EP0000800B1 - Selective n-protection of aminoglycosides and novel, selectively protected aminoglycoside intermediates - Google Patents

Selective n-protection of aminoglycosides and novel, selectively protected aminoglycoside intermediates Download PDF

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EP0000800B1
EP0000800B1 EP78200121A EP78200121A EP0000800B1 EP 0000800 B1 EP0000800 B1 EP 0000800B1 EP 78200121 A EP78200121 A EP 78200121A EP 78200121 A EP78200121 A EP 78200121A EP 0000800 B1 EP0000800 B1 EP 0000800B1
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tri
gentamicin
antibiotic
poly
unprotected
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EP0000800A1 (en
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John Jessen Wright
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MSD International Holdings GmbH
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Scherico Ltd
Technobiotic Ltd
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07HSUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H15/00Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
    • C07H15/20Carbocyclic rings
    • C07H15/22Cyclohexane rings, substituted by nitrogen atoms
    • C07H15/222Cyclohexane rings substituted by at least two nitrogen atoms
    • C07H15/226Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings
    • C07H15/234Cyclohexane rings substituted by at least two nitrogen atoms with at least two saccharide radicals directly attached to the cyclohexane rings attached to non-adjacent ring carbon atoms of the cyclohexane rings, e.g. kanamycins, tobramycin, nebramycin, gentamicin A2
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
    • Y02P20/00Technologies relating to chemical industry
    • Y02P20/50Improvements relating to the production of bulk chemicals
    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Definitions

  • This invention relates to a process whereby 1,3" - di - N - unprotected - poly - N - protected-4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols are selectively protected at the 3"-amino function and to novel 1-N-unprotected-poly-N-protected - 4,6 - di - 0 - (aminoglycosyl) - 1,3-diaminocyclitols.
  • the compounds are useful as intermediates in the preparation of 1-N-substituted - 4,6 - di - 0 - (aminoglycosyl) - 1,3-diaminocyclitols, very potent antibacterial agents such as netilmicin (1-N-ethylsisomicin).
  • U.S. Patent No. 4,002,742 describes a multistep method whereby 4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitols are converted to certain 1-N-unprotected-poly-N-protected-4,6-di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols which are disclosed as intermediates in the preparation of 1-N-alkylated derivatives.
  • 74-23811 describes the per-N-formylation of an aminoglycoside which is further reacted to produce a 1-N-unprotected - poly - N - formylated aminoglycoside which can be further reacted to produce a 1-N-substituted aminoglycoside.
  • the process of this invention resides in the concept of the selective protection of a 3"- amino function in a 1,3"-di-N-unprotected- poly-N-protected-4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol, wherein the 6-O-aminoglycosyl has an amino function at the 3" position and hydroxyl functions at the 2" and 4" positions, and is characterised in that the 1,3" - di - N - unprotected - poly - N - protected-4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol is reacted in a solvent with no more than one molar equivalent of available 1-Z-imidazole, wherein Z is an amino protecting group selected from lower alkanoyl, lower alkoxycarbonyl, aralkoxycarbonyl, trichloroethoxycarbonyl and N-carbonylim
  • aminoglycoside refers to a 4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol
  • per-N-protection refers to protection on all the amino functions of an aminoglycoside
  • poly-N-protection refers to protection on all amino functions unless otherwise excluded as, for instance, the terminology 1,3"-di-N-unprotected-poly-N-protected.
  • the present invention provides such ideally protected intermediates for the production of 1-N-substituted aminoglycosides with increased yields.
  • the French Patent No. 74-23811 describes a method whereby, for example, kanamycin B is formylated to 1,3,2',6',3"-penta-N-formylated kanamycin B, thence treated with base to produce 3.2',6',3" - tetra - N - formylated kanamycin B.
  • the aforementioned process is, however, restricted to the preparation of formyl derivatives, and is such that the product is produced in low yields (15-25%).
  • the process of this invention utilizes as starting compounds 1,3"-di-N-unprotected- poly-N-protected aminoglycosides which are prepared by using a transition-metal (e.g. copper) complexing process, said process being described in German Offenlegungsschrift (DOS) 2726712.
  • a transition-metal e.g. copper
  • Example 3 wherein 1,3"-diN - unprotected - 3,2',6' - tri - N - (trichloroethoxycarbonyl) sisomicin is reacted with N-acet- oxysuccinimide, deblocked at the 3,2',6'-amino functions to produce 1-N-acetylsisomicin.
  • the 1-Z-imidazole is a compound wherein Z is an amino protecting group which is lower alkanoyl (acetyl, propionyl, butyryl, trifluoroacetyl), lower alkoxycarbonyl (ethoxycarbonyl, t - butoxycarbonyl, trichloroethoxycarbonyl), aralkoxycarbonyl (benzyloxycarbonyl) and N-carbonylimidazole.
  • 1-Z-imidazole is preferentially 1-lower alkanoylimidazole, 1-acetylimidazole being the most preferred.
  • the 1-Z imidazoles are a known class of compounds. Those which are not readily available are conveniently prepared by reaction of imidazole with the appropriate acyl chloride or chloroformate.
  • the 1,3"-di-N-unprotected- poly-N-protected aminoglycoside is allowed to react with a 1-Z-imidazole in an inert organic solvent, water and/or lower alkanol at ambient temperatures for a period of from about 0.5-24 hours.
  • the 1-N-unprotected- poly-N-protected aminoglycoside is obtained.
