- atherosclerosis atherosclerosis
- coronary artery disease CAD
- Type 2 Diabetes Type 2 Diabetes
- the disease to be treated or prevented is selected from allergic airway (eosinophilia, allergic rhinitis), rheumatoid arthritis (RA), colitis, multiple sclerosis (MS), diabetes, Graft Versus Host Disease (GVHD), viral myocarditis, Systemic Lupus Erythematosus (SLE), primary Sjogren syndrome, psoriasis, dermatomyositis, systemic sclerosis, heart disease, atherosclerosis, and atherosclerotic heart disease.
- allergic airway eosinophilia, allergic rhinitis
- RA rheumatoid arthritis
- MS multiple sclerosis
- GVHD Graft Versus Host Disease
- viral myocarditis e.g., Systemic Lupus Erythematosus (SLE), primary Sjogren syndrome
- psoriasis psoriasis
- dermatomyositis e.g., at
- the condition to be treated is one characterised by reduced IL-35 levels, particularly reduced circulating IL-35 levels in the serum.
- Reduced circulating IL-35 levels are seen in many human autoimmune diseases including Multiple sclerosis (MS), Chronic Obstructive Pulmonary Disease (COPD), allergic rhinitis, Ulcerative Colitis (UC), Crohn’s Disease (CD), Immune Thrombocytopenic Purpura (ITP), fetomatemal tolerance, Hashimoto’s thyroiditis, atherosclerosis, and coronary artery disease.
- MS Multiple sclerosis
- COPD Chronic Obstructive Pulmonary Disease
- UC Ulcerative Colitis
- CD Crohn’s Disease
- ITP Immune Thrombocytopenic Purpura
- fetomatemal tolerance Hashimoto’s thyroiditis
- atherosclerosis atherosclerosis
- coronary artery disease fetomatemal tolerance
- a binding molecule, in particular an antibody, of the present invention for use as a medicament.
- the present invention also provides for the use of a binding molecule of the present invention for the manufacture of a medicament for treating or preventing one of the conditions mentioned herein.
- a binding molecule, in particular an antibody, of the present invention is provided for use in a method of therapy of the human or animal body.
- a pharmaceutical composition comprising it may be also employed and vice versa unless stated otherwise, as may be a composition encoding an antibody of the invention.
- a binding molecule, in particular an antibody, of the present invention may also be used in in vitro diagnosis, for example such diagnosis performed on a sample from a subject.
- a binding molecule, in particular an antibody, of the present invention may be employed to treat a condition.
- the terms “treat” or “treatment” refer to both therapeutic treatment and prophylactic or preventative measures, wherein the object is to prevent or slow down (lessen) an undesired physiological change or disorder.
- Beneficial or desired clinical results include, but are not limited to, alleviation of symptoms, diminishment of extent of disease, stabilized (i.e., not worsening) state of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable. “Treatment” can also mean prolonging survival as compared to expected survival if not receiving treatment. Those in need of treatment include those already with the condition or disorder as well as those prone to have the condition or disorder or those in which the condition or disorder is to be prevented.
- the present invention provides a pharmaceutical composition
- a pharmaceutical composition comprising: (a) a binding molecule of the present invention; and (b) a pharmaceutically acceptable carrier, diluent, and/or excipient.
- the particularly preferred binding molecule for any of the pharmaceutical compositions of the present invention is an antibody of the present invention.
- a pharmaceutical composition of the present invention comprises a binding molecule of the present invention as well as a carrier, a stabilizer, an excipient, a diluent, a solubilizer, a surfactant, an emulsifier, a preservative and/or an adjuvant.
- a pharmaceutical composition of the present invention is in solid or liquid form.
- the pharmaceutical composition may be in the form of a powder, a tablet, a solution or an aerosol.
- a pharmaceutical composition of the present invention is provided in a frozen form.
- a pharmaceutical composition of the present invention is provided in lyophilized form.
- a pharmaceutical composition of the present invention will usually be supplied as a sterile, pharmaceutical composition.
- a pharmaceutical composition of the present invention may additionally comprise a pharmaceutically acceptable adjuvant. In another embodiment, no such adjuvant is present in a pharmaceutical composition of the present invention.
- the present invention also provides a process for preparation of a pharmaceutical or medicament composition comprising adding and mixing binding molecule of the present invention together with one or more of a pharmaceutically acceptable excipient, diluent or carrier.
- Pharmaceutically acceptable carriers in therapeutic compositions may additionally contain liquids such as water, saline, glycerol and ethanol. Such carriers may be used, for example, so that the pharmaceutical compositions to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurries and suspensions, for ingestion by the patient.
- pharmaceutically acceptable excipient typically refers to a pharmaceutically acceptable formulation carrier, solution or additive to enhance the desired characteristics of the compositions of the present invention.
- Excipients are well known in the art and include buffers (e.g., citrate buffer, phosphate buffer, acetate buffer, and bicarbonate buffer), amino acids, urea, alcohols, ascorbic acid, phospholipids, proteins (e.g., serum albumin), EDTA, sodium chloride, liposomes, mannitol, sorbitol, and glycerol. Solutions or suspensions can be encapsulated in liposomes or biodegradable microspheres. Suitable carriers may be large, slowly metabolised macromolecules such as proteins, polypeptides, liposomes, polysaccharides, polylactic acids, polyglycolic acids, polymeric amino acids, amino acid copolymers and inactive virus particles.
