EP3610031A4 - Library quantitation and qualification - Google Patents

Library quantitation and qualification Download PDF

Info

Publication number
EP3610031A4
EP3610031A4 EP17905299.8A EP17905299A EP3610031A4 EP 3610031 A4 EP3610031 A4 EP 3610031A4 EP 17905299 A EP17905299 A EP 17905299A EP 3610031 A4 EP3610031 A4 EP 3610031A4
Authority
EP
European Patent Office
Prior art keywords
qualification
library quantitation
quantitation
library
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
EP17905299.8A
Other languages
German (de)
French (fr)
Other versions
EP3610031A1 (en
Inventor
Douglas A. Amorese
Bin Li
Benjamin G. Schroeder
Richard A. FEKETE
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Tecan Genomics Inc
Original Assignee
Nugen Technologies Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Nugen Technologies Inc filed Critical Nugen Technologies Inc
Publication of EP3610031A1 publication Critical patent/EP3610031A1/en
Publication of EP3610031A4 publication Critical patent/EP3610031A4/en
Pending legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
EP17905299.8A 2017-04-11 2017-04-11 Library quantitation and qualification Pending EP3610031A4 (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/US2017/027060 WO2018190814A1 (en) 2017-04-11 2017-04-11 Library quantitation and qualification

Publications (2)

Publication Number Publication Date
EP3610031A1 EP3610031A1 (en) 2020-02-19
EP3610031A4 true EP3610031A4 (en) 2020-11-18

Family

ID=63792657

Family Applications (1)

Application Number Title Priority Date Filing Date
EP17905299.8A Pending EP3610031A4 (en) 2017-04-11 2017-04-11 Library quantitation and qualification

Country Status (4)

Country Link
EP (1) EP3610031A4 (en)
JP (1) JP6983906B2 (en)
CN (1) CN110582577A (en)
WO (1) WO2018190814A1 (en)

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020197611A1 (en) * 2001-06-21 2002-12-26 Chagovetz Alexander Michael Method for real-time detection and quantification of nucleic acid sequences using fluorescent primers
US20100069250A1 (en) * 2008-08-16 2010-03-18 The Board Of Trustees Of The Leland Stanford Junior University Digital PCR Calibration for High Throughput Sequencing
EP2599879A1 (en) * 2011-11-30 2013-06-05 Agilent Technologies, Inc. A quantitative PCR-based method to predict the efficiency of target enrichment for next-generation sequencing using repetitive DNA elements (lines/sines) as negative controls
US20140186827A1 (en) * 2010-05-14 2014-07-03 Fluidigm, Inc. Assays for the detection of genotype, mutations, and/or aneuploidy

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE602005025791D1 (en) * 2004-10-18 2011-02-17 Univ Brandeis PROCESS FOR NUCLEIC ACID AMPLIFICATION
CN104093890B (en) * 2012-01-26 2016-04-20 纽亘技术公司 The composition produced for the enrichment of target nucleotide sequence and efficient library and method
SG11201405274WA (en) * 2012-02-27 2014-10-30 Cellular Res Inc Compositions and kits for molecular counting
US10501783B2 (en) * 2013-12-11 2019-12-10 Qiagen Gmbh Nucleic acid detection and quantification
CN105890722A (en) * 2016-06-13 2016-08-24 常州大学 Method for measuring DNA molecular mass according to resonance principle

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020197611A1 (en) * 2001-06-21 2002-12-26 Chagovetz Alexander Michael Method for real-time detection and quantification of nucleic acid sequences using fluorescent primers
US20100069250A1 (en) * 2008-08-16 2010-03-18 The Board Of Trustees Of The Leland Stanford Junior University Digital PCR Calibration for High Throughput Sequencing
US20140186827A1 (en) * 2010-05-14 2014-07-03 Fluidigm, Inc. Assays for the detection of genotype, mutations, and/or aneuploidy
EP2599879A1 (en) * 2011-11-30 2013-06-05 Agilent Technologies, Inc. A quantitative PCR-based method to predict the efficiency of target enrichment for next-generation sequencing using repetitive DNA elements (lines/sines) as negative controls

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
See also references of WO2018190814A1 *

Also Published As

Publication number Publication date
EP3610031A1 (en) 2020-02-19
JP6983906B2 (en) 2021-12-17
JP2020516274A (en) 2020-06-11
CN110582577A (en) 2019-12-17
WO2018190814A1 (en) 2018-10-18

Similar Documents

Publication Publication Date Title
EP3718370A4 (en) Methods and related devices for multi-connectivity
EP3625358A4 (en) Biomarkers and uses thereof
EP3592284A4 (en) Humidity-management packaging systems and methods
EP3548456A4 (en) Ethylene-to-liquids systems and methods
EP3886737A4 (en) Histotripsy systems and methods
EP3587419A4 (en) Fgfr inhibitor and application thereof
EP3281942A4 (en) B-lactamase inhibitor and application thereof
EP3655873A4 (en) Systems and methods for blockchain-dependent operation sets
EP3511407A4 (en) Christensenella intestinihominis and application thereof
EP3619674A4 (en) Systems and methods for scenario simulation
EP3392534A4 (en) Electronic expansion valve and spool thereof
EP3612978A4 (en) Systems and methods for encoder-guided adaptive-quality rendering
EP3624797A4 (en) Kinase inhibitors and uses thereof
EP3688714A4 (en) Data ingestion systems and methods
EP3703196A4 (en) Connector and connector assembly
EP3719050A4 (en) Compound and tablet
EP3692008A4 (en) Biocementation methods and systems
EP3677017A4 (en) Enhanced calling systems and methods
AU2018297217A1 (en) Methods and devices for transcarotid access
EP3683303A4 (en) Megamonas funiformis and applications thereof
EP3364072A4 (en) Actuator and structure comprising same
EP3349849A4 (en) Deployment devices and related assemblies and methods
EP3359151A4 (en) Crmp2 sumoylation inhibitors and uses thereof
EP3729351A4 (en) Fast and partition-resilient blockchains
EP3724518A4 (en) Furniture and assembly method

Legal Events

Date Code Title Description
STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE

PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

Free format text: ORIGINAL CODE: 0009012

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE

17P Request for examination filed

Effective date: 20191108

AK Designated contracting states

Kind code of ref document: A1

Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR

AX Request for extension of the european patent

Extension state: BA ME

DAV Request for validation of the european patent (deleted)
DAX Request for extension of the european patent (deleted)
A4 Supplementary search report drawn up and despatched

Effective date: 20201019

RIC1 Information provided on ipc code assigned before grant

Ipc: C07H 21/04 20060101ALI20201013BHEP

Ipc: C12P 19/34 20060101ALI20201013BHEP

Ipc: C12N 15/10 20060101ALI20201013BHEP

Ipc: C12Q 1/68 20180101AFI20201013BHEP

Ipc: C40B 30/04 20060101ALI20201013BHEP

Ipc: C40B 30/10 20060101ALI20201013BHEP

RAP3 Party data changed (applicant data changed or rights of an application transferred)

Owner name: TECAN GENOMICS, INC.

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: EXAMINATION IS IN PROGRESS

17Q First examination report despatched

Effective date: 20230112

P01 Opt-out of the competence of the unified patent court (upc) registered

Effective date: 20230519