  • 3,2',6'-tri-N-acetylsisomicin is reacted with acetylimidazole in a water/tetra- hydrofuran mixture at room temperature for about 2 hours, then isolated utilizing known techniques to obtain 3,2',6',3"-tetra-N-acetylsisomicin.
  • the inert organic solvents employed in this process are usually water miscible and will not take part in the reaction, e.g. tetrahydrofuran, dioxane, dimethoxyethane, dimethylformamide and acetonitrile. In the instances where inert organic solvents are utilized alone, the ratio of the imidazole to the aminoglycoside is about equimolar.
  • the molar ratio of the imidazole to the aminoglycoside should be up to 2:1, as the water/lower alkanol solvents will partially react with the imidazole compounds.
  • the ambient temperature utilized in this reaction can be from 5°C to about 40°C.
  • the reaction is generally a rapid one, from about 0.5-2 hours but can be run over a longer period of time, up to about 24 hours.
  • a preferred group of starting materials are 1 ,3" - di - N - unprotected - poly - N - protected gentamicin A, gentamicin B, gentamicin B 1 , gentamicin C 1 , gentamicin C 1a , gentamicin C Z , gentamicin C za , gentamicin C lb , gentamicin X 2 , Antibiotic G-52, Antibiotic 66--40B, Antibiotic 66-40D, Antibiotic G-418, Antibiotic JI-20A, Antibiotic JI-20B, kanamycin A, kanamycin B, 3',4'-dideoxykanamycin B, verdamicin, sisomicin, tobramycin and the 5- epi, 5-deoxy, 5-epi-fluoro-5-deoxy analogs of the foregoing. 3,2',6'-tri-N-acetylsisomicin and 3,6'-di-N-
  • the 5-epi, 5-deoxy-, 5-epi-fluoro-5-deoxy- analogs are best prepared prior to the introduction of amino protecting groups.
  • the preparation of 5-epi-aminoglycosides is described in U.S. Patent 4,000,261 and the preparation of 5-deoxy-aminoglycosides is described in U.S. Patent 4,053,591.
  • the 5-epi-fluoro-5-deoxy aminoglycosides are prepared by reacting an aminoglycoside having a 5-hydroxyl function (e.g. sisomicin) and having all its amino and hydroxyl functions protected, other than the 5-hydroxyl function, with a dialkylaminosulfur trifluoride (e.g. diethylaminosulfur trifluoride) in an inert organic solvent in the temperature range of from - 100°C to about - 50°C, followed by removal of the protecting groups (c.f. Example 4).
  • a 5-hydroxyl function e.g. sisomicin
  • a dialkylaminosulfur trifluoride e.g. diethylaminosulfur trifluoride
  • this invention relates to novel 1 - N - unprotected - poly - N - protected aminoglycosides. Particularly, this invention relates to novel 1 - N - unprotected - poly - N -R 3" - -N -Z' - 4,6 - di - O - (aminoglycosyl) - 1,3 - diaminocyclitols, selected from
  • kanamycin A and sisomicin represent a preferred range of compounds.
  • both R and Z' be lower alkanoyl, preferentially acetyl.
  • Particularly valuable compounds of this invention are 3,2',6',3"-tetra-N-acetylsisomicin, which compound is used to obtain 1-N-ethylsisomicin and 3,6',3"-tri-N-acetylkanamycin A.
  • lower as used herein for defining protecting groups R, Z and Z' comprises such radicals having up to six carbon atoms.

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Description

  • This invention relates to a process whereby 1,3" - di - N - unprotected - poly - N - protected-4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols are selectively protected at the 3"-amino function and to novel 1-N-unprotected-poly-N-protected - 4,6 - di - 0 - (aminoglycosyl) - 1,3-diaminocyclitols. The compounds are useful as intermediates in the preparation of 1-N-substituted - 4,6 - di - 0 - (aminoglycosyl) - 1,3-diaminocyclitols, very potent antibacterial agents such as netilmicin (1-N-ethylsisomicin).
  • U.S. Patent No. 4,002,742 describes a multistep method whereby 4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitols are converted to certain 1-N-unprotected-poly-N-protected-4,6-di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols which are disclosed as intermediates in the preparation of 1-N-alkylated derivatives. French Patent No. 74-23811 describes the per-N-formylation of an aminoglycoside which is further reacted to produce a 1-N-unprotected - poly - N - formylated aminoglycoside which can be further reacted to produce a 1-N-substituted aminoglycoside.
  • By this invention, a novel chemical process was developed whereby a 4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol, also known herein as an aminoglycoside, is converted to a 1 - N - unprotected - poly - N - protected aminoglycoside, many of which were heretofore unknown and could not be prepared by prior art processes.
  • The process of this invention resides in the concept of the selective protection of a 3"- amino function in a 1,3"-di-N-unprotected- poly-N-protected-4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol, wherein the 6-O-aminoglycosyl has an amino function at the 3" position and hydroxyl functions at the 2" and 4" positions, and is characterised in that the 1,3" - di - N - unprotected - poly - N - protected-4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol is reacted in a solvent with no more than one molar equivalent of available 1-Z-imidazole, wherein Z is an amino protecting group selected from lower alkanoyl, lower alkoxycarbonyl, aralkoxycarbonyl, trichloroethoxycarbonyl and N-carbonylimidazole. Thereby are produced 1-N - unprotected - poly - N - protected - 4,6 - di-O-(aminoglycosyl)-1,3-diaminocyclitols, said compounds being useful as intermediates in the preparation of 1-N-substituted aminoglycosides.