- buffers e.g., citrate buffer, phosphate buffer, acetate buffer, and bicarbonate buffer
- amino acids urea
- alcohols e.g., ascorbic acid
- proteins e.g., serum albumin
- salts can be used, for example mineral acid salts, such as hydrochlorides, hydrobromides, phosphates and sulphates, or salts of organic acids, such as acetates, propionates, malonates, and benzoates.
- mineral acid salts such as hydrochlorides, hydrobromides, phosphates and sulphates
- organic acids such as acetates, propionates, malonates, and benzoates.
- the pharmaceutical composition may contain formulation materials for the purpose of modifying, maintaining or preserving certain characteristics of the composition such as the pH, osmolarity, viscosity, clarity, color, isotonicity, odour, sterility, stability, rate of dissolution or release, adsorption or penetration.
- formulation materials for the purpose of modifying, maintaining or preserving certain characteristics of the composition such as the pH, osmolarity, viscosity, clarity, color, isotonicity, odour, sterility, stability, rate of dissolution or release, adsorption or penetration.
- Additional pharmaceutical compositions include formulations involving the antibody of the present invention in sustained or controlled delivery formulations. Techniques for formulating a variety of sustained- or controlled-delivery means are known to those skilled in the art.
- a binding molecule, in particular antibody, of the present invention may also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, in colloidal drug delivery systems, or in macroemulsions. Such techniques are also disclosed in Remington's Pharmaceutical Sciences.
- a subject will be typically administered a therapeutically effective amount of a pharmaceutical composition and hence of a binding molecule, in particular an antibody, of the present invention.
- therapeutically effective amount typically refers to an amount of a therapeutic agent needed to treat, ameliorate or prevent a targeted disease or condition, or to exhibit a detectable therapeutic or preventative effect.
- the precise therapeutically effective amount for a human subject will depend upon the severity of the disease state, the general health of the subject, the age, weight and gender of the subject, diet, time and frequency of administration, drug combination(s), reaction sensitivities, and tolerance/response to therapy. This amount can be determined by routine experimentation and is within the judgement of the clinician.
- a therapeutically effective amount will be from 0.01 mg/kg to 50 mg/kg, for example 0.1 mg/kg to 20 mg/kg per day.
- the dose may be 1 to 500 mg per day, such as 10 to 100, 200, 300 or 400 mg per day.
- the amount in a given dose is at least enough to bring about a particular function.
- a binding molecule, in particular an antibody, of the present invention may be given in combination with another treatment for the condition being treated.
- a binding molecule, in particular an antibody, of the present invention may be provided simultaneously, sequentially, or separately with such a further agent.
- an antibody of the present invention may be provided in the same pharmaceutical composition as a second therapeutic agent.
- the therapeutic agent of the invention when in a pharmaceutical preparation, may be present in unit dose forms.
- suitable doses may be calculated for patients according to their weight, for example suitable doses may be in the range of 0.01 to 20 mg/kg, for example 0.1 to 20 mg/kg, for example 1 to 20 mg/kg, for example 10 to 20 mg/kg or for example 1 to 15 mg/kg, for example 10 to 15 mg/kg.
- suitable doses may be within the range of 0.001 to 10 mg, 0.01 to 1000 mg, for example 0. 1 to 1000 mg, for example 0. 1 to 500 mg, for example 500 mg, for example 0. 1 to 100 mg, or 0.1 to 80 mg, or 0. 1 to 60 mg, or 0.
- a binding molecule, and in particular an antibody, of the present invention may be, for instance, lyophilized for storage and reconstituted in a suitable carrier prior to use. Lyophilization and reconstitution techniques can be employed.
- the binding molecules, in particular antibodies, and pharmaceutical compositions of this invention may be administered by any number of routes including, but not limited to, oral, intravenous, intramuscular, intra-arterial, intramedullary, intrathecal, intraventricular, transdermal, transcutaneous (for example, see WO 98/20734), subcutaneous, intraperitoneal, intranasal, enteral, topical, sublingual, intravaginal or rectal routes. Hyposprays may also be used to administer the pharmaceutical compositions of the invention. Direct delivery of the compositions will generally be accomplished by injection, subcutaneously, intraperitoneally, intravenously or intramuscularly, or delivered to the interstitial space of a tissue. In one preferred embodiment, administration is via intravenous administration.
- administration is via subcutaneous administration, for example via subcutaneous injection.
- the compositions can also be administered into a specific tissue of interest.
- administration is via site-specific or targeted local delivery techniques.
- site-specific or targeted local delivery techniques include various implantable depot sources of the antibody molecule or local delivery catheters, such as infusion catheters, indwelling catheters, or needle catheters, synthetic grafts, adventitial wraps, shunts and stents or other implantable devices, site specific carriers, direct injection, or direct application.
- Dosage treatment may be a single dose schedule or a multiple dose schedule.
- the product may take the form of a suspension, solution or emulsion in an oily or aqueous vehicle and it may contain formulary agents, such as suspending, preservative, stabilising and/or dispersing agents.
- the pharmaceutical may be in dry form, for reconstitution before use with an appropriate sterile liquid.
- a pharmaceutical composition comprising an antibody of the present invention is provided in lyophilised form. If a composition is to be administered by a route using the gastrointestinal tract, the composition will typically need to contain agents which protect the binding molecule, in particular antibody, from degradation but which release the binding molecule once it has been absorbed from the gastrointestinal tract.
- a nebulisable formulation according to the present invention may be provided, for example, as single dose units (e.g., sealed plastic containers or vials) packed in foil envelopes. Each vial contains a unit dose in a volume, e.g., 2 ml, of solvent/solution buffer.
