CN1184157A - Method for producing nucleoside-5' -phosphate ester - Google Patents

Method for producing nucleoside-5' -phosphate ester Download PDF

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CN1184157A
CN1184157A CN97122934A CN97122934A CN1184157A CN 1184157 A CN1184157 A CN 1184157A CN 97122934 A CN97122934 A CN 97122934A CN 97122934 A CN97122934 A CN 97122934A CN 1184157 A CN1184157 A CN 1184157A
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三原康博
宇多川隆
山田秀明
浅野泰久
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Ajinomoto Co Inc
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Abstract

A method for producing nucleoside-5'-phosphate ester inexpensively and in high yields involves phosphorylating nucleoside biochemically. Nucleoside-5'-phosphate ester is produced by allowing an acid phosphatase, especially an acid phosphatase having an increased affinity for a nucleoside and/or an increased temperature stability, to act at pH 3.0 to 5.5 on a nucleoside and a phosphate group donor. The phosphate group donor may be selected from polyphosphoric acid or a salt thereof, phenylphosphoric acid or a salt thereof, and carbamyl phosphate or a salt thereof. The resulting nucleoside-5'-phosphate may subsequently be collected to produce nucleoside-5'-phosphate ester.

Description

Produce the method for nucleosides-5 '-phosphoric acid ester
The present invention relates to the production method of nucleosides-5 '-phosphoric acid ester.The present invention also relates to new acid phosphatase, the gene of this acid phosphatase of encoding, contain the recombinant DNA of this gene, relate to the microorganism that comprises this recombinant DNA, can be used to produce nucleosides-5 '-phosphoric acid ester.Nucleosides-5 '-phosphoric acid ester can be used as the raw material of this class material of seasonings, medicine and production.
By using following phosphate group donor, with biochemical method with nucleoside phosphorylaseization, the method of producing nucleosides-5 '-phosphoric acid ester is known, comprises method (Japanese patent laid-open publication gazette 39-29858), the method (Japanese patent laid-open publication gazette 42-1186) of using inorganic phosphate of using p-nitrophenyl phosphoric acid, the method (the open 53-56390 of Japanese Patent) of using Tripyrophosphoric acid, the method (the open 56-82098 of Japanese Patent) of using acetylphosphate and the method (the open 63-230094 of Japanese Patent) of using Triphosaden (ATP).Yet, because the substrate that these methods are used is expensive or produce by product in reaction, so efficient and produce cheaply can not be satisfactory aspect nucleosides-5 '-phosphoric acid ester.
Therefore, the inventor develops a kind of method, by allowing specific microorganism cells under acidic conditions, act on nucleosides and phosphate group donor (being selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt and carbamyl phosphate or its salt), produce nucleosides-5 '-phosphoric acid ester efficiently, and do not produce 2 '-, 3 '-nucleosides isomer by product (the open 7-231793 of Japanese Patent).
Yet, even this method also has following shortcoming.Promptly for example, during reaction owing to the micro-unfortunately activity that has the degraded nucleosides in the microorganism used therefor cell, a part of substrate is degraded.And if continue reaction, the nucleosides-5 ' that produces so and accumulate-phosphoric acid ester is degraded.Therefore, in reaction soln, produce by product, can not obtain enough output.In addition, because the commentaries on classics phosphoric acid activity of each microorganism cells is low, if add the substrate of high density, reaction can not be carried out so.
The purpose of this invention is to provide cheap and produce the method for nucleosides-5 '-phosphoric acid ester effectively, another object of the present invention provide a kind of enzyme, this enzyme of coding gene, contain the recombinant DNA of this gene and contain this recombinant DNA, can be used for producing the microorganism of nucleosides-5 '-phosphoric acid ester.
The inventor has carried out various researchs, so that develop the method for more effectively producing nucleosides-5 '-phosphoric acid ester than ordinary method, found that, by allowing the acid phosphatase of from microorganism cell-free extract purifying under the condition of pH 3.0-5.5, act on nucleosides and phosphate group donor (being selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt and carbamyl phosphate or its salt), can produce nucleosides-5 '-phosphoric acid ester in effective high place of production.In addition, the inventor successfully obtains the wild type gene of coding acid phosphatase from different bacteriums, and, successfully obtain to have the more encoding gene of the acid phosphatase of multinuclear glycosides bacterium avidity at the wild-type acid phosphatase by deriving from sudden change of importing on the abdomen acid phosphatase of escherich's bacillus bacterium.And the inventor finds, by according to this gene of gene engineering great expression, has improved the productivity of nucleosides-5 '-phosphoric acid ester greatly.
The inventor also attempts the stability-enhanced mutant acid phosphatase of preparation temperature, purpose is to carry out the phosphoric acid shift reaction with acid phosphatase under comparatively high temps, make that the production efficiency of nucleosides-5 '-phosphoric acid ester is higher, because speed of response improves, and the phosphate receptor concentration in reaction soln is higher.Then, the inventor has successfully prepared the higher mutant acid phosphatase of describing than among the embodiment 19 of mutant acid phosphatase temperature stability, and can at high temperature be used for reaction, has therefore finished the present invention.
Promptly the invention provides the method for production nucleosides-5 '-phosphoric acid ester, may further comprise the steps: allow nucleosides is had the acid phosphatase that improves than high-affinity and/or temperature stability, under the condition of pH 3.0-5.5, act on nucleosides and phosphate group donor (preferably being selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt, acetylphosphate or its salt and carbamyl phosphate or its salt), produce and collect nucleosides-5 '-phosphoric acid ester.
On the other hand, the invention provides the method for production nucleosides-5 '-phosphoric acid ester, may further comprise the steps: allow microorganism under the condition of pH 3.0-5.5, act on nucleosides and phosphate group donor, produce and collect nucleosides-5 '-phosphoric acid ester; Wherein microorganism transforms with comprising the recombinant DNA that nucleosides-5 '-phosphoric acid ester is had an encoding gene of the acid phosphatase that improves than high-affinity and/or temperature stability.
On the other hand, the invention provides to nucleosides have the mutant acid phosphatase that improves than high-affinity and/or temperature stability, these acid phosphatases of encoding gene, contain the recombinant DNA of these genes and comprise the microorganism of recombinant DNA.<1〉preparation of acid phosphatase
Be used for not restriction especially of acid phosphatase of the present invention, as long as it under the condition of pH 3.0-5.5, gets final product by the reaction that phosphate group is transferred to nucleosides catalysis generation nucleosides-5 '-phosphoric acid ester from phosphate group donor (for example being selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt, acetylphosphate or its salt and carbamyl phosphate or its salt).This acid phosphatase preferably includes those acid phosphatases that derive from microorganism.In the embodiment of special recommendation, the present invention uses and derives from a kind of enzyme that belongs to morganella morganii genus, Escherichia, Providencia, enterobacter, klebsiella or serratia bacterium.The representative instance of this bacterium comprises following bacterial isolates.
Morganella morganii strain NCIMB 10466
Morganella morganii strain IFO 3168
Morganella morganii strain IFO 3848
Esherichia?blattae?JCM?1650
Esherichia?blattae?ATCC?33429
Esherichia?blattae?ATCC?33430
This Tuo Shi Providence ATCC 29851
This Tuo Shi Providence ATCC 33672
Enteroaerogen IFO 12010
Enteroaerogen IFO 13534
Klebsiella?planticola?IFO?14939
Klebsiella?planticola?IAM?1133
Serratia?ficaria?IAM?13540
Serratia marcescens IAM 12143
We notice, acid phosphatase (EC 3.1.3.2) is initially the enzyme of catalytic hydrolysis phosphoric acid ester reaction under acidic conditions, it has the activity of 5 '-nucleotidase (hereinafter, activity of 5 '-nucleotidase be called " phosphate monoester enzymic activity ") of degraded by nucleosides-the 5 '-phosphoric acid ester of commentaries on classics phosphatase reaction generation.Even a kind of like this acid phosphatase also can be used for the method that the present invention produces nucleosides-5 '-phosphoric acid ester.Yet, for the high place of production obtains nucleosides-5 '-phosphoric acid ester, need to use the mutant acid phosphatase, compare with the wild-type acid phosphatase of producing with above-mentioned bacterium, it will the affinity to nucleosides improve (in case of necessity, hereinafter referred is " a mutant acid phosphatase ") in the commentaries on classics phosphatase reaction of nucleosides.Preferably use the Km value to be lower than the mutant acid phosphatase of 100mM.
Obtain the mutant acid phosphatase by expressing the direct sudden change mutated genes that the gene of following acid phosphatase obtains of encoding.Perhaps, with ultraviolet radiation or be generally used for the mutagens (such as N-methyl-N '-nitro-N-nitrosoguanidine (NTG) etc.) of induced mutations, handle to produce nucleosides is had microorganism than the high-affinity acid phosphatase, cultivate the microorganism of sudden change then, generation has mutant acid phosphatase than high-affinity to nucleosides, also can obtain the mutant acid phosphatase.
Protein with activity of acid phosphatase can obtain from mentioned microorganism, promptly has this active microorganism strains by in suitable substratum, cultivating, the microorganism cells of results propagation, broken these microorganism cellss are with the preparation cell-free extract, then this protein of purifying therefrom suitably.
The substratum of culturing micro-organisms is not particularly limited, and can obtain to contain the ordinary culture medium of general carbon source, nitrogenous source, mineral ion and optional organic nutrient source for this reason.Suitably used carbon source for example comprises carbohydrate such as dextrose plus saccharose etc., such as the alcohol compound and the organic acid of glycerine etc.Used nitrogenous source comprises for example ammonia, ammoniacal liquor and ammonium salt.Suitably used in case of necessity mineral ion comprises for example magnesium ion, phosphonium ion, potassium ion, iron ion and mn ion.Suitably used organic nutrient substance source comprises for example VITAMIN and amino acid and those nutrient source that contain them, such as yeast extract paste, peptone, meat extract, corn steep liquor, caseinhydrolysate and soybean hydrolyzate etc.
Culture condition is not restriction especially also.Microorganism for example can under aerobic conditions be cultivated about 12-48 hour, simultaneously pH and temperature suitably was controlled in the scope of pH 5-8 and 25-40 ℃.
Can be for example by centrifugal, the microorganism cells of results propagation from nutrient solution.Use ordinary method, from the microorganism cells of results, prepare cell-free extract.Promptly use such as method disruption of microorganisms cells such as supersound process, Dyno-mill and French Press,, obtain cell-free extract then by the centrifugal cell debris of removing.
With the proper technology combination that is generally used for enzyme purification (such as ammonium sulfate fractional separation, ion exchange chromatography, hydrophobic chromatography, affinity chromatography, gel permeation chromatography and etc. electric purifying etc.), purifying acid phosphatase from cell-free extract.About precipitation, do not need essential purifying acid phosphatase fully.Accomplish that the pollutents of removing such as participating in degraded nucleosides substrate such as enzyme are just enough.<2〉preparation of acid phosphatase gene
Contain the dna segment that coding has the protein structure gene of activity of acid phosphatase, can from the microorganism cells that for example has this enzymic activity, begin the clone.Cloning process for example comprises with ending the method for this enzymic activity as index screening chromogene expression library, prepare this proteinic antibody with the method for screening chromogene expression library and analysis of amino acid sequence (such as the N-end sequence of this protein purification etc.), and prepares the method for probe with the screening-gene library on this basis.
Specifically, the clone of the encoding gene of the acid phosphatase of above-mentioned morganella morganii strain, Esherichia blattae, this Tuo Shi Providence, enteroaerogen, Klebsiella planticola, Klebsiella planticola, Serratia ficaria or serratia marcescens, can pass through the chromogene expression library of every kind of microorganism of preparation, and carry out as this library of index screening with phosphatase activity.
Promptly can be prepared as follows the chromogene expression library: the chromosomal DNA that at first prepares morganella morganii strain or Esherichia blattae, with suitable restriction enzyme this DNA that partly degrades, subsequently with its with can in intestinal bacteria, be connected by the carrier of self-replicating, with the recombinant DNA transformed into escherichia coli that obtains.Can use multiple restriction enzyme enzyme liberating chromosomal DNA, by adjusting the time adjustment palliating degradation degree of DeR.Can use this gene of any carrier cloning, if it can be in intestinal bacteria self-replicating.Can use for example pUC19, pUC118, pHSG298, pBR322 and pBluescript II.
Carrier can be connected with the dna segment that contains the acid phosphatase enzyme coding gene with the preparation recombinant DNA, promptly use in advance with the identical restriction enzyme of the chromosomal DNA use of degrading or with the shearing that produces is terminal and shear terminal complementary restriction enzyme enzyme liberating carrier with the chromosomal DNA segment, use then such as ligase enzymes such as T4 dna ligases, it is connected with dna segment.Any microorganism strains can be as the acceptor of the recombinant DNA for preparing, as long as it is suitable for duplicating of carrier.Can use for example such as colibacillary microorganism strains such as HB101, JM109 and DH5.
Thus obtained transformant is grown on nutrient agar, forms bacterium colony.After this, the reaction soln that will contain p-nitrophenyl phosphoric acid pours on the media surface, reacts, and the bacterial strain of expressing phosphatase activity then discharges p-nitrophenol, and shows yellow.The transformant that comprises the dna segment that contains purpose acid phosphatase enzyme coding gene can followingly be screened: by carry out above-mentioned reaction under acidic conditions, use colour-change as the index screening transformant.
After this, from the transformant recovery recombinant DNA of screening, analyze the structure of the dna segment that contains the acid phosphatase enzyme coding gene that is connected with carrier.Nucleotide sequence about the acid phosphatase enzyme coding gene, the gene that derives from morganella morganii strain NCIMB 10466 is shown among the SEQID NO:2 of sequence list, the gene that derives from Esherichia blattae JCM 1650 is shown among the SEQID NO:6 of sequence list, the gene that derives from this Tuo Shi Providence ATCC 29851 is shown among the SEQ ID NO:21 of sequence list, the gene that derives from enteroaerogen IFO 12010 is shown among the SEQ ID NO:23 of sequence list, the gene that derives from Klebsiella planticola IFO 14939 is shown among the SEQ ID NO:25 of sequence list, and the gene that derives from Serrtia ficaria IAM 13540 is shown among the SEQ ID NO:27 of sequence list.
The aminoacid sequence that Phosphoric acid esterase is given birth in the acid by the said gene coding that draws is described in SEQ ID NO:4,8,22,24,26 and 28.The present invention preferably uses the acid phosphatase by the said gene coding.In addition, the present invention also preferably uses in the acid phosphatase that the amino-acid sequence comprise and said gene encode any essentially identical acid phosphatase of amino-acid sequence." basic identical " is meant that the aminoacid sequence of acid phosphatase can substitute, lacks, inserts or change one or more amino-acid residues, and do not lose the preparation of activity (hereinafter referred to as " changeing the phosphoric acid activity ")<3〉the mutant acid phosphatase enzyme coding genes of generation nucleosides-5 '-phosphoric acid ester
The wild-type acid phosphatase of Huo Deing has the phosphate monoester enzymic activity as stated above.Therefore, during the phosphate monoester enzymic activity may be produced as nucleosides-5 '-phosphoric acid ester, As time goes on cause the factor of the property the followed degraded of product to cause reaction yield to reduce.In order to overcome this situation, be preferably on the encoding gene of acid phosphatase and produce artificial mutation, make that the affinity to nucleosides increases.
In addition, carry out phosphoester transfer with acid phosphatase under comparatively high temps, make that the production of nucleosides-5 '-phosphoric acid ester is much effective, because speed of response improves, and the concentration of the phosphate receptor in reaction soln can be higher.For this reason, be preferably on the encoding gene of acid phosphatase and produce artificial mutation, make temperature stability improve.
The method that produces the locating point mutagenesis of purpose sudden change on the purpose site of DNA comprises method (Higuchi, R., 61, in PCR technology, Erlich, H.A.Eds., the Stockton press (1989) that for example uses PCR; Carter, P., Meth.i N Enzymol., 154, 382 (1987)) and use method (Kramer, W. and Frits, H.J., Meth.in Enzymol., 154,350 (1987) of phage; Kunkel, people such as T.A., Meth.in En Zymol., 154, 367 (1987)).
Be that wherein a kind of amino-acid sequence of description order among amino-acid sequence that comprises and the SEQ ID NO:4,8,22,24,26 and 28 that is selected from sequence list is basic identical and have and increase the acid phosphatase of wild-type acid phosphatase to the sudden change of nucleosides affinity to the example of the higher mutant acid phosphatase of nucleosides affinity.Specifically, the example that derives from the mutant acid phosphatase of Esherichia blattaeJCM 1650 is that the 74th glycine residue and/or the 153rd Isoleucine residue of the amino-acid sequence of describing among the SEQ ID NO:8 in the sequence list are substituted by another amino-acid residue.In embodiment described below, the encoding gene of mutant acid phosphatase is described as an embodiment, and wherein the 74th glycine residue substitutes with asparagicacid residue, and the 153rd Isoleucine residue substitutes with threonine residues.
Be selected from the sequence list and comprise that the 63rd leucine residue, the 65th alanine residue, the 66th glutaminic acid residue, the 69th asparagicacid residue, the 71st serine residue, the 72nd serine residue, the 85th serine residue, the 92nd alanine residue, the 94th alanine residue, the 116th asparagicacid residue, the 130th serine residue, the 135th threonine residues and/or the 136th glutaminic acid residue with other sudden change of another amino acid replacement, have further improved the affinity of acid phosphatase to nucleosides among the SEQ ID NO:8.