  • As used herein, the term "aminoglycoside" refers to a 4,6-di-O-(aminoglycosyl)-1,3-diaminocyclitol, "per-N-protection" refers to protection on all the amino functions of an aminoglycoside, and "poly-N-protection" refers to protection on all amino functions unless otherwise excluded as, for instance, the terminology 1,3"-di-N-unprotected-poly-N-protected.
  • The novel process for the selective 3"-amino protection of 1,3"-di-N-unprotected-poly-N-protected aminoglycosides to produce 1-N-unprotected-poly-N-protected aminoglycosides was found in an effort to provide another process for the production of 1-N-substituted aminoglycosides, especially 1 - N - ethylsisomicin, whereby side products/reactions are minimized.
  • Chemical transformation on an aminoglycoside wherein the site of reaction is to be one of the amino functions should ideally be carried out on intermediates wherein every other amino function is selectively protected by a blacking group; otherwise, mixtures of various mono-N- and poly-N-derivatives are formed which require tedious separation techniques (usually one to several column chromatographies) to isolate the desired transformation product. However, by the prior art methods, it is not always possible to prepare the ideal selectively blocked intermediate, so that with any of the amino functions unprotected, multiple products are produced, and the desired transformation product is therefore obtained in low yields.
  • The present invention provides such ideally protected intermediates for the production of 1-N-substituted aminoglycosides with increased yields.
  • In U.S. Patent 4,002,742, which relates to
  • the production of 1-N-substituted aminoglycosides, there is described a multistep method for preparing a 1-N-unprotected-poly-N-protected aminoglycoside, the sequence of steps being as follows: Sisomicin is converted to:
    • a) Penta - N - carbobenzyloxysisomicin -
    • b) 1,3',2',6' - tetra - N - carbobenzyloxy - 3" - N - 4" - 0 - carbonylsisomicin -
    • c) 3" - N - 4" - 0 - carbonylsisomicin
    • d) 2',3',6' - tri - N - t - butoxycarbonyl - 3" - N - 4" - 0 - carbonylsisomicin.
  • The aforementioned process produces the product in inherently low yields. Furthermore, this process cannot produce the N-alkanoyl protected compounds claimed in this invention.
  • The French Patent No. 74-23811 describes a method whereby, for example, kanamycin B is formylated to 1,3,2',6',3"-penta-N-formylated kanamycin B, thence treated with base to produce 3.2',6',3" - tetra - N - formylated kanamycin B. The aforementioned process is, however, restricted to the preparation of formyl derivatives, and is such that the product is produced in low yields (15-25%).
  • In view of the heretofore inherent problems in blocking all the amino groups, regardless of configuration, other than the 1-N-position in an aminoglycoside, it has been the practice to block some of the amino functions (keeping 1 unblocked), then introduce the 1-N-substituent. Of course, inherent in this is the possibility of getting a multiplicity of compounds wherein substitution has taken place at every unblocked amino function.
  • The process of this invention utilizes as starting compounds 1,3"-di-N-unprotected- poly-N-protected aminoglycosides which are prepared by using a transition-metal (e.g. copper) complexing process, said process being described in German Offenlegungsschrift (DOS) 2726712.
  • Heretofore, if the aforementioned 1,3"-di-N-unprotected - poly. - N - protected - aminoglycosides were further acylated by the prior art methods, it would be expected that the 1-amino function would be preferentially acylated, not the 3"-amino function since the 1 amino function is primary and less hindered than the 3"-amino function, the latter having neighboring 2" and 4"-hydroxyl functions, and in the case of aminoglycosides such as sisomicin and gentamicin, being a secondary amine. Indeed this is illustrated in Example 3 wherein 1,3"-diN - unprotected - 3,2',6' - tri - N - (trichloroethoxycarbonyl) sisomicin is reacted with N-acet- oxysuccinimide, deblocked at the 3,2',6'-amino functions to produce 1-N-acetylsisomicin.
  • By this invention it was found that in a 1,3"- di - N - unprotected - poly - N - protected aminoglycoside, the 3"-N-position can preferentially be protected by means of 1-Z-imidazole, this reaction taking place cleanly and in good yields. The 1-Z-imidazole is a compound wherein Z is an amino protecting group which is lower alkanoyl (acetyl, propionyl, butyryl, trifluoroacetyl), lower alkoxycarbonyl (ethoxycarbonyl, t - butoxycarbonyl, trichloroethoxycarbonyl), aralkoxycarbonyl (benzyloxycarbonyl) and N-carbonylimidazole. In this invention, 1-Z-imidazole is preferentially 1-lower alkanoylimidazole, 1-acetylimidazole being the most preferred.
  • The 1-Z imidazoles are a known class of compounds. Those which are not readily available are conveniently prepared by reaction of imidazole with the appropriate acyl chloride or chloroformate.
  • By this process the 1,3"-di-N-unprotected- poly-N-protected aminoglycoside is allowed to react with a 1-Z-imidazole in an inert organic solvent, water and/or lower alkanol at ambient temperatures for a period of from about 0.5-24 hours. Using separation techniques described hereinafter, the 1-N-unprotected- poly-N-protected aminoglycoside is obtained. For example, 3,2',6'-tri-N-acetylsisomicin is reacted with acetylimidazole in a water/tetra- hydrofuran mixture at room temperature for about 2 hours, then isolated utilizing known techniques to obtain 3,2',6',3"-tetra-N-acetylsisomicin.
  • The inert organic solvents employed in this process are usually water miscible and will not take part in the reaction, e.g. tetrahydrofuran, dioxane, dimethoxyethane, dimethylformamide and acetonitrile. In the instances where inert organic solvents are utilized alone, the ratio of the imidazole to the aminoglycoside is about equimolar.