- a pharmaceutical composition of the present invention may be provided in a receptacle that provides means for administration to a subject.
- a pharmaceutical composition of the present invention may be provided in a prefdled syringe. The present invention therefore provides such a loaded syringe. It also provides an auto-injector loaded with a pharmaceutical composition of the present invention.
- the formulation is provided as a formulation for topical administrations including inhalation.
- suitable inhalable preparations include inhalable powders, metering aerosols containing propellant gases or inhalable solutions free from propellant gases.
- Inhalable powders according to the invention containing the active substance may consist solely of the abovementioned active substances or of a mixture of the abovementioned active substances with physiologically acceptable excipient.
- These inhalable powders may include monosaccharides (e.g., glucose or arabinose), disaccharides (e.g., lactose, saccharose, maltose), oligo- and polysaccharides (e.g., dextranes), polyalcohols (e.g., sorbitol, mannitol, xylitol), salts (e.g., sodium chloride, calcium carbonate) or mixtures of these with one another.
- monosaccharides e.g., glucose or arabinose
- disaccharides e.g., lactose, saccharose, maltose
- oligo- and polysaccharides e.g., dextranes
- polyalcohols e.g., sorbitol, mannitol, xylitol
- salts e.g., sodium chloride, calcium carbonate
- Particles for deposition in the lung require a particle size less than 10 microns, such as 1-9 microns for example from 1 to 5 pm.
- the particle size of the active ingredient such as the antibody or fragment is of primary importance.
- the propellant gases which can be used to prepare the inhalable aerosols are known in the art. Suitable propellant gases are selected from among hydrocarbons such as n-propane, n-butane or isobutane and halohydrocarbons such as chlorinated and/or fluorinated derivatives of methane, ethane, propane, butane, cyclopropane or cyclobutane.
- the above mentioned propellent gases may be used on their own or in mixtures thereof.
- propellent gases are halogenated alkane derivatives selected from among TG 11, TG 12, TG 134a and TG227.
- halogenated hydrocarbons TG134a (1,1,1,2-tetrafluoroethane) and TG227 (1,1,1,2,3,3,3-heptafluoropropane) and mixtures thereof are particularly suitable.
- the propellent-gas- containing inhalable aerosols may also contain other ingredients such as cosolvents, stabilisers, surface -active agents (surfactants), antioxidants, lubricants and means for adjusting the pH. All these ingredients are known in the art.
- the propellant-gas-containing inhalable aerosols according to the invention may contain up to 5 % by weight of active substance. Aerosols according to the invention contain, for example, 0.002 to 5 % by weight, 0.01 to 3 % by weight, 0.015 to 2 % by weight, 0. 1 to 2 % by weight, 0.5 to 2 % by weight or 0.5 to 1 % by weight of active ingredient.
- topical administrations to the lung may also be by administration of a liquid solution or suspension formulation, for example employing a device such as a nebulizer, for example, a nebulizer connected to a compressor (e.g., the Pari LC-Jet Plus(R) nebulizer connected to a Pari Master(R) compressor manufactured by Pari Respiratory Equipment, Inc., Richmond, Va.).
- a nebulizer for example, a nebulizer connected to a compressor (e.g., the Pari LC-Jet Plus(R) nebulizer connected to a Pari Master(R) compressor manufactured by Pari Respiratory Equipment, Inc., Richmond, Va.).
- Nebulisable formulation according to the present invention may be provided, for example, as single dose units (e.g., sealed plastic containers or vials) packed in foil envelopes. Each vial contains a unit dose in a volume, e.g., 2 mL, of solvent/solution buffer.
- the present invention also provides a syringe loaded with a composition comprising an antibody of the invention.
- a pre-fdled syringe loaded with a unit dose of an antibody is provided.
- an autoinjector loaded with a binding molecule, in particular an antibody, of the invention is provided.
- an IV bag loaded with a pharmaceutical composition of the invention is provided.
- an antibody of the present invention may be administered by use of gene therapy.
- DNA sequences encoding the binding molecule, in particular antibody, under the control of appropriate DNA components are introduced into a patient such that the binding molecule, in particular antibody chains and so antibody, are expressed from the DNA sequences and assembled in situ.
- compositions of the invention can be administered directly to the subject.
- subject or “individual” or “animal” or “patient” or “mammal,” is meant any subject, particularly a mammalian subject, for whom diagnosis, prognosis, or therapy is desired.
- the subject to be treated is a mammal.
- Mammalian subjects include humans, domestic animals, farm animals, and zoo, sports, or pet animals such as dogs, cats, guinea pigs, rabbits, rats, mice, horses, cattle, cows, and so on.
- the subjects to be treated can be animals.
- the compositions are adapted for administration to humans.
- the subject is human.
- the subject is an animal model of one of the conditions recited herein.
- the present invention also extends to a kit comprising a binding molecule of the invention, in particular an antibody, of the invention, optionally with instructions for administration.
- the kit further comprises one or more reagents for performing one or more functional assays.
- a kit containing single -chambered or multi -chambered pre-fdled syringe is provided which is pre-fdled with a pharmaceutical composition of the invention.
- the invention also provides a kit for a single-dose administration unit which comprises a pharmaceutical composition of the invention.
- the kit comprises packaging.
- a binding molecule specific for the IL-35 receptor wherein the binding molecule is an agonist of the IL-35 receptor, with the binding molecule comprising:
- the binding sites for gp130 and IL-12R ⁇ 2 are VHH domain binding sites;
- the binding molecule is an antibody with at least one binding-site specific for the gp130 subunit of the IL-35 receptor and at least one binding-site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor.