The example of the mutant acid phosphatase that temperature stability improves is, wherein a kind of amino-acid sequence of description order is basic identical and have an acid phosphatase of the sudden change that increases wild-type acid phosphatase temperature stability among the amino-acid sequence that comprises and the SEQ ID NO:4,8,22,24,26 and 28 that is selected from sequence list.Specifically, the example that derives from the mutant acid phosphatase of Esherichia blattaeJCM 1650 is that the 104th glutaminic acid residue and/or the 151st threonine residues in the amino-acid sequence of describing among the SEQ ID NO:8 in the sequence list are substituted by another amino-acid residue.In embodiment described below, the gene of encoding mutant type acid phosphatase is described as an embodiment, and wherein the 104th glutaminic acid residue substitutes with glycine residue, and the 151st threonine residues substitutes with alanine residue.
Therefore, can be according to above-mentioned locating point mutafacient system, at the alternative Nucleotide of the specific site of wild type gene, with these mutant acid phosphatases of encoding.Increase is desirable sudden change to the sudden change of nucleosides affinity, promptly by this sudden change, produces the activity of nucleosides-5 '-phosphoric acid ester and compares with the wild-type acid phosphatase, does not reduce basically.Yet, even under the situation that the activity that produces nucleosides-5 '-phosphoric acid ester reduces, if the degree that the phosphate monoester enzymic activity reduces reduces degree greater than the activity that produces nucleosides-5 '-phosphoric acid ester, the result compares with the wild-type acid phosphatase, the activity of phosphomonoesterase reduces with the ratio of the activity that produces nucleosides-5 '-phosphoric acid ester, so also is enough.About the increase degree to the nucleosides affinity, the Km value to nucleosides in changeing phosphatase reaction is preferably lower than 100mM.
The sudden change that increases temperature stability is meant that the residual activity of this sudden change is higher than the residual activity of wild-type acid phosphatase after Temperature Treatment.The active reduction preferably do not take place in pH7.0,50 ℃ of processing in the degree that temperature stability increases after 30 minutes.
As what describe in the following embodiment, the amino-acid sequence height homology of the amino-acid sequence of the acid phosphatase of Esherichia blattae JCM 1650 and morganella morganii strain NCIMB 10466, the 72nd glycine residue in the amino-acid sequence that SEQ ID NO:4 describes, the 102nd glutaminic acid residue, the 149th threonine residues and the 151st Isoleucine residue are equivalent to the 74th glycine residue in the amino-acid sequence that SEQ ID NO:8 describes respectively, the 104th glutaminic acid residue, the 151st threonine residues and the 153rd 's Isoleucine residue.In addition, except that Esherichia blattae JCM 1650, derive from all Providence of Tuo Shi like that ATCC 29851, enteroaerogen IFO 12010, the amino-acid sequence of the acid phosphatase of microorganisms such as Klebsiellaplanticola IFO 14939 and Serrtia ficaria IAM 13540 and the amino-acid sequence height homology of morganella morganii strain NCIMB 10466, the amino-acid sequence of these acid phosphatases comprise that each is equivalent to the 72nd glycine residue in the amino-acid sequence that SEQ IDNO:4 describes respectively, the 102nd glutaminic acid residue, the amino-acid residue of the 149th threonine residues and the 151st Isoleucine residue.Therefore, the encoding gene that derives from the mutant acid phosphatase of these microorganisms can obtain as stated above.At SEQ ID NO:22, that describes in 24 or 26 derives from this Tuo Shi Providence ATCC 29851, the 92nd glycine residue in the amino-acid sequence of the acid phosphatase of enteroaerogen IFO 12010 or Klebsiella planticola IFO14939, the 122nd glutaminic acid residue, the 88th glycine residue in the basic sulphur order of the 169th threonine residues and the 171st Isoleucine residue and the acid phosphatase that derives from Serrtia ficaria IAM 13450 in SEQID NO:28, described, the 118th glutaminic acid residue, the 165th threonine residues and the 167th Isoleucine residue are equivalent to the 72nd glycine residue in the amino-acid sequence that SEQ ID NO:4 describes respectively, the 102nd glutaminic acid residue, the 149th threonine residues and the 151st Isoleucine residue.
Figure 12 has described the result of the amino-acid sequence of more above-mentioned acid phosphatase.On Figure 12 basis, which amino-acid residue of decision acid phosphatase is equivalent to another amino-acid residue of another acid phosphatase.<4〉acid phosphatase gene is imported among the host
The recombinant microorganism of high level expression activity of acid phosphatase can obtain by following steps: after will containing the dna segment and appropriate carriers reorganization of the protein coding gene with activity of acid phosphatase that obtains as stated above, this dna segment is imported among the host.In this step, express the wild-type acid phosphatase with the encoding gene of wild-type acid phosphatase, and express the mutant acid phosphatase with the encoding gene of mutant acid phosphatase.
The host comprises the e. coli microorganisms bacterial strain such as above-mentioned HB101, JM109 and DH5 etc.Except that these bacterial strains, can also be with all bacteriums as the host, acid phosphatase gene can be expressed as long as the replication orgin and the acid phosphatase gene of the recombinant DNA that makes up work, recombinant DNA is reproducible.One of them most preferred host is an e. coli jm109.
It imports the not restriction especially of carrier of acid phosphatase enzyme coding gene, as long as can duplicate in the host.When using intestinal bacteria as the host, but the example of carrier is the plasmid of self-replicating in this bacterium.For example can use ColE1 type plasmid, pl5A type plasmid, R factor type plasmid and phagotype plasmid.This class plasmid specifically comprises for example pBR322 (Gene, 2,95 (1977), pUC19 (Gene, 33,103 (1985), pUC119 (Mehtods inEmzymology, 153,3 (1987)), pACYC184 (J.Bacteriol., 134,1141 (1978) and pSC101 (Proc.Natl.Acad Sci.U.S.A., 70,3240 (1973)).
When the dna segment that contains the acid phosphatase enzyme coding gene contains the promotor that works in the host, dna segment can be connected with carrier same as before.When this dna segment does not contain this promotor, another promotor (such as lac, trp and PL etc.) that works can be connected to this upstream region of gene position in host microorganism.Even when this dna segment contained this promotor, this promotor also can substitute with another promotor, so that express the acid phosphatase enzyme coding gene effectively.
To there be special restriction by the method that carrier is connected with the dna segment that contains the acid phosphatase enzyme coding gene among the recombinant DNA importing host who makes up.Can recombinant DNA be imported among the host with ordinary method.When using intestinal bacteria as the host, can use for example Calcium Chloride Method (J.Mol.Biol., 53,159 (1970)), Hanahan method (J.Mol.Biol., 166,557 (1983)), people's such as SEM method (Gene, 96,23 (1990)), Chung method (Proc.Natl.Acad.Sci.U.S.A., 86,2172 (1989)) and electric shocking method (Nucleic Acids Res., 16,6127 (1988)).
Acid phosphatase gene can insert on the carrier DNA of self-replicating, it can be imported among the host, makes it be contained among the host as above-mentioned exchromosomal DNA.Perhaps, can be according to using transduction, transposon (Biotechnol., 1,417 (1983)), Mu phage (the open 2-109985 of Japanese Patent) or homologous recombination (Experiment S in MoLecular Genetics, ColdSpring Harbour Lab. (1972)) method is introduced acid phosphatase gene in the karyomit(e) of host microorganism.<5〉use the recombinant microorganisms express acid phosphatase gene
The transformant of the recombinant DNA of importing (containing the acid phosphatase enzyme coding gene) of Huo Deing as stated above, by it is cultivated in suitable substratum (containing carbon source, nitrogenous source, mineral ion and optional organic nutrient source), can in its cell, express activity of acid phosphatase high-levelly.Suitably used carbon source for example comprises carbohydrate such as glucose etc., such as the alcohol compound and the organic acid of glycerine etc.Used nitrogenous source comprises for example ammonia, ammoniacal liquor and ammonium salt.Suitably used in case of necessity mineral ion comprises for example magnesium ion, phosphonium ion, potassium ion, iron ion and mn ion.Suitably used organic nutrient substance source comprises for example VITAMIN and amino acid and those nutrient source that contain them, such as yeast extract paste, peptone, meat extract, corn steep liquor, caseinhydrolysate and soybean hydrolyzate.According to promotor, will add in the substratum such as IPTG induced expression agent such as (sec.-propyl-β-D-sulfo-galactopyranoside), can increase the expression amount of activity of acid phosphatase.
Culture condition is not restriction especially also.For example can under aerobic conditions cultivate about 12-48 hour, and simultaneously pH and temperature suitably were controlled in the scope of pH 5-8 and 25-40 ℃.
After this, from culture, gather in the crops microorganism cells, prepare cell-free extract by fragmentation, can be from purifying acid phosphatase wherein.Use be generally used for enzyme purification proper technology combination (such as those technology of describing in above-mentioned the<1〉bar etc.) carry out purifying.About purifying, purifying acid phosphatase fully.Accomplish that the pollutents of removing such as participating in the nucleosides degradation of substrates such as enzyme are just enough.<6〉production of nucleosides-5 '-phosphoric acid ester
Nucleosides-5 '-phosphoric acid ester can be produced in reaction mixture, promptly allow by the<1〉acid phosphatase that obtains of bar described method or wild-type acid phosphatase or by according to the<5 the mutant acid phosphatase that obtains of the gene engineering great expression gene of bar description, contact with nucleosides and phosphate group donor (being selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt, acetylphosphate or its salt and carbamyl phosphate or its salt) and induce reaction.In order to reach high productivity in this reaction, importantly the pH with reaction soln transfers in the slightly acidic scope of 3.0-5.5.
When using the encoding gene of gene engineering great expression acid phosphatase, particularly when great expression during to the higher mutant acid phosphatase enzyme coding gene of the affinity of nucleosides, also can use the culture that contains the transformant microorganism cells, cheap nucleosides-the 5 '-phosphoric acid ester of also producing effectively, from culture, separate and the results microorganism cells, or handle the acid phosphatase that replaces purifying according to for example immobilization processing, acetone treatment or lyophilize, from microorganism cells, obtain product.
The nucleosides that uses comprises for example purine nucleoside, such as inosine, guanosine, adenosine, xanthosine, purine ribonucleoside, 6-methoxyl group purine ribonucleoside, 2,6-diaminopurine ribonucleoside, 6-fluoropurine ribonucleoside, 6-thio-purine ribonucleoside, 2-amino-6-thio-purine ribonucleoside and TGR etc.; And pyrimidine nucleoside, such as uridine, cytidine, 5-aminouridine, 5-hydroxyuridine, 5-broxuridine and 6-aza uridine etc.Reaction result is that these natural type nucleosides and non-natural type nucleosides be specificity ground phosphorylation on their 5 '-position, produces corresponding nucleosides-5 '-phosphoric acid ester respectively.
The nucleosides concentration that needs to add in the reaction soln is 1-20g/dl.When use is slightly soluble in the nucleosides of water, can be by adding boric acid or, improving reaction yield such as tensio-active agents such as dimethyl sulfoxide (DMSO).
During by the fermentative production nucleosides, the fermention medium after the fermentation can add in the phosphorylation reaction liquid same as before.When comprising the composition of decomposition nucleosides-5 '-phosphoric acid ester in the substratum, preferably use purification step, make and remove described composition.
About used phosphate group donor, can be used as those phosphate group donors that Tripyrophosphoric acid or its salt uses and comprise tetra-sodium for example, tripolyphosphate, three metaphosphoric acids, four metaphosphoric acids, hexa metaphosphoric acid, their mixture of mixture, its sodium salt, sylvite and their salt.Those phosphate group donors that can be used as benzenephosphonic acid or the use of its salt comprise for example benzenephosphonic acid disodium, benzenephosphonic acid dipotassium, neighbour, neighbour-hexichol phosphoric anhydride and their mixture.Those phosphate group donors that can be used as carbamyl phosphate or the use of its salt comprise for example carbamyl phosphate disodium, carbamyl phosphate dipotassium, carbamyl phosphate two ammoniums, carbamyl phosphate two lithiums and their mixture.Those phosphate group donors that can be used as acetylphosphate or the use of its salt comprise for example acetylphosphate lithium potassium.The concentration that the phosphate group donor uses is by the nucleosides concentration decision as the phosphate group acceptor.The consumption of phosphate group donor is generally 1-5 times of nucleosides consumption.
Be generally 20-60 ℃ in temperature, be preferably 30-40 ℃, pH is 3.5-6.5, be preferably in the reaction in the slightly acidic scope of 4.0-5.0, obtains optimum.During mutant acid phosphatase that use temperature stability increases, temperature of reaction is 20-70 ℃, is preferably 30-60 ℃.Can adopt any method in quiescent processes and the stirring means to react.Conditions such as the activity of reaction times basis such as used enzyme and concentration of substrate postpone, yet, be generally 1-100 hour.
After finishing reaction, can adopt the method for using synthetic resins absorption, the method for using precipitation agent and other conventional collection and separation method, from mixture, collect and separates the nucleosides-5 ' phosphoric acid ester of production thus.
[embodiment]
Below with reference to the present invention of embodiment specific explanations, yet, the invention is not restricted to these embodiment.
, measure under the following conditions and change the phosphoric acid activity as substrate with inosine.Be reflected under 5.0,30 ℃ of the pH and carried out 10 minutes, in reaction soln (1ml), contain 40 μ mol/ml inosines, 100 μ mol/ml trisodium phosphates, 100 μ mol/ml sodium acetate buffer (pH5.0) and enzymes.Add 200 μ l 2N hydrochloric acid stopped reactions.After this, by the centrifugal precipitation of removing.Then, quantitative assay is by changeing 5 '-t-inosinic acid that phosphatase reaction produces.The enzyme amount that produced 1 μ mol, 5 '-t-inosinic acid under this standard reaction condition in per 1 minute is decided to be 1 unit.
Use 5 '-t-inosinic acid as substrate, measure the phosphate monoester enzymic activity under the following conditions.Be reflected at and carried out under 30 10 minutes, in reaction soln (1ml), contain 10 μ mol/ml, 5 '-t-inosinic acid, 100 μ mol/ml MES/NaOH damping fluid (pH6.0) and enzymes.Add 200 μ l 2N hydrochloric acid stopped reactions.After this, by the centrifugal precipitation of removing.Then, quantitative assay is by the inosine of hydrolysis reaction generation.The enzyme amount that produced 1 μ mol inosine under this standard reaction condition in per 1 minute is decided to be 1 unit.
Use high performance liquid chromatography (HPLC) to analyze inosine and 5 '-t-inosinic acid under the following conditions.
Pillar: Cosmosil 5C18-AR (4.6 * 150 mm) [producing] by nacalai tesque;
Moving phase: 5mM potassium phosphate buffer (pH2.8)/methyl alcohol=95/5;
Flow velocity: 1.0ml/min;
Temperature: room temperature;
Detect: UV 245nm.
By the way, in the reaction of nucleosides of using except that inosine, analyze as the nucleosides of raw material and the nucleosides-5 ' of generation-phosphoric acid ester with HPLC according to the method described above as raw material production nucleosides-5 '-phosphoric acid ester.
Embodiment 1: the purifying and the sign that derive from the acid phosphatase of morganella morganii strain
(pH7.0 50ml) injects Ban Kou (Sakaguchi) flask (500ml), 120 ℃ of sterilizations 20 minutes down will to contain the nutritional medium of 1g/dl peptone, 0.5g/dl yeast extract paste and 1g/dl sodium-chlor.Each flask was cultivated 16 hours 30 ℃ of concussions with morganella morganii strain NCIMB 10466 slant cultures of platinum transfering loop inoculation.Will by centrifugal microorganism cells from culture results (about 3,000g) be suspended in the 100mM potassium phosphate buffer (1L, pH7.0) in.Under 4 ℃, carried out supersound process 20 minutes, with the disruption of microorganisms cell.Suspension after handling is carried out centrifugal, to remove insoluble part.Prepare cell-free extract thus.
Ammonium sulfate is added in the cell-free extract, make to reach 30% saturation ratio.By centrifugal precipitation of removing appearance, and then ammonium sulfate added in the supernatant liquor, make to reach 60% saturation ratio.Precipitation by centrifugal collection occurs is dissolved in it in 100mM potassium phosphate buffer.
This thick enzyme solution is to 5L 100mM potassium phosphate buffer (pH7.0) dialysis 4 times, then it is added to 20mM potassium phosphate buffer (pH7.0) equilibrated DEAE-Toyopeal 650M post and (on the φ 4.1 * 22cm), uses 800ml 20mM potassium phosphate buffer (pH7.0) washing then.Change the phosphoric acid activity by discovery in the part of pillar, thereby reclaiming this part.
Ammonium sulfate is added in this part, make to reach 35% saturation ratio, it is adsorbed onto with containing 20mM potassium phosphate buffer (pH7.0) the equilibrated Butyl-Toyopeal post of 35% saturation ratio ammonium sulfate (on the φ 3.1 * 26cm).The linear concentration gradient that is 35-20% with the middle saturation ratio of potassium phosphate buffer (pH7.0) carries out wash-out.
Collect active part, and, be added to 50mM potassium phosphate buffer (pH7.0) equilibrated hydroxyapatite column (on the φ 5 * 6.5cm) then 1L 50mM potassium phosphate buffer (pH7.0) dialysis.Linear concentration gradient with 50-300mM potassium phosphate buffer (pH7.0) carries out wash-out.
Collect active part, and carry out ultrafiltration and concentration.This enzyme solution is added to (by Pharmacia production) on HiLoad TM16/60 Superdex 200 posts.With the 50mM potassium phosphate buffer that contains 100mM sodium-chlor, carry out wash-out with the flow velocity of 1.0ml/min.
According to above-mentioned steps, the result is purified into performance from cell-free extract change the active enzyme of phosphoric acid, and the purifying multiple is about 550 times, and the rate of recovery is approximately 10%.The ratio of this purification process is lived and the rate of recovery is shown in Table 1.On the SDS-polyacrylamide gel electrophoresis, this enzyme sample is a homogeneous.