  • When the reaction is carried out in a solvent containing water and/or lower alkanol (wherein the lower alkanol has up to 4 carbon atoms), the molar ratio of the imidazole to the aminoglycoside should be up to 2:1, as the water/lower alkanol solvents will partially react with the imidazole compounds.
  • The ambient temperature utilized in this reaction can be from 5°C to about 40°C. The reaction is generally a rapid one, from about 0.5-2 hours but can be run over a longer period of time, up to about 24 hours.
  • When, in this process 1-Z-imidazole is utilized wherein Z is lower alkanoyl, the lower alkanoyl protects only the 3"-N-position. However, when Z is other than lower alkanoyl, the protecting group will bridge the 3"-N and 4" - 0 - positions to become a 3",4" - N,O-carbonyl moiety. When gentamicin A, Antibiotic 66―40B, kanamycin A, kanamycin B, 3',4'-dideoxykanamycin B and tobramycin are utilized, a mixture will be obtained wherein bridging will occur not only at the 3"-N and 4"-O-positions, but also at the 3"-N and 2"-0- positions.
  • A preferred group of starting materials are 1 ,3" - di - N - unprotected - poly - N - protected gentamicin A, gentamicin B, gentamicin B1, gentamicin C1, gentamicin C1a, gentamicin CZ, gentamicin Cza, gentamicin Clb, gentamicin X2, Antibiotic G-52, Antibiotic 66--40B, Antibiotic 66-40D, Antibiotic G-418, Antibiotic JI-20A, Antibiotic JI-20B, kanamycin A, kanamycin B, 3',4'-dideoxykanamycin B, verdamicin, sisomicin, tobramycin and the 5- epi, 5-deoxy, 5-epi-fluoro-5-deoxy analogs of the foregoing. 3,2',6'-tri-N-acetylsisomicin and 3,6'-di-N-acetylkanamycin A are specifically useful compounds.
  • The 5-epi, 5-deoxy-, 5-epi-fluoro-5-deoxy- analogs are best prepared prior to the introduction of amino protecting groups. The preparation of 5-epi-aminoglycosides is described in U.S. Patent 4,000,261 and the preparation of 5-deoxy-aminoglycosides is described in U.S. Patent 4,053,591.
  • The 5-epi-fluoro-5-deoxy aminoglycosides (e.g. 5 - epi - fluoro - 5 - deoxysisomicin) are prepared by reacting an aminoglycoside having a 5-hydroxyl function (e.g. sisomicin) and having all its amino and hydroxyl functions protected, other than the 5-hydroxyl function, with a dialkylaminosulfur trifluoride (e.g. diethylaminosulfur trifluoride) in an inert organic solvent in the temperature range of from - 100°C to about - 50°C, followed by removal of the protecting groups (c.f. Example 4).
  • The preparation of 1-N-substituted aminoglycosides, for which the compounds of this Invention are useful as intermediates, are described in U.S. Patent 4,002,742. It has been found, however, that when utilizing a 1-N-unprotected-poly-N-acylaminoglycoside (e.g. 3,2',6',3" - tetra - N - acetylsisomicin) for conversion to a 1-N-ethylaminoglycoside (e.g. 1-N-ethylsisomicin), a convenient hydride donor reducing agent to be employed is sodium borohydride.
  • In its product aspect, this invention relates to novel 1 - N - unprotected - poly - N - protected aminoglycosides. Particularly, this invention relates to novel 1 - N - unprotected - poly - N -R 3" - -N -Z' - 4,6 - di - O - (aminoglycosyl) - 1,3 - diaminocyclitols, selected from
    • 3,2' - di N - R - 3" - N - Z' - gentamicin A,
    • 3,6' - di - N - R - 3" - N - Z' - gentamicin B,
    • 3,6' - di - N - R - 3" - N - Z' - gentamicin B,,
    • 3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C1,
    • 3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C1a,
    • 3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2,
    • 3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2a,
    • 3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2b,
    • 3,2' - di - N - R - 3" - N - Z' - gentamicin X2,
    • 3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic G-52,
    • 3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic 66-40B,
    • 3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic 66-40D,
    • 3,2' - di - N - R - 3" - N - Z' - Antibiotic G-418,
    • 3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic JI-20A,
    • 3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic JI-20B,
    • 3,6' - di - N - R - 3" - N - Z' - kanamycin A,
    • 3,2',6' - tri - N - R - 3" - N - Z' - kanamycin B,
    • 3,2',6' - tri - N - R - 3" - N - Z' - 3',4' - dideoxykanamycin B,
    • 3,2',6' - tri - N - R - 3" - N - Z' - verdamicin,
    • 3,2',6' -tri N - R - 3" - N -Z' -sisomicin,
    • 3,2',6' - tri - N - R - 3" - N - Z' - tobramycin, and

    the 5-epi, 5-deoxy, 5-epi-fluoro-5-deoxy analogs of the foregoing, wherein R is lower alkanoyl, aroyl, lower alkoxycarbonyl, trichloroethoxycarbonyl, aralkoxycarbonyl, and Z' is lower alkanoyl with at least two carbon atoms.
  • Of these the derivatives of gentamicins B, B, and C1a, kanamycin A and sisomicin represent a preferred range of compounds.
  • The definitions of the protecting groups have been described hereinabove in more detail. Specifically, preferred is that both R and Z' be lower alkanoyl, preferentially acetyl.
