EP4295157A1 - Methods for modulating host cell surface interactions with herpesviruses - Google Patents
Methods for modulating host cell surface interactions with herpesvirusesInfo
- Publication number
- EP4295157A1 EP4295157A1 EP22708701.2A EP22708701A EP4295157A1 EP 4295157 A1 EP4295157 A1 EP 4295157A1 EP 22708701 A EP22708701 A EP 22708701A EP 4295157 A1 EP4295157 A1 EP 4295157A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- antagonist
- binding
- protein
- antibody
- antigen
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1055—Protein x Protein interaction, e.g. two hybrid selection
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/569—Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
- G01N33/56983—Viruses
- G01N33/56994—Herpetoviridae, e.g. cytomegalovirus, Epstein-Barr virus
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1037—Screening libraries presented on the surface of microorganisms, e.g. phage display, E. coli display
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/18—Testing for antimicrobial activity of a material
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6845—Methods of identifying protein-protein interactions in protein mixtures
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/005—Assays involving biological materials from specific organisms or of a specific nature from viruses
- G01N2333/01—DNA viruses
- G01N2333/03—Herpetoviridae, e.g. pseudorabies virus
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/005—Assays involving biological materials from specific organisms or of a specific nature from viruses
- G01N2333/01—DNA viruses
- G01N2333/03—Herpetoviridae, e.g. pseudorabies virus
- G01N2333/04—Varicella-zoster virus
- G01N2333/045—Cytomegalovirus
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2500/00—Screening for compounds of potential therapeutic value
- G01N2500/02—Screening involving studying the effect of compounds C on the interaction between interacting molecules A and B (e.g. A = enzyme and B = substrate for A, or A = receptor and B = ligand for the receptor)
Definitions
- kits for treating or preventing herpesvirus infection comprising modulating interactions between herpesvirus surface proteins and plasma membrane-expressed host cell proteins, as well as methods of identifying modulators of such interactions.
- Herpesviridae is a family of DNA viruses that cause infection (including latent, unapparent, and reactivating infection) and disease in animals, including humans.
- Herpesviruses include herpes simplex virus 2 (HSV-2), which causes genital herpes and herpes simplex encephalitis; Macacine alphaherpesvirus (MCHV), which causes dangerous zoonotic infections in humans; Human cytomegalovirus (HCMV); varicella zoster virus (VZV), which causes chicken pox and shingles; and human herpesvirus 8, which causes Kaposi’s sarcoma, HHV-associated multicentric Castleman’s disease, primary effusion lymphoma, and KSHV inflammatory cytokine syndrome.
- HSV-2 herpes simplex virus 2
- MCHV Macacine alphaherpesvirus
- HCMV Human cytomegalovirus
- VZV varicella zoster virus
- human herpesvirus 8 which causes Kaposi’s sarcoma, HHV-associated multicentric Castleman’s disease, primary effusion lymphoma, and KSHV inflammatory cytokine syndrome.
- the invention provides a method of identifying a modulator of the interaction between a protein of Table 1 and a protein of Table 2, the method comprising (a) providing a candidate modulator; (b) contacting a protein of Table 1 with a protein of Table 2 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 1 to the protein of Table 2, wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring the binding of the protein of Table 1 to the protein of Table 2, wherein an increase or decrease in binding in the presence of the candidate modulator relative to binding in the absence of the candidate modulator identifies the candidate modulator as a modulator of the interaction between the protein of Table 1 and the protein of Table 2.
- the invention provides a method of identifying a modulator of a downstream activity of a protein of Table 1 , the method comprising (a) providing a candidate modulator; (b) contacting the protein of Table 1 with a protein of Table 2 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 1 to the protein of Table 2, wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring a downstream activity of the protein of Table 1 , wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the protein of Table 1 .
- the invention provides a method of identifying a modulator of a downstream activity of a protein of Table 2, the method comprising (a) providing a candidate modulator; (b) contacting the protein of Table 2 with a protein of Table 1 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 2 to the protein of Table 1 , wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring a downstream activity of the protein of Table 2, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the protein of Table 2.
- the increase or decrease in binding is at least 70%, as measured by a surface plasmon resonance (SPR) assay, a BLI assay, or an enzyme-linked immunosorbent assay (ELISA).
- SPR surface plasmon resonance
- BLI BLI
- ELISA enzyme-linked immunosorbent assay
- the modulator is an inhibitor of the downstream activity of the protein of Table 1 or Table 2. In other aspects, the modulator is an activator of the downstream activity of the protein of Table 1 or Table 2.
- the change in the downstream activity is a decrease in the amount, strength, or duration of the downstream activity. In other aspects, the change in the downstream activity is an increase in the amount, strength, or duration of the downstream activity.
- the downstream activity is infection of a cell by a member of the viral family Herpesviridae.
- infection is decreased in the presence of the modulator. In some aspects, infection is decreased by at least 40%, as measured in a viral infection assay or a viral entry assay.
- the modulator is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, an antisense oligonucleotide, or a small interfering RNA (siRNA).
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an ScFab, a VH domain, or a VHH domain.
- the antibody or antigen-binding fragment thereof binds the protein of Table 1 .
- the antibody or antigen-binding fragment thereof binds the protein of Table 2.
- the invention provides a method of treating an individual having a herpes simplex virus 2 (HSV-2) infection comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- HSV-2 herpes simplex virus 2
- the invention provides a method of decreasing HSV-2 infection in an individual comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- the CSPG5 antagonist results in a decrease in the binding of CSPG5 and the HSV-2 glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist
- the PRRG2 antagonist results in a decrease in the binding of PRRG2 and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the UNC5D antagonist results in a decrease in the binding of UNC5D and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the PLB1 antagonist results in a decrease in the binding of PLB1 and the HSV-2 gD protein relative to binding of the two proteins in the absence of the antagonist.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist reduces the extent and/or severity of HSV-2 infection of the individual relative to infection in the absence of the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist, respectively.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a peptide.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HSV-2 gG protein and inhibits its binding to CSPG5, PRRG2, and/or UNC5D; or (b) the antibody or antigen-binding fragment thereof binds the HSV-2 gD protein and inhibits its binding to PLB1 .
- the antibody or antigen-binding fragment thereof binds CSPG5, PRRG2, UNC5D, or PLB1 .
- the antibody or antigen-binding fragment thereof inhibits the binding of CSPG5, PRRG2, or UNC5D to the HSV-2 gG protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of PLB1 to the HSV-2 gD protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the individual has genital herpes or herpes simplex encephalitis.
- the individual is a human.
- the invention provides a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist for use as a medicament.
- the medicament is for treating an HSV2 infection.
- the medicament is for treating genital herpes or herpes simplex encephalitis.
- the CSPG5 antagonist results in a decrease in the binding of CSPG5 and the HSV-2 glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist
- the PRRG2 antagonist results in a decrease in the binding of PRRG2 and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the UNC5D antagonist results in a decrease in the binding of UNC5D and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the PLB1 antagonist results in a decrease in the binding of PLB1 and the HSV-2 gD protein relative to binding of the two proteins in the absence of the antagonist.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a peptide.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HSV-2 gG protein and inhibits its binding to CSPG5, PRRG2, and/or UNC5D; or (b) the antibody or antigen-binding fragment thereof binds the HSV-2 gD protein and inhibits its binding to PLB1 .
- the antibody or antigen-binding fragment thereof binds CSPG5, PRRG2,
- the antibody or antigen-binding fragment thereof inhibits the binding of CSPG5, PRRG2, or UNC5D to the HSV-2 gG protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of PVRL1 or PLB1 to the HSV-2 gD protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for treatment of an HSV-2 infection.
- the invention provides use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for treatment of genital herpes or herpes simplex encephalitis.
- the invention provides use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HSV-2.
- the CSPG5 antagonist results in a decrease in the binding of CSPG5 and the HSV-2 glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist
- the PRRG2 antagonist results in a decrease in the binding of PRRG2 and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the UNC5D antagonist results in a decrease in the binding of UNC5D and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the PLB1 antagonist results in a decrease in the binding of PLB1 and the HSV-2 gD protein relative to binding of the two proteins in the absence of the antagonist.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a peptide.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HSV-2 gG protein and inhibits its binding to CSPG5, PRRG2, and/or UNC5D; or (b) the antibody or antigen-binding fragment thereof binds the HSV-2 gD protein and inhibits its binding to PLB1 .
- the antibody or antigen-binding fragment thereof binds CSPG5, PRRG2,
- the antibody or antigen-binding fragment thereof inhibits the binding of CSPG5, PRRG2, or UNC5D to the HSV-2 gG protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of PVRL1 or PLB1 to the HSV-2 gD protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides a method of treating an individual having a macacine alphaherpesvirus (MCHV) infection comprising administering to the individual an effective amount of a PILRA antagonist.
- MCHV macacine alphaherpesvirus
- the invention provides a method of decreasing MCHV infection in an individual comprising administering to the individual an effective amount of a PILRA antagonist.
- the PILRA antagonist results in a decrease in the binding of PILRA and the MCHV glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist.
- the PILRA antagonist reduces the extent and/or severity of MCHV infection of the individual relative to infection in the absence of the PILRA antagonist.
- the PILRA antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the PILRA antagonist is a peptide.
- the PILRA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA.
- the antibody or antigen-binding fragment thereof binds PILRA. In some aspects, the antibody or antigen-binding fragment thereof inhibits the binding of PILRA to the MCHV gG protein. In some aspects, the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the individual has a zoonotic MCHV infection. In some aspects, the individual is a human.
- the invention provides a PILRA antagonist for use as a medicament, wherein the medicament is for treating an MCHV infection.
- the medicament is for treating a zoonotic MCHV infection.
- the PILRA antagonist results in a decrease in the binding of PILRA and the MCHV glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist.
- the PILRA antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the PILRA antagonist is a peptide.
- the PILRA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA.
- the antibody or antigen-binding fragment thereof binds PILRA. In some aspects, the antibody or antigen-binding fragment thereof inhibits the binding of PILRA to the MCHV gG protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides use of a PILRA antagonist in the manufacture of a medicament for treatment of a MCHV infection.
- the invention provides use of a PILRA antagonist in the manufacture of a medicament for treatment of a zoonotic MCHV infection.
- the invention provides use of a PILRA antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by MCHV.
- the PILRA antagonist results in a decrease in the binding of PILRA and the MCHV glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist.
- the PILRA antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the PILRA antagonist is a peptide.
- the PILRA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA.
- the antibody or antigen-binding fragment thereof binds PILRA. In some aspects, the antibody or antigen-binding fragment thereof inhibits the binding of PILRA to the MCHV gG protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides a method of treating an individual having a human cytomegalovirus (HCMV) infection comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist.
- HCMV human cytomegalovirus
- the invention provides a method of decreasing HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist.
- the VEGFR2 antagonist results in a decrease in the binding of VEGFR2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the MERTK antagonist results in a decrease in the binding of MERTK and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the PDGFRa antagonist results in a decrease in the binding of PDGFRa and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the KIRREL2 antagonist results in a decrease in the binding of KIRREL2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB5 antagonist results in a decrease in the binding of LILRB5 and the HCMV UL9 protein relative to binding of the two proteins in the absence of the antagonist;
- the ULBP1 antagonist results in a decrease in the binding of ULBP1 and the HC
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist reduces the extent and/or severity of HCMV infection of the individual relative to infection in the absence of the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist, respectively.
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a small molecule, an antibody or antigenbinding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- PRRG2 antagonist is a peptide.
- PRRG2 antagonist KLRAP1 antagonist, or SGCA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein and inhibits its binding to VEGFR2, MERTK, PDGFRa, and/or KIRREL2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL9 protein and inhibits its binding to LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , and/or KIR3DL1 ;
- the antibody or antigen-binding fragment thereof binds the HCMV UL142 protein and inhibits its binding to PRRG2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL144 protein and inhibits its binding to KLRAP1 ; or
- the antibody or antigen-binding fragment thereof binds the HCMV RL10 protein and inhibits its binding to SGCA.
- the antibody or antigen-binding fragment thereof binds VEGFR2, MERTK, PDGFRa, KIRREL2, LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , KIR3DL1 , PRRG2, KLRAP1 , or SGCA.
- the antibody or antigen-binding fragment thereof inhibits the binding of VEGFR2, MERTK, PDGFRa, or KIRREL2 to the HCMV UL6 protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , or KIR3DL1 to the HCMV UL9 protein; (c) the antibody or antigen-binding fragment thereof inhibits the binding of PRRG2 to the HCMV UL142 protein; (d) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HCMV UL144 protein; or (e) the antibody or antigen-binding fragment thereof inhibits the binding of SGCA to the HCMV RL10 protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the HCMV infection is congenital.
- the individual has CMV-related allograft rejection.
- the individual is a human.
- the invention provides a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist for use as a medicament.
- the invention provides a VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist for use as a medicament, wherein the medicament is for treating a HCMV infection.
- the invention provides a VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist for use as a medicament, wherein the medicament is for treating CMV-related allograft rejection.
- the VEGFR2 antagonist results in a decrease in the binding of VEGFR2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the MERTK antagonist results in a decrease in the binding of MERTK and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the PDGFRa antagonist results in a decrease in the binding of PDGFRa and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the KIRREL2 antagonist results in a decrease in the binding of KIRREL2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB5 antagonist results in a decrease in the binding of LILRB5 and the HCMV UL9 protein relative to binding of the two proteins in the absence of the antagonist;
- the ULBP1 antagonist results in a decrease in the binding of ULBP1 and the HC
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist reduces the extent and/or severity of HCMV infection of the individual relative to infection in the absence of the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist, respectively.
- the inhibitory nucleic acid is an ASO or a siRNA.
- PRRG2 antagonist is a peptide.
- PRRG2 antagonist KLRAP1 antagonist, or SGCA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein and inhibits its binding to VEGFR2, MERTK, PDGFRa, and/or KIRREL2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL9 protein and inhibits its binding to LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , and/or KIR3DL1 ;
- the antibody or antigen-binding fragment thereof binds the HCMV UL142 protein and inhibits its binding to PRRG2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL144 protein and inhibits its binding to KLRAP1 and/or BTLA; or
- the antibody or antigen-binding fragment thereof binds the HCMV RL10 protein and inhibits its binding to SGCA.