- binding molecule of [ 1] or [2] wherein the binding molecule comprises a binding site specific for the IL-12R ⁇ 2 subunit of the IL-35 receptor which comprises:
- VHH antigen-binding domain that binds IL-12R ⁇ 2 comprising a set of three CDRs (CDR1, CDR2, and CDR3) selected from the sets of three CDRs of Table 1;
- VHH antigen-binding domain that binds IL-12R ⁇ 2 comprising a set of three CDRs (CDR1, CDR2, and CDR3) that correspond to a set of three CDRs of Table 1 apart from a maximum of ten amino acid sequence changes;
- VHH antigen-binding domain that binds IL-12R ⁇ 2 comprising a set of three CDRs (CDR1, CDR2, and CDR3) that have at least 90% sequence identity to a set of three CDRs of Table 1 ;
- binding molecule of [3] wherein the binding molecule comprises one or more of the following VHH antigen-domains:
- VHH antigen-binding domain that binds IL-12R ⁇ 2 and is selected from the VHH antigen-binding domain having the sequence of one of the VHH antigen-binding domains of Table 1;
- VHH antigen-binding domain that binds IL-12R ⁇ 2 and has at least 80% sequence identity to one of the VHH antigen-binding domains of Table 1;
- VHH antigen-binding domain that binds IL-12R ⁇ 2 and is a humanized version of one of VHH antigen-binding domains of Table 1;
- VHH antigen-binding domain that binds gp130 comprising a set of three CDRs (CDR1, CDR2, and CDR3) selected from the sets of three CDRs of Table 2B;
- VHH antigen-binding domain that binds gp130 comprising a set of three CDRs (CDR1, CDR2, and CDR3) that correspond to a set of three CDRs of Table 2B apart from a maximum of ten amino acid sequence changes;
- binding molecule of [5] wherein the binding molecule comprises one or more of the following VHH antigen-domains:
- VHH antigen-binding domain that binds gp130 and is selected from the VHH antigen-binding domain having the sequence of one of the VHH antigen-binding domains of Table 2B;
- VHH antigen-binding domain that binds gp130 and has at least 80% sequence identity to one of the VHH antigen-binding domains of Table 2B;
- VHH antigen-binding domain that binds gp130 and is a humanized version of one of VHH antigen-binding domains of Table 2B;
- binding molecule of any one of [1] to [6] which is a bispecific binding molecule wherein: (a) the binding molecule comprises a VHH comprising the same set of three CDRs for the IL-12R ⁇ 2 binding site and a VHH comprising the same set of three CDRs for the gp130 binding site as one of the bispecific binding molecules of Table 11 or 15;
- the binding molecule comprises a VHH comprising the same set of three CDRs for the IL-12R ⁇ 2 binding site apart from a maximum of ten amino acid sequence changes and the same set of three CDRs for the gp130 binding site apart from a maximum of ten amino acid sequence changes as one of the binding molecules of Table 11 or 15;
- the binding molecule comprises a VHH specific for IL-12R ⁇ 2 comprising a set of three CDRs for the IL-12R ⁇ 2 binding site with at least 95% sequence identity to a set of three CDRs for an IL-12R ⁇ 2 binding site of one of the bispecific binding molecules of Table 11 or 15 and a VHH specific for gp130 comprising a set of three CDRs with at least 95% sequence identity to a set of three CDRs for a gp130 binding site of the same bispecific binding molecules of Table 11 or 15; or
- the VHH antigen-binding domain specific for IL-12R ⁇ 2 can compete for binding with one of the VHH antigen binding domains specific for IL-12R ⁇ 2 of a bispecific binding molecule of Table 11 or 15 and the VHH antigen-binding domain specific for gp130 can compete for binding with the gp130 binding site of the same bispecific binding molecule of Table 11 or 15.
- (a) has the CDRs for the IL-12R ⁇ 2 and gp130 binding site from the bispecific molecule 1, 3, 5, 8 or 10 from Table 11 or the bispecific molecule 57, 61, 64, or 66 to 71 of Table 15;
- (b) has sets of CDRs for the IL-12R ⁇ 2 and gp130 binding site with a maximum of ten amino acid sequence changes per set compared to the bispecific molecule 1, 3, 5, 8 or 10 from Table 11 or the bispecific molecule 57, 61, 64, or 66 to 71 of Table 15;
- (c) has sets of CDRs for the IL-12R ⁇ 2 and gp130 binding site with at least 95% sequence identity compared to one of the bispecific molecule 1, 3, 5, 8 or 10 from Table 11 or the bispecific molecule 57, 61, 64, or 66 to 71 of Table 15; or
- (d) has a binding site for IL-12R ⁇ 2 that is able to compete for binding to one of the binding sites specific for IL-12R ⁇ 2 of the bispecific molecule 1, 3, 5, 8 or 10 from Table 11 or the bispecific molecule 57, 61, 64, or 66 to 71 of Table 15 and a binding site for gp130 which is able to compete for binding with the bispecific molecule 1, 3, 5, 8 or 10 from Table 11 or the bispecific molecule 57, 61, 64, or 66 to 71 of Table 15.
- binding molecule of any one of [1] to [8], wherein the binding molecule comprises VHH binding domains and an Fc region.
