EP4445327A4 - PRIMARY ANALYSIS IN NEXT GENERATION SEQUALIZATION - Google Patents

PRIMARY ANALYSIS IN NEXT GENERATION SEQUALIZATION

Info

Publication number
EP4445327A4
EP4445327A4 EP22905192.5A EP22905192A EP4445327A4 EP 4445327 A4 EP4445327 A4 EP 4445327A4 EP 22905192 A EP22905192 A EP 22905192A EP 4445327 A4 EP4445327 A4 EP 4445327A4
Authority
EP
European Patent Office
Prior art keywords
sequalization
next generation
primary analysis
primary
analysis
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
EP22905192.5A
Other languages
German (de)
French (fr)
Other versions
EP4445327A1 (en
Inventor
Chunhong Zhou
Semyon Kruglyak
Francisco Garcia
Minghao Guo
Haosen Wang
Ryan Kelly
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Element Biosciences Inc
Original Assignee
Element Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US17/547,602 external-priority patent/US11397870B2/en
Priority claimed from US17/725,065 external-priority patent/US12371743B2/en
Priority claimed from US17/725,042 external-priority patent/US12359193B2/en
Application filed by Element Biosciences Inc filed Critical Element Biosciences Inc
Publication of EP4445327A1 publication Critical patent/EP4445327A1/en
Publication of EP4445327A4 publication Critical patent/EP4445327A4/en
Pending legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T7/00—Image analysis
    • G06T7/10—Segmentation; Edge detection
    • G06T7/11—Region-based segmentation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/10—Image acquisition modality
    • G06T2207/10056—Microscopic image
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T2207/00—Indexing scheme for image analysis or image enhancement
    • G06T2207/30—Subject of image; Context of image processing
    • G06T2207/30004—Biomedical image processing
    • G06T2207/30024—Cell structures in vitro; Tissue sections in vitro
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Molecular Biology (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • General Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Signal Processing (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Software Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
EP22905192.5A 2021-12-10 2022-12-09 PRIMARY ANALYSIS IN NEXT GENERATION SEQUALIZATION Pending EP4445327A4 (en)

Applications Claiming Priority (8)

Application Number Priority Date Filing Date Title
US17/547,602 US11397870B2 (en) 2020-08-31 2021-12-10 Single-pass primary analysis
US202263316790P 2022-03-04 2022-03-04
US202263316784P 2022-03-04 2022-03-04
US17/725,065 US12371743B2 (en) 2022-03-04 2022-04-20 Double-stranded splint adaptors and methods of use
US17/725,042 US12359193B2 (en) 2022-03-04 2022-04-20 Single-stranded splint strands and methods of use
US202263349421P 2022-06-06 2022-06-06
US17/854,042 US11915444B2 (en) 2020-08-31 2022-06-30 Single-pass primary analysis
PCT/US2022/052449 WO2023107720A1 (en) 2021-12-10 2022-12-09 Primary analysis in next generation sequencing

Publications (2)

Publication Number Publication Date
EP4445327A1 EP4445327A1 (en) 2024-10-16
EP4445327A4 true EP4445327A4 (en) 2026-01-14

Family

ID=86731140

Family Applications (1)

Application Number Title Priority Date Filing Date
EP22905192.5A Pending EP4445327A4 (en) 2021-12-10 2022-12-09 PRIMARY ANALYSIS IN NEXT GENERATION SEQUALIZATION

Country Status (6)

Country Link
EP (1) EP4445327A4 (en)
JP (1) JP2025500808A (en)
KR (1) KR20240162477A (en)
AU (1) AU2022407176A1 (en)
CA (1) CA3240445A1 (en)
WO (1) WO2023107720A1 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10704094B1 (en) 2018-11-14 2020-07-07 Element Biosciences, Inc. Multipart reagents having increased avidity for polymerase binding
US12391929B2 (en) 2019-05-24 2025-08-19 Element Biosciences, Inc. Polymerase-nucleotide conjugates for sequencing by trapping
AU2022316142A1 (en) 2021-07-21 2024-02-22 Element Biosciences, Inc. Optical systems for nucleic acid sequencing and methods thereof

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8965076B2 (en) * 2010-01-13 2015-02-24 Illumina, Inc. Data processing system and methods
EP3051450A1 (en) * 2015-02-02 2016-08-03 Applied Maths Method of typing nucleic acid or amino acid sequences based on sequence analysis
CN111655855B (en) * 2017-09-14 2025-09-09 生命明疗法股份有限公司 Human therapeutic targets and modulators thereof
US20190130999A1 (en) * 2017-10-26 2019-05-02 Indigo Ag, Inc. Latent Representations of Phylogeny to Predict Organism Phenotype
US12009060B2 (en) * 2018-12-14 2024-06-11 Merck Sharp & Dohme Llc Identifying biosynthetic gene clusters
EP3924505B1 (en) * 2019-02-12 2025-12-17 10X Genomics, Inc. Methods for processing nucleic acid molecules

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
KIRCHER MARTIN ET AL: "Addressing challenges in the production and analysis of illumina sequencing data", BMC GENOMICS, vol. 12, no. 1, 1 December 2011 (2011-12-01), London, UK, XP093232508, ISSN: 1471-2164, DOI: 10.1186/1471-2164-12-382 *

Also Published As

Publication number Publication date
CA3240445A1 (en) 2023-06-15
AU2022407176A1 (en) 2024-06-27
WO2023107720A1 (en) 2023-06-15
EP4445327A1 (en) 2024-10-16
KR20240162477A (en) 2024-11-15
JP2025500808A (en) 2025-01-15

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