DK1133697T3 - Method for modifying and identifying functional sites in proteins - Google Patents

Method for modifying and identifying functional sites in proteins

Info

Publication number
DK1133697T3
DK1133697T3 DK99958116T DK99958116T DK1133697T3 DK 1133697 T3 DK1133697 T3 DK 1133697T3 DK 99958116 T DK99958116 T DK 99958116T DK 99958116 T DK99958116 T DK 99958116T DK 1133697 T3 DK1133697 T3 DK 1133697T3
Authority
DK
Denmark
Prior art keywords
tag
target protein
proteins
protein
functional sites
Prior art date
Application number
DK99958116T
Other languages
Danish (da)
Inventor
L Leodevico Ilag
Jocelyn H Ng
Original Assignee
Xerion Pharmaceuticals Ag
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Xerion Pharmaceuticals Ag filed Critical Xerion Pharmaceuticals Ag
Application granted granted Critical
Publication of DK1133697T3 publication Critical patent/DK1133697T3/en

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848—Methods of protein analysis involving mass spectrometry
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/531—Production of immunochemical test materials
    • G01N33/532—Production of labelled immunochemicals
    • G01N33/533—Production of labelled immunochemicals with fluorescent label
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6818—Sequencing of polypeptides
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848—Methods of protein analysis involving mass spectrometry
    • G01N33/6851—Methods of protein analysis involving laser desorption ionisation mass spectrometry
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90—Enzymes; Proenzymes
    • G01N2333/914—Hydrolases (3)
    • G01N2333/924—Hydrolases (3) acting on glycosyl compounds (3.2)
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90—Enzymes; Proenzymes
    • G01N2333/914—Hydrolases (3)
    • G01N2333/948—Hydrolases (3) acting on peptide bonds (3.4)
    • G01N2333/976—Trypsin; Chymotrypsin

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Hematology (AREA)
  • Chemical & Material Sciences (AREA)
  • Urology & Nephrology (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Pathology (AREA)
  • General Physics & Mathematics (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Cell Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Optics & Photonics (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

The invention relates to a method for identifying one or more functional sites in proteins. Said method is characterized by the following steps: a) contacting the target protein with a binding partner (BP tag) linked with a laser-activatable marker (tag), resulting in a complex consisting of target protein and BP tag, b) irradiating the complex consisting of target protein and BP tag with laser light, resulting in the formation of free radicals which selectively modify the bound target protein at the binding site, and c) identifying the selectively modified region of the protein by a combination of protein cleavage and mass spectrometry. The invention further relates to a device for carrying out the inventive method.
DK99958116T 1998-11-24 1999-11-23 Method for modifying and identifying functional sites in proteins DK1133697T3 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
DE19854196A DE19854196C2 (en) 1998-11-24 1998-11-24 Process for the modification and identification of functional sites in proteins
PCT/EP1999/009052 WO2000031544A1 (en) 1998-11-24 1999-11-23 Method for modifying and identifying functional sites in proteins

Publications (1)

Publication Number Publication Date
DK1133697T3 true DK1133697T3 (en) 2002-12-02

Family

ID=7888853

Family Applications (1)

Application Number Title Priority Date Filing Date
DK99958116T DK1133697T3 (en) 1998-11-24 1999-11-23 Method for modifying and identifying functional sites in proteins

Country Status (10)

Country Link
EP (1) EP1133697B1 (en)
JP (1) JP2002531810A (en)
AT (1) ATE221998T1 (en)
AU (1) AU760221B2 (en)
CA (1) CA2351667A1 (en)
DE (2) DE19854196C2 (en)
DK (1) DK1133697T3 (en)
ES (1) ES2182584T3 (en)
PT (1) PT1133697E (en)
WO (1) WO2000031544A1 (en)

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
SE0003566D0 (en) * 2000-10-02 2000-10-02 Amersham Pharm Biotech Ab A method for the quantitative determination of one or more compounds
US6653067B1 (en) * 2001-02-22 2003-11-25 Isis Pharmaceuticals, Inc. Methods for identifying ligand binding sites in a biomolecule
US6858114B2 (en) 2001-07-03 2005-02-22 The University Of Alabama Laser hydrolysis of polypeptides
JP4288571B2 (en) * 2003-05-21 2009-07-01 独立行政法人科学技術振興機構 Method for analyzing physiological function of target substance
GB2422903A (en) * 2003-11-21 2006-08-09 Nec Corp Method of analyzing protein
KR101708038B1 (en) * 2014-10-31 2017-02-17 한국과학기술연구원 Novel BODIPY compound, method thereof, and method for labelling a protein or a cell by photo-crosslinking

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5565325A (en) * 1992-10-30 1996-10-15 Bristol-Myers Squibb Company Iterative methods for screening peptide libraries
ATE319855T1 (en) * 1996-12-10 2006-03-15 Sequenom Inc SEPARABLE, NON-VOLATILE MOLECULES FOR MASS MARKING
WO1999020190A1 (en) * 1997-10-23 1999-04-29 President And Fellows Of Harvard College Laser inactivation of inhibitory molecules in central nervous sy stem myelin
WO1999041607A2 (en) * 1998-02-14 1999-08-19 Gmd Forschungszentrum Informationstechnik Gmbh Fluorescent energy for elucidating the 3-d structure of biological macromolecules

Also Published As

Publication number Publication date
DE19854196C2 (en) 2001-03-15
DE19854196A1 (en) 2000-08-24
EP1133697A1 (en) 2001-09-19
JP2002531810A (en) 2002-09-24
CA2351667A1 (en) 2000-06-02
EP1133697B1 (en) 2002-08-07
ES2182584T3 (en) 2003-03-01
AU760221B2 (en) 2003-05-08
DE59902301D1 (en) 2002-09-12
ATE221998T1 (en) 2002-08-15
AU1556700A (en) 2000-06-13
PT1133697E (en) 2002-12-31
WO2000031544A1 (en) 2000-06-02

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