- binding molecule of [9] comprises two polypeptide chains each with two VHH binding domains, with one of the two VHH binding domains specific for IL-12R ⁇ 2 and the other specific for gp130; or
- (b) comprises two polypeptide chains each comprising a VHH binding domain and an Fc region, wherein the VHH binding domain of one of the polypeptides is specific for IL-12R ⁇ 2 and the other is specific for gp130, wherein the Fc regions of the polypeptides comprise amino acid sequences favouring heterodimer formation or allowing preferential purification of heterodimers.
- a bsVHH-Fc with sets of CDRs have at least 95% sequence identity to the sets of CDRs for the VHH IL-12R ⁇ 2 and VHH gp130 binding domains of one of the bispecific molecules of (a); or
- a KiH format binding molecule with sets of CDRs have at least 95% sequence identity to the sets of CDRs for the VHH IL-12R ⁇ 2 and VHH gp130 binding domains of KiH;
- KiH format binding molecule with VHH binding domains that are able to compete for binding to IL-12R ⁇ 2 and gp130 in comparison to the VHH binding domains of KiH.
- linkers are GGGGS or linkers comprising more than one copy of GGGGS.
- a pharmaceutical composition comprising a binding molecule according to any one of [1] to
- the binding molecule of any one of [1] to [14] or pharmaceutical composition of [15] for use is a method of treatment of the human or animal body.
- [17] The binding molecule of any one of [1] to [14] or pharmaceutical composition of [15] for use in treating, preventing an autoimmune or inflammatory disorder, or inducing immune tolerance.
- GVHD graft versus host disease
- COPD chronic obstructive pulmonary disorder
- ITP immune thrombocytopenia
- atherosclerosis and Diabetes.
- a method of treating or preventing an autoimmune or inflammatory disorder, or inducing immune tolerance comprising a binding molecule of any one of [1] to [14] or pharmaceutical composition of [15] to a subject in need thereof.
- GVHD graft versus host disease
- COPD chronic obstructive pulmonary disorder
- ITP immune thrombocytopenia
- atherosclerosis and Diabetes.
- a method for detecting association of the IL-12R ⁇ 2 and gp130 receptor subunits comprising: (a) contacting a candidate molecule with a cell expressing modified versions of IL-12R ⁇ 2 and gp130 receptor subunits which have been modified so when they associate a detectable signal is produced;
- the detectable signal is the activation of an enzyme
- the detectable signal is the activation of luciferase.
- Example 1 Generation of bispecific antibodies targeting gp130 and IL-12R ⁇ 2
- gp 130 immunization a male and female llama were subcutaneously injected on days 0, 14, 28 and 42, each time with a mixture of recombinant human gp130 fused to hlgGl Fc-His6 at the C- terminus (hgp130-Fc) (R&D Systems, Cat. No. 671-GP-100), recombinant mouse gp130 fused to hlgGl Fc-His6 at the C-terminus (mgp130-Fc) (R&D Systems, Cat. No. 468-MG), tagless human gp130 (produced in-house), and tagless mouse gp130 (produced in-house) in combination with Gerbu adjuvant P.
- hgp130-Fc recombinant human gp130 fused to hlgGl Fc-His6 at the C-terminus
- mgp130-Fc recombinant mouse gp130 fused to hl
- IL-12R ⁇ 2 immunization a male and female llama were subcutaneously injected on days 0, 14, 28 and 42, each time with a mixture of recombinant human IL-12R ⁇ 2 fused to hlgGl Fc-His6 at the C-terminus (hIL-12R ⁇ 2-Fc) (R&D Systems, Cat. No. 1959-B2B-050), recombinant mouse IL- 12R ⁇ 2 fused to hlgGl Fc-His6 at the C-terminus (mIL-12R ⁇ 2-Fc) (R&D Systems, Cat. No. 7406-MR- 050), tagless human IL-12R ⁇ 2 (produced in-house), and tagless mouse IL-12R ⁇ 2 (produced in-house) in combination with Gerbu adjuvant P.
- hIL-12R ⁇ 2-Fc recombinant human IL-12R ⁇ 2 fused to hlgGl Fc-His6 at the C-terminus
- VHH regions of llama heavy chain-only antibodies were constructed from each llama’s lymphocytes to screen for the presence of antigen-specific VHHs.
- total RNAs from peripheral blood lymphocytes from 4 d.p.i. & 8 d.p.i. were pooled per animal and used as template for cDNA synthesis.
- the VHH encoding sequences were amplified by PCR and cloned into the pMECS phagemid vector.
- Phagemid libraries were separately panned in solution on either Avi- tagged, site specifically biotinylated human or mouse gp130-avi-his (produced in-house), or random biotinylated human or mouse IL-12R ⁇ 2 (produced in-house) for 3 rounds. Colonies from each panning set were analyzed by ELISA for the presence of antigen-specific VHHs in their periplasmic extracts. The screening ELISA was performed on the same human and mouse avi -tagged, biotinylated gp 130/IL- 12R ⁇ 2, using streptavidin-coated blocked wells as negative control. Based on sequence data of the positive colonies, the number of unique full length VHHs were determined and categorized in different CDR3 groups.
- the ability of human -specific anti-gp130 VHHs to compete with IL-6 cytokine signaling was determined using the HEK-Blue IL-6 reporter cell line (Invivogen, #hkb-il6), these cells express endogenous levels of gp130 and overexpress IL-6R, STAT3 and a STAT3 -dependent secreted embryonic alkaline phosphatase (SEAP) reporter gene.
- Cell culture was performed according to the manufacturer’s protocol. Cells were seeded at 50,000 cells/well of a 96-well plate, and pre-incubated with three dilutions of anti-gp130 VHH-containing P.E.