- the antibody or antigen-binding fragment thereof binds VEGFR2, MERTK, PDGFRa, KIRREL2, LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , KIR3DL1 , PRRG2, KLRAP1 , or SGCA.
- the antibody or antigen-binding fragment thereof inhibits the binding of VEGFR2, MERTK, PDGFRa, or KIRREL2 to the HCMV UL6 protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , or KIR3DL1 to the HCMV UL9 protein; (c) the antibody or antigen-binding fragment thereof inhibits the binding of PRRG2 to the HCMV UL142 protein; (d) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 or BTLA to the HCMV UL144 protein; or (e) the antibody or antigen-binding fragment thereof inhibits the binding of SGCA to the HCMV RL10 protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for treatment of an HCMV infection.
- the invention provides use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for treatment of CMV-related allograft rejection.
- the invention provides use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HCMV.
- the VEGFR2 antagonist results in a decrease in the binding of VEGFR2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the MERTK antagonist results in a decrease in the binding of MERTK and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the PDGFRa antagonist results in a decrease in the binding of PDGFRa and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the KIRREL2 antagonist results in a decrease in the binding of KIRREL2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB5 antagonist results in a decrease in the binding of LILRB5 and the HCMV UL9 protein relative to binding of the two proteins in the absence of the antagonist;
- the ULBP1 antagonist results in a decrease in the binding of ULBP1 and the HC
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a small molecule, an antibody or antigenbinding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- PRRG2 antagonist is a peptide.
- PRRG2 antagonist KLRAP1 antagonist, or SGCA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein and inhibits its binding to VEGFR2, MERTK, PDGFRa, and/or KIRREL2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL9 protein and inhibits its binding to LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , and/or KIR3DL1 ;
- the antibody or antigen-binding fragment thereof binds the HCMV UL142 protein and inhibits its binding to PRRG2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL144 protein and inhibits its binding to KLRAP1 and/or BTLA; or
- the antibody or antigen-binding fragment thereof binds the HCMV RL10 protein and inhibits its binding to SGCA.
- the antibody or antigen-binding fragment thereof binds VEGFR2, MERTK, PDGFRa, KIRREL2, LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , KIR3DL1 , PRRG2, KLRAP1 , or SGCA.
- the antibody or antigen-binding fragment thereof inhibits the binding of VEGFR2, MERTK, PDGFRa, or KIRREL2 to the HCMV UL6 protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , or KIR3DL1 to the HCMV UL9 protein; (c) the antibody or antigen-binding fragment thereof inhibits the binding of PRRG2 to the HCMV UL142 protein; (d) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 or BTLA to the HCMV UL144 protein; or (e) the antibody or antigen-binding fragment thereof inhibits the binding of SGCA to the HCMV RL10 protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides a method of treating an individual having a Varicella zoster virus (VZV) infection comprising administering to the individual an effective amount of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- VZV Varicella zoster virus
- the invention provides a method of decreasing VZV infection in an individual comprising administering to the individual an effective amount of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- the ICAM1 antagonist results in a decrease in the binding of ICAM1 and the VZV glycoprotein C (gC) protein relative to binding of the two proteins in the absence of the antagonist;
- the MUSK antagonist results in a decrease in the binding of MUSK and the VZV glycoprotein B (gB) protein relative to binding of the two proteins in the absence of the antagonist
- the HAVCR1 antagonist results in a decrease in the binding of HAVCR1 and the VZV gB protein relative to binding of the two proteins in the absence of the antagonist
- the MOG antagonist results in a decrease in the binding of MOG and the VZV glycoprotein I (gl) protein relative to binding of the two proteins in the absence of the antagonist
- the KIAA0319L antagonist results in a decrease in the binding of KIAA0319L and the VZV gl protein relative to binding of the two proteins in the absence of the antagonist.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist reduces the extent and/or severity of VZV infection of the individual relative to infection in the absence of the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist, respectively.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a peptide.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the VZV gC protein and inhibits its binding to ICAM1 ; (b) the antibody or antigen-binding fragment thereof binds the VZV gB protein and inhibits its binding to MUSK and/or HAVCR1 ; or (c) the antibody or antigen-binding fragment thereof binds the VZV gl protein and inhibits its binding to MOG and/or KIAA0319L.
- the antibody or antigen-binding fragment thereof binds ICAM1 , MUSK, HAVCR1 , MOG, or KIAA0319L.
- the antibody or antigen-binding fragment thereof inhibits the binding of ICAM1 to the VZV gC protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of MUSK or HAVCR1 to the VZV gB protein; or (c) the antibody or antigen-binding fragment thereof inhibits the binding of MOG or KIAA0319L to the VZV gl protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the individual has chicken pox or shingles.
- the individual is a human.
- the invention provides a MOG antagonist, a MUSK antagonist, or a KIAA0319L antagonist for use as a medicament.
- the invention provides a ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist for use as a medicament, wherein the medicament is for treating a VZV infection.
- the invention provides an ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist for use as a medicament, wherein the medicament is for treating chicken pox or shingles.
- the ICAM1 antagonist results in a decrease in the binding of ICAM1 and the VZV glycoprotein C (gC) protein relative to binding of the two proteins in the absence of the antagonist;
- the MUSK antagonist results in a decrease in the binding of MUSK and the VZV glycoprotein B (gB) protein relative to binding of the two proteins in the absence of the antagonist;
- the HAVCR1 antagonist results in a decrease in the binding of HAVCR1 and the VZV gB protein relative to binding of the two proteins in the absence of the antagonist;
- the MOG antagonist results in a decrease in the binding of MOG and the VZV glycoprotein I (gl) protein relative to binding of the two proteins in the absence of the antagonist; or
- the KIAA0319L antagonist results in a decrease in the binding of KIAA0319L and the VZV gl protein relative to binding of the two proteins in the absence of the antagonist.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a peptide.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the VZV gC protein and inhibits its binding to ICAM1 ; (b) the antibody or antigen-binding fragment thereof binds the VZV gB protein and inhibits its binding to MUSK and/or HAVCR1 ; or (c) the antibody or antigen-binding fragment thereof binds the VZV gl protein and inhibits its binding to MOG and/or KIAA0319L.
- the antibody or antigen-binding fragment thereof binds ICAM1 , MUSK,
- HAVCR1 HAVCR1 , MOG, or KIAA0319L.
- the antibody or antigen-binding fragment thereof inhibits the binding of ICAM1 to the VZV gC protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of MUSK or HAVCR1 to the VZV gB protein; or (c) the antibody or antigen-binding fragment thereof inhibits the binding of MOG or KIAA0319L to the VZV gl protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for treatment of a VZV infection.
- the invention provides use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for treatment of chicken pox or shingles.
- the invention provides use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by VZV.
- the ICAM1 antagonist results in a decrease in the binding of ICAM1 and the VZV glycoprotein C (gC) protein relative to binding of the two proteins in the absence of the antagonist;
- the MUSK antagonist results in a decrease in the binding of MUSK and the VZV glycoprotein B (gB) protein relative to binding of the two proteins in the absence of the antagonist;
- the HAVCR1 antagonist results in a decrease in the binding of HAVCR1 and the VZV gB protein relative to binding of the two proteins in the absence of the antagonist;
- the MOG antagonist results in a decrease in the binding of MOG and the VZV glycoprotein I (gl) protein relative to binding of the two proteins in the absence of the antagonist; or
- the KIAA0319L antagonist results in a decrease in the binding of KIAA0319L and the VZV gl protein relative to binding of the two proteins in the absence of the antagonist.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a peptide.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the VZV gC protein and inhibits its binding to ICAM1 ; (b) the antibody or antigen-binding fragment thereof binds the VZV gB protein and inhibits its binding to MUSK and/or HAVCR1 ; or (c) the antibody or antigen-binding fragment thereof binds the VZV gl protein and inhibits its binding to MOG and/or KIAA0319L.
- the antibody or antigen-binding fragment thereof binds ICAM1 , MUSK, HAVCR1 , MOG, or KIAA0319L.
- the antibody or antigen-binding fragment thereof inhibits the binding of ICAM1 to the VZV gC protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of MUSK or HAVCR1 to the VZV gB protein; or (c) the antibody or antigen-binding fragment thereof inhibits the binding of MOG or KIAA0319L to the VZV gl protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides a method of treating an individual having a human herpesvirus 8 (HHV8) infection comprising administering to the individual an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- HHV8 human herpesvirus 8
- the invention provides a method of decreasing HHV8 infection in an individual comprising administering to the individual an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- the KLRAP1 antagonist results in a decrease in the binding of KLRAP1 and the HHV8 K14 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB1 antagonist results in a decrease in the binding of LILRB1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the CLEC4G antagonist results in a decrease in the binding of CLEC4G and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT1 antagonist results in a decrease in the binding of FLRT1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT2 antagonist results in a decrease in the binding of FLRT2 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist; or
- the FLRT3 antagonist results in a decrease in the binding of FLRT3 and the HHV8 KCP protein
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist reduces the extent and/or severity of HHV8 infection of the individual relative to infection in the absence of the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist, respectively.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a peptide.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HHV8 K14 protein and inhibits its binding to KLRAP1 ; or (b) the antibody or antigen-binding fragment thereof binds the HHV8 KCP protein and inhibits its binding to LILRB1 , CLEC4G, FLRT1 , FLRT2, and/or FLRT3.
- the antibody or antigen-binding fragment thereof binds KLRAP1 , LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3.
- the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HHV8 K14 protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3 to the HHV8 KCP protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the individual has Kaposi’s sarcoma, primary effusion lymphoma, HHV8- associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome.
- the individual is a human.
- the invention provides a KLRAP1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist for use as a medicament.
- the invention provides a KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist for use as a medicament, wherein the medicament is for treating an HHV8 infection.
- the invention provides a KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist for use as a medicament, wherein the medicament is for treating Kaposi’s sarcoma, primary effusion lymphoma, HHV8-associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome.
- the KLRAP1 antagonist results in a decrease in the binding of KLRAP1 and the HHV8 K14 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB1 antagonist results in a decrease in the binding of LILRB1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the CLEC4G antagonist results in a decrease in the binding of CLEC4G and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT1 antagonist results in a decrease in the binding of FLRT1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT2 antagonist results in a decrease in the binding of FLRT2 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist; or
- the FLRT3 antagonist results in a decrease in the binding of FLRT3 and the HHV8 KCP protein
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a peptide.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HHV8 K14 protein and inhibits its binding to KLRAP1 ; or (b) the antibody or antigen-binding fragment thereof binds the HHV8 KCP protein and inhibits its binding to LILRB1 , CLEC4G, FLRT1 , FLRT2, and/or FLRT3.
- the antibody or antigen-binding fragment thereof binds KLRAP1 , LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3. In some aspects, (a) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HHV8 K14 protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3 to the HHV8 KCP protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the invention provides use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for treatment of an HHV8 infection.
- the invention provides use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for treatment of Kaposi’s sarcoma, primary effusion lymphoma, HHV8-associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome.
- the invention provides use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HHV8.
- the KLRAP1 antagonist results in a decrease in the binding of KLRAP1 and the HHV8 K14 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB1 antagonist results in a decrease in the binding of LILRB1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the CLEC4G antagonist results in a decrease in the binding of CLEC4G and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT1 antagonist results in a decrease in the binding of FLRT1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT2 antagonist results in a decrease in the binding of FLRT2 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist; or
- the FLRT3 antagonist results in a decrease in the binding of FLRT3 and the HHV8 KCP protein
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an ASO or a siRNA.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a peptide.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HHV8 K14 protein and inhibits its binding to KLRAP1 ; or (b) the antibody or antigen-binding fragment thereof binds the HHV8 KCP protein and inhibits its binding to LILRB1 , CLEC4G, FLRT1 , FLRT2, and/or FLRT3.
- the antibody or antigen-binding fragment thereof binds KLRAP1 , LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3. In some aspects, (a) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HHV8 K14 protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3 to the HHV8 KCP protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the disclosure features a method of identifying a modulator of the interaction between the HCMV UL6 protein and MERTK or VEGFR2, the method comprising (a) providing a candidate modulator; (b) contacting the HCMV UL6 protein with MERTK or VEGFR2 in the presence or absence of the candidate modulator under conditions permitting the binding of the HCMV UL6 protein to MERTK or VEGFR2; and (c) measuring the binding of the HCMV UL6 protein to MERTK or VEGFR2, wherein an increase or decrease in binding in the presence of the candidate modulator relative to binding in the absence of the candidate modulator identifies the candidate modulator as a modulator of the interaction between the HCMV UL6 protein and MERTK or VEGFR2.
- the disclosure features a method of identifying a modulator of a downstream activity of the HCMV UL6 protein, the method comprising (a) providing a candidate modulator; (b) contacting the HCMV UL6 protein with MERTK or VEGFR2 in the presence or absence of the candidate modulator under conditions permitting the binding of the HCMV UL6 protein to MERTK or VEGFR2; and (c) measuring a downstream activity of the HCMV UL6 protein, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the HCMV UL6 protein.
- the disclosure features a method of identifying a modulator of a downstream activity of MERTK or VEGFR2, the method comprising (a) providing a candidate modulator; (b) contacting MERTK or VEGFR2 with the HCMV UL6 protein in the presence or absence of the candidate modulator under conditions permitting the binding of MERTK or VEGFR2 to the HCMV UL6 protein; and (c) measuring a downstream activity of MERTK or VEGFR2, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of MERTK or VEGFR2.
- the increase or decrease in binding is at least 70%, as measured by a surface plasmon resonance (SPR) assay, a BLI assay, or an enzyme-linked immunosorbent assay (ELISA).
- SPR surface plasmon resonance
- BLI BLI
- ELISA enzyme-linked immunosorbent assay
- the modulator is an inhibitor of the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2.
- the modulator is an activator of the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2.
- the change in the downstream activity is a decrease in the amount, strength, or duration of the downstream activity.
- the change in the downstream activity is an increase in the amount, strength, or duration of the downstream activity.
- the downstream activity is infection of a cell by HCMV. In some aspects, infection is decreased in the presence of the modulator. In some aspects, infection is decreased by at least 40%, as measured in a viral infection assay or a viral entry assay.
- downstream activity is angiogenesis.
- angiogenesis is decreased by at least 40%, as measured in a tube formation assay.