  • Particularly valuable compounds of this invention are 3,2',6',3"-tetra-N-acetylsisomicin, which compound is used to obtain 1-N-ethylsisomicin and 3,6',3"-tri-N-acetylkanamycin A.
  • The term "lower" as used herein for defining protecting groups R, Z and Z' comprises such radicals having up to six carbon atoms.
  • The following Examples illustrate the invention:
  • Example 1 1 - N - Unsubstituted - poly - N - protected - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols A. 3,2',6',3" - tetra - N - acetylsisomicin
  • To a solution of 3 g (5.2 mmol) 3,2',6'-tri-N-acetylsisomicin in 150 ml of water, add 572 mg (5.2 mmol) of 1-acetylimidazole in 8 ml of tetrahydrofuran. Stir the solution at room temperature for 30 minutes and then add 572 mg (5.2 mmol) of acetylimidazole. Stir the solution a further 2 hours and then evaporate off the solvent and chromatograph the residue on 150 g of silica gel, eluting with the lower phase of a chloroform - methanol - 15% ammonium hydroxide (2:1:1) solvent mixture to obtain 3,2',6',3" - tetra - N - acetylsisomicin (1.96 g, 61% yield) [a]2g + 204° (H20): δ(D2O) 1.05 (rotamers, C-CH3), 2.25, 2.05, 1.95 (12H, COCH3), 3.1, 3.0 (3H, rotamers, N-CH3), 4.85 (1H, m, H-4'), 5.3 (1 H, m, H-1", J = 4 Hz) and 5.5 ppm (1 H, d, J = 2 Hz, H-,,).
  • B. 3,6',3"-Tri-N-acetylkanamycin A
  • (1) Dissolve 300 mg of kanamycin A and 1.9 g of cupric acetate hydrate in 13.5 ml of dimethylformamide and 4 ml of water and stir the mixture at 25°C for 30 minutes, Then add 0.17 g of acetic anhydride in 2 ml of dimethylformamide and stir for 1 hour at 25°C. Bubble hydrogen sulfide through the solution, filter off the solids and wash with dimethylformamide. Evaporate the filtrate to dryness and chromatograph the residue on a silica gel column (110 × 2.5 cm) using chloroform-methanol-3.5% ammonium hydroxide (1:2:1) as the eluant to obtain 3,6'-di-N-acetylkanamycin A (130 mg, 37% yield); [α]26 D + 94.6° (H20): [θ]290 + 1002 (TaCu): δ (D2O) 2.05 (3H, s, NAc), 2.08 (3H, s, NAc), 5.13 (1H, m, H,,,) and 5.41 ppm (1H, m, H,,).
  • (2) To a solution of 100 mg of 3,6'-di-N-acetylkanamycin A in 10 ml of (1:1) tetrahydrofuran-water, add 29.1 mg of acetylimidazole and stir the mixture at 25°C for 23 hours. Evaporate the solution to dryness and chromatograph the residue on a silica gel column (110 × 1.5 cm) using chloroform-methanol-3.5% ammonium hydroxide (1:2:1) as the eluant to obtain 3,6',3"-tri-N-acetylkanamycin A (41 mg, 38% yield): [α]26 D + 104.7° (H20): 8(D20) 2.02 (3H, s, NAc), 2.07 (3H, s, NAc), 2.09 (3H, s, NAc), 5.17 (1H, d, J1", 2", 3.5 HZ, H1"), and 5.41 ppm (1 H, d, J1', 2', 3.0 Hz, H1').
  • C. 1 - N - unsubstituted - poly - N - acetyl - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols
  • In a manner similar to Example 1A, by utilizing as starting compounds
    • a) 3,2' - di - N - acetylgentamicin A,
    • b) 3,6' - di - N - acetylgentamicin B,
    • c) 3,6' - di - N - acetylgentamicin B,,
    • d) 3,2',6' - tri - N - acetylgentamicin C,,
    • e) 3,2',6' - tri - N - acetylgentamicin C1a,
    • f) 3,2',6' - tri - N - acetylgentamicin C2,
    • g) 3,2',6' - tri - N - acetylgentamicin C2a,
    • h) 3,2',6' - tri - N - acetylgentamicin C2b,
    • i) 3,2' - di - N - acetylgentamicin X2,
    • j) 3,2',6' - tri - N - acetyl Antibiotic G-52,
    • k) 3,2',6' - tri - N - acetyl Antibiotic 66-40B,
    • I) 3,2',6' - tri - N - acetyl Antibiotic 66-40D.