- VHH clones (1/5-1/50-1/500), or 1 pg/ml anti-gp130 blocking antibody (clone B-R3), for 30 minutes at room temperature. Subsequently, cells were stimulated with 0.1 ng/ml human recombinant IL-6 (in-house produced). After 24 hours culturing at 37°C in a CO2 incubator the SEAP levels were measured by adding culture supematans to Quanti-Blue substrate. Colorimetric changes were measure at O.D. 650 nm using a iMark Microplate Absorbance Reader. The inhibitory capacity of VHH clones was determined as percent decreased activity compared to IL-6 stimulated cells treated with P.E. that does not contain a VHH.
- VHH clones were considered to block IL-6 signaling when they show more than 50% reduction of IL-6 activity.
- CDR3 families were categorised as IL-6 competing if 50% or more of the clones show 50% or more reduced IL-12 activity. The results are summarized in Table 7, data of selected clones can be found in Figure 1. 26 out of 62 tested CDR3 groups were considered to be IL-6 competing.
- anti-IL-12R ⁇ 2 VHH which show binding to human-only or human and mouse IL-12R ⁇ 2 in the ELISA screening, to compete with IL- 12 cytokine signaling was determined using the HEK-Blue IL-12 reporter cell line (Invivogen, #hkb-il 12), these cells overexpress IL-12R ⁇ 1, IL-12R ⁇ 2 and a STAT4-dependent secreted embryonic alkaline phosphatase (SEAP) reporter gene. Cell culture was performed according to the manufacturer’s protocol. Cells were seeded at 50,000 cells/well of a 96-well plate, and pre-incubated with three dilutions of anti-IL-12R ⁇ 2 VHH-containing P.E.
- SEAP STAT4-dependent secreted embryonic alkaline phosphatase
- VHH clones were considered to block IL- 12 signaling when they showed more than 50% reduction of IL- 12 activity.
- CDR3 families were categorised as IL-12 competing if 50% or more of the clones show 50% or more reduced IL-12 activity. These results are summarized in Table 8, with data of selected clones shown in Figure 1. 16 out of 32 tested CDR3 groups were considered to be IL-12 competing.
- Table 1 Amino acid sequence of anti-IL-12Rp2 VHHs
- Example 2 Construction and characterization of bispecific VHHs targeting gp130 and IL-12R ⁇ 2
- VHH clones specific forgp130 and 4 clones specific for IL-12R ⁇ 2 were selected (Table 9 and Table 10).
- the gp130 VHH was C-terminally fused to the IL-12R ⁇ 2 VHH by a (G 4 S) 7 linker, and C-terminal to the IL-12R ⁇ 2 VHH a HA and His-tag was added.
- bsVHHs where either the gp130 or IL- 12R ⁇ 2 VHH was replaced by an irrelevant VHH targeting BCII10, the subunit 10 of the P-lactamase Bell enzyme of Bacillus cereus (Conrath et al, 2001.
- Table 11 summarizes the bsVHH constructs with their identifier.
- the bispecific VHH constructs were produced in bacteria, and purified by Immobilized Metal Affinity Chromatography (IMAC).
- Table 10 Binding and competition characteristics of selected anti-IL-12R ⁇ 2 VHH clones for bsVHH construction
- Table 11 Overview of the first design wave of bispecific VHH(-Fc) constructs
- NanoLuc Binary Technology (NanoBiT) was adopted to develop a luciferase-based gp130-IL-12R ⁇ 2 dimerization assay.
- the Large BiT (LgBiT; 17.6kDa) and Small BiT (SmBiT; 11 amino acids) subunits were fused to either gp130 or IL-12R ⁇ 2, and when expressed, the gp130-IL- 12R ⁇ 2 protein-protein interaction brings the LgBit and SmBit in close proximity to form the functional NanoLuc enzyme that generates a luminescent signal.
- the bispecific anti-gp130/IL-12R ⁇ 2 VHHs were tested in the gp130-IL-12R ⁇ 2 NanoBiT dimerization assay. For this, 150,000 HEK293T cells were seeded in a clear-bottom black 96 well culture plate in 100 pl of ‘complete DMEM culture media’ (DMEM media (Gibco, 41965) supplemented with 10% FCS and L-glutamin).
- DMEM media Gibco, 41965
- BsVHH-1, -3, -8 are able to induce gp130 and IL-12R ⁇ 2 dimerization which results complementation of the intracellular fused NanoBiT enzyme. BsVHHs were compared to the corresponding single VHHs as negative control.
- aHEK-Blue IL-12 SEAP reporter cell line (Invivogen, #hkb-il 12) was used as the cells have endogenous gp130 expression and had been engineered to express IL-12R ⁇ 2.
- HEK-Blue IL- 12 cells were seeded in a 24-well plate in complete DMEM medium and incubated for 24 hours.
- the cells were stimulated with 2 pg/ml anti-gp130/IL- 12R ⁇ 2 VHHs or 100 ng/ml rhIL-6 or rhIL-12 (produced in-house) for 30 minutes and subsequently washed with ice cold PBS and lysed in laemmli buffer. Lysates were boiled for 10 minutes at 95°C before separating by SDS-PAGE and were subsequently immunoblotted to a nitrocellulose membrane. The membrane was blocked (TBS-Tween-20 with 5% milk powder) and probed with the primary anti- phospho(Tyr705)-STAT3 antibody (Cell Signaling Technologies, Cat#9138). After washing, the immunoblots were detected with anti-mouse-HRP antibody.