Table 1 recycling step gross activity total protein is than the rate of recovery alive
(unit) (mg) (unit/mg) (%) is cell-free extract 597 127 1., 200 0.005 1002. ammonium sulfate fractional separation 568 122,210 0.005 95 (30-60%) 3.DEAE-Toyopearl 517 36,498 0.014 874.Butyl-Toyopearl, 394 1,121 0.351 665. hydroxyapatites, 112 50 2.244 196.Superdex 200 63 24 2.630 10
The enzyme of purifying has following character.
(1) effect: phosphate group from transferring on the nucleosides such as phosphate group donors such as Tripyrophosphoric acid, is produced nucleosides-5 '-phosphoric acid ester.On the contrary, this enzyme also shows the activity of hydrolysis phosphoric acid ester.
(2) Substratspezifitaet: those substrates that are used as the phosphate group donor in changeing phosphatase reaction comprise for example tetra-sodium, tripolyphosphate, three metaphosphoric acids, four metaphosphoric acids, hexa metaphosphoric acid, benzenephosphonic acid disodium, benzenephosphonic acid dipotassium, neighbour, neighbour-hexichol phosphoric anhydride, carbamyl phosphate disodium, carbamyl phosphate dipotassium, carbamyl phosphate two ammoniums and carbamyl phosphate two lithiums.Those substrates as the phosphate group acceptor comprise for example purine ribonucleoside, inosine, guanosine, adenosine, xanthosine, uridine and cytidine.On the other hand, those substrates that acted in the phosphoric acid ester hydrolysis reaction comprise for example inorganic phosphate, such as tetra-sodium, tripolyphosphate, three metaphosphoric acids, four metaphosphoric acids, hexa metaphosphoric acid etc.; Phosphoric acid ester, such as benzenephosphonic acid disodium, benzenephosphonic acid dipotassium, neighbour, neighbour-hexichol phosphoric anhydride, carbamyl phosphate disodium, carbamyl phosphate dipotassium, carbamyl phosphate two ammoniums and carbamyl phosphate two lithiums; And 5 '-Nucleotide, such as 5 '-purine ribonucleotide, 5 '-t-inosinic acid, 5 '-guanylic acid, 5 '-adenylic acid (AMP), 5 '-xanthylic acid(XMP), 5 '-uridylic acid and 5 '-cytidylic acid etc.
(3) optimal pH: 5.2 (commentaries on classics phosphatase reactions), 6.5 (phosphoric acid ester hydrolysis reaction).
(4) pH stability: pH 3.0-12.0 (handling 60 minutes) at 30 ℃.
(5) optimum temperuture: about 35 ℃.
(6) temperature stability: can stablize to 30 ℃ (under pH7.0, handling 30 minutes).
(7) effect of adding metal ion and inhibitor:
Add any metal ion, this enzyme does not show and its active relevant activation phenomenon.This activity is subjected to Ag 2+, Pb 2+, Hg 2+And Cu 2+Inhibition.This activity also is subjected to the inhibition of iodoacetic acid.
(8) molecular weight: the molecular weight that calculates according to high performance liquid chromatography (TSKgel G-3000SW is produced by Toyo Soda) is about 190,000.
(9) molecular weight subunit: the molecular weight subunit that calculates according to the SDS-polyacrylamide gel electrophoresis is about 25,000.
This enzyme not only shows the activity of phosphate group being transferred to nucleosides, and shows the activity of opposite hydrolysis phosphoric acid ester.In addition, the phosphoric acid ester hydrolytic activity (phosphate monoester enzymic activity) that shows of this enzyme is not less than 20 times than changeing the multiple that the phosphoric acid activity exceeds.Other character with coincide well with belonging to those character (Microbiology, 140,1341-1350 (1994)) that morganella morganii belongs to bacteriogenic known acid acid phosphatase.Therefore, having illustrated this enzyme is acid phosphatase.
It is in 5.5,5.0,4.5,4.0 and 3.5 the sodium acetate buffer that trisodium phosphate (10g/dl) and inosine (2g/dl) are dissolved in pH, adds above-mentioned enzyme sample, makes the concentration that reaches 50 units/dl.This reaction mixture is incubated 6 hours down at 30 ℃, keeps each pH simultaneously; As time goes on, measure the amount of the 5-' t-inosinic acid that produces.The t-inosinic acid that produces only contains 5 '-t-inosinic acid.Do not observe 2 '-t-inosinic acid and 3 '-t-inosinic acid production of by-products at all.The results are shown among Fig. 1.The production rate of 5 '-t-inosinic acid is in 5.0 times maximums of pH.Yet the maximum accumulation volume of 5 '-t-inosinic acid is higher under low pH.Reaction conditions under pH4.0 is the most effective to the production of 5 '-t-inosinic acid, and wherein by carrying out 3 hours reaction, 5 '-t-inosinic acid produces and the amount of accumulation is 2.60g/dl.
Embodiment 2: with the acid phosphatase that derives from morganella morganii strain
The phosphorylation reaction of the various nucleosides that sample carries out
Be dissolved in the sodium acetate buffer (pH4.0) with trisodium phosphate (10g/dl) with as inosine, guanosine, uridine or the cytidine (2g/dl) of phosphate group acceptor, add the enzyme sample of preparation among the embodiment 1, make the concentration that reaches 50 units/dl.This reaction mixture is incubated 3 hours down at 30 ℃, simultaneously pH is remained on 4.0.Be shown in Table 2 by the amount of reacting nucleosides-the 5 '-ester that produces.
The Nucleotide that produces only contains nucleosides-5 '-ester.Do not observe nucleosides-2 '-ester and nucleosides-3 '-ester production of by-products at all.
Table 2
Nucleosides product output
(g/dl)
Inosine 5 '-t-inosinic acid 2.60
Guanosine 5 '-guanylic acid 1.90
Uridine 5 '-uridylic acid 1.30
Cytidine 5 '-cytidylic acid 0.98
Embodiment 3: with the acid phosphatase sample that derives from morganella morganii strain
Produce 5 '-t-inosinic acid from various phosphate cpds as the phosphate group donor
With inosine (2g/dl) with as tripoly phosphate sodium STPP, the sodium polyphosphate (trade(brand)name: Polygon P of phosphate group donor, produce by Chiyoda Chemical), benzenephosphonic acid disodium or carbamyl phosphate disodium (10g/dl) be dissolved in the sodium acetate buffer (pH4.0), add the enzyme sample of preparation among the embodiment 1, make that its concentration is 50 units/dl.This reaction mixture is incubated 3 hours down at 30 ℃, simultaneously pH is remained on 4.0.Be shown in Table 3 by the amount of reacting the 5 '-t-inosinic acid that produces.
Use any phosphate group donor, all produce and accumulate 5 '-t-inosinic acid effectively.Yet when using sodium polyphosphate as the phosphate group donor, the accumulation volume of 5 '-t-inosinic acid is the highest.
Table 3
5 '-t-inosinic acid that the phosphate group donor produces
(g/dl)
Tripoly phosphate sodium STPP 2.10
Sodium polyphosphate 2.72
Benzenephosphonic acid disodium 2.33
Carbamyl phosphate disodium 2.54
Embodiment 4: the purifying and the sign that derive from the acid phosphatase of Esherichia blattae
(pH7.0 50ml) injects slope mouth flask (500ml), 120 ℃ of sterilizations 20 minutes down will to contain the nutritional medium of 1g/dl peptone, 0.5g/dl yeast extract paste and 1g/dl sodium-chlor.Each flask was cultivated 16 hours 30 ℃ of concussions with Esherichia blattae JCM 1650 slant cultures of platinum transfering loop inoculation.Gather in the crops microorganism cells by centrifugal from culture.With microorganism cells (about 3,300g) be suspended in the 100mM potassium phosphate buffer (1L, pH7.0) in.Under 4 ℃, carried out supersound process 20 minutes, with the disruption of microorganisms cell.Suspension after handling is carried out centrifugal, to remove its insoluble part.Prepare cell-free extract thus.
Ammonium sulfate is added in the cell-free extract, make to reach 30% saturation ratio.By centrifugal precipitation of removing appearance, and then ammonium sulfate added in the supernatant liquor, make to reach 60% saturation ratio.Precipitation by centrifugal collection occurs is dissolved in it in 100mM potassium phosphate buffer.
This thick enzyme solution is to 5L 100mM potassium phosphate buffer (pH7.0) dialysis 4 times, then it is added to 20mM potassium phosphate buffer (pH7.0) equilibrated DEAE-Toyopeal 650M post and (on the φ 6.2 * 35cm), uses 20mM potassium phosphate buffer (pH7.0) washing then.Change the phosphoric acid activity by discovery in the part of pillar, thereby collecting this part.
Ammonium sulfate is added in this active part, make to reach 35% saturation ratio, it is added to containing 20mM potassium phosphate buffer (pH7.0) the equilibrated Butyl-Toyopeal post of 35% saturation ratio ammonium sulfate (on the φ 5.0 * 22.5cm).The linear concentration gradient that is 35-20% with the middle saturation ratio of potassium phosphate buffer (pH7.0) carries out wash-out.
Collect active part, and, be added to 100mM potassium phosphate buffer (pH7.0) equilibrated hydroxyapatite column (on the φ 3.0 * 7.0cm) then 1L 100mM potassium phosphate buffer (pH7.0) dialysis.Linear concentration gradient with 50-100mM potassium phosphate buffer (pH7.0) carries out wash-out, and collects active part.
This enzyme solution is added to 10mM potassium phosphate buffer (pH6.0) equilibrated CM-Toyopearl post (on the φ 2.0 * 14.0cm) to 1L 100mM potassium phosphate buffer (pH6.0) dialysis then.Carry out wash-out with the linear concentration gradient that contains 0-300mM Repone K in the potassium phosphate buffer (pH6.0).Collection is from the active part of pillar wash-out.
According to above-mentioned steps, the result is purified into performance from cell-free extract change the active enzyme of phosphoric acid, and the purifying multiple is about 600 times, and the rate of recovery is approximately 16%.The ratio of this purification process is lived and the rate of recovery is shown in Table 4.On the SDS-polyacrylamide gel electrophoresis, this enzyme sample is a homogeneous.
Table 4 step gross activity total protein is than the rate of recovery alive
(unit) (mg) (unit/mg) (%) is cell-free extract 365 160 1., 650 0.002 1002. ammonium sulfate fractional separation 340 138,895 0.002 93 (30-60%) 3.DEAE-Topopearl, 318 30,440 0.010 874.Butyl-Topopearl, 232 661 0.347 635. hydroxyapatites, 96 96 1.000 266.CM-Toyopearl 59 43 1.365 16
The enzyme of purifying has following character.
(1) effect: phosphate group from transferring on the nucleosides such as phosphate group donors such as Tripyrophosphoric acid, is produced nucleosides-5 '-phosphoric acid ester.On the contrary, this enzyme also shows the activity of hydrolysis phosphoric acid ester.
(2) Substratspezifitaet: those substrates as the phosphate group donor in changeing phosphatase reaction comprise for example tetra-sodium, tripolyphosphate, three metaphosphoric acids, four metaphosphoric acids, hexa metaphosphoric acid, benzenephosphonic acid disodium, benzenephosphonic acid dipotassium, neighbour, neighbour-hexichol phosphoric anhydride, carbamyl phosphate disodium, carbamyl phosphate dipotassium, carbamyl phosphate two ammoniums and carbamyl phosphate two lithiums.Those substrates as the phosphate group acceptor comprise for example purine ribonucleoside, inosine, guanosine, adenosine, xanthosine, uridine and cytidine.On the other hand, those substrates that acted in the phosphoric acid ester hydrolysis reaction comprise for example inorganic phosphate, such as tetra-sodium, tripolyphosphate, three metaphosphoric acids, four metaphosphoric acids, hexa metaphosphoric acid etc.; Phosphoric acid ester, such as benzenephosphonic acid disodium, benzenephosphonic acid dipotassium, neighbour, neighbour-hexichol phosphoric anhydride, carbamyl phosphate disodium, carbamyl phosphate dipotassium, carbamyl phosphate two ammoniums and carbamyl phosphate two lithiums etc.; And 5 '-Nucleotide, such as 5 '-purine ribonucleotide, 5 '-t-inosinic acid, 5 '-guanylic acid, 5 '-adenylic acid (AMP), 5 '-xanthylic acid(XMP), 5 '-uridylic acid and 5 '-cytidylic acid.
(3) optimal pH: 5.2 (commentaries on classics phosphatase reactions), 6.5 (phosphoric acid ester hydrolysis reaction).
(4) pH stability: pH3.5-12.0 (handling 60 minutes) at 30 ℃.
(5) optimum temperuture: about 35 ℃.
(6) temperature stability: can stablize to 40 ℃ (under pH7.0, handling 30 minutes).
(7) effect of adding metal ion and inhibitor:
Add any metal ion, this enzyme does not show and its active relevant activation phenomenon.This activity is subjected to Fe 2+, Ag 2+, Pb 2+, Hg 2+And Cu 2+Inhibition.This activity also is subjected to the inhibition of iodoacetic acid.
(8) molecular weight: the molecular weight that calculates according to high performance liquid chromatography (TSKgel G-3000SW is produced by Toyo Soda) is about 188,000.
(9) molecular weight subunit: the molecular weight subunit that calculates according to the SDS-polyacrylamide gel electrophoresis is about 24,500.
This enzyme not only shows the activity of phosphate group being transferred to nucleosides, and shows the activity of opposite hydrolysis phosphoric acid ester, and its mode is similar to the enzyme of purifying from the cell-free extract of morganella morganii strain NCIMB 10466.In addition, the phosphoric acid ester hydrolytic activity (phosphate monoester enzymic activity) that shows of this enzyme is not less than 30 times than changeing the multiple that the phosphoric acid activity exceeds.Therefore, having illustrated this enzyme is acid phosphatase.
It is in 5.5,5.0,4.5,4.0 and 3.5 the sodium acetate buffer that trisodium phosphate (15g/dl) and inosine (3g/dl) are dissolved in pH, adds above-mentioned enzyme sample, makes the concentration that reaches 50 units/dl.This reaction mixture is incubated 6 hours down at 30 ℃, keeps each pH simultaneously; As time goes on, measure the amount of the 5-' t-inosinic acid that produces.The t-inosinic acid that produces only contains 5 '-t-inosinic acid.Do not observe 2 '-t-inosinic acid and 3 '-t-inosinic acid production of by-products at all.The results are shown among Fig. 2.The production rate of 5 '-t-inosinic acid is maximum under pH5.0.Yet the maximum accumulation volume of 5 '-t-inosinic acid is higher under low pH.Reaction conditions under pH4.0 is the most effective to the production of 5 '-t-inosinic acid.By carry out 3 hours reaction under 30 ℃, pH4.0,5 '-t-inosinic acid produces and the amount of accumulation is 1.56g/dl.
Embodiment 5: with the acid phosphatase that derives from Esherichia blattae
The phosphorylation reaction of the various nucleosides that sample carries out
Trisodium phosphate (15g/dl) and inosine, guanosine, uridine or cytidine (3g/dl) are dissolved in the sodium acetate buffer (pH4.0), add the enzyme sample of preparation among the embodiment 4, make that its concentration is 50 units/dl.This reaction mixture is incubated 3 hours down at 35 ℃, simultaneously pH is remained on 4.0.The amount of nucleosides-the 5 '-ester that produces is shown in Table 5.
The Nucleotide that produces only contains nucleosides-5 '-ester.Do not observe nucleosides-2 '-ester and nucleosides-3 '-ester production of by-products at all.
Table 5
Nucleosides product output
(g/dl)
Inosine 5 '-t-inosinic acid 1.56
Guanosine 5 '-guanylic acid 1.05
Uridine 5 '-uridylic acid 1.87
Cytidine 5 '-cytidylic acid 1.22
Embodiment 6: with the acid phosphatase sample that derives from Esherichia blattae
Produce 5 '-t-inosinic acid from various phosphate cpds as the phosphate group donor
With inosine (2g/dl) with as tripoly phosphate sodium STPP, the sodium polyphosphate (trade(brand)name: Polygon P of phosphate group donor, produce by Chiyoda Chemical), benzenephosphonic acid disodium or carbamyl phosphate disodium (10g/dl) be dissolved in the sodium acetate buffer (pH4.0), add the enzyme sample of preparation among the embodiment 4, make that its concentration is 50 units/dl.This reaction mixture is incubated 3 hours down at 35 ℃, simultaneously pH is remained on 4.0.The amount of the 5 '-t-inosinic acid that produces is shown in Table 6.
Use any phosphate group donor, all produce and accumulate 5 '-t-inosinic acid effectively.Yet when using sodium polyphosphate as the phosphate group donor, the accumulation volume of 5 '-t-inosinic acid is the highest.
Table 6
5 '-t-inosinic acid that the phosphate group donor produces
(g/dl)
Tripoly phosphate sodium STPP 1.20
Sodium polyphosphate 1.79
Benzenephosphonic acid disodium 1.50
Carbamyl phosphate disodium 1.53
Embodiment 7: morganella morganii strain karyomit(e)
The mensuration of separation (1)-terminal amino acid order of acid phosphatase enzyme coding gene
The acid phosphatase of the method purifying from morganella morganii strain NCIMB 10466 cell-free extracts that will describe according to embodiment 1, be adsorbed onto on the DITC film (producing), measure its-terminal amino acid order with Prosequencer 6625 (producing) by Milligen/Biosearch by Milligen/Biosearoh.Determined-terminal amino acid order that comprises 20 residues shown in the sequence list SEQ ID NO:1.(2) contain the separation of the dna segment of acid phosphatase enzyme coding gene
According to the method for Murray and Thomson (Nucl.Acid Res., 4321,8 (1980)), from morganella morganii strain NCIMB 10466 microorganism cellss of cultivating, extract chromosomal DNA.With the restriction enzyme Sau3 AI chromosomal DNA of partly degrading.After this, the dna segment that separates 3-6kbp by means of sucrose density gradient centrifugation.Plasmid vector pUC118 (being produced by Takara Shuzo) is connected its chromosomal DNA segment with the part degraded with restriction enzyme BamHI degraded.Connect medicine box (producing) with DNA and carry out the DNA connection according to appointed method by Takara Shuzo.After this, according to ordinary method, with the DNA mixture transformed into escherichia coli JM109 that obtains (producing) by Takara Shuzo.Transformant is containing the L nutrient agar upper berth flat board of 100 μ g/ml penbritins, allows its growth with preparation gene library.