- the modulator is an inhibitor of a downstream activity of the HCMV UL6 protein or MERTK, and the downstream activity is phosphorylation of MERTK. In some aspects, phosphorylation of MERTK is decreased by at least 40%, as measured using a Western blot or ELISA.
- the modulator is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, an antisense oligonucleotide, or a small interfering RNA (siRNA).
- siRNA small interfering RNA
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an ScFab, a VH domain, or a VHH domain.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein.
- the antibody or antigen-binding fragment thereof binds MERTK or VEGFR2.
- FIG. 1 is a plot showing the results of a screen for interaction between the HCMV protein UL6 (as a pentamerized query protein) and the STM receptor library.
- FIG. 2 is a plot showing the results of a screen for interaction between the HCMV protein UL9 (as a pentamerized query protein) and the STM receptor library.
- FIG. 3 is a plot showing the results of a screen for interaction between the human herpesvirus 8 (HHV8; also called Kaposi’s sarcoma herpesvirus (KSHV)) protein KCP (as a pentamerized query protein) and the STM receptor library.
- HHV8 human herpesvirus 8
- KSHV Kaposi’s sarcoma herpesvirus
- FIG. 4 is a plot showing the results of a screen for interaction between the Herpes simplex virus 2 (HSV-2) glycoprotein G (gG) (as a pentamerized query protein) and the STM receptor library.
- HSV-2 Herpes simplex virus 2
- gG glycoprotein G
- FIG. 5 is a plot showing the results of a screen for interaction between the Varicella zoster virus (VZV) glycoprotein B (gB) (as a pentamerized query protein) and the STM receptor library.
- VZV Varicella zoster virus glycoprotein B glycoprotein B
- FIG. 6 is a plot showing the results of a screen for interaction between the VZV glycoprotein C (gC) (as a pentamerized query protein) and the STM receptor library.
- gC VZV glycoprotein C
- FIG. 7 is a plot showing the results of a screen for interaction between the HSV-2 glycoprotein D (gD) (as a pentamerized query protein) and the STM receptor library.
- gD HSV-2 glycoprotein D
- FIG. 8 is a plot showing the results of a screen for interaction between the macacine alphaherpesvirus (MCHV) glycoprotein G (gG) (as a pentamerized query protein) and the STM receptor library.
- MCHV macacine alphaherpesvirus
- gG glycoprotein G
- FIG. 9 is a plot showing the results of a screen for interaction between the VZV glycoprotein I (gl) (as a pentamerized query protein) and the STM receptor library.
- FIG. 10 is a plot showing the results of a screen for interaction between the HCMV protein RL10 (as a pentamerized query protein) and the STM receptor library.
- FIG. 11 is a plot showing the results of a screen for interaction between the HCMV protein UL142 (as a pentamerized query protein) and the STM receptor library.
- FIG. 12 is a plot showing the results of a screen for interaction between the HCMV protein UL144 (as a pentamerized query protein) and the STM receptor library.
- FIG. 13 is a plot showing the results of a screen for interaction between the HHV8 protein K14 (as a pentamerized query protein) and the STM receptor library.
- FIG. 14A is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the VZV protein gC (expressed as a gD-GPI construct) and ICAM1 (expressed as a tetramer).
- FIG. 14B is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the VZV protein gC (captured on beads or assayed directly in supernatants (sups)) and ICAM1 (expressed as a gD-GPI construct or a full-length protein).
- FIG. 15 is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the VZV protein gB (captured on beads or assayed directly in supernatants) and MUSK (expressed as a gD-GPI construct or a full-length protein).
- FIG. 16 is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the VZV protein gB (captured on beads or assayed directly in supernatants) and HAVCR1 (expressed as a gD-GPI construct or a full-length protein).
- FIG. 17 is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the HHV8 protein KCP (expressed as a gD-GPI construct or a full-length protein) and LILRB1 , FLRT1 , FLRT2, and FLRT3 (in supernatants).
- FIG. 18 is a pair of micrographs showing Cos7 cell-based immunofluorescence validation of the interaction between the HCMV protein UL6 and PDGFRA (expressed as an Fc fusion protein.
- FIG. 19 is a pair of micrographs showing Cos7 cell-based immunofluorescence validation of the interaction between the HCMV protein UL6 and MERTK.
- FIG. 20 is a pair of micrographs showing Cos7 cell-based immunofluorescence validation of the interaction between the HSV-2 protein gG and UNC5D-Fc.
- FIG. 21 is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the HCMV protein UL9 (expressed as a gD-GPI construct or a full-length protein) and the indicated proteins.
- FIG. 22 is a set of micrographs showing cell-based immunofluorescence validation of the interaction between the VZV protein gC and ICAM1 (expressed as a gD-GPI construct or a full-length protein).
- FIG. 23 is a scatter plot showing the results of an Extracellular Protein Microarray technology screen for proteins that interact with the hCMV protein UL6.
- the human receptors VEGFR2 (KDR) and MERTK (MER) were detected as high scoring hits.
- the HCMV UL6 ectodomain was expressed as a recombinant Fc-tagged protein and was screened against two libraries consisting of ⁇ 1 ,500 human proteins.
- Scatter plot represents two replicate microarray data sets (array 1 , array 2), where dots represent average scores for binding of HCMV UL6 to each human protein in the library.
- the lower left square represents an empirically set cut off of ⁇ 4 and contains all proteins from the library that were not detected as “hits” for UL6.
- Dark gray dots represent two different preparations of MERTK present in the library that were detected as high-scoring hits for UL6.
- Light gray dots represent two different preparations of VEGFR2 present in the library that were detected as high-scoring hits
- FIG. 24A is a surface plasmon resonance (SPR) plot showing binding of MERTK (expressed as a His-tagged ectodomain) to recombinant UL6 (expressed as a Fc-fused ectodomain: UL6-Fc).
- UL6-Fc was immobilized on a sensor chip. Binding to MERTK, used as soluble analyte, was assessed by SPR. MERTK binding was tested at 0, 10, 50, 100 and 200 nanomolar (nM) concentration, respectively (bottom to top).
- FIG. 24B is a SPR plot showing binding of VEGFR2 (expressed as a monomeric ectodomain) to UL6-FC. Recombinant VEGFR2 was immobilized on sensor chips. Binding to UL6-Fc, used as soluble analyte, was tested by surface plasmon resonance. UL6 binding was tested at 10, 20, 50, 100 and 200 nM concentration (bottom to top).
- FIG. 25 is a SPR plot showing binding of UL6-Fc (provided at 5 nM, 10 nM, or 100 nM), Gas6 (hGas6 His R&D; provided at 100 nM), or a control Fc-tagged protein (Control viral prot-Fc; provided at 100 nM) to MERTK-Fc (hMER-Fc R&D).
- Recombinant MERTK expressed as a recombinant ectodomain fused to a Fc tag, was immobilized on GLC sensor chips using standard amino coupling chemistry.
- UL6- Fc, Gas6, and a control viral protein (ectodomain-Fc) were tested for binding as soluble analytes, injected at the indicated concentrations
- FIG. 26 is a set of SPR plots showing binding of UL6-Fc (provided at 5 nM, 10 nM, or 100 nM), Gas6 (hGas6 His R&D; provided at 100 nM), or a control Fc-tagged protein (Control viral prot-Fc; provided at 100 nM) to mouse MERTK-Fc (MER-Fc) (left panel), human MERTK-Fc (center panel), or a control viral protein ectodomain (control-Fc).
- MERTK or a control Fc protein were immobilized on GLC sensor chips using standard amino coupling chemistry.
- UL6-Fc, Gas6, and the control viral protein were tested for binding as soluble analytes, injected at the indicated concentrations.
- FIG. 27A is a set of flow cytometry histograms showing expression of the receptor MERTK (MER) on the surface of human umbilical vein endothelial cells (HUVECs). Left histogram: background signal (unlabeled cells). Dashed line histogram: isotype control staining. Right histogram: expression of MERTK on the cell surface, as measured using a commercial anti-MERTK antibody ((Cat No. #AF891 , R&D).
- MERTK receptor MERTK
- FIG. 27B is a set of flow cytometry histograms showing binding of recombinant UL6-Fc to the surface of HUVECs.
- UL6 was incubated with the cells at 4°C at the concentrations indicated, and binding was measured using a fluorophore-conjugated anti-tag (anti-Fc) antibody.
- Left solid histogram background signal (unlabeled cells).
- Dashed line histogram binding of a Fc-tagged control protein (provided at 200 nM).
- Right histograms binding of UL6-Fc provided at 10 nM, 100 nM, or 200 nM to cells.
- FIG. 28 is a photomicrograph of a Western blot showing the levels of phosphoMER (pMer), phosphoAKT (pAKT 473 ), phosphoERK42/44 (pERK42/44), phosphoMEK (pMEK), and actin in HUVECs stimulated with an Fc control protein at 100 nM, VEGFA at 20 ng/mL, UL6-Fc at 10 nM, UL6-Fc at 100 nM, or Gas6 at 400 nM or mock-stimulated cells.
- IB immunoblotting.
- FIG. 29A is a schematic diagram showing the design of a tube formation assay used to evaluate angiogenesis in vivo. Endothelial cells are grown in 3D matrices (fibrin gel), and their ability to form capillary-like structures (or tubules) is assessed. Beads comprising HUVECs are provided.
- FIG. 29B is a set of photomicrographs showing representative images from HUVEC tube formation assays performed as shown in Fig. 29A. Assays were performed in the presence of UL6-Fc, VEGFA (used as a positive control for tube formation), or a control Fc-tagged protein.
- FIG. 30 is a schematic diagram showing the design of a biolayer interferometry (BLI) assay for competition of UL6 and Gas6 for binding to MERTK and a graph showing the results of the assay.
- BLI biolayer interferometry
- FIG. 31 is a set of photomicrographs showing representative images from HUVEC tube formation assays performed as shown in Fig. 29A.
- Cells were treated with MERTK (MER) siRNA or a control siRNA. Non-treated cells are shown as a control.
- Assays were performed in the presence of UL6-Fc, VEGFA (used as a positive control for tube formation), or a control Fc-tagged protein.
- an isolated peptide means one or more isolated peptides.
- patient herein refers to a human patient.
- an “effective amount” refers to an amount of an agent (e.g., a therapeutic agent) that is effective to bring about a therapeutic/prophylactic benefit (e.g., as described herein) that is not outweighed by unwanted/undesirable side effects.
- pharmaceutical formulation refers to a preparation which is in such form as to permit the biological activity of the active ingredient or ingredients to be effective, and which contains no additional components which are unacceptably toxic to a subject to which the formulation would be administered. Such formulations are sterile.
- the formulation is for intravenous (iv) administration.
- the formulation is for subcutaneous (sc) administration.
- protein refers to any native protein from any vertebrate source, including mammals such as primates (e.g., humans) and rodents (e.g., mice and rats), unless otherwise indicated.
- the term encompasses “full-length,” unprocessed protein any form of the protein that results from processing in the cell.
- the term also encompasses naturally occurring variants of the protein, e.g., splice variants or allelic variants, e.g., amino acid substitution mutations or amino acid deletion mutations.
- the term also includes isolated regions or domains of the protein, e.g., the extracellular domain (ECD).
- ECD extracellular domain
- an “isolated” protein or peptide is one which has been separated from a component of its natural environment.
- a protein or peptide is purified to greater than 95% or 99% purity as determined by, for example, electrophoresis (e.g., SDS-PAGE, isoelectric focusing (IEF), capillary electrophoresis) or chromatography (e.g., ion exchange or reverse phase HPLC).
- electrophoresis e.g., SDS-PAGE, isoelectric focusing (IEF), capillary electrophoresis
- chromatography e.g., ion exchange or reverse phase HPLC.
- nucleic acid refers to a nucleic acid molecule that has been separated from a component of its natural environment.
- An isolated nucleic acid includes a nucleic acid molecule contained in cells that ordinarily contain the nucleic acid molecule, but the nucleic acid molecule is present extrachromosomally or at a chromosomal location that is different from its natural chromosomal location.
- single transmembrane receptor refers to a protein having a single transmembrane domain. In some aspects, the STM receptor is expressed on the cell surface. Exemplary STM receptors are provided in Martinez- Martin et al., Cell, 174(5): 1158-1171 , 2018 and Clark et al., Genome Res, 13: 2265-2270, 2003.
- the STM protein has the UniProt annotation “leucine-rich,” “cysteine-rich,” “ITIM/ITAM” (immunoreceptor tyrosine-based inhibition motif/immu noreceptor tyrosine-based activation motif), “TNFR” (tumor necrosis factor receptor), “TLR/ILR” (Toll-like receptor/interleukin receptor), “semaphorin,” “Kinaselike,” “Ig-like” (immunoglobulin-like), “fibronectin,” “ephrin,” “EGF,” “cytokineR,” or “cadherin.”
- STM receptors may be identified based on, e.g., the presence of a signal peptide or a predicted transmembrane region in the amino acid sequence. In some aspects, the STM receptor is expressed as an extracellular domain.
- extracellular domain refers to a protein domain that is predicted to be localized outside of the outer plasma membrane of the cell.
- the ECD is an ECD of a receptor, e.g., a STM receptor.
- the ECD is an ECD of a herpesvirus protein.
- the boundaries of the extracellular domain may be identified by prediction of domains that indicate that the protein crosses the plasma membrane, e.g., a transmembrane domain (e.g., a transmembrane helix).
- the presence of an extracellular domain may be predicted by the presence of a domain, sequence, or motif that indicates that the protein is trafficked to the plasma membrane, e.g., a signal sequence or a glycosylphosphatidylinositol (GPI) linkage site.
- the boundaries of the ECD are determined according to UniProt annotations.
- the ECD is soluble.
- the extracellular domain is expressed in the context of a full-length protein.
- the extracellular domain is expressed as an isolated extracellular domain, e.g., a sequence of amino acid residues comprising only the amino acid residues of a protein that are predicted to be extracellular.
- extracellular domain refers to a protein domain that is predicted to be localized outside of the outer plasma membrane of the cell.
- the ECD is an ECD of a receptor, e.g., a STM receptor.
- the ECD is an ECD of a herpesvirus protein.
- the boundaries of the extracellular domain may be identified by prediction of domains that indicate that the protein crosses the plasma membrane, e.g., a transmembrane domain (e.g., a transmembrane helix).