- the band intensity of the immunoblots were quantified using Image Studio software.
- the band intensity of pSTAT3 was normalized to that of untreated conditions and scaled to the percentage of pSTAT3 induction of IL-12.
- Results are depicted in Figure 2, and show that BsVHH-3 (18439-20422) is the most potent bsVHH with a pSTAT3 signal in the range of IL-12 stimulation.
- BsVHH-3 (18439-20422) is the most potent bsVHH with a pSTAT3 signal in the range of IL-12 stimulation.
- IL-12 has been described to most potently induce pSTAT4, however HEK-Blue IL- 12 cells have very low STAT4 expression, which results in a skewed activation to pSTATl and pSTAT3.
- Example 3 Construction and characterization of bispecific VHH antibodies targeting gp130 and IL-12R ⁇ 2
- bivalent bispecific anti-gp130/IL-12R ⁇ 2 antibodies were generated.
- the gp130 VHH-(G4S)7-IL-12R ⁇ 2 VHHs were fused C-terminally through the IgGl hinge sequence to a human IgGl Fc domain ( Figure 4).
- Antibody molecules were produced by transient transfection in HEK293T cells and purified from cell supernatant by protein A affinity chromatography.
- B gp130 and IL-12R ⁇ 2 dimerization by bispecific antibodies targeting gp130 and IL-12R ⁇ 2
- bispecific anti-gp130/IL-12R ⁇ 2 VHH-Fc antibodies to induce gp130 and IL- 12R ⁇ 2 dimerization was assessed by making use of the NanoBiT dimerization assay (as described in example 2). Briefly, HEK293T cells transfected with the pBiTl.l-C-gp130 and pBiT1.2-C-IL-12R ⁇ 2 plasmids were stimulated with approximately 2-4 pg/ml of batch purified bsVHH-Fc proteins. The results are listed in table 13.
- Table 13 Nanobit clustering characteristics of selected anti-gp130/IL-12R ⁇ 2 bsVHHs C: STAT activation by bispecific antibodies targeting gp130 and IL-12R ⁇ 2
- the bsVHH-Fc clones were tested for the ability to activate STAT3 phosphorylation downstream of the gp130 and IL-12R ⁇ 2 heterodimers making use of the HEK-Blue IL- 12 cells as described in Example 2.
- HEK-Blue IL-12 cells were stimulated for 30 minutes with purified anti- gp130/IL-12R ⁇ 2 bsVHHs, 100 ng/ml rhIL-6 or rhIL-12 and subsequently analyzed by western blotting for STAT3 phosphorylation. It was found that fusion of the bsVHH to an Fc domain enhanced the efficacy of bsVHHs to trigger STAT3 activation (Figure 3).
- bsVHH-Fc-3 An orientation variant of bsVHH-Fc-3 was generated in which the gp130 and IL-12R ⁇ 2 VHH domains were switched from the gp130 VHH-(G4S)7-IL-12R ⁇ 2 VHH-Fc format to an IL-12R ⁇ 2 VHH- (G 4 S) 7 -gp130 VHH-Fc format (referred to as bsVHH-45).
- the potency of both “gp130-IL-12R ⁇ 2” and “IL-12R ⁇ 2-gp130” bsVHH-Fc geometries to induce STAT3 phosphorylation was compared in HEK- Blue IL-12 cells, which was analysed by flow cytometry.
- Dead cells were excluded from the analysis by using a Fixable Viability Dye eFluor780 (FVD780, eBioscience, Cat# 65-0865-18).
- Flow cytometric measurements were performed on a BD LSR flow cytometer (BD Biosciences). Results are represented in Figure 4. It was found that the order of the anti-gp130 VHH clone 18406 and anti-IL- 12R ⁇ 2 VHH clone 20422 in the bsVHH-Fc format did not affect the potency to induce STAT3 phosphorylation.
- the linker length of bsVHH-Fc3 was varied from 7 (G4S) repeats to GGGGS (G 4 S) 1 and analyzed again the potency to induce STAT3 activation in HEK-Blue IL- 12 cells using flow cytometry. Data is depicted in Figure 4. Shortening the linker of bsVHH-Fc-3 to (G 4 S) 5 increases the efficacy of STAT3 activation in HEK-Blue IL-12 cells, however efficacy is lost when further shortening to (G 4 S) 1 .
- a monovalent knob-into-hole format presenting one anti-gp130 VHH on the ‘knob’ Fc and one anti-IL-12R ⁇ 2 VHH on the ‘hole’ Fc was evaluated.
- the anti-gp130 or anti-IL-12R ⁇ 2 VHHs from selected bsVHHs were fused to human IgGl hinge plus Fc region.
- the Fc domains comprised either the E357K and E399K or K392D and K409D amino acid substitutions (EU numbering) to generate respectively a ‘knob’ or ‘hole’ Fc chains to allow heterodimeric knob-into-hole Fc assemble based on inverted charges (Gunasekaran et al.
- knob-into-hole antibodies were produced by transient co-transfection of plasmids expressing both the knob and hole chain in HEK293T cells and were purified from the supernatant by protein A affinity chromatography.
- Knob-into-hole versions of bsVHH- 1 (VHH clones 18406-20422), bsVHH-3 (VHH clones 18439-20422), bsVHH-8 (VHH clones 18406-20432), and bsVHH-10 (VHH clones 184369- 20432), respectively KiH-1, KiH-3, KiH-8 and KiH-10, were tested as describe above in HEK-Blue IL- 12 cells for their ability to induce STAT3 activation by flow cytometry. Data is depicted in Figure 4. Only KiH-8 was able to induce significant STAT3 activation.