The reaction soln that will contain 4mM p-nitrophenyl phosphoric acid and 100mM MES/NaOH damping fluid (pH6.5) is poured on the nutrient agar of transformant growth, with temperature remain on 30 15 minutes.The bacterial strain of expressing phosphatase activity discharges p-nitrophenol and shows yellow.Therefore, with this phenomenon as the index screening transformant.Screened a gene expression library that comprises about 20,000 transformant bacterial strains, the result obtains 30 transformant bacterial strains of expressing phosphatase activity.
Expressing the transformant (30 bacterial strains) of phosphatase activity separates through mono-clonal.Mono-clonal is cultivated on the L substratum (2.5ml) that contains 100 μ g/ml penbritins, be allowed to condition at 37 ℃ and cultivated 16 hours.The sodium acetate buffer (100mM, pH5.0,50 μ l) that will contain inosine (2g/dl) and trisodium phosphate (10g/dl) adds in the microorganism cells of gathering in the crops from culture, and reaction mixture was 30 ℃ of insulations 16 hours.By the production of HPLC analyzing and testing 5 '-t-inosinic acid, has the active microorganism strains of the phosphoric acid of commentaries on classics with screening.As a result, we successfully obtain 5 transformant, and they show changes the phosphoric acid activity, and supposition comprises the dna segment that contains the purpose acid phosphatase gene.
Embodiment 8: derive from morganella morganii strain NCIMB's 10466
The mensuration of acid phosphatase gene nucleotide sequence
According to alkaline lysis (Molecular Cloning 2nd edition (J.Sambrook, E.F.Fritsch and T.Maniatis, Cold Spring Harbour Laboratory Press, pl.25 (1989)), prepare plasmid from embodiment 7 transformant bacterial strains that obtain, that supposition comprises the dna segment that contains acid phosphatase gene (deriving from morganella morganii strain NCIMB 10466), analyze the dna segment that inserts.This plasmid called after pMPI501.Fig. 3 has shown the restriction map spectrum of the insertion dna segment of measuring.
By the further concrete acid phosphatase gene district that measures of subclone.The result shows that it is on the segment of 1.2kbp that this acid phosphatase gene is included in the size of shearing with restriction enzyme HindIII and EcoRI.Therefore in order to measure this nucleotide sequence, makes up a plasmid DNA, with the 1.2kbp segment be connected with the pUC118 that EcoRI degrades with HindIII.According to ordinary method, this plasmid DNA transformed into escherichia coli JM109 (being produced by TakaraShuzo) with called after pMPI505 paves plate with it at the L nutrient agar that contains 100 μ g/ml penbritins, to obtain transformant.
According to alkaline lysis, from the transformant of the e. coli jm109 that comprises pMPI505 (producing), extract plasmid by TakaraShuzo, measure nucleotide sequence.According to the method (J.Mol.Biol., 143,161 (1980)) of Sanger, measure nucleotide sequence with the terminal cycle sequencing medicine box of Taq DyeDeoxy (producing) by Applied Biochemical.The nucleotide sequence of the open reading frame of a mensuration is shown among the SEQ ID NO:2 of sequence list.The gal4 amino acid that draws from this nucleotide sequence is shown in the SEQ ID NO:3 of sequence list in proper order.In this amino-acid sequence, find a part order that fits like a glove in proper order with the purifying enzyme-terminal amino acid.The N-end of purifying enzyme is from the 21st alanine residue of order shown in the SEQ ID NO:3.Therefore, we suppose that the amino-acid sequence shown in the SEQ ID NO:3 is the amino-acid sequence of precursor protein, and comprise from the polypeptide in 20 alanine residue zones of the 1st methionine residues to the and be removed after translation.The amino-acid sequence of the maturation protein that draws thus is shown among the SEQ ID NO:4 of sequence list.The molecular weight of the maturation protein of estimating from this amino-acid sequence is calculated as 24.9 kilodaltons, and the SDS-PAGE of it and purifying enzyme coincide dry straightly.According to The above results, show commentaries on classics phosphoric acid activity owing to comprise the transformant that contains this segment plasmid, identify that this open reading frame is the coding region of purpose acid phosphatase.
The homology that compares nucleotide sequence and amino-acid sequence and known sequence respectively.Use the database of EMBL and SWISS-PROT.The result discloses, nucleotide sequence shown in the SEO ID NO:2 of sequence list and the nucleotide sequence (Thaller that derives from the known acid phosphatase gene of morganella morganii strain, M.C. wait the people, Microbiology, 140,1341 (1994)) coincide, just in the latter, the 54th G is A, and the 72nd G is A, the 276th T is G, the 378th T is C, and the 420th G is T, and the 525th C is G, the 529th C is that T and the 531st G are A, and the amino-acid sequence shown in the SEQ ID NO:4 of sequence list is identical with the amino-acid sequence of the acid phosphatase gene that derives from morganella morganii strain.The proteinic encoding gene that promptly comprises amino-acid sequence shown in the sequence list SEQ ID NO:4 is the acid phosphatase gene of morganella morganii strain NCIMB 10466.
Precursor protein comprises 249 amino acid, is 27.0 kilodaltons from its proteinic molecular weight that draws in proper order.
E. coli jm109 bacterial strain called after AJ13143 with plasmid pMPI505 conversion, in on February 23rd, 1996 under budapest treaty, national life science and human technical institute (postcode: 305 at the industrial science Technical Board, 1-3, Higashi 1-chome, Tsukuba-shi, Ibaraki-ken, Japan) carried out international storage, the storage that gives number is FERMBP-5422.
Embodiment 9: derive from morganella morganii strain NCIMB's 10466 by expression
Acid phosphatase gene amplifies active
E. coli jm109/the pMPI505 that makes up among the embodiment 8 is seeded in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours down at 37 ℃.From its culture, gather in the crops microorganism cells by centrifugal, with physiological saline washing 1 time.With microorganism cells be suspended in the 100mM potassium phosphate buffer (5ml, pH7.2) in, by under 4 ℃, carrying out 20 minutes supersound process smudge cells.Solution centrifugal with after handling to remove insoluble part, prepares cell-free extract thus.
The commentaries on classics phosphoric acid activity of the cell-free extract that measure to obtain, and the contrast of using be from morganella morganii strain wild type strain and the cell-free extract for preparing according to the e. coli jm109 of above-mentioned same procedure conversion with plasmid pUC118.The results are shown in the table 7.Not detecting in e. coli jm109/pUC118 changes the phosphoric acid activity.Also very low in morganella morganii strain wild type strain transfer phosphoric acid activity.On the other hand, e. coli jm109/pMPI505 shows the high phosphoric acid activity of changeing, and it is than 150 times that live to the morganella morganii strain wild type strain.According to this result, prove that the dna segment that imports makes intestinal bacteria express acid phosphatase high-levelly.
Table 7
Microorganism strains changes the phosphoric acid activity
(unit/mg)
Morganella morganii strain NCIMB 10,466 0.008
E. coli jm109/pUC118 does not detect
E. coli jm109/pMPI505 1.250
Embodiment 11:Esherichia blattae karyomit(e)
The mensuration of separation (1)-terminal amino acid order of acid phosphatase enzyme coding gene
Will be from Esherichia blattae JCM 1650 cell-free extracts the acid phosphatase of purifying, be adsorbed onto on the DITC film (producing), measure its-terminal amino acid order with Prosequencer6625 (producing) by Milligen/Biosearch by Milligen/Biosearch.Determined that shown in the sequence list SEQ ID NO:8 comprises the-terminal amino acid order of 15 residues.(2) contain the separation of the dna segment of acid phosphatase enzyme coding gene
According to the method for Murray and Thmoson (Nucl.Acid Res., 4321,8 (1980)), from Esherichia blattae JCM 1650 cells of cultivating, extract chromosomal DNA.With the restriction enzyme Sau3AI chromosomal DNA of partly degrading.After this, the dna segment that separates 3-6kbp with sucrose density gradient centrifugation.Plasmid vector pUC118 (being produced by Takara Shuzo) is connected its chromosomal DNA segment with the part degraded with restriction enzyme BamHI degraded.Connect medicine box (producing) with DNA and carry out the DNA connection according to designation method by Takara Shuzo.After this, according to ordinary method, with the DNA mixture transformed into escherichia coli JM109 that obtains (producing) by Takara Shuzo.Transformant is paved plate at the L nutrient agar that contains 100 μ g/ml penbritins, allows its growth with preparation gene library.
The reaction soln that will contain 4mM p-nitrophenyl phosphoric acid and 100mM MES/NaOH damping fluid (pH6.5) is poured on the nutrient agar surface of transformant growth, with temperature remain on 30 15 minutes.The bacterial strain of expressing phosphatase activity discharges p-nitrophenol and shows yellow.Therefore, with this phenomenon as the index screening transformant.Screened a chromogene expression library that comprises about 8,000 transformant bacterial strains, the result obtains 14 transformant bacterial strains of expressing phosphatase activity.
Expressing the transformant (14 bacterial strains) of phosphatase activity separates through mono-clonal.Mono-clonal is cultivated on the L substratum (2.5ml) that contains 100 μ g/ml penbritins, be allowed to condition at 37 ℃ and cultivated 16 hours.The sodium acetate buffer (100mM, pH5.0,50 μ l) that will contain inosine (2g/dl) and trisodium phosphate (10g/dl) adds in the microorganism cells of gathering in the crops from nutrient solution, 30 ℃ of reactions of carrying out 16 hours.By the production of HPLC analyzing and testing 5 '-t-inosinic acid, has the active bacterial strain of the phosphoric acid of commentaries on classics with screening.As a result, we successfully obtain 3 transformant, and they show changes the phosphoric acid activity, and supposition comprises the dna segment that contains the purpose acid phosphatase gene.
Embodiment 12: derive from Esherichia blattae JCM's 1650
The mensuration of acid phosphatase gene nucleotide sequence
According to alkaline lysis, obtain from embodiment 11, supposition comprises the transformant bacterial strain of the dna segment that contains acid phosphatase gene (deriving from Esherichia blattae JCM 1650) and extracts plasmid, analyzes the dna segment that inserts.This plasmid called after pEPI301.Fig. 5 has shown the restriction map spectrum of the insertion dna segment of measuring.
By the further concrete acid phosphatase gene district that measures of subclone.The result shows, this acid phosphatase gene be included in restriction enzyme ClaI and BamHI shearing, size is on the segment of 2.4kbp.Therefore in order to measure this nucleotide sequence, make up plasmid DNA, wherein this segment is connected with the pBluescript KS (+) that degrades with ClaI and BamHI (being produced by Stratagene).According to ordinary method, this plasmid DNA transformed into escherichia coli JM109 (being produced by Takara Shuzo) with called after pEPI305 paves plate with it at the L nutrient agar that contains 100 μ g/ml penbritins, to obtain transformant.
According to alkaline lysis, from e. coli jm109 (producing) transformant that comprises pEPI305, extract plasmid by TakaraShuzo, measure nucleotide sequence.The nucleotide sequence of the open reading frame of a mensuration is shown among the SEQ ID NO:6 of sequence list.The proteinic amino-acid sequence that draws from this nucleotide sequence is shown in the SEQ ID NO:7 of sequence list.In this amino-acid sequence, find a part order that fits like a glove in proper order with the purifying enzyme-terminal amino acid.The N-end of purifying enzyme is from the 19th leucine residue of order shown in the SEQ ID NO:7.Therefore, we suppose that the amino-acid sequence shown in the SEQ ID NO:7 is the amino-acid sequence of precursor protein matter, and comprise from the polypeptide in 18 alanine residue zones of the 1st methionine residues to the and be removed after translation.The amino-acid sequence of the maturation protein of Tui Ceing is shown among the SEQ ID NO:8 of sequence list thus.Therefore, the molecular weight of the maturation protein of estimation is calculated as 25.1 kilodaltons, and the SDS-PAGE of it and purifying enzyme coincide dry straightly.According to The above results, show commentaries on classics phosphoric acid activity owing to comprise the transformant that contains this pulsating plasmid, therefore identify that this open reading frame is the coding region of purpose acid phosphatase.
The protein coding gene that promptly comprises amino-acid sequence shown in the sequence list ESQ ID NO:8 is the acid phosphatase gene of Esherichia blattae JCM 1650.
The homology that compares nucleotide sequence and amino-acid sequence and known sequence respectively.Use the database of EMBL and SWISS-PROT.As a result, disclosing the protein shown in the SEQ ID NO:8 of sequence list is new with its DNA of coding.The precursor protein of this genes encoding comprises 249 amino acid, is 27.0 kilodaltons by its proteinic molecular weight that draws in proper order.
The homology of comparing amino acid order and known sequence respectively.The result, this protein shows the high homology with the acid phosphatase of the acid phosphatase of this Tuo Shi Providence, the acid phosphatase of morganella morganii strain among the embodiment 8 and Salmonella typhimurium, and homology is respectively 77.1%, 77.1% and 44.3%.
E. coli jm109 bacterial strain called after AJ13144 with plasmid pEPI305 conversion, in on February 23rd, 1996 under budapest treaty, national life science and human technical institute (postcode: 305 at the industrial science Technical Board, 1-3, Higashi 1-chome, Tsukuba-shi, Ibaraki-ken, Japan) carried out international storage, the storage that gives number is FERM BP-5423.
Embodiment 13: derive from Esherichia blattae JCM's 1650 by expression
Acid phosphatase gene amplifies active
E. coli jm109/the pEPI305 that makes up among the embodiment 12 is seeded in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours down at 37 ℃.From its culture, gather in the crops microorganism cells by centrifugal, with physiological saline washing 1 time.With microorganism cells be suspended in the 100mM potassium phosphate buffer (5ml, pH7.2) in, by under 4 ℃, carrying out 20 minutes supersound process smudge cells.Solution centrifugal with after handling to remove insoluble part, prepares cell-free extract thus.
The commentaries on classics phosphoric acid activity of the cell-free extract that measure to obtain, and the contrast of using is for from Esherichia blattae wild type strain with the cell-free extract for preparing the e. coli jm109 of plasmid pBluescript KS (+) according to above-mentioned same procedure conversion.The results are shown in the table 8.Not detecting in e. coli jm109/pBluescript KS (+) changes the phosphoric acid activity.Also very low in Esherichia blattae wild type strain transfer phosphoric acid activity.On the other hand, e. coli jm109/pEPI305 shows the high phosphoric acid activity of changeing, and it is than 120 times that live to Esherichia blattae wild type strain.According to this result, prove that the dna segment that imports makes intestinal bacteria express acid phosphatase high-levelly.
Table 8
Microorganism strains changes the phosphoric acid activity
(unit/mg)
Esherichia?blattae?JCM?1650?????????0.002
E. coli jm109/pBluescript KS (+) does not detect
E. coli jm109/pEPI305 0.264
Embodiment 14: derive from Esherichia blattae JCM's 1650 with comprising
The bacterial strain of acid phosphatase gene is from inosine production 5 '-t-inosinic acid
Trisodium phosphate (12g/dl) and inosine (6g/dl) are dissolved in the 100mM sodium acetate buffer (pH4.0), add the microorganism cells of above-mentioned e. coli jm109/pEPI305, making the cell concn when being converted into the microorganism cells dry weight is 200mg/dl.Reaction mixture is incubated 10 hours down at 35 ℃, simultaneously pH is remained on 4.0; As time goes on, measure the amount of the 5 '-t-inosinic acid that produces.The t-inosinic acid that produces only contains 5 '-t-inosinic acid.Do not observe the production of 2 '-t-inosinic acid and 3 '-t-inosinic acid by product at all.The results are shown among Fig. 6.At short notice, producing the reaction of 5 '-t-inosinic acid, produce and accumulate 5 '-t-inosinic acid with this microorganism very efficiently from pyrophosphate salt and inosine.
Embodiment 15: the acid phosphatase that the phosphate monoester enzymic activity is lower
The preparation of encoding gene
Described as embodiment 13 and embodiment 14, the bacterial strain that comprises the acid phosphatase gene that derives from Esherichia blattae is expressed quite a large amount of acid phosphatases, and at short notice, with this microorganism from the reaction of pyrophosphate salt and inosine production 5 '-t-inosinic acid, produce and accumulate 5 '-t-inosinic acid very efficiently.Yet the accumulation volume that it discloses 5 '-t-inosinic acid is no more than to a certain degree, because the phosphate monoester enzymic activity that this acid phosphatase itself has makes 5 ' of production-t-inosinic acid degraded.Therefore, attempt sudden change to be imported in this acid phosphatase gene that derives from Esherichia blattae of embodiment 11 clones, improve this enzyme according to method with the mutagenesis of PCR locating point.
Use dna synthesizer (394 types of producing by Applied Biosystems), according to phosphinylidyne aminate method, oligonucleotide MUT300, MUT310 and the MUT320 shown in the SEQ ID NO:9,10 and 11 of synthetic sequence list respectively.
To in embodiment 12, prepare, plasmid pEPI305 as template, M13 primer RV (producing) and MUT310 oligonucleotide (every kind 2.5 μ mol) and Taq archaeal dna polymerase (2.5 units as primer by Takara Shuzo, produce by Takara Shuzo) add and contain dATP, dCTP, dGTP, dTTP (every kind 200 μ M), the 100mM Tris-HCl damping fluid (pH8.3 of Repone K (50mM) and magnesium chloride (1.5mM), 100 μ l) in, carry out the PCR reaction, one of them circulation be included in 94 ℃ following 30 seconds, 55 ℃ following 2 minutes and 72 ℃ following 3 minutes, repeat this circulation 25 times.Use PJ2000 type thermal cycler (producing) to carry out the PCR reaction by Takara Shuzo.In addition, with above-mentioned same way as, carry out the PCR reaction as template, M13 primer M3 (producing) and MUT300 oligonucleotide (every kind 2.5 μ mol) as primer by Takara Shuzo with plasmid pEPI305 (1ng).Every kind of reaction soln is by carrying out the gel-filtration purifying with Microspin post S-400 (being produced by Pharmacia), to remove primer.
