EP1124992A4 - Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns - Google Patents

Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns

Info

Publication number
EP1124992A4
EP1124992A4 EP99971047A EP99971047A EP1124992A4 EP 1124992 A4 EP1124992 A4 EP 1124992A4 EP 99971047 A EP99971047 A EP 99971047A EP 99971047 A EP99971047 A EP 99971047A EP 1124992 A4 EP1124992 A4 EP 1124992A4
Authority
EP
European Patent Office
Prior art keywords
classification
methods
gene expression
expression patterns
enhance detection
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP99971047A
Other languages
German (de)
French (fr)
Other versions
EP1124992A1 (en
Inventor
Stephen H Friend
Roland Stoughton
Yudong He
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Rosetta Inpharmatics LLC
Original Assignee
Rosetta Inpharmatics LLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/179,569 external-priority patent/US6203987B1/en
Priority claimed from US09/220,275 external-priority patent/US6950752B1/en
Application filed by Rosetta Inpharmatics LLC filed Critical Rosetta Inpharmatics LLC
Publication of EP1124992A1 publication Critical patent/EP1124992A1/en
Publication of EP1124992A4 publication Critical patent/EP1124992A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30—Unsupervised data analysis
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
EP99971047A 1998-10-27 1999-10-27 Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns Withdrawn EP1124992A4 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US179569 1994-01-07
US09/179,569 US6203987B1 (en) 1998-10-27 1998-10-27 Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns
US09/220,275 US6950752B1 (en) 1998-10-27 1998-12-23 Methods for removing artifact from biological profiles
US220275 1998-12-23
PCT/US1999/025025 WO2000024936A1 (en) 1998-10-27 1999-10-27 Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns

Publications (2)

Publication Number Publication Date
EP1124992A1 EP1124992A1 (en) 2001-08-22
EP1124992A4 true EP1124992A4 (en) 2006-09-06

Family

ID=26875445

Family Applications (1)

Application Number Title Priority Date Filing Date
EP99971047A Withdrawn EP1124992A4 (en) 1998-10-27 1999-10-27 Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns

Country Status (11)

Country Link
EP (1) EP1124992A4 (en)
JP (1) JP2002528095A (en)
KR (1) KR20010081098A (en)
AU (1) AU773456B2 (en)
BR (1) BR9914913A (en)
CA (1) CA2348837A1 (en)
HU (1) HUP0104050A2 (en)
IL (1) IL142840A0 (en)
IS (1) IS5929A (en)
NO (1) NO20012036L (en)
PL (1) PL347495A1 (en)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9183349B2 (en) 2005-12-16 2015-11-10 Nextbio Sequence-centric scientific information management
US9141913B2 (en) 2005-12-16 2015-09-22 Nextbio Categorization and filtering of scientific data
WO2007075488A2 (en) 2005-12-16 2007-07-05 Nextbio System and method for scientific information knowledge management
SG196843A1 (en) * 2009-01-19 2014-02-13 Sistemic Scotland Ltd Methods employing non-coding rna expression assays
JP5133368B2 (en) * 2010-05-30 2013-01-30 株式会社 ワールドフュージョン Expression data prediction system
WO2015198620A1 (en) * 2014-06-23 2015-12-30 オリンパス株式会社 Tissue mapping method
CN111507649B (en) * 2020-06-30 2020-11-27 上海竞动科技有限公司 Financial big data wind control platform based on block chain

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
No Search *

Also Published As

Publication number Publication date
PL347495A1 (en) 2002-04-08
IS5929A (en) 2001-04-27
CA2348837A1 (en) 2000-05-04
NO20012036L (en) 2001-06-25
AU773456B2 (en) 2004-05-27
BR9914913A (en) 2001-10-16
JP2002528095A (en) 2002-09-03
IL142840A0 (en) 2002-03-10
EP1124992A1 (en) 2001-08-22
NO20012036D0 (en) 2001-04-25
HUP0104050A2 (en) 2002-03-28
KR20010081098A (en) 2001-08-27
AU1451700A (en) 2000-05-15

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Effective date: 20060804

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Owner name: ROSETTA INPHARMATICS LLC

RIC1 Information provided on ipc code assigned before grant

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Ipc: G06F 19/00 20060101AFI20060801BHEP

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