- Example 5 Broadening of bsVHH-Fc repertoire - second design wave
- the bispecific VHH-Fc combinations were expanded by selecting anti-gp130 VHH clones that generated active bsVHH-Fc molecules and combining these with new anti-IL-12R ⁇ 2 clones.
- anti-gp130 clones 18406 (used for bsVHH-Fc-1 and -8) and clone 18439 (used for bsVHH-Fc-3 and -10) were each combined with 9 new anti-IL-12R ⁇ 2 VHH clones in the bsVHH-Fc format with the VHHs in the order ‘gp130-IL-12R ⁇ 2’ starting from the mostN-terminal (Table 14 and 15).
- Table 14 Binding and competition characteristics of selected anti-IL-12R ⁇ 2 VHH clones for bsVHH construction
- Table 15 Overview of the second design wave of bispecific VHH(-Fc) constructs
- Example 6 Induction of IL-10 in gp130-IL-12R ⁇ 2 positive T cell line
- the potency of selected anti-gp130/IL-12R ⁇ 2 bispecific VHH-Fc antibodies to induce production of the immune suppressive cytokine IL-10 was analyzed in the ‘Jurkat-gp130-IL-12R ⁇ 2’ cells (described in example 5). The cells were seeded at 500,000 cells/well of a 96 well plate in complete RPMI media and stimulated with different doses of bsVHH-Fc-3 and KiH-8 for 24 hours. As negative control, the anti-IL-12R ⁇ 2 VHH subunit of bsVHH-Fc-3 was substituted for the irrelevant BCII10 VHH, referred to as bsVHH-Fc-30.
- the bispecific VHH-Fc combinations were expanded in a new design wave by selecting anti-IL-12R ⁇ 2 VHH clones that generated potent bsVHH-Fc molecules in design wave 1 and 2 and combining these with new anti-gp130 clones from new CDR3 VHH families to introduce more diversity.
- anti-IL-12R ⁇ 2 clones 20407 (used for bsVHH-Fc-70), clone 20432 (used for KiH-8), and clone 20391 (used for bsVHH-Fc-71) were each combined with 19 new anti-gp130 VHH clones in the bsVHH-Fc format with the VHHs in the order ‘gp130-IL-12R ⁇ 2’ starting from the N-terminal side (Table 16 and 17).
- Table 16 Binding and competition characteristics of selected anti-gp130 VHH clones for bsVHH construction.
- FIG. 7A we depict the dose-response data for the screened bsVHH-Fc molecules with higher potency and/or efficacy compared to bsVHH-Fc-71. Particulary, bsVHH-Fc-77 demonstrated to have the highest potency and efficacy in inducing pSTAT3 upon receptor activation.
- biparatopic bispecific anti-gp130/IL-12R ⁇ 2 binding molecules by making use of the knob- into-hole technology as described in Example 4. For example we generated a KiH-107/108 molecule, which constitutes the monovalent bispecific arm of bsVHH-Fc-107 on the ‘knob’ Fc and the monovalent bispecific arm of bsVHH-Fc-108 on the ‘hole’ Fc.
- KiH- 71/77 ( Figure 8B), which combines the a-gp130/IL-12RB2 VHH clones from bsVHH-Fc-71 and -77.
- Using the Jurkat-gp130-IL-12R ⁇ 2 cells we demonstrated that the biparatopic bispecific KiH-71/77 and -107/108 molecules are able to induce pSTAT3 activation downstream of the IL-35 receptor ( Figure 8C).
- amino acid sequences for the polypeptides of the bsVHH-Fc-71 knob, bsVHH-Fc-77 hole, bsVHH- Fc-107 hole and bsVHH-Fc-108 polyptides used to form the antigen binding proteins studied are set out in Table 18 below.
- C-terminal His tags were employed, but are not indicated in the sequences. Such His tags are optional in the sense that they will only be included where purification by His tags is being used.
- CD4 T cells were enriched from different PBMC donors and seeded at 10 6 cells/ml in presence of anti-CD3/CD28 antibodies (Ab clones, HIT3a and CD28.2, respectively, both at 2 pg/ml) to activate the cells.
- the latter T cell receptor stimulation is required to upregulated the expression of IL12RB2, which is not expressed in naive CD4 T cells.
- Forty-eight hours after TCR activation the T cells were depleted of a-CD3/CD28 antibodies and IL-2 and rested overnight.
- the cells were stimulated with different doses of bsVHH-Fc-77 and incubated for 30 minutes. Cells were then stained with Fixable Viability Dye eFluorTM 780 fixed with paraformaldehyde (2% final concentration) for 10 minutes at room temperature, washed with FACS buffer, and incubated with BD Phosflow Perm Buffer III (BD Biosciences) for 30 minutes on ice.
- Fixable Viability Dye eFluorTM 780 fixed with paraformaldehyde (2% final concentration) for 10 minutes at room temperature, washed with FACS buffer, and incubated with BD Phosflow Perm Buffer III (BD Biosciences) for 30 minutes on ice.
- FIG. 9B depicts the percentage of gp130 and IL-12RB2 single and double positive cells among the CD4+ CD25+ T cells at the moment of bsVHH-Fc-77 stimulation.
- bsVHH-Fc-77 significantly induces IL-10 production at 0.1 nM ( Figure 10), which correlates with the dose inducing a maximal efficacy in the pSTAT3 assay ( Figure 9A).
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