    • m) 3,2' - di - N - acetyl Antibiotic G-418,
    • n) 3,2',6' - tri - N - acetyl Antibiotic JI-20A,
    • o) 3,2',6' - tri - N - acetyl Antibiotic JI-20B,
    • p) 3,2',6' -tri-N-acetylkanamycin B,
    • q) 3,2',6' - tri - N - acetyl - 3',4' - dideoxykanamycin B,
    • r) 3,2',6' - tri - -N- acetylverdamicin,
    • s) 3,2',6' - tri - N - acetyltobramycin, and
    • t) the 5 - epi, 5 - deoxy, 5 - epi - fluoro - 5 - deoxy analogs of the foregoing and of 3,2',6' - tri - N - acetylsisomicin and 3,6' - di - N - acetylkanamycin A there are obtained respectively:
      • a) 3,2',3" - tri - N - acetylgentamicin A,
      • b) 3,6',3" - tri - N - acetylgentamicin B,
      • c) 3,6',3" - tri - N - acetylgentamicin B,,
      • d) 3,2',6',3" - tetra - N - acetylgentamicin C1,
      • e) 3,2',6',3" - tetra - N - acetylgentamicin C1a,
      • f) 3,2',6',3" - tetra - N - acetylgentamicin C2,
      • g) 3,2',6',3" - tetra - N - acetylgentamicin C2a,
      • h) 3,2',6',3" - tetra - N - acetylgentamicin C2b,
      • i) 3,2',3" - tri - N - acetylgentamicin X2,
      • j) 3,2',6',3" - tetra - N - acetyl Antibiotic G-52,
      • k) 3,2',6',3" - tetra - N - acetyl Antibiotic 66-40B,
      • I) 3,2',6',3" - tetra - N - acetyl Antibiotic 66-40D,
      • m) 3,2',3" - tri - N - acetyl Antibiotic G-418,
      • n) 3,2',6',3" - tetra - N - acetyl Antibiotic JI-20A,
      • o) 3,2',6',3" - tetra - N - acetyl Antibiotic JI-20B,
      • p) 3,2',6',3" - tetra - N - acetylkanamycin B,
      • q) 3,2',6',3" - tetra - N - acetyl - 3',4' - dideoxykanamycin B,
      • r) 3,2',6',3" - tetra - N - acetylverdamicin,
      • s) 3,2',6',3" - tetra - N - acetyltobramycin, and
      • t) the 5 - epi, 5 - deoxy, 5 - epi - fluoro - 5 - deoxy analogs of the foregoing and of 3,2',6',3" - tetra - N - acetylsisomicin, and of 3,6',3" - tri - N - acetylkanamycin A.
    D. 3,2',6' - Tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - acetylgentamicin C1a
  • Dissolve 500 mg of 3,2',6'-tri-N-(2,2,2-trichloroethoxycarbonyl)-gentamicin C1a in 20 ml (1:1) tetrahydrofuran and water. Add 84.6 mg of acetyl imidazole dissolved in 4 ml tetrahydrofuran. Stir the solution at room temperature for 2 hours. Evaporate the tetrahydrofuran and decant off the remaining water. Dissolve the resultant residue in a small amount of chloroform and wash with water. Evaporate the chloroform and azeotrope the resultant residue with benzene. Chromatograph the azeotroped resultant residue on a silica gel column (30 x 3 cm) eluting with 10% methanol/chloro- form. Combine the fractions to obtain 3,2',6'-tri-N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - acetyl gentamicin C1a (428 mg, 82% yield); [α]26 D + 69.9° (CHCl3); v max. (KBr) 1720, 1620 cm. -1: 8 (CDCl3) 1.08 (3H, s, 4"-CH3), 2.16 (3H, s, NAc), 3.12 (3H, s, 3"―N―CH3) and 4.76 ppm (6H, s, CO2CH2CCl3).
  • E. 3,2',6' - Tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonyl- gentamicin C1a.
  • (1) Dissolve 20 g of imidazole in 180 ml of tetrahydrofuran; cool the resultant solution to 0°C. To this solution, add 31g of 2,2,2-tri- chloroethylchloroformate in 180 ml of tetrahydrofuran dropwise over a period of 1 hour. Then stir the mixture at 25°C for 1 hour, filter the mixture and concentrate the filtrate to dryness. Wash the resultant solid with water and dry to obtain 1-N-(2,2,2-trichloroethoxycarbonyl) - imidazole: m.p. = 80°C: v max. (CHCl3) 3000, 1780, 1400, 1310, 1280, 1235, 1165, 1015 cm -1: δ (CDCl3) 5.03 (2H, s, -CH2CCl3), 7.13 (1H, m, H4), 7.48 (1H, m, H5) and 8.20 ppm (1 H, s, H2).
  • (2) To a solution of 500 mg of 3,2',6'-tri-N-(2,2,2-trichloroethoxycarbonyl)-gentamicin C1a in 10 ml of anhydrous tetrahydrofuran, add 624 mg of 1 - N - (2,2,2 - trichloroethoxycarbonyl)-imidazole and then allow the solution to remain at 25°C for 24 hours. Evaporate the solution, dissolve the residue in ethyl acetate and wash with water, then dry the ethyl acetate layer over MgS04. Filter the ethyl acetate layer, evaporate to dryness and chromatograph the residue on a silica gel column (110 x 2.5 cm) using 4% methanol in chloroform as the eluant to obtain 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonyl- gentamicin C1a (290 mg, 56% yield) [α]26 D + 78.7° (CHCl3), v max. (KBr) 3375,2940, 1730, 1520 cm -1: 8 (CDCL3) 1.38 (3H, s, 4"―CH3), 2.98 (3H, s, 3"-NCH3), 4.77 (6H, broad s, ―CH2CCl3), 5.08 (1H, m, H1"), and 5.43 ppm (1 H, m, H,,).