Every kind of PCR reaction product (1 μ l) is added the 100mMTris-HCl damping fluid (pH8.3 that contains dATP, dCTP, dGTP, dTTP (every kind 200 μ M), Repone K (50 mM) and magnesium chloride (1.5mM), 95 μ l) in, with it 94 ℃ of heating 10 minutes, then at 60 minutes internal cooling to 37 ℃.After this, with temperature remain on 37 15 minutes, form heteroduplex.Add Taq archaeal dna polymerase (2.5 unit), reacted 3 minutes down, make and finish heteroduplex at 72 ℃.After this, M13 primer RV and M13 primer M3 (every kind 2.5 μ mol) are added in this reaction soln, carry out PCR reaction, one of them cycle be included in 94 ℃ following 30 seconds, 55 ℃ following 2 minutes and 72 ℃ following 3 minutes, repeat 10 times the cycle.
The product of second PCR reaction is degraded with ClaI and BamHI, use the phenol/chloroform extracting then, carry out ethanol sedimentation then.This dna segment is connected with pBluescript KS (+) with ClaI and BamHI degraded.According to ordinary method, with the plasmid DNA transformed into escherichia coli JM109 that obtains (producing), it is being contained the L nutrient agar upper berth flat board of 100 μ g/ml penbritins, to obtain transformant by Takara Shuzo.
According to alkaline lysis, from transformant, extract plasmid, to measure its nucleotide sequence, confirm that purpose Nucleotide is replaced.The mutated genes for preparing encoding mutant type Phosphoric acid esterase thus, wherein the 74th of maturation protein the glycine residue (GGG) asparagicacid residue (G *A *T) substitute.The plasmid called after pEPI310 that contains this mutated genes.
According to above-mentioned identical mode, as template, MUT300 and MUT320 oligonucleotide prepare the mutated genes of encoding mutant type Phosphoric acid esterase as primer with pEPI305, wherein the 153rd of maturation protein the Isoleucine residue (ATC) threonine residues (A *CC) substitute.The plasmid called after pEPI320 that contains this mutated genes.In addition, according to above-mentioned identical mode, as template, MUT300 and MUT320 oligonucleotide prepare the mutated genes of encoding mutant type Phosphoric acid esterase as primer with pEPI310, wherein the 74th of maturation protein the glycine residue (GGG) asparagicacid residue (G *A *T) substitute, and the 153rd Isoleucine residue (ATC) threonine residues (A *CC) substitute.The plasmid called after pEPI330 that contains this mutated genes.
E. coli jm109/pEPI310, e. coli jm109/pEP1320 and the e. coli jm109/pEPI330 of the plasmid that contains corresponding mutant acid phosphatase gene will be imported, and the e. coli jm109/pEPI305 that has imported the plasmid that contains the wild-type acid phosphatase gene is inoculated in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivates 16 hours at 37 ℃.From their culture, gather in the crops microorganism cells, with physiological saline washing 1 time.With microorganism cells be suspended in the 100mM potassium phosphate buffer (5ml, pH7.0) in, by at 20 minutes smudge cellses of 4 ℃ of following supersound process.Solution after the centrifugal treating to remove insoluble part, prepares cell-free extract thus.The phosphate monoester enzymic activity of the cell-free extract that measure to obtain under pH4.0 and change the phosphoric acid activity compares the activity of they and wild type strain.
Table 9 shows the phosphate monoester enzymic activity of the acid phosphatase that wild-type acid phosphatase and phosphate monoester enzymic activity are lower and changes the active measurement result of phosphoric acid.It shows, compare with the wild-type acid phosphatase, the phosphate monoester enzymic activity of the acid phosphatase that the phosphate monoester enzymic activity is lower and commentaries on classics phosphoric acid activity all reduce, and the active reduction degree of phosphomonoesterase is greater than changeing the active reduction degree of phosphoric acid, the result, compare with the wild-type acid phosphatase, the phosphate monoester enzymic activity of mutant acid phosphatase reduces with the ratio that changes the phosphoric acid activity.
Table 9 plasmid phosphate monoester enzymic activity is changeed the active ratio of phosphoric acid 1)
(unit/mg) (unit/mg) (relative value) pEPI305 2.38 0.132 18.03 (100) pEPI310 0.26 0.019 13.68 (76) pEPI320 0.88 0.123 7.15 (39) pEPI330 0.42 0.070 6.00 (33) 1): phosphate monoester enzymic activity and the ratio that produces nucleosides-5 '-phosphoric acid ester activity
Embodiment 16: with comprising the lower acid phosphatase of phosphate monoester enzymic activity
The bacterial strain of encoding gene is from inosine production 5 '-t-inosinic acid
E. coli jm109/pEPI310, e. coli jm109/pEPI320 and the e. coli jm109/pEPI330 of the plasmid that contains the lower acid phosphatase enzyme coding gene of phosphate monoester enzymic activity will be imported, and the e. coli jm109/pEPI305 that has imported the plasmid that contains the wild-type acid phosphatase gene is inoculated in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivates 16 hours at 37 ℃.
Trisodium phosphate (12g/dl) and inosine (6g/dl) are dissolved in the sodium acetate buffer (pH4.0), add the microorganism cells of the every kind of coli strain that obtains by above-mentioned cultivation, making the cell concn when being converted into the microorganism cells dry weight is 200mg/dl.Reaction mixture is incubated 32 hours down at 35 ℃, simultaneously pH is remained on 4.0; As time goes on, measure the amount of the 5 '-t-inosinic acid that produces.The results are shown among Fig. 7.
In Fig. 7, length axis is represented the concentration (mg/dl) of 5 '-t-inosinic acid, and axis of abscissa is represented the reaction times (h).For the reaction process of measuring with corresponding strain cell, e. coli jm109/pEPI305 represents with filled circles, e. coli jm109/pEPI310 represents that with solid triangle e. coli jm109/pEPI320 represents with open circles, and e. coli jm109/pEPI330 represents with hollow square.
Using the bacterial strain that comprises the lower acid phosphatase of phosphate monoester enzymic activity from the reaction of inosine production 5 '-t-inosinic acid, the degradation speed of 5 ' of production-t-inosinic acid reduces.As a result, the output of 5 '-t-inosinic acid and accumulation volume have all increased.E. coli jm109/pEPI330 shows 5 '-t-inosinic acid of high accumulation volume, this bacterial strain comprises the encoding gene of the lower acid phosphatase of phosphate monoester enzymic activity, and wherein the 74th glycine residue and the 153rd Isoleucine residue substitute with asparagicacid residue and threonine residues respectively.
Embodiment 17: with comprising the lower acid phosphatase of phosphate monoester enzymic activity
The bacterial strain of encoding gene is produced various nucleosides-5 '-phosphoric acid ester
E. coli jm109/the pEPI330 that imports the plasmid that contains the lower acid phosphatase enzyme coding gene of phosphate monoester enzymic activity is inoculated in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.
Be dissolved in the 100mM sodium acetate buffer (pH4.0) with trisodium phosphate (12g/dl) with as inosine, guanosine, uridine or the cytidine (6g/dl) of phosphate group acceptor, add in the mentioned microorganism cell, making the cell concn when being converted into dry cell weight is 200mg/dl.Reaction mixture is incubated 32 hours down at 35 ℃, simultaneously pH is remained on 4.0.The amount of nucleosides-the 5 '-phosphoric acid ester of producing is shown in Table 10.The Nucleotide that produces only contains nucleosides-5 '-phosphoric acid ester.Do not observe the production of nucleosides-2 '-phosphoric acid ester and nucleosides-3 '-phosphoric acid ester by product at all.
Table 10
Nucleosides product output
(g/dl)
Inosine 5 '-t-inosinic acid 7.45
Guanosine 5 '-guanylic acid 4.77
Uridine 5 '-uridylic acid 8.93
Cytidine 5 '-cytidylic acid 6.60
Embodiment 18: with comprising phosphate monoester enzymic activity lower acid phosphatase enzyme coding gene
Bacterial strain is produced 5 '-t-inosinic acid from the various phosphate cpds as the phosphate group donor
E. coli jm109/the pEPI330 that imports the plasmid that contains the mutant acid phosphatase gene is inoculated in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.
With inosine (6g/dl) with as tripoly phosphate sodium STPP, the sodium polyphosphate (trade(brand)name: Polygon P of phosphate group donor, produce by Chiyoda Chemical), benzenephosphonic acid disodium or carbamyl phosphate disodium (12g/dl) be dissolved in the 100mM sodium acetate buffer (pH4.0), add in the mentioned microorganism cell, making the cell concn when being converted into dry cell weight is 200mg/dl.Reaction mixture is incubated 32 hours down at 35 ℃, simultaneously pH is remained on 4.0.The amount of 5 '-t-inosinic acid of producing is shown in Table 11.Use any phosphate group donor, all produce and accumulate 5 '-t-inosinic acid effectively.Yet when using Tripyrophosphoric acid as the phosphate group donor, the accumulation volume of 5 '-t-inosinic acid is the highest.
Table 11
5 '-t-inosinic acid that the phosphate group donor is produced
(g/dl)
Tripoly phosphate sodium STPP 5.96
Sodium polyphosphate 8.84
Benzenephosphonic acid disodium 7.60
Carbamyl phosphate disodium 7.73 embodiment 19
To deriving from the New-mutant acid phosphatase of Esherichia blattae JCM1650
The research of the zymologic property of the generation of gene and this mutant acid phosphatase gene
In embodiment 19-22, under the following conditions, measure commentaries on classics phosphoric acid activity to nucleosides.With the 1ml reaction soln that contains 40 μ mol/ml inosines, 100 μ mol/ml trisodium phosphates, 100 μ mol/ml sodium acetate buffers (pH4.0) and enzyme, under 30 ℃, pH4.0, carry out 10 minutes reaction.Add 200 μ l 2N hydrochloric acid and end this reaction.Then, by the centrifugal precipitation of removing, under these conditions, measure amount by the 5 '-t-inosinic acid that changes the phosphoric acid generation.Under these standard reaction conditions, the enzyme amount of producing 1 μ mol t-inosinic acid is defined as 1 unit.
In addition, inosine concentration is become 100 μ mol/ml from 10 μ mol/ml, under the reaction conditions of above-mentioned composition, measure and change the phosphoric acid activity, use Hanes-Woolf graphing method [Biochem.J., 26,1406 (1932)] measure the velocity constant of changeing inosine in the phosphoric acid activity.
According to the following stated, the mutant enzyme that being used for described in the embodiment 15 is improved the output of nucleosides-5 '-phosphoric acid ester carries out detailed analysis.Find subsequently, mutant enzyme to the affinity wild-type enzyme of nucleosides to the nucleosides affinity, improved 2 times.Therefore, the inventor thinks, by increasing the affinity of above-mentioned enzyme to nucleosides, can improve the productivity of nucleosides-5 '-phosphoric acid ester, by gene engineering, further modifies this enzyme.
Use the embodiment 15 described plasmid pEPI305 that contain the wild-type acid phosphatase enzyme coding gene that derives from Esherichia blattae, by gene engineering the site-specific nature sudden change is imported in this plasmid DNA, produce the gene of encoding mutant type acid phosphatase.PEPI305 is for being connected to the pBluescript KS (+) (by the Stratagene supply) that shears with ClaI and BamHI and going up the plasmid DNA that forms by shearing and contain the 2.4Kbp dna segment that derives from blattae escherich's bacillus JCM6150 wild-type acid phosphatase enzyme coding gene with restriction enzyme ClaI and BamHI.The base sequence of this acid phosphatase enzyme coding gene is represented by the SEQ IDNO:6 of sequence list.In addition, the amino-acid sequence of the precursor protein that is drawn by this base sequence is represented by the SEQ ID NO:7 of sequence list.From purifying enzyme (describing the embodiment 4) analytical results, infer the amino-acid sequence that maturation protein, represent with the SEQ ID NO:8 of sequence list.
Use dna synthesizer (by 394 types of Applied Biosystem supply), with the synthetic oligonucleotide MUT300 (the SEQ ID NO:9 of sequence list) of phosphinylidyne aminate method with order shown in the sequence list, MUT310 (the SEQ ID NO:10 of sequence list), MUT320 (the SEQ ID NO:11 of sequence list), MUT330 (the SEQ ID NO:12 of sequence list), MUT340 (the SEQ ID NO:13 of sequence list), MUT350 (the SEQ ID NO:14 of sequence list), MUT360 (the SEQ ID NO:15 of sequence list), MUT370 (the SEQ IDNO:16 of sequence list), MUT380 (the SEQ ID NO:17 of sequence list) and MUT390 (the SEQ ID NO:18 of sequence list).
Will be as 1ng pEPI305, the 2.5 μ mol M13 primer RV of template (by TakaraShuzo Co., Ltd. supply), 2.5 μ mol oligonucleotide MUT310 and 2.5 Taq of unit archaeal dna polymerases (by Takara Shuzo Co., the Ltd. supply) add and contain in the 100 μ l Tris-hydrochloride buffers (pH8.3) of 200 μ M dATP, 200 μ M dCTP, 200 μ M dGTP, 200 μ M dTTP, 50mM Repone K and 1.5mM magnesium chloride.Carry out PCR, wherein three is rapid step by step-promptly 94 ℃ following 30 seconds, 55 ℃ following 2 minutes and 72 ℃ following 3 minutes, repeat 25 times.In this reaction, use PJ2000 type thermo cycler (by Takara Shuzo Co., the Ltd. supply).In addition, equally carry out PCR as template, 2.5 μ mol M13 primer M3 (by Takara Shuzo Co., the Ltd. supply) as primer and 2.5 μ mol oligonucleotide MUT300 with 1ng pEPI305.By carrying out every kind of reaction soln of gel-filtration purifying, to remove primer with Microspin post S-400 (by the Pharmacia supply).
Every kind of PCR solution adding of 1 μ l is contained in 95 μ l, the 100 mM Tris-hydrochloride buffers (pH8.3) of 200 μ M dATP, 200 μ M dCTP, 200 μ M dGTP, 200 μ M dTTP, 50mM Repone K and 1.5mM magnesium chloride.With mixture 94 ℃ of heating 10 minutes, then at 60 minutes internal cooling to 37 ℃, 37 ℃ of insulations 15 minutes, to form heteroduplex.Add 2.5 Taq of unit archaeal dna polymerases, reacted 3 minutes down at 72 ℃, to finish heteroduplex.Subsequently, 2.5 μ mol M13 primer RV and 2.5 μ mol M13 primer M3 are added in this reaction soln, carry out PCR reaction, wherein three is rapid step by step-promptly 94 ℃ following 30 seconds, 55 ℃ following 2 minutes and 72 ℃ following 3 minutes, repeat 10 times.
Second PCR product sheared with ClaI and BamHI, used the mixture extracting of phenol and chloroform then, use ethanol sedimentation.This dna segment is connected on the pBluescript KS (+) that shears with ClaI and BamHI.Use ordinary method, with the plasmid DNA transformed into escherichia coli JM109 (by Takara Shuzo Co., the Ltd. supply) of gained.With it at the L of the penbritin that contains 100 μ g/ml nutrient agar upper berth flat board, to obtain transformant.Prepare plasmid with alkali bacterium cracking process from transformant, measure base sequence, it is replaced to identify the purpose base.With people's such as Sanger method [J.Mol.Biol., 143,161 (1980)], carry out the mensuration of base sequence with Taq DyeDeoxyTerminator Cycle order-checking medicine box (by Applied Biochemical supply).Like this, produce the mutated genes of encoding mutant type Phosphoric acid esterase, wherein the 74th of maturation protein the glycine residue (GGG) asparagicacid residue (G *A *T) substitute.This contains the plasmid called after pEPI310 (embodiment 15) of mutated genes.
Repeat above-mentioned steps with the plasmid that imports sudden change as template, suddenly change with cumulative bad ground introduction site specificity.Prepare plasmid with alkali bacterium cracking process from transformant, measure base sequence, it is replaced to identify the purpose base.The mutated genes and the mutational site of the encoding mutant type Phosphoric acid esterase of gained are shown in Table 12.Amino-acid residue in the mutational site is represented an amino-acid residue in the amino-acid sequence of the maturation protein represented with SEQ ID NO:8.