- the presence of an extracellular domain may be predicted by the presence of a domain, sequence, or motif that indicates that the protein is trafficked to the plasma membrane, e.g., a signal sequence or a glycosylphosphatidylinositol (GPI) linkage site.
- the boundaries of the ECD are determined according to UniProt annotations.
- the ECD is soluble.
- the extracellular domain is expressed in the context of a full-length protein.
- the extracellular domain is expressed as an isolated extracellular domain, e.g., a sequence of amino acid residues comprising only the amino acid residues of a protein that are predicted to be extracellular.
- the isolated ECD is included in a fusion protein.
- inclusion in a fusion protein increases solubility, ease of expression, ease of capture (e.g., on a protein A-coated plate), multimerization, or some other desirable property of the ECD.
- the ECD or ECD fusion protein is a monomer.
- the ECD or ECD fusion protein is a multimer, e.g., a tetramer or a pentamer.
- the ECD is fused to a human IgG.
- the ECD is fused to a human Fc tag.
- the ECD is fused to an Avidity AVITAGTM (Avi tag).
- the ECD is fused to a polyhistidine (His) tag.
- the ECD is fused to a glycoprotein D (gD) tag and a glycosylphosphatidylinositol (GPI) linker, e.g., a gD-GPI tag.
- the ECD is fused to the pentamerization domain of rat cartilaginous oligomeric matrix protein (COMP) and the b-lactamase protein, e.g., as described in Bushell et al., Genome Res, 18: 622-630, 2008.
- the ECD fusion protein further includes a cleavage sequence, e.g., a TEV cleavage sequence, to allow removal of one or more domains.
- a cleavage sequence e.g., a TEV cleavage sequence
- an ECD fusion protein having an Avi tag and an Fc tag cleavable at a cleavage sequence is further processed to remove the Fc tag, to biotinylate the Avi tag, and to fuse the biotinylated ECD fusion protein to a fluorescent streptavidin (SA), e.g., to form a tetramerized ECD fusion protein.
- SA fluorescent streptavidin
- the isolated ECD or ECD fusion protein is purified.
- a “modulator” is an agent that modulates (e.g., increases, decreases, activates, or inhibits) a given biological activity, e.g., an interaction or a downstream activity resulting from an interaction.
- a modulator or candidate modulator may be, e.g., a small molecule, an antibody, an antigenbinding fragment (e.g., a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an ScFab, a VH domain, or a VHH domain), a peptide, a mimic, an antisense oligonucleotide, or an inhibitory nucleic acid (e.g., an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA)).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- increase or activate is meant the ability to cause an overall increase, for example, of 20% or greater, of 50% or greater, or of 75%, 85%, 90%, or 95% or greater.
- increase or activate can refer to a downstream activity of a protein-protein interaction.
- reduce or “inhibit” is meant the ability to cause an overall decrease, for example, of 20% or greater, of 50% or greater, or of 75%, 85%, 90%, or 95% or greater.
- reduce or inhibit can refer to a downstream activity of a protein-protein interaction.
- Binding affinity refers to the strength of the sum total of noncovalent interactions between a single binding site of a molecule (e.g., a receptor) and its binding partner (e.g., a ligand). Unless indicated otherwise, as used herein, “binding affinity” refers to intrinsic binding affinity, which reflects a 1 :1 interaction between members of a binding pair (e.g., receptor and ligand). The affinity of a molecule X for its partner Y can generally be represented by the dissociation constant (KD). Affinity can be measured by common methods known in the art, including those described herein.
- “Complex” or “complexed” as used herein refers to the association of two or more molecules that interact with each other through bonds and/or forces (e.g., Van der Waals, hydrophobic, hydrophilic forces) that are not peptide bonds.
- a complex is heteromultimeric.
- protein complex or “polypeptide complex” as used herein includes complexes that have a non-protein entity conjugated to a protein in the protein complex (e.g., including, but not limited to, chemical molecules such as a toxin or a detection agent).
- host cell refers to cells into which exogenous nucleic acid has been introduced, including the progeny of such cells.
- Host cells include “transfected cells,” “transformed cells,” and “transformants,” which include the primary transformed cell and progeny derived therefrom without regard to the number of passages. Progeny may not be completely identical in nucleic acid content to a parent cell, but may contain mutations. Mutant progeny that have the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
- the host cell is stably transformed with the exogenous nucleic acid. In other aspects, the host cell is transiently transformed with the exogenous nucleic acid.
- HSV-2 gD Herpes simplex virus 2 (HSV-2) glycoprotein D (gD),” “HSV-2 gD,” and variants thereof, as used herein, refer to a native gD protein from a HSV-2 virus.
- the term encompasses full- length gD and isolated regions or domains of gD, e.g., the gD ECD.
- the term also encompasses naturally occurring variants of gD, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HSV-2 gD is shown in SEQ ID NO: 1 . Minor sequence variations, especially conservative amino acid substitutions of gD that do not affect gD function and/or activity, are also contemplated by the invention.
- HSV-2 gG herpes simplex virus 2 (HSV-2) glycoprotein G (gG),” “HSV-2 gG,” and variants thereof, as used herein, refer to a native gG protein from a HSV-2 virus.
- the term encompasses full- length gG and isolated regions or domains of gG, e.g., the gG ECD.
- the term also encompasses naturally occurring variants of gG, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HSV-2 gG is shown in SEQ ID NO: 2. Minor sequence variations, especially conservative amino acid substitutions of gG that do not affect gG function and/or activity, are also contemplated by the invention.
- the term encompasses full- length gG and isolated regions or domains of gG, e.g., the gG ECD.
- the term also encompasses naturally occurring variants of gG, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary MCHV gG is shown in SEQ ID NO: 3. Minor sequence variations, especially conservative amino acid substitutions of gG that do not affect gG function and/or activity, are also contemplated by the invention.
- HCMV human cytomegalovirus
- HCMV UL6 human cytomegalovirus
- HCMV UL6 human cytomegalovirus UL6 protein
- variants thereof as used herein, refer to a native UL6 protein from a HCMV virus.
- the term encompasses full-length UL6 and isolated regions or domains of UL6, e.g., the UL6 ECD.
- the term also encompasses naturally occurring variants of UL6, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HCMV UL6 is shown in SEQ ID NO: 4. Minor sequence variations, especially conservative amino acid substitutions of UL6 that do not affect UL6 function and/or activity, are also contemplated by the invention.
- HCMV human cytomegalovirus
- HCMV UL9 human cytomegalovirus UL9 protein
- HCMV UL9 human cytomegalovirus UL9 protein
- variants thereof as used herein, refer to a native UL9 protein from a HCMV virus.
- the term encompasses full-length UL9 and isolated regions or domains of UL9, e.g., the UL9 ECD.
- the term also encompasses naturally occurring variants of UL9, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HCMV UL9 is shown in SEQ ID NO: 5. Minor sequence variations, especially conservative amino acid substitutions of UL9 that do not affect UL9 function and/or activity, are also contemplated by the invention.
- HCMV human cytomegalovirus
- HCMV UL142 human cytomegalovirus
- HCMV UL142 human cytomegalovirus UL142 protein
- variants thereof as used herein, refer to a native UL142 protein from a HCMV virus.
- the term encompasses full- length UL142 and isolated regions or domains of UL142, e.g., the UL142 ECD.
- the term also encompasses naturally occurring variants of UL142, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HCMV UL142 is shown in SEQ ID NO: 6. Minor sequence variations, especially conservative amino acid substitutions of UL142 that do not affect UL142 function and/or activity, are also contemplated by the invention.
- HCMV human cytomegalovirus
- HCMV UL144 HCMV UL144 protein
- HCMV UL144 HCMV UL144 protein
- variants thereof refer to a native UL144 protein from a HCMV virus.
- the term encompasses full- length UL144 and isolated regions or domains of UL144, e.g., the UL144 ECD.
- the term also encompasses naturally occurring variants of UL144, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HCMV UL144 is shown in SEQ ID NO: 7. Minor sequence variations, especially conservative amino acid substitutions of UL144 that do not affect UL144 function and/or activity, are also contemplated by the invention.
- HCMV RL10 protein refers to a native RL10 protein from a HCMV virus.
- the term encompasses full-length RL10 and isolated regions or domains of RL10, e.g., the RL10 ECD.
- the term also encompasses naturally occurring variants of RL10, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HCMV RL10 is shown in SEQ ID NO: 8. Minor sequence variations, especially conservative amino acid substitutions of RL10 that do not affect RL10 function and/or activity, are also contemplated by the invention.
- VZV glycoprotein C refers to a native gC protein from a VZV virus.
- the term encompasses full-length gC and isolated regions or domains of gC, e.g., the gC ECD.
- the term also encompasses naturally occurring variants of gC, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary VZV gC is shown in SEQ ID NO: 9. Minor sequence variations, especially conservative amino acid substitutions of gC that do not affect gC function and/or activity, are also contemplated by the invention.
- VZV glycoprotein B refers to a native gB protein from a VZV virus.
- the term encompasses full-length gB and isolated regions or domains of gB, e.g., the gB ECD.
- the term also encompasses naturally occurring variants of gB, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary VZV gB is shown in SEQ ID NO: 10. Minor sequence variations, especially conservative amino acid substitutions of gB that do not affect gB function and/or activity, are also contemplated by the invention.
- VZV glycoprotein I VZV glycoprotein I
- VZV gl VZV glycoprotein I
- VZV gl VZV glycoprotein I
- the term encompasses full-length gl and isolated regions or domains of gl, e.g., the gl ECD.
- the term also encompasses naturally occurring variants of gl, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary VZV gl is shown in SEQ ID NO: 11. Minor sequence variations, especially conservative amino acid substitutions of gl that do not affect gl function and/or activity, are also contemplated by the invention.
- human herpesvirus 8 (HHV8) K14 refers to a native K14 protein from a HHV8 virus.
- the term encompasses full-length K14 and isolated regions or domains of K14, e.g., the K14 ECD.
- the term also encompasses naturally occurring variants of K14, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HHV8 K14 is shown in SEQ ID NO: 12. Minor sequence variations, especially conservative amino acid substitutions of K14 that do not affect K14 function and/or activity, are also contemplated by the invention.
- human herpesvirus 8 (HHV8) KCP refers to a native KCP protein from a HHV8 virus.
- the term encompasses full-length KCP and isolated regions or domains of KCP, e.g., the KCP ECD.
- the term also encompasses naturally occurring variants of KCP, e.g., splice variants or allelic variants.
- the amino acid sequence of an exemplary HHV8 KCP is shown in SEQ ID NO: 13. Minor sequence variations, especially conservative amino acid substitutions of KCP that do not affect KCP function and/or activity, are also contemplated by the invention.
- Antagonist refers to a molecule that decreases signal transduction resulting from the interaction of the protein with one or more of its binding partners.
- the antagonist may result in a decrease in the binding of the protein to one or more of its binding partners relative to binding of the two proteins in the absence of the antagonist.
- Antagonists may include antibodies, antigen binding fragments thereof, immunoadhesins, fusion proteins, peptides (e.g., multimerized peptides), oligopeptides, inhibitory nucleic acids (e.g., ASOs orsiRNAs), and other molecules that decrease signal transduction resulting from the interaction of the protein with one or more of its binding partners.
- vector refers to a nucleic acid molecule capable of propagating another nucleic acid to which it is linked.
- the term includes the vector as a self-replicating nucleic acid structure as well as the vector incorporated into the genome of a host cell into which it has been introduced. Certain vectors are capable of directing the expression of nucleic acids to which they are operatively linked.
- antibody herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and antibody fragments (e.g., bis-Fabs) so long as they exhibit the desired antigen-binding activity.
- an “antigen-binding fragment” or “antibody fragment” refers to a molecule other than an intact antibody that comprises a portion of an intact antibody that binds the antigen to which the intact antibody binds.
- antigen-binding fragments include but are not limited to bis-Fabs; Fv; Fab; Fab, Fab’- SH; F(ab’)2; diabodies; linear antibodies; single-chain antibody molecules (e.g., scFv, scFab); and multispecific antibodies formed from antibody fragments.
- a “single-domain antibody” refers to an antibody fragment comprising all or a portion of the heavy chain variable domain or all or a portion of the light chain variable domain of an antibody.
- a single-domain antibody is a human single-domain antibody (see, e.g., U.S. Patent No. 6,248,516 B1). Examples of single-domain antibodies include but are not limited to a VHH.
- a “Fab” fragment is an antigen-binding fragment generated by papain digestion of antibodies and consists of an entire L chain along with the variable region domain of the H chain (VH), and the first constant domain of one heavy chain (CH1). Papain digestion of antibodies produces two identical Fab fragments. Pepsin treatment of an antibody yields a single large F(ab’)2 fragment which roughly corresponds to two disulfide linked Fab fragments having divalent antigen-binding activity and is still capable of cross-linking antigen.
- Fab’ fragments differ from Fab fragments by having an additional few residues at the carboxy terminus of the CH1 domain including one or more cysteines from the antibody hinge region.
- Fab’-SH is the designation herein for Fab’ in which the cysteine residue(s) of the constant domains bear a free thiol group.
- F(ab’)2 antibody fragments originally were produced as pairs of Fab’ fragments which have hinge cysteines between them. Other chemical couplings of antibody fragments are also known.
- Fc region herein is used to define a C-terminal region of an immunoglobulin heavy chain, including native sequence Fc regions and variant Fc regions.
- the human IgG heavy chain Fc region is usually defined to stretch from an amino acid residue at position Cys226, or from Pro230, to the carboxyl- terminus thereof.
- the C-terminal lysine (residue 447 according to the EU numbering system) of the Fc region may be removed, for example, during production or purification of the antibody, or by recombinantly engineering the nucleic acid encoding a heavy chain of the antibody. Accordingly, a composition of intact antibodies may comprise antibody populations with all Lys447 residues removed, antibody populations with no Lys447 residues removed, and antibody populations having a mixture of antibodies with and without the Lys447 residue.
- Fv consists of a dimer of one heavy- and one light-chain variable region domain in tight, non- covalent association. From the folding of these two domains emanate six hypervariable loops (3 loops each from the H and L chain) that contribute the amino acid residues for antigen binding and confer antigen binding specificity to the antibody. However, even a single variable domain (or half of an Fv comprising only three CDRs specific for an antigen) has the ability to recognize and bind antigen, although often at a lower affinity than the entire binding site.