  • F. 1 - n - unsubstituted - 3" - N - 4" - 0 - carbonyl - poly - N - (2,2,2 - trichloroethoxycarbonyl) - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols
  • In a manner similar to Example 1 E there are obtained the following compounds, respectively:
    • a) 3,6' - di - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl- gentamicin B,
    • b) 3,6' - di - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl- gentamicin B1,
    • c) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonylgentamicin C1,
    • d) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonylgentamicin C2,
    • e) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonylgentamicin C2a,
    • f) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonylgentamicin C2b,
    • g) 3,2' - di - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonyl- gentamicin X2,
    • h) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl Antibiotic G-52,
    • i) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonyl Antibiotic 66-40D,
    • j) 3,2' - di - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl Antibiotic G―418,
    • k) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl Antibiotic JI-20A,
    • I) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonyl Antibiotic JI-20B,
    • m) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - 0 - carbonylsisomicin,
    • n) 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonylverdamicin, and
    • the 5 - epi, 5 - deoxy, 5 - epi - fluoro - 5 - deoxy analogs of the foregoing and of 3,2',6' - tri - N - (2,2,2 - trichloroethoxycarbonyl) - 3" - N - 4" - O - carbonyl-
    gentamicin C1a. Example 2 1 - N - Substituted - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols A. 1-N-Ethylsisomicin
  • To a stirred solution of 40.5 g of 3,2',6',3"- tetra - N - acetylsisomicin in 500 ml of isopropanol, add 6.5 ml of acetaldehyde and 2.3 g of sodium borohydride in 100 ml of isopropanol, continue stirring for 3 hours at room temperature. After 3 hours, add water and then remove the isopropanol by evaporation. Add 150 ml of 50% sodium hydroxide to the residue and heat at 100°C for 18 hours in an argon atmosphere. Cool the solution, adjust the pH to 6 and treat the solution with 2.15 liter of IRC―50 (NH4+) ion exchange resin, wash the resin with water and elute with 2N aqueous ammonium hydroxide. Concentrate the ammoniacal eluant to dryness and dissolve the residue in the lower phase of a chloroform- isopropanol-14% ammonium hydroxide (2:1:1) solvent mixture and chromatograph on a 300 g silica gel column utilizing the same solvent to obtain 1-N-ethylsisomicin (25 gm, 80% yield).
  • B. 1 - N - Ethyl - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitols
    • 1. In a manner similar to Example 2A, by utilizing the products of Example 1A, B and C there are obtained the corresponding 1 - N - ethyl - 4,6 - di - O - (aminoglycosyl) - 1,3 - diaminocyclitols.
    • 2. In a manner similar to Example 2A, by utilizing the products of Example 1 E and F there are obtained the corresponding 1 - N - ethyl - 4,6 - di - O - (aminoglycosyl) - 1,3 - diaminocyclitols.
    Example 3 1-N-Acetylsisomicin
  • To a stirred solution of 3.0 g of 3,2',6'-tri-N-(trichloroethoxycarbonyl) sisomicin in 75 ml of methanol and 15 ml of water, add 0.55 g of N-acetoxysuccinimide. Stir the reactants for 20 hours at room temperature, then add 7 ml of acetic acid and 6 g of zinc dust and heat the mixture for 2.5 hours. Cool and filter the reaction, washing with methanol. Evaporate the filtrate and dissolve the residue in 30 ml of water, add a solution of 3 g sodium carbonate in 600 ml of water, and heat to boiling. Filter the formed salts and wash the salts with water. Evaporate the filtrate and reflux the residue with 150 ml of isopropanol. Filter, evaporate the filtrate and chromatograph the residue on 70 g of silica gel, eluting with chloroform, methanol, concentrated ammonia (3:1:0.15). Combine like eluates and evaporate and pass the residue through a column of IRA-401S (OH-) ion exchange resin, eluting with water. The eluate was lyophilized to give 1-N-acetylsisomicin identical with authentic material. (0.9 gm-60% yield).
  • Example 4 5-Epi-fluoro-5-deoxysisomicin
  • A. To a stirred solution of 4 g of 1,3,2',6' - tetra - N - benzyloxycarbonyl - 2" - 0 - benzoyl - 3",4" - N,O - carbonylsisomicin in 60 ml of dry methylene chloride at -78°C under an atmosphere of argon, add 3 ml (6 eq.) of diethylaminosulfur trifluoride (DAST). Stir the reaction mixture at -78°C for two hours and then allow to warm to 0°C. Add 50 ml of 5% sodium bicarbonate and separate the organic phase. Wash this organic phase with 50 ml water and then dry over 25 gm sodium sulfate. Evaporate the methylene chloride under vacuum. Triturate the residual yellow foam with a small volume of ether to obtain 3.6 g of 5 - epi - fluoro - 5 - deoxy - 1,3,2',6' - tetra - N- - benzyloxycarbonyl - 2" - 0 - benzoyl - 3",4" - NO - carbonylsisomicin as a white solid: m.p. =225°C.
  • B. To a solution of 4 g of 5 - epi - fluoro - 5 - deoxy - 1,3,2',6' - tetra - N - benzyloxycarbonyl - 2" - 0 - benzoyl - 3",4" - N,O - carbonylsisomicin in 5 ml of tetrahydrofuran and 60 ml liquid ammonia slowly add 2 g of sodium with stirring. Continue to stir for two hours, then add 15 ml of methanol dropwise and allow the ammonia to evaporate by warming to room temperature overnight. Dissolve the resultant residue in 10 ml 5% sodium hydroxide, and heat at 100°C for two hours under an atmosphere of argon. Cool and pass the solution through IRC-50 (H+) resin. Wash the resin with water and elute the product with 100 ml of 1N ammonium hydroxide. Concentrate the ammonium hydroxide eluates to a residue comprising 5-epi-fluoro-5-deoxysisomicin. Purify the product by chromatographing on a silica gel column eluting with the lower phase of a chloroform-methanol-15% ammonium hydroxide (2:1:1) solvent system. Combine the like eluates as determined by thin layer chromatography and lyophilize to a residue to obtain 750 mg 5-epi-fluoro-5-deoxysisomicin as a white solid: m.p. 100°C-102°C; [α]26 D +200° (MeOH); PMR (100 MHz) (D2O), 5.1 (1H, d, J=57.0 Hz, 5-H), 5.13 (1 H, d, J = 2.5 Hz, 1'―H), 5.03 (1 H, d, J = 4.0 Hz, 1"―H), 4.88 (1 H, br, s, 4'-H), 3.85 (1 H, d, J = 12.5 Hz, 5e"―H), 3.36 (1H, d, J = 12.5 Hz, 5a"―H), 2.56 (1H, d, J = 10.5 Hz, 3"-H), 2.47 (3H, s, 3"-N-CH3), 1.17 (3H, s, 4'-C-CH3).