Table 12
The plasmid title Starting material Primer Sudden change position and alternate amino acid
pEPI305 ??- Wild-type
pEPI310 ??pEPI305 ??MUT300 ??MUT310 ??74Gly(GGG)→Asp(G *A *T)
pEPI330 ??pEPI310 ??MUT300 ??MUT320 ??74Gly(GGG)→Asp(G *A *T) ??153Ile(ATC)→Thr(A *CC)
pEPI340 ??pEPI330 ??MUT300 ??MUT330 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??74Gly(GGG)→Asp(G *A *T) ??153Ile(ATC)→Thr(A *CC)
pEPI350 ??pEPI340 ??MUT300 ??MUT340 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??74Gly(GGG)→Asp(G *A *T) ??85Ser(TCC)→Tyr(T *AC) ??153Ile(ATC)→Thr(A *CC)
pEPI360 ??pEPI340 ??MUT300 ??MUT350 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??74Gly(GGG)→Asp(G *A *T) ??135Thr(ACC)→Lys(A *A *A) ??136Glu(GAG)→Asp(GA *C) ??153Ile(ATC)→Thr(A *CC)
pEPI370 ??pEPI360 ??MUT300 ??MUT360 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??69Asn(AAC)→Asp( *GAC) ??71Ser(AGC)→Ala( *G *CC) ??72Ser(AGT)→Ala( *G *CT) ??74Gly(GGG)→Asp(G *A *T) ??135Thr(ACC)→Lys(A *A *A) ??136Glu(GAG)→Asp(GA *C) ??153Ile(ATC)→Thr(A *CC)
pEPI380 ??pEPI370 ??MUT300 ??MUT370 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??69Asn(AAC)→Asp( *GAC) ??71Ser(AGC)→Ala( *G *CC) ??72Ser(AGT)→Ala( *G *CT) ??74Gly(GGG)→Asp(G *A *T) ??116Asp(GAT)→Glu(GA *A) ??135Thr(ACC)→Lys(A *A *A) ??136Glu(GAG)→Asp(GA *C) ??153Ile(ATC)→Thr(A *CC)
pEPI390 ??pEPI380 ??MUT300 ??MUT380 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??69Asn(AAC)→Asp( *GAC) ??71Ser(AGC)→Ala( *G *CC) ??72Ser(AGT)→Ala( *G *CT) ??74Gly(GGG)→Asp(G *A *T) ??116Asp(GAT)→Glu(GA *A) ??130Ser(TCT)→Glu( *G *A *A) ??135Thr(ACC)→Lys(A *A *A) ??136Glu(GAG)→Asp(GA *C) ??153Ile(ATC)→Thr(A *CC)
pEPI400 ??pEPI380 ??MUT300 ??MUT390 ??63Leu(CTG)→Gln(C *AG) ??65Ala(GCG)→Gln( *C *AG) ??66Glu(GAA)→Ala(G *CA) ??69Asn(AAC)→Asp( *GAC) ??71Ser(AGC)→Ala( *G *CC) ??72Ser(AGT)→Ala( *G *CT) ??74Gly(GGG)→Asp(G *A *T) ??92Ala(GCC)→Ser( *A *GC) ??94Ala(GCG)→Glu(G *A *A) ??116Asp(GAT)→Glu(GA *A) ??135Thr(ACC)→Lys(A *A *A) ??136Glu(GAG)→Asp(GA *C) ??153Ile(ATC)→Thr(A *CC)
Importing contains the e. coli jm109/pEPI330 of the plasmid of mutant acid phosphatase gene, e. coli jm109/pEPI340, e. coli jm109/pEPI350, e. coli jm109/pEPI360, e. coli jm109/pEPI370, e. coli jm109/pEPI380, e. coli jm109/pEPI390 and e. coli jm109/pEPI400 and imported among the e. coli jm109/pEPI305 of the plasmid that contains the wild-type acid phosphatase gene each and be inoculated in the 50ml L substratum of the penbritin that contains 100 μ g/ml and 1mM IPTG cultivated 16 hours at 37 ℃.By centrifugal, collecting cell from the 2L nutrient solution of each bacterial strain is with normal saline solution washing 1 time.With cell suspension in 50ml 100mM phosphate buffered saline buffer (pH7.0), 4 ℃ of following supersound process 20 minutes with smudge cells.The solution of centrifugal processing like this is to remove insoluble part, the preparation cell-free extract.With the method that embodiment 4 describes, every kind of acid phosphatase of purifying from every kind of cell-free extract.Every kind of enzyme product all is homogeneous in the SDS-polyacrylamide gel electrophoresis.
Measure the mutant acid phosphatase of purifying and the inosine velocity constant in the wild-type acid phosphatase commentaries on classics phosphoric acid, the results are shown in the table 13.We find, the mutant enzyme of raising nucleosides-5 '-phosphoric acid ester productivity that describe, that in e. coli jm109/pEPI330, express in embodiment 15, its Vmax reduces, but it reduces greatly to the Km value of inosine, this means with the wild-type enzyme of in e. coli jm109/pEPI305, expressing and compare that it increases more than 2 times or 2 times to the affinity of inosine.This is hinting that the productivity of the nucleosides-5 ' of this mutant enzyme-phosphoric acid ester improves greatly, and its reason is not only because its activity of 5 '-nucleotidase reduces, and because it to the affinity of nucleosides improve-this is an important factor.Therefore, we expect, the affinity raising of nucleosides are caused the raising of productivity.
The New-mutant enzyme of expressing in the e. coli jm109 that imports the New-mutant enzyme gene that produces in the present embodiment shows the affinity of nucleosides higher than the affinity of expressing enzyme in embodiment 15 among the e. coli jm109/pEPI330 that describes.Therefore, we estimate that the productivity of nucleosides-5 '-phosphoric acid ester improves.In addition, the mutant enzyme of expressing in e. coli jm109/pEPI380 is compared with wild-type enzyme, has not only improved the affinity to nucleosides, and has improved the Vmax value.In addition, we estimate that the productivity of nucleosides-5 '-phosphoric acid ester improves.
Table 13
Bacterial strain Km with enzyme, (mM) Vmax, (e. coli jm109/pEPI305 202 1.83 e. coli jm109s/pEPI330 109 1.39 e. coli jm109s/pEPI340 85 1.03 e. coli jm109s/pEPI350 85 0.93 e. coli jm109s/pEPI360 55 1.33 e. coli jm109s/pEPI370 42 1.15 e. coli jm109s/pEPI380 42 2.60 e. coli jm109s/pEPI390 42 2.58 e. coli jm109s/pEPI400 43 2.11 embodiment 20 of unit/mg)
Produce 5 '-t-inosinic acid with the bacterial strain that contains new mutant acid phosphatase gene
Each that imports among e. coli jm109/pEPI330, e. coli jm109/pEPI340, e. coli jm109/pEPI360, e. coli jm109/pEPI370 and the e. coli jm109/pEPI380 of the plasmid that contains the mutant acid phosphatase gene is inoculated in the 50ml L substratum that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.
Tetra-sodium (15g/dl) and 8g/dl inosine are dissolved in the acetate buffer (pH4.0).Adding has imported the e. coli jm109 bacterial strain that contains said mutation type acid phosphatase gene and wild-type acid phosphatase gene in this solution, and feasible cell concn according to the dry cell weight meter reaches 200mg/dl.Be reflected at and carried out under 35 32 hours, simultaneously pH is remained on 4.0, in whole process, measure the amount of the 5 '-t-inosinic acid that forms.The t-inosinic acid that forms is 5 '-t-inosinic acid, does not observe the generation of 2 '-t-inosinic acid and 3 '-t-inosinic acid by product at all.The results are shown among Fig. 8.
The e. coli jm109 of describing among the embodiment 15/pEPI330 shows a large amount of accumulation 5 '-t-inosinic acids.Although still have substrate, the generation of 5 '-t-inosinic acid stops when the accumulation volume of 5 ' t-inosinic acid reaches 7.5g/dl, and the amount of 5 '-t-inosinic acid no longer increases.On the contrary, the bacterial strain that contains new mutant acid phosphatase gene provides 5 ' of a large amount of accumulation-t-inosinic acid.Especially, in the reaction of using e. coli jm109/pEPI370 and e. coli jm109/pEPI380, provide 5 '-t-inosinic acid of greater amount accumulation.In addition, this speed of reaction height shows that the productivity of 5 '-t-inosinic acid further improves greatly.Especially in e. coli jm109/pEPI380, the speed of reaction height shows quite high reactivity.Embodiment 21
Produce various nucleosides-5 '-phosphoric acid ester with the bacterial strain that contains new mutant acid phosphatase gene
Be inoculated in the 50ml L substratum that contains 100 μ g/ml penbritins and 1mM IPTG importing the e. coli jm109/pEPI380 that contains new mutant acid phosphatase gene plasmid, cultivated 16 hours at 37 ℃.
Tetra-sodium (15g/dl) and 8g/dl are dissolved in the 100mM acetate buffer (pH4.5) as inosine, guanosine, uridine or the cytidine of phosphate group acceptor.Add above-mentioned bacterial strains, feasible cell concn according to the dry cell weight meter reaches 100mg/dl.Be reflected at and carried out under 35 12 hours, simultaneously pH is remained on 4.0.The amount of nucleosides-the 5 '-phosphoric acid ester that generates is shown in Table 14.Can both change phosphoric acid well with any nucleosides, generate and accumulate corresponding nucleosides-5 '-phosphoric acid ester.The Nucleotide that generates is nucleosides-5 '-phosphoric acid ester, does not observe the generation of nucleosides-2 '-phosphoric acid ester and nucleosides-3 '-phosphoric acid ester by product at all.
Table 14
Nucleosides product output
(g/dl)
Inosine 5 '-t-inosinic acid 12.05
Guanosine 5 '-guanylic acid 5.78
Uridine 5 '-uridylic acid 13.28
Cytidine 5 '-cytidylic acid 10.65 embodiment 22
With the bacterial strain that contains new mutant acid phosphatase gene with as the phosphate group donor
Various phosphate cpds produce 5 '-t-inosinic acids
E. coli jm109/the pEPI380 that imports the plasmid that contains new mutant acid phosphatase gene is inoculated in the 50ml L substratum that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.
Inosine (6g/dl) and 15g/dl tri-polyphosphate, polyphosphate (" Polygon P ", the trade(brand)name of Chiyoda Kagaku K.K. product), toluylic acid disodium or carbamyl phosphate disodium are dissolved in the 100mM acetate buffer (pH4.0).Add above-mentioned bacterial strains, feasible cell concn according to the dry cell weight meter reaches 100mg/dl.Be reflected at and carried out under 35 12 hours, simultaneously pH is remained on 4.0.The amount of the 5 '-t-inosinic acid that generates is shown in Table 15.With any phosphate group donor, all generate and accumulate 5 '-t-inosinic acid very effectively.When especially using polyphosphate as the phosphate group donor, 5 '-t-inosinic acid of accumulation maximum.
Table 15
5 '-t-inosinic acid that the phosphate group donor generates
(g/dl)
Tripoly phosphate sodium STPP 10.84
Sodium polyphosphate 13.35
Toluylic acid disodium 12.84
Carbamyl phosphate disodium 12.42
Acetylphosphate potassium lithium 10.65 embodiment 23: derive from this Tuo Shi Providence chromosomal acid phosphatase gene
Separate and this gene nucleotide mensuration in proper order
Synthetic respectively oligonucleotide PRPl and PRP2 with nucleotide sequence of describing among the SEQ ID NO:19 and 20 of sequence list.On the known nucleotide of this Tuo Shi Providence acid phosphatase enzyme coding gene order (EMBL database registration number X64820) basis, design the increase acid phosphatase enzyme coding gene of this Tuo Shi Providence of these oligonucleotide.
According to the method for Murray and Thomson (Nucl.Acid Res., 4321,8 (1980)), from the microorganism cells of this Tuo Shi Providence ATCC 29851 of cultivating, extract chromosomal DNA.With chromosomal DNA (0.1ng) as template, oligonucleotide PRPl and PRP2 (every kind 2.5 μ mol) are as primer and Taq archaeal dna polymerase (2.5 units, produce by Takara Shuzo) add the 100mM Tris-hydrochloride buffer (pH8.3 that contains dATP, dCTP, dGTP, dTTP (every kind 200 μ M), Repone K (50mM) and magnesium chloride (1.5mM), 100 μ l) in, carry out the PCR reaction, one of them circulation be included in 94 ℃ following 30 seconds, 55 ℃ following 2 minutes and 72 ℃ following 3 minutes, repeat this circulation 30 times.This reaction soln reclaims the dna segment of the amplification that is approximately 1kbp by means of glass powder (being produced by Takara Shuzo) then through agarose gel electrophoresis.This gene segment is degraded with BamHI, is connected with the pUC118 that degrades with BamHI.The plasmid called after pPRP100 of Huo Deing as stated above.
Measure the phosphate monoester enzymic activity of the transformant e. coli jm109/pPRP100 that imports pPRP100 and change the phosphoric acid activity.As a result, strains expressed goes out activity and the phosphate monoester enzymic activity of phosphoric acid being transferred to nucleosides.
According to alkaline lysis, from e. coli jm109/pPRP100 transformant, extract plasmid, to measure nucleotide sequence.The nucleotide sequence of the open reading frame of a mensuration and be shown in the SEQ ID NO:21 and 22 of sequence list from the proteinic amino-acid sequence that this nucleotide sequence draws.The nucleotide sequence of the nucleotide sequence of open reading frame and known this Tuo Shi Providence acid phosphatase gene fits like a glove.
Embodiment 24: derive from enteroaerogen, Planticola Cray Bai Shi bacillus
With the chromosomal acid phosphatase gene of Serratia ficaria
The mensuration of the nucleotide sequence of separation and these genes
According to Murray and Thomson (Nucl.Acid Res., 4321,8 (1980)) method is extracted chromosomal DNA from the microorganism cells of the enteroaerogen IFO 12010, the Klebsiella planticola IFO 14939 that cultivate and Serrtia ficaria IAM 13540.Then, according to the methods of describing among the embodiment 7 (2), make up the chromogene expression library that comprises about 20,000 the e. coli jm109 transformant row filter of going forward side by side, obtaining performance changes the active transformant of phosphoric acid.We think that in these transformant each all comprises the acid phosphatase gene that derives from each original strain.
According to alkaline lysis, extract plasmid DNA from thinking the intestinal bacteria transformant with the acid phosphatase gene that derives from enteroaerogen IFO 12010, analyze the DNA that inserts in the plasmid.Above-mentioned plasmid called after pENP100.The restriction map spectrum that derives from the insertion DNA of enteroaerogen IFO 12010 is shown among Fig. 9.
Result by subclone concrete analysis acid phosphatase gene district shows that this acid phosphatase gene is included in the 1.6kbp segment of shearing with restriction enzyme SalI and KpnI.Then, this SalI-KpnI segment is connected with pUC118 with SalI and KpnI degraded, makes up a plasmid.The plasmid called after pENP110 of gained.
According to above-mentioned steps, extract plasmid DNA from thinking the intestinal bacteria transformant with the acid phosphatase gene that derives from Klebsiella planticolaIFO 14939 according to alkaline lysis, analyze the DNA that inserts in the plasmid.Above-mentioned plasmid called after pKLP100.The restriction map spectrum that derives from the insertion DNA of Klebsiella planticola IFO 14939 is shown among Figure 10.
Result by subclone concrete analysis acid phosphatase gene district shows that this acid phosphatase gene is included in the 2.2 kbp segments of shearing with restriction enzyme KpnI and EcoRI.Then, this KpnI-EcoRI segment is connected with pUC118 with KpnI and EcoRI degraded, makes up a plasmid.The plasmid called after pKLP110 of gained.
Similarly,, extract plasmid DNA the intestinal bacteria transformant with the acid phosphatase gene that derives from Serrtia ficaria IAM 13540, analyze the DNA that inserts in the plasmid from thinking according to alkaline lysis.Above-mentioned plasmid called after pSEP100.The restriction map spectrum that derives from the insertion DNA of Serrtia ficaria IAM13540 is shown among Figure 11.
Result by subclone concrete analysis acid phosphatase gene district shows that this acid phosphatase gene is included in the 1.4kbp segment of shearing with restriction enzyme HindIII.Then, this HindIII segment is connected with the pUC118 that degrades with HindIII, makes up a plasmid.The plasmid called after pSEP110 of gained.
Then, according to alkaline lysis, from the transformant e. coli jm109/pENP110, the e. coli jm109/pKLP110 that import pENP110, pKLP110 and pSEP110 respectively, e. coli jm109/pSEP110, extract plasmid DNA.According to the method that embodiment 8 describes, measure the insertion nucleotide sequence of these plasmids.Nucleotide sequence about the open reading frame of the insertion measured, enteroaerogen IFO 12010 is shown among the SEQID NO:23, Klebsiella planticola IFO 14939 is shown among the SEQ ID NO:25, and being shown among the SEQ ID NO:27 of Serrtia ficaria IAM 13540.In addition, the amino-acid sequence that draws is shown in respectively among the SEQ ID NO:24,26 and 28.Show commentaries on classics phosphoric acid activity because comprise the transformant of these plasmids (containing these segments), therefore identifying these open reading frames is the purpose acid phosphatase gene.
Compare nucleotide sequence and the amino-acid sequence that draws and the homology of known sequence respectively.Use the database of EMBL and SWISS-PROT.The result discloses, and the gene of describing in sequence list SEQ ID NO:23,25 and 27 is new gene.We suppose that the protein by the genes encoding that derives from enteroaerogen IFO 12010 comprises 248 amino-acid residues, and the protein that derives from the genes encoding of Klebsiella planticola IFO 14939 comprises 248 amino-acid residues.And the protein that derives from the genes encoding of Serrtia ficaria IAM 13540 comprises 244 amino-acid residues.A possibility is that these protein may be the same with the acid phosphatase of Esherichia blattae with deriving from morganella morganii strain, is precursor protein.
The known amino acid order (EMBL registration number X64820) of the acid phosphatase of amino-acid sequence that draws from nucleotide sequence and deriving from of obtaining among embodiment 8 amino-acid sequence that morganella morganii strain NCIMB 10466 acid phosphatases draw, deriving from of obtaining in embodiment 12 amino-acid sequence that Esherichia blattae JCM 1650 acid phosphatases draw and this Tuo Shi Providence together, be shown among Figure 12, with amino-acid residue of a letter representation.Amino-acid residue identical in all amino-acid sequences is represented with asterisk under the order of Figure 12.
As shown in figure 12, derive from the mutual height of the amino-acid sequence homology of the acid phosphatase of 6 bacterial strains, in all amino-acid sequences, 130 amino-acid residues are identical.Therefore, we suppose that these acid phosphatases have similar function.