- full-length antibody “intact antibody,” and “whole antibody” are used herein interchangeably to refer to an antibody having a structure substantially similar to a native antibody structure or having heavy chains that contain an Fc region as defined herein.
- Single-chain Fv also abbreviated as “sFv” or “scFv” are antibody fragments that comprise the VH and VL antibody domains connected into a single polypeptide chain.
- the scFv polypeptide further comprises a polypeptide linker between the VH and VL domains, which enables the scFvto form the desired structure for antigen binding.
- scFv see Pluckthun, The Pharmacology of Monoclonal Antibodies, vol. 113, Rosenburg and Moore eds., Springer-Verlag, New York, pp. 269-315 (1994); Malmborg et al., J. Immunol. Methods 183:7-13, 1995.
- small molecule refers to any molecule with a molecular weight of about 2000 daltons or less, e.g., about 1000 daltons or less. In some aspects, the small molecule is a small organic molecule.
- the term “mimic” or “molecular mimic,” as used herein, refers to a polypeptide having sufficient similarity in conformation and/or binding ability (e.g., secondary structure, tertiary structure) to a given polypeptide or to a portion of said polypeptide to bind to a binding partner of said polypeptide.
- the mimic may bind the binding partner with equal, less, or greater affinity than the polypeptide it mimics.
- a molecular mimic may or may not have obvious amino acid sequence similarity to the polypeptide it mimics.
- a mimic may be naturally occurring or may be engineered.
- the mimic is a mimic of a member of a binding pair.
- the mimic is a mimic of another protein that binds to a member of the binding pair.
- the mimic may perform all functions of the mimicked polypeptide. In other aspects, the mimic does not perform all functions of the mimicked polypeptide.
- condition permitting the binding of two or more proteins to each other refers to conditions (e.g., protein concentration, temperature, pH, salt concentration) under which the two or more proteins would interact in the absence of a modulator or a candidate modulator.
- Conditions permitting binding may differ for individual proteins and may differ between protein-protein interaction assays (e.g., surface plasmon resonance assays, biolayer interferometry assays, enzyme-linked immunosorbent assays (ELISA), extracellular interaction assays, and cell surface interaction assays.
- protein-protein interaction assays e.g., surface plasmon resonance assays, biolayer interferometry assays, enzyme-linked immunosorbent assays (ELISA), extracellular interaction assays, and cell surface interaction assays.
- Percent (%) amino acid sequence identity with respect to a reference polypeptide sequence is defined as the percentage of amino acid residues in a candidate sequence that are identical with the amino acid residues in the reference polypeptide sequence, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity, and not considering any conservative substitutions as part of the sequence identity. Alignment for purposes of determining percent amino acid sequence identity can be achieved in various ways that are within the skill in the art, for instance, using publicly available computer software such as BLAST, BLAST-2, ALIGN or Megalign (DNASTAR) software. Those skilled in the art can determine appropriate parameters for aligning sequences, including any algorithms needed to achieve maximal alignment over the full-length of the sequences being compared.
- % amino acid sequence identity values are generated using the sequence comparison computer program ALIGN-2.
- the ALIGN-2 sequence comparison computer program was authored by Genentech, Inc., and the source code has been filed with user documentation in the U.S. Copyright Office, Washington D.C., 20559, where it is registered under U.S. Copyright Registration No. TXU510087.
- the ALIGN-2 program is publicly available from Genentech, Inc., South San Francisco, California, or may be compiled from the source code.
- the ALIGN-2 program should be compiled for use on a UNIX operating system, including digital UNIX V4.0D. All sequence comparison parameters are set by the ALIGN-2 program and do not vary.
- % amino acid sequence identity of a given amino acid sequence A to, with, or against a given amino acid sequence B is calculated as follows:
- sample refers to a composition that is obtained or derived from a subject and/or individual of interest that contains a cellular and/or other molecular entity that is to be characterized and/or identified, for example, based on physical, biochemical, chemical, and/or physiological characteristics.
- disease sample and variations thereof refers to any sample obtained from a subject of interest that would be expected or is known to contain the cellular and/or molecular entity that is to be characterized.
- Samples include, but are not limited to, tissue samples, primary or cultured cells or cell lines, cell supernatants, cell lysates, platelets, serum, plasma, vitreous fluid, lymph fluid, synovial fluid, follicular fluid, seminal fluid, amniotic fluid, milk, whole blood, plasma, serum, blood-derived cells, urine, cerebro-spinal fluid, saliva, buccal swab, sputum, tears, perspiration, mucus, tumor lysates, and tissue culture medium, tissue extracts such as homogenized tissue, tumor tissue, cellular extracts, and combinations thereof.
- the sample may be an archival sample, a fresh sample, or a frozen sample.
- the sample is a formalin-fixed and paraffin- embedded (FFPE) tumor tissue sample.
- FFPE formalin-fixed and paraffin- embedded
- treatment refers to clinical intervention in an attempt to alter the natural course of the individual being treated, and can be performed either for prophylaxis or during the course of clinical pathology.
- Desirable effects of treatment include, but are not limited to, preventing occurrence or recurrence of disease (e.g., preventing herpesvirus infection, genital herpes, herpes simplex encephalitis, zoonotic MCHV infection, HCMV infection, chicken pox, shingles, Kaposi’s sarcoma, HHV-associated multicentric Castleman’s disease, primary effusion lymphoma, or KSHV inflammatory cytokine syndrome), reducing or preventing recurrent or secondary infection in a patient having an infection, alleviation of symptoms, diminishment of any direct or indirect pathological consequences of the disease, decreasing the rate of disease progression, amelioration or palliation of the disease state, and remission or improved prognosis.
- the “pathology” of a disease or condition includes all phenomena that compromise the well-being of the patient.
- the disclosure features a method of identifying a modulator of the interaction between a protein of Table 1 and a protein of Table 2, the method comprising: (a) providing a candidate modulator; (b) contacting a protein of Table 1 with a protein of Table 2 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 1 to the protein of Table 2, wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring the binding of the protein of Table 1 to the protein of Table 2, wherein an increase or decrease in binding in the presence of the candidate modulator relative to binding in the absence of the candidate modulator identifies the candidate modulator as a modulator of the interaction between the protein of Table 1 and the protein of Table 2.
- Increased or decreased binding may be assessed using, e.g., surface plasmon resonance, biolayer interferometry, or an enzyme-linked immunosorbent assay (ELISA).
- the candidate modulator is identified as a modulator if the increase in binding is at least 40%.
- the increase in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 100%, or more than 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%- 85%, 85%-95%, 95%-100%, or more than 100%).
- the increase in binding is at least 70%.
- the candidate modulator is identified as a modulator if the decrease in binding is at least 40%.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- the decrease in binding is at least 70%.
- the disclosure features a method of identifying a modulator of a downstream activity of a protein of Table 1 , the method comprising (a) providing a candidate modulator; (b) contacting the protein of Table 1 with a protein of Table 2 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 1 to the protein of Table 2, wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring a downstream activity of the protein of Table 1 , wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the protein of Table 1.
- the disclosure features a method of identifying a modulator of a downstream activity of a protein of Table 2, the method comprising (a) providing a candidate modulator; (b) contacting the protein of Table 2 with a protein of Table 1 in the presence or absence of the candidate modulator under conditions permitting the binding of the protein of Table 2 to the protein of Table 1 , wherein the protein of Table 1 and the protein of Table 2 are reported to interact in Table 3; and (c) measuring a downstream activity of the protein of Table 2, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the protein of Table 2.
- the modulator is an inhibitor of the downstream activity of the protein of Table 1 or the protein of Table 2.
- the change in the downstream activity is a decrease in the amount, strength, or duration of the downstream activity.
- the downstream activity of the protein of Table 1 or the protein of Table 2 is infection of a cell by a member of the viral family Herpesviridae.
- infection is decreased in the presence of the modulator, e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% or decreased by 100% (i.e., abolished), e.g., decreased by 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%, e.g., as measured in a viral infection assay (e.g., as described in Cantuti-Castelvetri et al., Science, DOI:
- infection is decreased by at least 40% in the presence of the modulator.
- the modulator is an activator of the downstream activity of the protein of Table 1 or the protein of Table 2.
- the change in the downstream activity is an increase in the amount, strength, or duration of the downstream activity.
- the modulator is an antibody or antigen-binding fragment thereof that binds the protein of Table 1 . In some aspects, the modulator is an antibody or antigen-binding fragment thereof that binds the protein of Table 2.
- the disclosure features a method of identifying a modulator of the interaction between the HCMV UL6 protein and MERTK or VEGFR2, the method comprising (a) providing a candidate modulator; (b) contacting the HCMV UL6 protein with MERTK or VEGFR2 in the presence or absence of the candidate modulator under conditions permitting the binding of the HCMV UL6 protein to MERTK or VEGFR2; and (c) measuring the binding of the HCMV UL6 protein to MERTK or VEGFR2, wherein an increase or decrease in binding in the presence of the candidate modulator relative to binding in the absence of the candidate modulator identifies the candidate modulator as a modulator of the interaction between the HCMV UL6 protein and MERTK or VEGFR2.
- the method is a method of identifying a modulator of the interaction between the HCMV UL6 protein and MERTK, and the method comprises contacting the HCMV UL6 protein with MERTK. In other aspects, the method is a method of identifying a modulator of the interaction between the HCMV UL6 protein and VEGFR2, and the method comprises contacting the HCMV UL6 protein with VEGFR2.
- the disclosure features a method of identifying a modulator of a downstream activity of the HCMV UL6 protein, the method comprising (a) providing a candidate modulator; (b) contacting the HCMV UL6 protein with MERTK or VEGFR2 in the presence or absence of the candidate modulator under conditions permitting the binding of the HCMV UL6 protein to MERTK or VEGFR2; and (c) measuring a downstream activity of the HCMV UL6 protein, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of the HCMV UL6 protein.
- the method comprises contacting the HCMV UL6 protein with MERTK.
- the method comprises contacting the HCMV UL6 protein with VEGFR2.
- the disclosure features a method of identifying a modulator of a downstream activity of MERTK or VEGFR2, the method comprising (a) providing a candidate modulator; (b) contacting MERTK or VEGFR2 with the HCMV UL6 protein in the presence or absence of the candidate modulator under conditions permitting the binding of MERTK or VEGFR2 to the HCMV UL6 protein; and (c) measuring a downstream activity of MERTK or VEGFR2, wherein a change in the downstream activity in the presence of the candidate modulator relative to the downstream activity in the absence of the candidate modulator identifies the candidate modulator as a modulator of the downstream activity of MERTK or VEGFR2.
- the method is a method of identifying a modulator of a downstream activity of MERTK, and the method comprises contacting MERTK with the HCMV UL6 protein. In other aspects, the method is a method of identifying a modulator of a downstream activity of VEGFR2, and the method comprises contacting VEGFR2 with the HCMV UL6 protein.
- the candidate modulator is identified as a modulator if the increase in binding is at least 40%.
- the increase in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 100%, or more than 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%- 85%, 85%-95%, 95%-100%, or more than 100%).
- the increase in binding is at least 70%.
- the candidate modulator is identified as a modulator if the decrease in binding is at least 40%.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- the decrease in binding is at least 70%.
- the increase or decrease in binding is at least 70%, as measured by a surface plasmon resonance (SPR) assay, a BLI assay, or an enzyme-linked immunosorbent assay (ELISA).
- SPR surface plasmon resonance
- BLI BLI
- ELISA enzyme-linked immunosorbent assay
- the modulator is an inhibitor of the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2.
- the change in the downstream activity is a decrease in the amount, strength, or duration of the downstream activity.
- the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2 is infection of a cell by HCMV.
- infection is decreased in the presence of the modulator, e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% or decreased by 100% (i.e., abolished), e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%- 55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%, e.g., as measured in a viral infection assay (e.g., as described in Cantuti-Castelvetri et al., Science, DOI: 10.1126/science. abd2985, 2020 or a viral entry assay).
- infection is decreased by at least 40% in the presence of the modulator.
- the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2 is angiogenesis.
- angiogenesis e.g., angiogenesis associated with HCMV infection
- is decreased in the presence of the modulator e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%,
- angiogenesis is decreased by at least 40% in the presence of the modulator, e.g., as measured in a tube formation assay.
- the occurrence or severity of a HCMV-associated vasculopathy is decreased in the presence of the modulator, e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% or decreased by 100% (i.e., abolished), e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%- 75%, 75%-85%, 85%-95%, or 95%-100%.
- the modulator e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% or decreased by 100% (i.e., abolished), e.g., decreased by 5%
- downstream activity of the HCMV UL6 protein or MERTK is phosphorylation of MERTK.
- phosphorylation of MERTK is decreased in the presence of the modulator, e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%,
- phosphorylation of MERTK is decreased by at least 40% in the presence of the modulator, e.g., as measured using a Western blot or ELISA.
- phosphorylation of MERTK is decreased in the presence of the modulator, e.g., decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% or decreased by 100% (i.e., abolished), e.g., decreased by 5%-15%, 15%-25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%, e.g., as measured using a Western blot or ELISA.
- the modulator is an activator of the downstream activity of the HCMV UL6 protein or MERTK or VEGFR2.
- the change in the downstream activity is an increase in the amount, strength, or duration of the downstream activity.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein. In some aspects, the antibody or antigen-binding fragment thereof binds MERTK. In some aspects, the antibody or antigen-binding fragment thereof binds VEGFR2.
- the modulator or candidate modulator of the interaction between the protein of Table 1 and the protein of Table 2 is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid (e.g., an antisense oligonucleotide (ASO) or an siRNA).
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain. Exemplary modulators are further described in Section III herein.
- C Assays for modulation of protein-protein interactions
- the binding of the protein of Table 1 and the protein of Table 2 in the presence or absence of the candidate modulator is assessed in an assay for protein-protein interaction.
- Modulation of the interaction between the protein of Table 1 and the protein of Table 2 may be identified as an increase in protein-protein interaction in the presence of the modulator compared to protein-protein interaction in the absence of the modulator, e.g., an increase of 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 80%, 90%, 95%, 100%, or more than 100% (e.g., 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, 95%-100%, or more than 100%) in protein-protein interaction.
- modulation may be identified as a decrease in protein-protein interaction in the presence of the modulator compared to protein-protein interaction in the absence of the modulator, e.g., an decrease of 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 80%, 90%, 95%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%- 55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in protein-protein interaction.