Claims (13)

1. Process for the selective protection of a 3"-amino function in a 1,3" - di - N - unprotected - poly - N - protected - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitol, wherein the 6-0-aminoglycosyl has an amino function at the 3"-position and hydroxyl functions at the 2"- and 4"-positions, characterised in that the 1,3" - di - N - unprotected - poly - N - protected - 4,6 - di - 0 - (aminoglycosyl) - 1,3 - diaminocyclitol is reacted in a solvent with no more than one molar equivalent of available 1-Z-imidazole, wherein Z is an amino protecting group selected from lower alkanoyl, lower alkoxycarbonyl, aralkoxycarbonyl, trichloroethoxycarbonyl and N-carbonvlimidazole.
2. Process according to claim 1, characterised in that the reaction is carried out in an inert organic solvent and about equimolar amounts of reactants are used.
3. Process according to claim 1, characterised in that the reaction is carried out in a solvent containing water and/or a lower alkanol and up to two molar equivalents of 1-Z-imidazole are used.
4. Process according to any one of claims 1 to 3, characterised in that as 1-Z-imidazole is used 1-lower alkanoylimidazole.
5. Process according to any one of claims 1 to 4, characterised in that as 1-Z-imidazole is used 1-acetylimidazole.
6. Process according to any one of claims 1 to 5, characterised in that the starting compound is selected from 1,3"-di-N-unprotected-poly-N-protected gentamicin A, gentamicin B, gentamicin B,, gentamicin C1, gentamicin C1a, gentamicin C2, gentamicin C2a, gentamicin C2b, gentamicin X2, Antibiotic G-52, Antibiotic 66-40B, Antibiotic 66-40D, Antibiotic G-418, Antibiotic JI-20A, Antibiotic JI-20B, kanamycin A, kanamycin B, 3',4'-dideoxykanamycin B, verdamicin, sisomicin, tobramycin and the 5- epi, 5-deoxy, 5-epi-fluoro-5-deoxy analogs of the foregoing.
7. Process according to any one of claims 1 and 3 to 6, characterised in that two molar equivalents of 1-acetylimidazole are reacted with 3,2',6'-tri-N-acetylsisomicin in water and tetrahydrofuran.
8. Process according to any one of claims 1 and 3 to 6, characterised in that up to two molar equivalents of 1-acetylimidazole are reacted with 3,6'-di-N-acetylkanamycin A in water and tetrahydrofuran.
9. A 1 - N - unprotected - poly - N - R - 3" - N - Z' - 4,6 - di - O - (aminoglycosyl) - 1,3 - diaminocyclitol, selected from
3,2' - di - N - R - 3" - N - Z' - gentamicin A,
3,6' - di - N - R - 3" - N - Z' - gentamicin B,
3,6',di - N - R - 3" - N - Z' - gentamicin B1,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C1,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C1a,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2a,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C2b,
3,2' - di - N - R - 3" - N - Z' - gentamicin X2,
3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic G-52,
3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic 66-408,
3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic 66―40D.
3,2' - di - N - R - 3" - N - Z' - Antibiotic G-418,
3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic JI-20A,
3,2',6' - tri - N - R - 3" - N - Z' - Antibiotic JI-20B,
3,6' - di - N - R - 3" - N - Z' - kanamycin A,
3,2',6' - tri - N - R - 3" - N - Z' - kanamycin B,
3,2',6' - tri - N - R - 3" - N - Z' - 3',4' - dideoxykanamycin B,
3,2',6' - tri - N - R - 3" - N - Z' - verdamicin,
3,2',6' - tri - N -R - 3" - N - Z' - sisomicin, 3,2',6' - tri - N - R - 3" - N - Z' - tobramycin, and

the 5-epi, 5-deoxy, 5-epi-fluoro-5-deoxy analogs of the foregoing wherein R is lower alkanoyl, aroyl, lower alkoxycarbonyl, trichloroethoxycarbonyl or aralkoxycarbonyl, and Z' is lower alkanoyl with at least two carbon atoms.
10. A compound of claim 9, selected from
3,6' - di - N - R - 3" - N - Z' - gentamicin B,
3,6' - di - N - R - 3" - N - Z' - gentamicin B,,
3,2',6' - tri - N - R - 3" - N - Z' - gentamicin C1a,
3,6' - di - N - R - 3" - N - Z' - kanamycin A, and
3,2',6' - tri - N - R - 3" - N - Z' - sisomicin wherein R and Z' are as defined in claim 9.
11. A compound of claim 9 or 10, wherein R is lower alkanoyl.
12. A compound of claims 9 to 11, wherein R and Z' are acetyl.
13. 3,2',6',3" - tetra - N - acetylsisomicin and 3,6'3" - tri - N - acetylkanamycin A.
EP78200121A 1977-08-05 1978-07-31 Selective n-protection of aminoglycosides and novel, selectively protected aminoglycoside intermediates Expired EP0000800B1 (en)

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