Embodiment 25: derive from enteroaerogen, Klebsiella planticola by expression
Amplify active with the acid phosphatase gene of Serratia ficaria
E. coli jm109/pENP110, the e. coli jm109/pKLP110 and the e. coli jm109/pSEP110 that make up among the e. coli jm109/pPRP100, the embodiment 24 that make up among the embodiment 23 are inoculated in the L substratum (50ml) that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.By centrifugal, from these cultures, gather in the crops microorganism cells, with physiological saline washing 1 time.With microorganism cells be suspended in the 100mM potassium phosphate buffer (5ml, pH7.0) in, by at 20 minutes smudge cellses of 4 ℃ of following supersound process.Solution after the centrifugal treating to remove insoluble part, prepares cell-free extract thus.
The commentaries on classics phosphoric acid activity of the cell-free extract that measure to obtain, the contrast of Shi Yonging simultaneously are from this Tuo Shi Providence ATCC 29851, enteroaerogen IFO 12010, Klebsiellaplanticola IFO 14939, Serrtia ficaria IAM 13540 with by the e. coli jm109 of above-mentioned same procedure with plasmid pUC118 conversion.The results are shown in the table 16.In all wild type strains, commentaries on classics phosphoric acid activity is all low.Not detecting in e. coli jm109/pUC118 changes the phosphoric acid activity.On the other hand, compare with wild type strain, all e. coli jm109 transformant that import acid phosphatase gene show the high phosphoric acid activity of changeing.According to this result, prove that the dna segment of each importing all makes intestinal bacteria express acid phosphatase high-levelly.
Table 16
Microorganism strains changes the phosphoric acid activity
(unit/mg)
This Tuo Shi Providence ATCC 29,851 0.005
Enteroaerogen IFO 12,010 0.002
Klebsiella?planticola?IFO?14939????0.002
Serrtia?ficaria?IAM?13540??????????0.001
E. coli jm109/pUC118 does not detect
E. coli jm109/pPRP100 0.833
E. coli jm109/pENP110 0.301
E. coli jm109/pKLP110 0.253
E. coli jm109/pSEP110 0.123 embodiment 26
The preparation of the mutant acid phosphatase gene that temperature stability improves
Described as embodiment 20,21 and 22, the bacterial strain that contains the mutant acid phosphatase gene that derives from the blattae escherich's bacillus that produces among the embodiment 19 is expressed the acid phosphatase of a great deal of.In with the process of this bacterial strain, generate and accumulate 5 '-t-inosinic acid with high conversion by tetra-sodium and inosine production 5 '-t-inosinic acid.The optimal reactive temperature of this acid phosphatase is 35 ℃.Yet this is reflected at when carrying out under the comparatively high temps, and speed of reaction increases, and when increasing the concentration of phosphate acceptors nucleosides in reaction soln, carries out this reaction.Therefore, we estimate that nucleosides-5 '-phosphoric acid ester can be produced within a short period of time more efficiently.Therefore, by with PCR site-specific nature sudden change method, with sudden change import clone among the embodiment 19 derive from the acid phosphatase gene of Esherichia blattae the time, improved the temperature stability of this enzyme.
Use contains the plasmid pEPI380 of the mutant acid phosphatase enzyme coding gene of describing among the embodiment 19 that derives from Esherichia blattae JCM1650, use the genetic engineering method, the site-specific nature sudden change is imported in this plasmid DNA, produce the encoding gene of the mutant acid phosphatase of temperature stability raising.PEPI380 is connected the plasmid DNA that obtains by the 2.4kbp dna segment that will contain the mutant acid phosphatase enzyme coding gene that derives from Esherichia blattae JCM1650, shear with restriction enzyme ClaI and BamHI with pBluescript KS (+) (by Stratagene production) with ClaI and BamHI shearing.The amino-acid sequence of the maturation protein that is drawn by the base sequence of this acid phosphatase enzyme coding gene is speculated as 11 amino-acid residues shown in the table 12 of embodiment 19, represents with the order of the SEQ ID NO:8 of sequence list.
With phosphinylidyne aminate method, use synthetic oligonucleotide MUT300 (the SEQID NO:9 in the sequence list), MUT400 (the SEQ ID NO:29 in the sequence list) and the MUT410 (the SEQ ID NO:30 in the sequence list) of dna synthesizer (394 types of Applied Biosystems supply) with order shown in the sequence list.
Press the method for embodiment 15 with the PCR method, the pEPI380 that uses embodiment 19 descriptions is as template, import sudden change with MUT300 and MUT410 as primer, produce the mutated genes of encoding mutant type Phosphoric acid esterase, wherein the 104th of maturation protein the glutaminic acid residue (GAG) glycine residue (GG *T *) substitute.The plasmid called after pEPI410 that contains this mutated genes.Similarly, pEPI380 is as template in use, imports sudden change with MUT300, MUT310 and MUT420 as primer, produces the mutated genes of encoding mutant type Phosphoric acid esterase, wherein the 151st threonine residues (ACC) alanine residue (G *CC) substitute.The plasmid called after pEPI420 that contains this mutated genes.
Contain the e. coli jm109 transformant of the plasmid pEPI410 of mutant type phosphatase gene and pEPI420 from importing, prepare plasmid with alkali bacterium cracking process, measure base sequence, oneself is replaced to identify the purpose base.
Each that imports among the e. coli jm109/pEPI380 that describes among the e. coli jm109/pEPI410 of the mutant acid phosphatase gene for preparing in the present embodiment and e. coli jm109/pEPI420 and the embodiment 19 is inoculated in the 50ml L substratum that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.Harvested cell from the 50ml nutrient solution of each bacterial strain is with normal saline solution washing 1 time.With these cell suspensions in 5ml 100mM phosphate buffered saline buffer (pH7.0), 4 ℃ of following supersound process 20 minutes, with smudge cells.The solution of centrifugal processing like this is to remove insoluble part, the preparation cell-free extract.
From the insulation 30 minutes under 0-80 ℃, pH7.0 of the cell-free extract of each bacterial strain preparation.After insulation was finished, under pH4.0,30 ℃ standard reaction condition down, being used in the cell-free extract of handling under the differing temps changeed phosphoric acid, the mensuration residual activity.The results are shown among Figure 13.The mutant enzyme of expressing among the e. coli jm109/pEPI380 that describes in embodiment 19 is stable in 40 ℃ of processing of 30 minutes, but observes its active reduction under comparatively high temps.On the contrary, the New-mutant enzyme of expressing among the e. coli jm109/pEPI410 of the New-mutant enzyme gene that produces in importing present embodiment and the e. coli jm109/pEPI420 has improved temperature stability, even handled 30 minutes at 50 ℃, also do not observe active reduction.Therefore we estimate, when using these bacterial strains at high temperature to produce nucleosides-5 '-phosphoric acid ester, productivity further improves.Embodiment 27
Bacterial strain with the mutant acid phosphatase gene that contains the temperature stability raising
Produce 5 '-t-inosinic acid and 5 '-guanylic acid
Each that imports among the e. coli jm109/pEPI380 that describes among the intestinal bacteria JMI09/pEPI410 of mutant acid phosphatase gene and e. coli jm109/pEPI420 and the embodiment 19 is inoculated in the 50ml L substratum that contains 100 μ g/ml penbritins and 1mM IPTG, cultivated 16 hours at 37 ℃.
Tetra-sodium (15g/dl) and 8g/dl inosine or guanosine are dissolved in the acetate buffer (pH4.0).Add the e. coli jm109 bacterial strain that has imported every kind of mutant acid phosphatase gene, feasible cell concn according to the dry cell weight meter reaches 100mg/dl.Be reflected at and carried out under 50 9 hours, simultaneously pH is remained on 4.0, measure the amount of 5 '-t-inosinic acid or the 5 '-guanylic acid that generates.The results are shown in the table 17.The nucleotide phosphate that generates has only nucleosides-5 '-phosphoric acid ester, does not observe nucleosides-2 '-phosphoric acid ester and nucleosides-3 '-phosphoric acid ester production of by-products at all.Reaction was also carried out under 35 12 hours, with e. coli jm109/the pEPI380 bacterial strain in contrast.The result also is shown in Table 17.
As described in embodiment 21, generate and accumulate nucleosides-5 '-phosphoric acid ester efficiently with e. coli jm109/pEPI380.On the contrary, e. coli jm109/pEPI410 and e. coli jm109/pEPI420 with the New-mutant acid phosphatase gene that derives from Esherichiablattae that has imported embodiment 26 preparations react, and generate and accumulate 5 '-t-inosinic acid or the 5 '-guanylic acid of equivalent within a short period of time.Therefore, can more effectively produce nucleosides-5 '-phosphoric acid ester.Especially when using e. coli jm109/pEPI420, not only the reaction times shortens, and accumulates 5 '-t-inosinic acid and 5 '-guanylic acid in a large number, shows quite high productivity.
Table 17
Bacterial strain Temperature of reaction (℃) Reaction times (hr) The amount (g/dl) of the 5 '-t-inosinic acid that generates The amount (g/dl) of the 5 '-guanylic acid that generates
E. coli jm109/pEPI380 ????30 ????12 ????12.05 ????5.78
E. coli jm109/pEPI410 ????50 ????9 ????11.85 ????5.80
E. coli jm109/pEPI420 ????50 ????9 ????12.60 ????6.11
Fig. 1 has described reaction pH and the relation between the generation of 5 '-t-inosinic acid in the reaction of carrying out with the enzyme that derives from morganella morganii strain.
Fig. 2 has described reaction pH and the relation between the generation of 5 '-t-inosinic acid in the reaction of carrying out with the enzyme that derives from Esherichia blattae.
Fig. 3 has described the pulsating restriction map spectrum of the morganella morganii strain chromosomal DNA that contains the acid phosphatase enzyme coding gene.
Fig. 4 has described the generation of 5 '-t-inosinic acid in the reaction of carrying out with the bacterial strain that comprises the acid phosphatase gene that derives from morganella morganii strain.
Fig. 5 has described the pulsating restriction map spectrum of the Esherichia blattae chromosomal DNA that contains the acid phosphatase enzyme coding gene.
The figure that Fig. 6 describes is illustrated in the generation of 5 '-t-inosinic acid in the reaction of carrying out with the bacterial strain that comprises the acid phosphatase gene that derives from Esherichia blattae.
Fig. 7 has described the generation of 5 '-t-inosinic acid in the reaction of carrying out with bacterial strain that comprises the wild-type acid phosphatase gene and the bacterial strain that comprises the mutant acid phosphatase gene that derives from Esherichia blattae respectively.
Fig. 8 has described the generation of 5 '-t-inosinic acid in the reaction of carrying out with the bacterial strain that comprises the New-mutant acid phosphatase gene that derives from Esherichia blattae.
Fig. 9 has described the pulsating restriction map spectrum of chromosomal DNA that contains the acid phosphatase enzyme coding gene, derives from enteroaerogen.
Figure 10 has described the pulsating restriction map spectrum of chromosomal DNA that contains the acid phosphatase enzyme coding gene, derives from Planticola Cray Bai Shi bacillus.
Figure 11 has described the pulsating restriction map spectrum of chromosomal DNA that contains the acid phosphatase enzyme coding gene, derives from Serratia ficaria.
Figure 12 has described the amino-acid sequence that the nucleotide sequence by the acid phosphatase that derives from morganella morganii strain, Esherichia blattae, this Tuo Shi Providence, enteroaerogen, Planticola Cray Bai Shi bacillus and Serratia ficaria draws, with amino-acid residue of a letter representation.These amino-acid sequences are described in the SEQ ID NO:4,8,22,24,26 and 28 of a preface table, with amino-acid residue of three letter representations.In the figure, identical amino-acid residue is used the * mark under order in all amino-acid sequences.
Figure 13 has described in the cell-free extract for preparing from the bacterial strain that comprises the New-mutant acid phosphatase gene that derives from Esherichia blattae, the temperature-stable linearity curve of activity of acid phosphatase.
Sequence list
The data of SEQ ID NO:1:
(i) sequential nature
(A) length: 20 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: polypeptide
(v) protein fragments type: N-end
(vi) originate:
(A) organism: morganella morganii strain
(B) bacterial strain: NICMB 10466
(xi) order is described: SEQ ID NO:1:Ala Ile Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro Asp Leu Tyr Tyr 15 10 15 Leu Lys Asn Glu
20
The data of SEQ ID NO:2:
(i) sequential nature
(A) length: 750 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: morganella morganii strain
(B) bacterial strain: NICMB 10466
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...747
(ix) feature:
(A) title/keyword: signal peptide
(B) position: 1...60
(ix) feature:
(A) title/keyword: mature polypeptide
(B) position: 61...747
(xi) order is described: SEQ ID NO:2:ATG AAG AAG AAT ATT ATC GCC GGT TGT CTG TTC TCA CTG TTT TCC CTT 48Met Lys Lys Asn Ile Ile Ala Gly Cys Leu Phe Ser Leu Phe Ser Leu-20-15-10-5TCC GCG CTG GCC GCG ATC CCG GCG GGC AAC GAT GCC ACC ACC AAG CCG 96Ser Ala Leu Ala Ala Ile Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
1???????????????5??????????????????10GAT?TTA?TAT?TAT?CTG?AAA?AAT?GAA?CAG?GCT?ATC?GAC?AGC?CTG?AAA?CTG??????144Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Glu?Gln?Ala?Ile?Asp?Ser?Leu?Lys?Leu
15??????????????????20??????????????????25TTA?CCG?CCA?CCG?CCG?GAA?GTC?GGC?AGT?ATT?CAG?TTT?TTA?AAT?GAT?CAG??????192Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Gln?Phe?Leu?Asn?Asp?Gln
30??????????????????35??????????????????40GCA?ATG?TAT?GAG?AAA?GGC?CGT?ATG?CTG?CGC?AAT?ACC?GAG?CGC?GGA?AAA??????240Ala?Met?Tyr?Glu?Lys?Gly?Arg?Met?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?45??????????????????50??????????????????55??????????????????60CAG?GCA?CAG?GCA?GAT?GCT?GAC?CTG?GCC?GCA?GGG?GGT?GTG?GCA?ACC?GCA??????288Gln?Ala?Gln?Ala?Asp?Ala?Asp?Leu?Ala?Ala?Gly?Gly?Val?Ala?Thr?Ala
65??????????????????70??????????????????75TTT?TCA?GGG?GCA?TTC?GGC?TAT?CCG?ATA?ACC?GAA?AAA?GAC?TCT?CCG?GAG??????336Phe?Ser?Gly?Ala?Phe?Gly?Tyr?Pro?Ile?Thr?Glu?Lys?Asp?Ser?Pro?Glu
80??????????????????85??????????????????90CTG?TAT?AAA?CTG?CTG?ACC?AAT?ATG?ATT?GAG?GAT?GCC?GGT?GAT?CTT?GCC??????384Leu?Tyr?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
95?????????????????100?????????????????105ACC?CGC?TCC?GCC?AAA?GAA?CAT?TAC?ATG?CGC?ATC?CGG?CCG?TTT?GCG?TTT??????432Thr?Arg?Ser?Ala?Lys?Glu?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
110?????????????????115?????????????????120TAC?GGC?ACA?GAA?ACC?TGT?AAT?ACC?AAA?GAT?CAG?AAA?AAA?CTC?TCC?ACC??????480Tyr?Gly?Thr?Glu?Thr?Cys?Asn?Thr?Lys?Asp?Gln?Lys?Lys?Leu?Ser?Thr125?????????????????130?????????????????135?????????????????140AAC?GGA?TCT?TAC?CCG?TCA?GGT?CAT?ACG?TCT?ATC?GGC?TGG?GCA?ACC?GCA??????528Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
145?????????????????150?????????????????155CTG?GTG?CTG?GCG?GAA?GTG?AAC?CCG?GCA?AAT?CAG?GAT?GCG?ATT?CTG?GAA??????576Leu?Val?Leu?Ala?Glu?Val?Asn?Pro?Ala?Asn?Gln?Asp?Ala?Ile?Leu?Glu
160?????????????????165?????????????????170CGG?GGT?TAT?CAG?CTC?GGA?CAG?AGC?CGG?GTG?ATT?TGC?GGC?TAT?CAC?TGG??????624Arg?Gly?Tyr?Gln?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
175?????????????????180?????????????????185CAG?AGT?GAT?GTG?GAT?GCC?GCG?CGG?ATT?GTC?GGT?TCA?GCC?GCT?GTC?GCG??????672Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Ala?Val?Ala
190?????????????????195?????????????????200ACA?TTA?CAT?TCC?GAT?CCG?GCA?TTT?CAG?GCG?CAG?TTA?GCG?AAA?GCC?AAA??????720Thr?Leu?His?Ser?Asp?Pro?Ala?Phe?Gln?Ala?Gln?Leu?Ala?Lys?Ala?Lys205?????????????????210?????????????????215?????????????????220CAG?GAA?TTT?GCA?CAA?AAA?TCA?CAG?AAA?TAA??????????????????????????????750Gln?Glu?Phe?Ala?Gln?Lys?Ser?Gln?Lys
The data of 225 229SEQ ID NO:3:
(i) sequential nature
(A) length: 249 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: morganella morganii strain
(B) bacterial strain: NICMB 10466