- the assay for protein-protein interaction may be, e.g., an SPR assay, a biolayer interferometry (BLI) assay, an enzyme-linked immunosorbent assay (ELISA), an extracellular interaction assay, or a cell surface interaction assay.
- SPR assay
- BLI biolayer interferometry
- ELISA enzyme-linked immunosorbent assay
- extracellular interaction assay or a cell surface interaction assay.
- the protein-protein interaction assay is a cell surface interaction assay.
- one or more prey proteins are expressed as extracellular domain (ECD) fusion proteins on the cell surface and are tested for interaction with one or more bait proteins expressed as a soluble construct using, e.g., a fluorescent assay wherein the bait protein comprises a fluorescent tag.
- ECD extracellular domain
- the prey protein or prey proteins comprise one or more fusion proteins in which the extracellular domain (ECD) of a prey protein of interest is conjugated (e.g., fused) to one or more additional moieties (e.g., a glycosylphosphatidylinositol (GPI)-gD (gDGPI) tag) such that the prey fusion protein is expressed on the cell surface.
- ECD extracellular domain
- additional moieties e.g., a glycosylphosphatidylinositol (GPI)-gD (gDGPI) tag
- the anchor is capable of tethering the extracellular domain to the surface of a plasma membrane of a cell.
- the anchor is a glycosylphosphatidyl-inositol (GPI) polypeptide.
- the anchor is a moiety used in protein lipidation, e.g., a moiety used in cysteine palmitoylation, glycine myristoylation, lysine fatty-acylation, cholesterol esterification, cysteine prenylation, or serine fatty- acylation.
- the tag can be directly or indirectly visualized, or otherwise detected.
- the tag may comprise a moiety that can be detected using an antibody or an antibody fragment, e.g., may be a glycoprotein D (gD) polypeptide.
- the tag comprises a fluorescent protein.
- the bait protein may be conjugated to one or more additional moieties such that the bait fusion protein is soluble.
- the additional moiety or moieties may also increase the avidity of the bait fusion protein for the prey protein, e.g., by multimerizing the bait protein. Increasing avidity may increase the detection of low-affinity interactions.
- the additional moiety causes tetramerization of the bait protein.
- the bait fusion protein comprises an Avi tag, a cleavage sequence (e.g., a TEV cleavage sequence), and an Fc tag, such that the Fc tag can be cleaved from the protein upon addition of the enzyme TEV protease.
- a cleavage sequence e.g., a TEV cleavage sequence
- an Fc tag e.g., a TEV cleavage sequence
- the Fc tag is cleaved
- the Avi tag is biotinylated
- the biotinylated bait fusion protein is conjugated to a fluorescent streptavidin (SA), e.g., a streptavidin conjugated to allophycocyanin (APC), to form a tetramerized bait fusion protein detectable in a fluorescence assay.
- SA fluorescent streptavidin
- APC allophycocyanin
- the prey fusion protein may be expressed (e.g., transfected, e.g., transiently transfected) in a cell.
- the cell may be a human cell, e.g., a COS7 cell.
- Transfected cells may be placed in a well, e.g., a well in a 384-well plate.
- the bait fusion protein may be expressed (e.g., transfected, e.g., transiently transfected) in a cell, e.g., a mammalian cell. Bait fusion proteins may be purified using standard protocols, e.g., as described in Ramani et al., Anal Biochem, 420: 127-138, 2012.
- a solution comprising the bait protein (e.g., the purified bait fusion protein conjugated to fluorescent SA) may be added to one or more wells containing cells expressing a prey protein (e.g., to one or more wells of a 384-well plate).
- the assay may then be incubated and washed one or more times to remove non-bound bait protein.
- the cells may then be fixed, e.g., with 4% paraformaldehyde, to preserve protein-protein interactions.
- detecting an interaction comprises detecting a signal, e.g., a fluorescent signal, at a location on the solid surface that is above a threshold level (e.g., a signal indicating the presence of a query protein at the location, e.g., a signal from a moiety comprised by the bait fusion protein (e.g., multimerized query protein)).
- a signal e.g., a fluorescent signal
- the signal may be directly or indirectly visualizable or otherwise detectable.
- the detecting is semi-automated or automated.
- the interaction may be a transient interaction and/or a low-affinity interaction, e.g., a micromolar-affinity interaction.
- the bait fusion protein e.g., a multimerized query protein
- the prey fusion protein comprises a fluorescent SA
- interaction between the bait fusion protein and the prey fusion protein may be detected by fluorescence microscopy. Relatively high fluorescence indicates that the bait fusion protein is present, i.e. , that the bait fusion protein and the prey fusion protein interact.
- the protein-protein interaction assay is an extracellular interaction assay, e.g., an avidity-based extracellular interaction screen (AVEXIS) (Bushell et al., Genome Res, 18: 622-630, 2008; Martinez-Martin et al., J Immunol Res, 2197615, 2017).
- AVEXIS avidity-based extracellular interaction screen
- the assay for protein-protein interaction is a surface plasmon resonance (SPR) assay.
- SPR assays are used to confirm or validate assays detected in an extracellular interaction assay or a cell surface interaction assay, e.g., a high-throughput extracellular interaction screen or a high-throughput cell surface interaction screen.
- a prey protein is expressed as a fusion protein comprising the extracellular domain (ECD) of the protein conjugated to an additional moiety, e.g., an Fc tag.
- ECD extracellular domain
- the prey fusion protein may be purified.
- the prey protein may be immobilized on a sensor chip, e.g. a GLC or CM5 sensor chip, by amine coupling.
- the bait protein may be provided in a soluble form, e.g., as a protein domain fused to a soluble tag.
- the bait fusion protein may be purified.
- modulation of the binding of the protein of Table 1 and the protein of Table 2 is measured as a difference in SPR signal response units (RU) in the presence compared to the absence of the modulator.
- the assay for protein-protein interaction is a biolayer interferometry (BLI) assay.
- the BLI assay is performed using isolated ECDs, e.g., isolated ECDs as described herein.
- modulation of the binding of the protein of Table 1 and the protein of Table 2 is measured as a difference in wavelength shift (Dl) measured at a biosensor tip in the presence compared to the absence of the modulator.
- the assay for protein-protein interaction is an enzyme-linked immunosorbent assay (ELISA).
- a first protein is bound to a plate (e.g., directly bound to a plate or bound to a plate via an affinity tag recognized by an antibody bound to a plate) and a second protein is provided in a soluble form, e.g., as an isolated ECD as described herein.
- An interaction between the first protein and the second protein may be detected by providing an antibody that binds to the second protein or to an affinity tag thereof, wherein the antibody can be detected, e.g., visualized, in an assay for presence of the antibody.
- the assay is an isothermal titration calorimetry (ITC) assay, an assay comprising immunoprecipitation, or an assay comprising an ALPHASCREENTM technology.
- ITC isothermal titration calorimetry
- ALPHASCREENTM technology an assay comprising an ALPHASCREENTM technology.
- the candidate modulator is provided to a cell (e.g., a mammalian cell), to cell culture media, to conditioned media, and/or to a purified form of the protein of Table 1 and/or the protein of Table 2.
- the candidate modulator is provided at a concentration of at least 0.1 nM, 0.5 nM, 1 nM, 10 nM, 50 nM, 100 nM, 250 nM, 500 nM, 750 nM, 1 pM, 2 pM, 3 pM, 5 pM, or 10 pM.
- the candidate modulator is provided at a concentration of between 0.1 nM and 10 pM.
- the candidate modulator is provided in a solution, e.g., in a soluble form.
- the candidate modulator is identified as a modulator if the increase in binding is at least 50%.
- the increase in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 100%, or more than 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%- 85%, 85%-95%, 95%-100%, or more than 100%).
- the increase in binding is at least 50%.
- the candidate modulator is identified as a modulator if the decrease in binding is at least 50%.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- the decrease in binding is at least 50%.
- the modulator or candidate modulator is a small molecule.
- Small molecules are molecules other than binding polypeptides or antibodies as defined herein that may bind, preferably specifically, to a protein of Table 1 or a protein of Table 2. Binding small molecules may be identified and chemically synthesized using known methodology (see, e.g., PCT Publication Nos. WO00/00823 and WOOO/39585). Binding small molecules are usually less than about 2000 daltons in size (e.g., less than about 2000, 1500, 750, 500, 250 or 200 daltons in size), wherein such organic small molecules that are capable of binding, preferably specifically, to a polypeptide as described herein may be identified without undue experimentation using well known techniques.
- Binding small molecules may be, for example, aldehydes, ketones, oximes, hydrazones, semicarbazones, carbazides, primary amines, secondary amines, tertiary amines, N-substituted hydrazines, hydrazides, alcohols, ethers, thiols, thioethers, disulfides, carboxylic acids, esters, amides, ureas, carbamates, carbonates, ketals, thioketals, acetals, thioacetals, aryl halides, aryl sulfonates, alkyl halides, alkyl sulfonates, aromatic compounds, heterocyclic compounds, anilines, alkenes, alkynes, diols, amino alcohols, oxazolidines, oxazolines, thiazolidines, thiazolines, enamines, sulfonamides, ep
- the binding of the protein of Table 1 and the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in the presence of the small molecule.
- the binding of the protein of Table 1 and the protein of Table 2 is increased (e.g., increased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, or more than 100%, e.g., increased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55% , 55%-65%, 65%-75%, 75%-85%, 85%-95%, 95%-100%, or more than 100%) in the presence of the small molecule.
- a downstream activity (e.g., viral infection of a cell) of the protein of Table 1 or the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in the presence of the small molecule.
- the modulator or candidate modulator is an antibody or an antigen-binding fragment thereof binding the protein of Table 1 or the protein of Table 2.
- the antigenbinding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an ScFab, a VH domain, or a VHH domain.
- the modulator is an antibody or antigen-binding fragment thereof that binds the protein of Table 1 .
- the antibody or antigen-binding fragment thereof that binds the protein of Table 1 blocks the interaction of the protein of Table 1 with the protein of Table 2.
- the modulator is an antibody or antigen-binding fragment thereof that binds the protein of Table 2, e.g., binds to an epitope of the protein of Table 2 that interacts with the protein of Table 1 .
- the antibody or antigen-binding fragment thereof that binds the protein of Table 2 blocks the interaction of the protein of Table 2 with the protein of Table 1.
- the modulator is a multispecific antibody, e.g., a bispecific antibody.
- the binding of the protein of Table 1 and the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in the presence of the antibody or antigen-binding fragment.
- the binding of the protein of Table 1 and the protein of Table 2 is increased (e.g., increased by 5%, 10%, 20%, 30%,
- a downstream activity (e.g., viral infection of a cell) of a protein of Table 1 or a protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%- 15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%- 100%) in the presence of the antibody or antigen-binding fragment.
- the modulator or candidate modulator is a peptide that binds the protein of Table 1 or the protein of Table 2.
- the peptide may be the peptide may be naturally occurring or may be engineered.
- the peptide is a fragment of the protein of Table 1 , the protein of Table 2, or another protein that binds to the protein of Table 1 or the protein of Table 2.
- the peptide may bind the binding partner with equal, less, or greater affinity than the full-length protein.
- the peptide performs all functions of the full-length protein. In other aspects, the peptide does not perform all functions of the full-length protein.
- the binding of the protein of Table 1 or the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%- 15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%- 100%) in the presence of the peptide.
- the binding of the protein of Table 1 and the protein of Table 2 is increased (e.g., increased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
- a downstream activity of the protein of Table 1 or the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%,
- 80%, 90%, or 100% e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in the presence of the peptide.
- the modulator or candidate modulator is a mimic, e.g., a molecular mimic, that binds to a protein of Table 1 or a protein of Table 2.
- the mimic may be a molecular mimic of the protein of Table 1 or the protein of Table 2, or another protein that binds to the protein of Table 1 or the protein of Table 2.
- the mimic may perform all functions of the mimicked polypeptide. In other aspects, the mimic does not perform all functions of the mimicked polypeptide.
- the binding of the protein of Table 1 and the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%, e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%) in the presence of the mimic.
- the binding of the protein of Table 1 and the protein of Table 2 is increased (e.g., increased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
- a downstream activity of the protein of Table 1 or the protein of Table 2 is decreased (e.g., decreased by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%,
- the disclosure features a method of treating an individual having a herpes simplex virus 2 (HSV-2) infection or preventing a HSV-2 infection in an individual comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- HSV-2 herpes simplex virus 2
- the disclosure features a method of decreasing HSV-2 infection in an individual comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- the disclosure features a method of reducing HSV-2 attachment to a cell of an individual comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- the administering comprises contacting the cell of the individual with an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist.
- the CSPG5 antagonist results in a decrease in the binding of CSPG5 and the HSV-2 glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist
- the PRRG2 antagonist results in a decrease in the binding of PRRG2 and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the UNC5D antagonist results in a decrease in the binding of UNC5D and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the PLB1 antagonist results in a decrease in the binding of PLB1 and the HSV-2 gD protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist reduces the extent and/or severity of HSV-2 infection of the individual relative to infection in the absence of the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist, respectively.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a peptide.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HSV-2 gG protein and inhibits its binding to CSPG5, PRRG2, and/or UNC5D; or
- the antibody or antigen-binding fragment thereof binds the HSV-2 gD protein and inhibits its binding to PLB1 .
- the antibody or antigen-binding fragment thereof binds CSPG5, PRRG2, UNC5D, or PLB1 .
- the antibody or antigen-binding fragment thereof inhibits the binding of CSPG5, PRRG2, or UNC5D to the HSV-2 gG protein; or (b) the antibody or antigenbinding fragment thereof inhibits the binding of PLB1 to the HSV-2 gD protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has genital herpes or herpes simplex encephalitis. In some aspects, the individual is a human.
- the disclosure features a method of treating an individual having a macacine alphaherpesvirus (MCHV) infection or preventing a MCHV infection in an individual comprising administering to the individual an effective amount of a PILRA antagonist.
- MCHV macacine alphaherpesvirus
- the disclosure features a method of decreasing MCHV infection in an individual comprising administering to the individual an effective amount of a PILRA antagonist.
- the disclosure features a method of reducing MCHV attachment to a cell of an individual comprising administering to the individual an effective amount of a PILRA antagonist.
- the administering comprises contacting the cell of the individual with an effective amount of a PILRA antagonist.
- the PILRA antagonist results in a decrease in the binding of PILRA and the MCHV glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- the decrease in binding is at least 40%.
- the PILRA antagonist reduces the extent and/or severity of MCHV infection of the individual relative to infection in the absence of the PILRA antagonist.
- the PILRA antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the PILRA antagonist is a peptide.
- the PILRA antagonist is an antibody or antigen-binding fragment thereof. In some aspects, the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA. In some aspects, the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA. In some aspects, the antibody or antigen-binding fragment thereof inhibits the binding of PILRA to the MCHV gG protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has a zoonotic MCHV infection, e.g., an MCHV infection transmitted by a macaque monkey to a human. In some aspects, the individual is a human.
- the disclosure features a method of treating an individual having a human cytomegalovirus (HCMV) infection or preventing a HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK (MER) antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, a or a SGCA antagonist.
- HCMV human cytomegalovirus
- the disclosure features a method of treating an individual having a HCMV infection or preventing a HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist. In some aspects, the disclosure features a method of treating an individual having a HCMV infection or preventing a HCMV infection in an individual comprising administering to the individual an effective amount of a MERTK antagonist.
- the disclosure features a method of decreasing HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist.
- the disclosure features a method of decreasing HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist. In some aspects, the disclosure features a method of decreasing HCMV infection in an individual comprising administering to the individual an effective amount of a MERTK antagonist.
- the disclosure features a method of reducing HCMV attachment to a cell of an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist.
- the administering comprises contacting the cell of the individual with an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist.
- the disclosure features a method of reducing HCMV attachment to a cell of an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist. In some aspects, the disclosure features a method of reducing HCMV attachment to a cell of an individual comprising administering to the individual an effective amount of a MERTK antagonist.
- the VEGFR2 antagonist results in a decrease in the binding of VEGFR2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the MERTK antagonist results in a decrease in the binding of MERTK and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the PDGFRa antagonist results in a decrease in the binding of PDGFRa and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the KIRREL2 antagonist results in a decrease in the binding of KIRREL2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB5 antagonist results in a decrease in the binding of LILRB5 and the HCMV UL9 protein relative to binding of the two proteins in the absence of the antagonist;
- the ULBP1 antagonist results in a decrease in the binding of ULBP1 and the HC
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%- 85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist reduces the extent and/or severity of HCMV infection of the individual relative to infection in the absence of the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist, respectively.
- the VEGFR2 antagonist reduces the extent and/or severity of HCMV infection of the individual relative to infection in the absence of the VEGFR2 antagonist. In some aspects, the MERTK antagonist, reduces the extent and/or severity of HCMV infection of the individual relative to infection in the absence of the MERTK antagonist.
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a small molecule, an antibody or antigenbinding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a peptide.
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein and inhibits its binding to VEGFR2, MERTK, PDGFRa, and/or KIRREL2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL9 protein and inhibits its binding to LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , and/or KIR3DL1 ;
- the antibody or antigen-binding fragment thereof binds the HCMV UL142 protein and inhibits its binding to PRRG2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL144 protein and inhibits its binding to KLRAP1 ; or
- the antibody or antigen-binding fragment thereof binds
- the antibody or antigen-binding fragment thereof binds VEGFR2, MERTK, PDGFRa, KIRREL2, LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , KIR3DL1 , PRRG2, KLRAP1 , or SGCA.
- the antibody or antigenbinding fragment thereof inhibits the binding of VEGFR2, MERTK, PDGFRa, or KIRREL2 to the HCMV UL6 protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , or KIR3DL1 to the HCMV UL9 protein; (c) the antibody or antigen-binding fragment thereof inhibits the binding of PRRG2 to the HCMV UL142 protein; (d) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HCMV UL144 protein; or (e) the antibody or antigen-binding fragment thereof inhibits the binding of SGCA to the HCMV RL10 protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has a congenital HCMV infection. In some aspects, the individual has CMV-related allograft rejection. In some aspects, the individual is a human.
- the disclosure features a method of treating an individual having a Varicella zoster virus (VZV) infection or preventing a VZV infection in an individual comprising administering to the individual an effective amount of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- VZV Varicella zoster virus
- the disclosure features a method of decreasing VZV infection in an individual comprising administering to the individual an effective amount of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- the disclosure features a method of reducing VZV attachment to a cell of an individual comprising administering to the individual an effective amount of a an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- the administering comprises contacting the cell of the individual with an effective amount of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist.
- the ICAM1 antagonist results in a decrease in the binding of ICAM1 and the VZV glycoprotein C (gC) protein relative to binding of the two proteins in the absence of the antagonist;
- the MUSK antagonist results in a decrease in the binding of MUSK and the VZV glycoprotein B (gB) protein relative to binding of the two proteins in the absence of the antagonist
- the HAVCR1 antagonist results in a decrease in the binding of HAVCR1 and the VZV gB protein relative to binding of the two proteins in the absence of the antagonist
- the MOG antagonist results in a decrease in the binding of MOG and the VZV glycoprotein I (gl) protein relative to binding of the two proteins in the absence of the antagonist
- the KIAA0319L antagonist results in a decrease in the binding of KIAA0319L and the VZV gl protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%- 35%, 35%-45% , 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist reduces the extent and/or severity of VZV infection of the individual relative to infection in the absence of the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist, respectively.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a peptide.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the VZV gC protein and inhibits its binding to ICAM1 ;
- the antibody or antigen-binding fragment thereof binds the VZV gB protein and inhibits its binding to MUSK and/or HAVCR1 ; or (c) the antibody or antigen-binding fragment thereof binds the VZV gl protein and inhibits its binding to MOG and/or KIAA0319L. In some aspects, the antibody or antigen-binding fragment thereof binds ICAM1 , MUSK, HAVCR1 , MOG, or KIAA0319L.
- the antibody or antigen-binding fragment thereof inhibits the binding of ICAM1 to the VZV gC protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of MUSK or HAVCR1 to the VZV gB protein; or (c) the antibody or antigen-binding fragment thereof inhibits the binding of MOG or KIAA0319L to the VZV gl protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has chicken pox or shingles. In some aspects, the individual is a human.
- the disclosure features a method of treating an individual having a human herpesvirus 8 (HHV8) infection or preventing a HHV8 infection in an individual comprising administering to the individual an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- HHV8 human herpesvirus 8
- the disclosure features a method of decreasing HHV8 infection in an individual comprising administering to the individual an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- the disclosure features a method of reducing HHV8 attachment to a cell of an individual comprising administering to the individual an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- the administering comprises contacting the cell of the individual with an effective amount of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist.
- the KLRAP1 antagonist results in a decrease in the binding of KLRAP1 and the HHV8 K14 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB1 antagonist results in a decrease in the binding of LILRB1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the CLEC4G antagonist results in a decrease in the binding of CLEC4G and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT1 antagonist results in a decrease in the binding of FLRT1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT2 antagonist results in a decrease in the binding of FLRT2 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist; or
- the FLRT3 antagonist results in a decrease in the binding of FLRT3 and the HHV8 KCP protein
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%- 95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist reduces the extent and/or severity of HHV8 infection of the individual relative to infection in the absence of the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist, respectively.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a peptide.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HHV8 K14 protein and inhibits its binding to KLRAP1 ; or (b) the antibody or antigen-binding fragment thereof binds the HHV8 KCP protein and inhibits its binding to LILRB1 , CLEC4G, FLRT1 , FLRT2, and/or FLRT3.
- the antibody or antigen-binding fragment thereof binds KLRAP1 , LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3.
- the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HHV8 K14 protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3 to the HHV8 KCP protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has Kaposi’s sarcoma, primary effusion lymphoma, HHV8- associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome. In some aspects, the individual is a human.
- the disclosure features a methods prophylaxis against infection of an individual by a herpesvirus, e.g., methods of preventing a HSV-2 infection in an individual comprising administering to the individual an effective amount of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist; preventing a MCHV infection in an individual comprising administering to the individual an effective amount of a PILRA antagonist; preventing a HCMV infection in an individual comprising administering to the individual an effective amount of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG
- infection of an individual by a herpesvirus is decreased or eliminated in patients treated according to the above-described methods relative to untreated patients or relative to patients treated using a control method (e.g., SOC), e.g., decreased by at least 5%, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, or at least 99% (e.g., decreased by 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- SOC e.g., SOC
- the treatment reduces the extent and/or severity of herpesvirus infection in the individual relative to infection in the absence of the treatment.
- the extent and/or severity of herpesvirus infection is decreased in patients treated according to the above-described methods relative to untreated patients or relative to patients treated using a control method (e.g., SOC), e.g., decreased by at least 5%, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, or at least 99% (e.g., decreased by 5%- 15%, 15%-25% , 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%- 100%).
- the method comprises administering to the individual at least one additional therapy (e.g., one, two, three, four, or more than four additional therapies).
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, PLB1 antagonist, PILRA antagonist, VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, SGCA antagonist, ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, KIAA0319L antagonist, KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist may be administered to the individual prior
- compositions utilized in the methods, medicaments, and uses described herein can be administered by any suitable method, including, for example, intravenously, intramuscularly, subcutaneously, intradermally, percutaneously, intraarterially, intraperitoneally, intralesionally, intracranially, intraarticularly, intraprostatically, intrapleurally, intratracheally, intrathecally, intranasally, intravaginally, intrarectally, topically, intratumorally, peritoneally, subconjunctivally, intravesicularly, mucosally, intrapericardially, intraumbilically, intraocularly, intraorbitally, orally, transdermally, intravitreally (
- compositions utilized in the methods described herein can also be administered systemically or locally.
- the method of administration can vary depending on various factors (e.g., the compound or composition being administered and the severity of the condition, disease, or disorder being treated).
- a modulator of a protein- protein interaction is administered intravenously, intramuscularly, subcutaneously, topically, orally, transdermally, intraperitoneally, intraorbitally, by implantation, by inhalation, intrathecally, intraventricularly, or intranasally.
- Dosing can be by any suitable route, e.g., by injections, such as intravenous or subcutaneous injections, depending in part on whether the administration is brief or chronic.
- Various dosing schedules including but not limited to single or multiple administrations over various time-points, bolus administration, and pulse infusion are contemplated herein.
- a modulator of a protein-protein interaction described herein may be formulated, dosed, and administered in a fashion consistent with good medical practice.
- Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners.
- the modulator need not be, but is optionally formulated with and/or administered concurrently with one or more agents currently used to prevent or treat the disorder in question.
- the effective amount of such other agents depends on the amount of the modulator present in the formulation, the type of disorder or treatment, and other factors discussed above. These are generally used in the same dosages and with administration routes as described herein, or about from 1 to 99% of the dosages described herein, or in any dosage and by any route that is empirically/clinically determined to be appropriate.
- the disclosure features a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist for use as a medicament.
- the medicament is for treating an HSV-2 infection.
- the medicament is for treating genital herpes or herpes simplex encephalitis.
- the disclosure features use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for treatment of an HSV-2 infection.
- the disclosure features use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for treatment of genital herpes or herpes simplex encephalitis.
- the disclosure features use of a CSPG5 antagonist, a PRRG2 antagonist, a UNC5D antagonist, or a PLB1 antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HSV-2.
- the CSPG5 antagonist results in a decrease in the binding of CSPG5 and the HSV-2 glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist
- the PRRG2 antagonist results in a decrease in the binding of PRRG2 and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the UNC5D antagonist results in a decrease in the binding of UNC5D and the HSV-2 gG protein relative to binding of the two proteins in the absence of the antagonist
- the PLB1 antagonist results in a decrease in the binding of PLB1 and the HSV-2 gD protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is a peptide.
- the CSPG5 antagonist, PRRG2 antagonist, UNC5D antagonist, or PLB1 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HSV-2 gG protein and inhibits its binding to CSPG5, PRRG2, and/or UNC5D; or
- the antibody or antigen-binding fragment thereof binds the HSV-2 gD protein and inhibits its binding to PLB1 .
- the antibody or antigen-binding fragment thereof binds CSPG5, PRRG2, UNC5D, or PLB1 .
- the antibody or antigen-binding fragment thereof inhibits the binding of CSPG5, PRRG2, or UNC5D to the HSV-2 gG protein; or (b) the antibody or antigenbinding fragment thereof inhibits the binding of PLB1 to the HSV-2 gD protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has genital herpes or herpes simplex encephalitis. In some aspects, the individual is a human.
- the disclosure features a PILRA antagonist for use as a medicament for treating an MCHV infection, e.g., a zoonotic MCHV infection.
- the disclosure features use of a PILRA antagonist in the manufacture of a medicament for treatment of a MCHV infection, e.g., a zoonotic MCHV infection.
- the disclosure features use of a PILRA antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by MCHV.
- the PILRA antagonist results in a decrease in the binding of PILRA and the MCHV glycoprotein G (gG) protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%- 25%, 25%-35% , 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%).
- the decrease in binding is at least 40%.
- the PILRA antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the PILRA antagonist is a peptide.
- the PILRA antagonist is an antibody or antigen-binding fragment thereof. In some aspects, the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA. In some aspects, the antibody or antigen-binding fragment thereof binds the MCHV gG protein and inhibits its binding to PILRA. In some aspects, the antibody or antigen-binding fragment thereof inhibits the binding of PILRA to the MCHV gG protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the antibody is a bispecific antibody.
- the individual has a zoonotic MCHV infection, e.g., an MCHV infection transmitted by a macaque monkey to a human. In some aspects, the individual is a human.
- the disclosure features a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist for use as a medicament.
- the medicament is for treating a HCMV infection.
- the medicament is for treating CMV-related allograft rejection.
- the disclosure features use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for treatment of an HCMV infection.
- the disclosure features use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for treatment of CMV-related allograft rejection.
- the disclosure features use of a VEGFR2 antagonist, a MERTK antagonist, a PDGFRa antagonist, a KIRREL2 antagonist, a LILRB5 antagonist, a ULBP1 antagonist, a KIR2DL3 antagonist, a KIR2DS1 antagonist, a KIR2DS2 antagonist, a KIR2DS4 antagonist, a KIR2DS5 antagonist, a KIR2DL1 antagonist, a KIR3DL1 antagonist, a PRRG2 antagonist, a KLRAP1 antagonist, or a SGCA antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HCMV.
- the VEGFR2 antagonist results in a decrease in the binding of VEGFR2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the MERTK antagonist results in a decrease in the binding of MERTK and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the PDGFRa antagonist results in a decrease in the binding of PDGFRa and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the KIRREL2 antagonist results in a decrease in the binding of KIRREL2 and the HCMV UL6 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB5 antagonist results in a decrease in the binding of LILRB5 and the HCMV UL9 protein relative to binding of the two proteins in the absence of the antagonist;
- the ULBP1 antagonist results in a decrease in the binding of ULBP1 and the HC
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%- 85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a small molecule, an antibody or antigenbinding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the VEGFR2 antagonist, MERTK antagonist, PDGFRa antagonist, KIRREL2 antagonist, LILRB5 antagonist, ULBP1 antagonist, KIR2DL3 antagonist, KIR2DS1 antagonist, KIR2DS2 antagonist, KIR2DS4 antagonist, KIR2DS5 antagonist, KIR2DL1 antagonist, KIR3DL1 antagonist, PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is a peptide.
- PRRG2 antagonist, KLRAP1 antagonist, or SGCA antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HCMV UL6 protein and inhibits its binding to VEGFR2, MERTK, PDGFRa, and/or KIRREL2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL9 protein and inhibits its binding to LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , and/or KIR3DL1 ;
- the antibody or antigen-binding fragment thereof binds the HCMV UL142 protein and inhibits its binding to PRRG2;
- the antibody or antigen-binding fragment thereof binds the HCMV UL144 protein and inhibits its binding to KLRAP1 ; or
- the antibody or antigen-binding fragment thereof binds
- the antibody or antigen-binding fragment thereof binds VEGFR2, MERTK, PDGFRa, KIRREL2, LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , KIR3DL1 , PRRG2, KLRAP1 , or SGCA.
- the antibody or antigen-binding fragment thereof inhibits the binding of VEGFR2, MERTK, PDGFRa, or KIRREL2 to the HCMV UL6 protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB5, ULBP1 , KIR2DL3, KIR2DS1 , KIR2DS2, KIR2DS4, KIR2DS5, KIR2DL1 , or KIR3DL1 to the HCMV UL9 protein; (c) the antibody or antigen-binding fragment thereof inhibits the binding of PRRG2 to the HCMV UL142 protein; (d) the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HCMV UL144 protein; or (e) the antibody or antigen-binding fragment thereof inhibits the binding of SGCA to the HCMV RL10 protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the disclosure features an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist for use as a medicament.
- the medicament is for treating a VZV infection.
- the medicament is for treating chicken pox or shingles.
- the disclosure features use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for treatment of a VZV infection.
- the disclosure features use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for treatment of chicken pox or shingles. In some aspects, the disclosure features use of an ICAM1 antagonist, a MUSK antagonist, a HAVCR1 antagonist, a MOG antagonist, or a KIAA0319L antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by VZV.
- the ICAM1 antagonist results in a decrease in the binding of ICAM1 and the VZV glycoprotein C (gC) protein relative to binding of the two proteins in the absence of the antagonist;
- the MUSK antagonist results in a decrease in the binding of MUSK and the VZV glycoprotein B (gB) protein relative to binding of the two proteins in the absence of the antagonist
- the HAVCR1 antagonist results in a decrease in the binding of HAVCR1 and the VZV gB protein relative to binding of the two proteins in the absence of the antagonist
- the MOG antagonist results in a decrease in the binding of MOG and the VZV glycoprotein I (gl) protein relative to binding of the two proteins in the absence of the antagonist
- the KIAA0319L antagonist results in a decrease in the binding of KIAA0319L and the VZV gl protein relative to binding of the two proteins in the absence of the antagonist.
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%- 35%, 35%-45% , 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%-95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is a peptide.
- the ICAM1 antagonist, MUSK antagonist, HAVCR1 antagonist, MOG antagonist, or KIAA0319L antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the VZV gC protein and inhibits its binding to ICAM1 ;
- the antibody or antigen-binding fragment thereof binds the VZV gB protein and inhibits its binding to MUSK and/or HAVCR1 ; or (c) the antibody or antigen-binding fragment thereof binds the VZV gl protein and inhibits its binding to MOG and/or KIAA0319L. In some aspects, the antibody or antigen-binding fragment thereof binds ICAM1 , MUSK, HAVCR1 , MOG, or KIAA0319L.
- the antibody or antigen-binding fragment thereof inhibits the binding of ICAM1 to the VZV gC protein; (b) the antibody or antigen-binding fragment thereof inhibits the binding of MUSK or HAVCR1 to the VZV gB protein; or (c) the antibody or antigen-binding fragment thereof inhibits the binding of MOG or KIAA0319L to the VZV gl protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- the disclosure features a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist for use as a medicament.
- the medicament is for treating an HHV8 infection.
- the medicament is for treating Kaposi’s sarcoma, primary effusion lymphoma, HHV8-associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome.
- the KLRAP1 antagonist results in a decrease in the binding of KLRAP1 and the HHV8 K14 protein relative to binding of the two proteins in the absence of the antagonist;
- the LILRB1 antagonist results in a decrease in the binding of LILRB1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the CLEC4G antagonist results in a decrease in the binding of CLEC4G and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT1 antagonist results in a decrease in the binding of FLRT1 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist;
- the FLRT2 antagonist results in a decrease in the binding of FLRT2 and the HHV8 KCP protein relative to binding of the two proteins in the absence of the antagonist; or
- the FLRT3 antagonist results in a decrease in the binding of FLRT3 and the HHV8 KCP protein
- the decrease in binding is at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or 100% (e.g., 5%-15%, 15%-25%, 25%-35%, 35%-45%, 45%-55%, 55%-65%, 65%-75%, 75%-85%, 85%- 95%, or 95%-100%). In some aspects, the decrease in binding is at least 40%.
- the disclosure features use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for treatment of an HHV8 infection.
- the disclosure features use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for treatment of Kaposi’s sarcoma, primary effusion lymphoma, HHV8-associated multicentric Castleman’s disease, or KSHV inflammatory cytokine syndrome.
- the disclosure features use of a KLRAP1 antagonist, a LILRB1 antagonist, a CLEC4G antagonist, a FLRT1 antagonist, a FLRT2 antagonist, or a FLRT3 antagonist in the manufacture of a medicament for reducing or preventing infection of a cell by HHV8.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a small molecule, an antibody or antigen-binding fragment thereof, a peptide, a mimic, or an inhibitory nucleic acid.
- the inhibitory nucleic acid is an antisense oligonucleotide (ASO) or a small interfering RNA (siRNA).
- ASO antisense oligonucleotide
- siRNA small interfering RNA
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is a peptide.
- the KLRAP1 antagonist, LILRB1 antagonist, CLEC4G antagonist, FLRT1 antagonist, FLRT2 antagonist, or FLRT3 antagonist is an antibody or antigen-binding fragment thereof.
- the antibody or antigen-binding fragment thereof binds the HHV8 K14 protein and inhibits its binding to KLRAP1 ; or (b) the antibody or antigen-binding fragment thereof binds the HHV8 KCP protein and inhibits its binding to LILRB1 , CLEC4G, FLRT1 , FLRT2, and/or FLRT3.
- the antibody or antigen-binding fragment thereof binds KLRAP1 , LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3.
- the antibody or antigen-binding fragment thereof inhibits the binding of KLRAP1 to the HHV8 K14 protein; or (b) the antibody or antigen-binding fragment thereof inhibits the binding of LILRB1 , CLEC4G, FLRT1 , FLRT2, or FLRT3 to the HHV8 KCP protein.
- the antigen-binding fragment is a bis-Fab, an Fv, a Fab, a Fab’-SH, a F(ab’)2, a diabody, a linear antibody, an scFv, an scFab, a VH domain, or a VHH domain.
- results of the screen for interaction between the herpes simplex virus 2 (HSV-2) glycoprotein G (gG) and the STM library are shown in Fig. 4.
- Results of the screen for interaction between the human cytomegalovirus (HCMV) protein UL144 and the STM library are shown in Fig. 12.
- Example 1 Interactions identified in Example 1 were validated using cell-based immunofluorescence assays.
- PRRG2 PRRG2, and UNC5D were identified as interactors.
- the hCMV protein UL6 targets the human host receptors VEGFR2 and MERTK (MER) (Fig. 23).
- the protein microarray technology, data analysis, and scoring procedures used to generate Fig. 23 are described in Ramani et al., Anal Biochem, 420: 127-138, 2012.
- the interactions between hCMV UL6 and MERTK and VEGFR2 were confirmed using surface plasmon resonance (Figs. 24A and 24B).
- SPR assays were performed using a XPR36 PROTEONTM Instrument (Biorad). In all measurements, proteins were immobilized on GLC sensor chips using standard amino coupling chemistry. Data were processed using the PROTEONTM Manager 3.1.0.6 software.
- Growth arrest-specific 6 is a natural ligand of MERTK.
- UL6 demonstrated increased binding to MERTK relative to Gas6 in a SPR assay (Fig. 25), and efficiently competed with Gas6 for binding to MERTK in a biolayer interferometry (BLI) assay (Fig. 30).
- the Gas6 and MERTK proteins used for this analysis were purchased from R&D.
- UL6 stimulation of HUVEC induced activation of MERTK and downstream signaling as shown by increased phosphorylation of the relevant proteins (MERTK, AKT, ERK42/44, and MEK) (Fig. 28).
- UL6- induced activation of MERTK and downstream effectors in the pathway was higher than that observed upon stimulation with the natural ligand, Gas6 (Fig. 28).
- HUVEC cells were stimulated with the relevant proteins at 37°C, washed with cold PBS, and subsequently lysed in lysis buffer. Lysates were subjected to SDS-PAGE, and Western blotting was performed using the listed antibodies. All antibodies utilized were purchased from Cell Signaling Technologies. Gas6 and VEGFA were purchased from R&D.
- HCMV is associated with several vasculopathies, including atherosclerosis, transplant vascular sclerosis, and glioblastoma.
- the hCMV protein UL7 is a relevant secreted factor that promotes angiogenesis in vitro (MacManiman et al., mBio, 5(6): e02035, 2014), and mediates leukocyte adhesion and inhibits proinflammatory cytokine production through unknown mechanisms (Engel et al., Immunol Cell Biol, 89(7): 753-766, 2011). The relationship of UL6 and MERTK to angiogenesis was investigated.
- MERTK was found to be expressed on the surface of human umbilical vein endothelial cells (HUVECs) (Fig. 27A). UL6 was found to bind to MERTK on the surface of these cells (Fig. 27B).
- UL6 was found to promote angiogenesis in vitro. Tube formation assays were performed as shown in Fig. 29A: HUVEC cells were grown in 3D matrices (fibrin gel), and their ability to form capillarylike structures (or tubules) in the presence or absence of UL6 was assessed. UL6 was found to promote tube formation at a level comparable to the positive control VEGFA (Fig. 29B). UL6-mediated angiogenesis was found to be dependent on expression of MERTK on the endothelial cells: tube formation was decreased when cells were treated with MERTK siRNA (Fig. 31).
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| EP2564870A1 (en) * | 2010-03-26 | 2013-03-06 | The University of Tokyo | Pharmaceutical composition for treatment and prevention of herpesvirus infections |
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2022
- 2022-02-22 WO PCT/US2022/017301 patent/WO2022178415A1/en not_active Ceased
- 2022-02-22 JP JP2023550187A patent/JP2024512253A/en active Pending
- 2022-02-22 EP EP22708701.2A patent/EP4295157A1/en active Pending
- 2022-02-22 TW TW111106392A patent/TW202241941A/en unknown
-
2023
- 2023-08-21 US US18/235,972 patent/US20240011017A1/en active Pending
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2564870A1 (en) * | 2010-03-26 | 2013-03-06 | The University of Tokyo | Pharmaceutical composition for treatment and prevention of herpesvirus infections |
| US20190161532A1 (en) * | 2016-06-27 | 2019-05-30 | Aicuris Anti-Infective Cures Gmbh | Hcmv entry inhibitors |
Non-Patent Citations (5)
| Title |
|---|
| HUELSE JUSTUS M ET AL: "MERTK in cancer therapy: Targeting the receptor tyrosine kinase in tumor cells and the immune system", PHARMACOLOGY & THERAPEUTICS, ELSEVIER, GB, vol. 213, 14 May 2020 (2020-05-14), XP086249674, ISSN: 0163-7258, [retrieved on 20200514], DOI: 10.1016/J.PHARMTHERA.2020.107577 * |
| LI YULING ET AL: "The C-Mer Gene Is Induced by Epstein-Barr Virus Immediate-Early Protein BRLF1", JOURNAL OF VIROLOGY, vol. 78, no. 21, 1 November 2004 (2004-11-01), US, pages 11778 - 11785, XP093237100, ISSN: 0022-538X, Retrieved from the Internet <URL:https://journals.asm.org/doi/pdf/10.1128/JVI.78.21.11778-11785.2004> DOI: 10.1128/JVI.78.21.11778-11785.2004 * |
| MARTINEZ-MARTIN NADIA ET AL: "An Unbiased Screen for Human Cytomegalovirus Identifies Neuropilin-2 as a Central Viral Receptor", CELL, vol. 174, no. 5, 1 August 2018 (2018-08-01), Amsterdam NL, pages 1158 - 1171.e19, XP055915437, ISSN: 0092-8674, DOI: 10.1016/j.cell.2018.06.028 * |
| See also references of WO2022178415A1 * |
| YU S ET AL: "Murine Cytomegalovirus Infection Down-Regulates Receptor Tyrosine Kinase MerTK on Macrophages to Abrogate Allograft Tolerance - ATC Abstracts", : 2019 AMERICAN TRANSPLANT CONGRESS, 1 January 2019 (2019-01-01), XP093237108, Retrieved from the Internet <URL:https://atcmeetingabstracts.com/abstract/murine-cytomegalovirus-infection-down-regulates-receptor-tyrosine-kinase-mertk-on-macrophages-to-abrogate-allograft-tolerance/> * |
Also Published As
| Publication number | Publication date |
|---|---|
| US20240011017A1 (en) | 2024-01-11 |
| WO2022178415A1 (en) | 2022-08-25 |
| JP2024512253A (en) | 2024-03-19 |
| TW202241941A (en) | 2022-11-01 |
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