(xi) order is described: SEQ ID NO:3:Met Lys Lys Asn Ile Ile Ala Gly Cys Leu Phe Ser Leu Phe Ser Leu-20-15-10-5Ser Ala Leu Ala Ala Ile Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
1???????????????5??????????????????10Asp?Leu?Tyr?Tyr?Leu?Lys?Ash?Glu?Gln?Ala?Ile?Asp?Ser?Leu?Lys?Leu
15??????????????????20??????????????????25Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Gln?Phe?Leu?Asn?Asp?Gln
30??????????????????35??????????????????40Ala?Met?Tyr?Glu?Lys?Gly?Arg?Met?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?45??????????????????50??????????????????55??????????????????60Gln?Ala?Gln?Ala?Asp?Ala?Asp?Leu?Ala?Ala?Gly?Gly?Val?Ala?Thr?Ala
65??????????????????70??????????????????75Phe?Ser?Gly?Ala?Phe?Gly?Tyr?Pro?Ile?Thr?Glu?Lys?Asp?Ser?Pro?Glu
80??????????????????85??????????????????90Leu?Tyr?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
95?????????????????100?????????????????105Thr?Arg?Ser?Ala?Lys?Glu?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
110?????????????????115?????????????????120Tyr?Gly?Thr?Glu?Thr?Cys?Asn?Thr?Lys?Asp?Gln?Lys?Lys?Leu?Ser?Thr125?????????????????130?????????????????135?????????????????140Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
145?????????????????150?????????????????155Leu?Val?Leu?Ala?Glu?Val?Asn?Pro?Ala?Asn?Gln?Asp?Ala?Ile?Leu?Glu
160?????????????????165?????????????????170Arg?Gly?Tyr?Gln?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
175?????????????????180?????????????????185Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Ala?Val?Ala
190?????????????????195?????????????????200Thr?Leu?His?Ser?Asp?Pro?Ala?Phe?Gln?Ala?Gln?Leu?Ala?Lys?Ala?Lys205?????????????????210?????????????????215?????????????????220Gln?Glu?Phe?Ala?Gln?Lys?Ser?Gln?Lys
The data of 225 229SEQ ID NO:4:
(i) sequential nature
(A) length: 229 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: morganella morganii strain
(B) bacterial strain NICMB 10466 (xi) order is described: SEQ ID NO:4:Ala Ile Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro Asp Leu Tyr Tyr 15 10 15Leu Lys Asn Glu Gln Ala Ile Asp Ser Leu Lys Leu Leu Pro Pro Pro
20??????????????????25??????????????????30Pro?Glu?Val?Gly?Ser?Ile?Gln?Phe?Leu?Asn?Asp?Gln?Ala?Met?Tyr?Glu
35??????????????????40??????????????????45Lys?Gly?Arg?Met?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?Gln?Ala?Gln?Ala
50??????????????????55??????????????????60Asp?Ala?Asp?Leu?Ala?Ala?Gly?Gly?Val?Ala?Thr?Ala?Phe?Ser?Gly?Ala?65??????????????????70??????????????????75??????????????????80Phe?Gly?Tyr?Pro?Ile?Thr?Glu?Lys?Asp?Ser?Pro?Glu?Leu?Tyr?Lys?Leu
85??????????????????90??????????????????95Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala?Thr?Arg?Ser?Ala
100?????????????????105?????????????????110Lys?Glu?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe?Tyr?Gly?Thr?Glu
115?????????????????120?????????????????125Thr?Cys?Asn?Thr?Lys?Asp?Gln?Lys?Lys?Leu?Ser?Thr?Asn?Gly?Ser?Tyr
130?????????????????135?????????????????140Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala?Leu?Val?Leu?Ala145?????????????????150?????????????????155?????????????????160Glu?Val?Asn?Pro?Ala?Asn?Gln?Asp?Ala?Ile?Leu?Glu?Arg?Gly?Tyr?Gln
165?????????????????170?????????????????175Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp?Gln?Ser?Asp?Val
180?????????????????185?????????????????190Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Ala?Val?Ala?Thr?Leu?His?Ser
195?????????????????200?????????????????205Asp?Pro?Ala?Phe?Gln?Ala?Gln?Leu?Ala?Lys?Ala?Lys?Gln?Glu?Phe?Ala
The data of 210 215 220Gln Lys Ser Gln Lys225 229SEQ ID NO:5:
(i) sequential nature
(A) length: 15 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: polypeptide
(v) protein fragments type: N-end
(vi) originate:
(A) organism Esherichia blattae
(B) bacterial strain: JCM 1650
(xi) order is described: the data of SEQ ID NO:5:Leu Ala Leu Val Ala Thr Gly Asn Asp Thr Thr Thr Lys Pro Asp Leu 15 10 15SEQ ID NO:6:
(i) sequential nature
(A) length: 750 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: Esherichia blattae
(B) bacterial strain: JCM 1650
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...747
(ix) feature:
(A) title/keyword: signal peptide
(B) position: 1...54
(ix) feature:
(A) title/keyword: mature polypeptide
(B) position: 55...747
(xi) order is described: SEQ ID NO:6:ATG AAA AAA CGT GTT CTG GCA GTT TGT TTT GCC GCA TTG TTC TCT TCT 48Met Lys Lys Arg Val Leu Ala Val Cys Phe Ala Ala Leu Phe Ser Ser-18-15-10-5CAG GCC CTG GCG CTG GTC GCT ACC GGC AAC GAC ACT ACC ACG AAA CCG 96Gln Ala Leu Ala Leu Val Ala Thr Gly Asn Asp Thr Thr Thr Lys Pro
1???????????????5???????????????????10GAT?CTC?TAC?TAC?CTC?AAG?AAC?AGT?GAA?GCC?ATT?AAC?AGC?CTG?GCG?CTG??????144Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ser?Glu?Ala?Ile?Asn?Ser?Leu?Ala?Leu15??????????????????20??????????????????25??????????????????30TTG?CCG?CCA?CCA?CCG?GCG?GTG?GGC?TCC?ATT?GCG?TTT?CTC?AAC?GAT?CAG??????192Leu?Pro?Pro?Pro?Pro?Ala?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
35??????????????????40??????????????????45GCC?ATG?TAT?GAA?CAG?GGG?CGC?CTG?CTG?CGC?AAC?ACC?GAA?CGC?GGT?AAG??????240Ala?Mer?Tyr?Glu?Gln?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys
50??????????????????55??????????????????60CTG?GCG?GCG?GAA?GAT?GCA?AAC?CTG?AGC?AGT?GGC?GGG?GTG?GCG?AAT?GCT??????288Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ser?Gly?Gly?Val?Ala?Asn?Ala
65??????????????????70??????????????????75TTC?TCC?GGC?GCG?TTT?GGT?AGC?CCG?ATC?ACC?GAA?AAA?GAC?GCC?CCG?GCG??????336Phe?Ser?Gly?Ala?Phe?Gly?Ser?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Ala
80??????????????????85??????????????????90CTG?CAT?AAA?TTA?CTG?ACC?AAT?ATG?ATT?GAG?GAC?GCC?GGG?GAT?CTG?GCG??????384Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala95??????????????????100?????????????????105?????????????????110ACC?CGC?AGC?GCG?AAA?GAT?CAC?TAT?ATG?CGC?ATT?CGT?CCG?TTC?GCG?TTT??????432Thr?Arg?Ser?Ala?Lys?Asp?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
115?????????????????120?????????????????125TAT?GGG?GTC?TCT?ACC?TGT?AAT?ACC?ACC?GAG?CAG?GAC?AAA?CTG?TCC?AAA??????480Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys
130?????????????????135?????????????????140AAT?GGC?TCT?TAT?CCG?TCC?GGG?CAT?ACC?TCT?ATC?GGC?TGG?GCT?ACT?GCG??????528Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
145?????????????????150?????????????????155CTG?GTG?CTG?GCA?GAG?ATC?AAC?CCT?CAG?CGC?CAG?AAC?GAG?ATC?CTG?AAA??????576Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
160?????????????????165?????????????????170CGC?GGT?TAT?GAG?CTG?GGC?CAG?AGC?CGG?GTG?ATT?TGC?GGC?TAC?CAC?TGG??????624Arg?Gly?Tyr?Glu?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp175?????????????????180?????????????????185?????????????????190CAG?AGT?GAT?GTG?GAT?GCC?GCG?CGG?GTA?GTG?GGA?TCT?GCC?GTT?GTG?GCG??????672Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Val?Val?Gly?Ser?Ala?Val?Val?Ala
195?????????????????200?????????????????205ACC?CTG?CAT?ACC?AAC?CCG?GCG?TTC?CAG?CAG?CAG?TTG?CAG?AAA?GCG?AAG??????720Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys
210?????????????????215?????????????????220GCC?GAA?TTC?GCC?CAG?CAT?CAG?AAG?AAA?TAA??????????????????????????????750Ala?Glu?Phe?Ala?Gln?His?Gln?Lys?Lys
225?????????????????230
The data of SEO ID NO:7:
(i) sequential nature
(A) length: 249 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: Esherichia blattae
(B) bacterial strain: JCM 1650
(xi) order is described: SEQ ID NO:7:Met Lys Lys Arg Val Leu Ala Val Cys Phe Ala Ala Leu Phe Ser Ser-18-15-10-5Gln Ala Leu Ala Leu Val Ala Thr Gly Asn Asp Thr Thr Thr Lys Pro
1???????????????5???????????????????10Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ser?Glu?Ala?Ile?Asn?Ser?Leu?Ala?Leu15??????????????????20??????????????????25??????????????????30Leu?Pro?Pro?Pro?Pro?Ala?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
35??????????????????40??????????????????45Ala?Met?Tyr?Glu?Gln?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys
50??????????????????55??????????????????60Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ser?Gly?Gly?Val?Ala?Asn?Ala
65??????????????????70??????????????????75Phe?Ser?Gly?Ala?Phe?Gly?Ser?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Ala
80??????????????????85??????????????????90Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala95??????????????????100?????????????????105?????????????????110Thr?Arg?Ser?Ala?Lys?Asp?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
115?????????????????120?????????????????125Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys
130?????????????????135?????????????????140Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
145?????????????????150?????????????????155Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
160?????????????????165?????????????????170Arg?Gly?Tyr?Glu?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp175????????????????180??????????????????185?????????????????190Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Val?Val?Gly?Ser?Ala?Val?Val?Ala
195????????????????200??????????????????205Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gin?Lys?Ala?Lys
210?????????????????215?????????????????220Ala?Glu?Phe?Ala?Gln?His?Gln?Lys?Lys
225?????????????????230
The data of SEQ ID NO:8:
(i) sequential nature
(A) length: 231 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: Esherichia blattae
(B) bacterial strain: JCM 1650
(xi) order is described: SEQ ID NO:8:Leu Ala Leu Val Ala Thr Gly Asn Asp Thr Thr Thr Lys Pro Asp Leu 15 10 15Tyr Tyr Leu Lys Asn Ser Glu Ala Ile Asn Ser Leu Ala Leu Leu Pro
20??????????????????25??????????????????30Pro?Pro?Pro?Ala?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln?Ala?Met
35??????????????????40??????????????????45Tyr?Glu?Gln?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?Leu?Ala
50??????????????????55??????????????????60Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ser?Gly?Gly?Val?Ala?Asn?Ala?Phe?Ser?65??????????????????70??????????????????75??????????????????80Gly?Ala?Phe?Gly?Ser?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Ala?Leu?His
85??????????????????90??????????????????95Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala?Thr?Arg
100?????????????????105?????????????????110Ser?Ala?Lys?Asp?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe?Tyr?Gly
115?????????????????120?????????????????125Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys?Asn?Gly
130?????????????????135?????????????????140Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala?Leu?Val145?????????????????150?????????????????155?????????????????160Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys?Arg?Gly
165?????????????????170?????????????????175Tyr?Glu?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp?Gln?Ser
180?????????????????185?????????????????190Asp?Val?Asp?Ala?Ala?Arg?Val?Val?Gly?Ser?Ala?Val?Val?Ala?Thr?Leu
195?????????????????200?????????????????205His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys?Ala?Glu
210?????????????????215?????????????????220Phe?Ala?Gln?His?Gln?Lys?Lys225?????????????????230
The data of SEQ ID NO:9:
(i) sequential nature
(A) length: 20 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: SEQ ID NO:9:CCTCGAGGTC GACGGTATCG 20
The data of SEQ ID NO:10:
(i) sequential nature
(A) length: 21 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: be
(xi) order is described: SEQ ID NO:10:ATTCGCCACA TCGCCACTGC T 21
The data of SEQ ID NO:11:
(i) sequential nature
(A) length: 22 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:11:TAGCCCAGCC GGTAGAGGTA TGSEQ ID NO:12:
(i) sequential nature
(A) length: 23 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:12:TGCATCTGCC TGCGCCTGCT TACSEQ ID NO:13:
(i) sequential nature
(A) length: 20 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:13:AACGCGCCGT AGAAAGCATTSEQ ID NO:14:
(i) sequential nature
(A) length: 21 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:14:GTCCTGGTCT TTGGTATTAC ASEQ ID NO:15:
(i) sequential nature
(A) length: 26 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:15:CACATCGCCA GCGGCCAGGT CTGCATSEQ ID NO:16:
(i) sequential nature
(A) length: 21 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:16:GCATATAGTG TTCTTTCGCG CSEQ ID NO:17:
(i) sequential nature
(A) length: 22 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:17:ATTACAGGTT TCGACCCCAT AASEQ ID NO:18:
(i) sequential nature
(A) length: 25 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:18:TGATGCATGT CCGGGCTGTC TTTTTSEQ ID NO:19:
(i) sequential nature
(A) length: 25 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: be
(xi) order is described: the data of SEQ ID NO:19:CTGGATCCTG TGGCTATCAT CACCT 25SEQ ID NO:20:
(i) sequential nature
(A) length: 25 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: the data of SEQ ID NO:20:CTGGATCCGA CGCGATTTTA CCATA 25SEQ ID NO:21:
(i) sequential nature
(A) length: 747 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: this Tuo Shi Providence
(B) bacterial strain: ATCC29851
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...744
(xi) order is described: SEQ ID NO:21:ATG AAA AAA CTA TTA GCA GTA TTC TGC GCA GGG GCT TTT GTT TCA ACC 48Met Lys Lys Leu Leu Ala Val Phe Cys Ala Gly Ala Phe Val Ser Thr 15 10 15AGT GTA TTT GCG GCG ATC CCT CCC GGC AAT GAT GTG ACA ACT AAA CCC 96Ser Val Phe Ala Ala Ile Pro Pro Gly Asn Asp Val Thr Thr Lys Pro
20??????????????????25??????????????????30GAT?CTT?TAT?TAT?TTA?AAA?AAC?TCA?CAG?GCT?ATT?GAT?AGT?TTA?GCG?TTA??????144Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ser?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45TTG?CCG?CCA?CCA?CCT?GAA?GTG?GGC?AGT?ATC?TTA?TTT?TTA?AAC?GAC?CAA??????192Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Leu?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60GCG?ATG?TAT?GAA?AAA?GGC?CGT?TTA?TTG?CGA?AAT?ACT?GAG?CGT?GGA?GAA??????240Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Glu?65??????????????????70??????????????????75??????????????????80CAA?GCC?GCT?AAG?GAT?GCT?GAT?CTG?GCT?GCG?GGC?GGT?GTT?GCG?AAC?GCA??????288Gln?Ala?Ala?Lys?Asp?Ala?Asp?Leu?Ala?Ala?Gly?Gly?Val?Ala?Asn?Ala
85??????????????????90??????????????????95TTT?TCT?GAA?GCT?TTT?GGT?TAT?CCC?ATT?ACC?GAA?AAG?GAT?GCG?CCT?GAA??????336Phe?Ser?Glu?Ala?Phe?Gly?Tyr?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Glu
100?????????????????105?????????????????110ATT?CAT?AAA?TTG?CTG?ACG?AAT?ATG?ATT?GAA?GAT?GCG?GGG?GAT?TTA?GCA??????384Ile?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115????????????????120??????????????????125ACT?CGC?TCA?GCC?AAA?GAG?AAA?TAC?ATG?CGC?ATT?CGT?CCA?TTT?GCG?TTC??????432Thr?Arg?Ser?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135?????????????????140TAC?GGT?GTT?GCT?ACC?TGT?AAC?ACG?AAA?GAT?CAG?GAC?AAA?TTA?TCT?AAG??????480Tyr?Gly?Val?Ala?Thr?Cys?Asn?Thr?Lys?Asp?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150?????????????????155?????????????????160AAT?GGC?TCT?TAT?CCT?TCT?GGA?CAC?ACC?GCA?ATT?GGC?TGG?GCA?TCT?GCA??????528Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ala?Ile?Gly?Trp?Ala?Ser?Ala
165?????????????????170?????????????????175CTC?GTA?TTG?TCA?GAA?ATT?AAC?CCA?GAA?AAC?CAA?GAT?AAA?ATT?TTA?AAA??????576Leu?Val?Leu?Ser?Glu?Ile?Asn?Pro?Glu?Asn?Gln?Asp?Lys?Ile?Leu?Lys
180?????????????????185?????????????????190CGT?GGT?TAT?GAA?CTT?GGC?CAA?AGC?CGA?GTC?ATC?TGT?GGT?TAC?CAT?TGG??????624Arg?Gly?Tyr?Glu?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205CAA?AGT?GAT?GTT?GAT?GCA?GCT?CGT?ATC?GTT?GCA?TCG?GGT?GCG?GTA?GCA??????672Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Ala?Ser?Gly?Ala?Val?Ala
210?????????????????215?????????????????220ACT?TTA?CAC?TCC?AAC?CCT?GAA?TTC?CAA?AAA?CAG?TTA?CAA?AAA?GCC?AAA??????720Thr?Leu?His?Ser?Asn?Pro?Glu?Phe?Gln?Lys?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240GAC?GAA?TTT?GCT?AAA?CTG?AAA?AAA?TAG??????????????????????????????????747Asp?Glu?Phe?Ala?Lys?Leu?Lys?Lys
245
The data of SEQ ID NO:22:
(i) sequential nature
(A) length: 248 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: this Tuo Shi Providence
(B) bacterial strain: ATCC 29851
(xi) order is described: SEQ ID NO:22:Met Lys Lys Leu Leu Ala Val Phe Cys Ala Gly Ala Phe Val Ser Thr 15 10 15Ser Val Phe Ala Ala Ile Pro Pro Gly Asn Asp Val Thr Thr Lys Pro
20??????????????????25??????????????????30Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ser?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Leu?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Glu?65??????????????????70??????????????????75??????????????????80Gln?Ala?Ala?Lys?Asp?Ala?Asp?Leu?Ala?Ala?Gly?Gly?Val?Ala?Asn?Ala
85??????????????????90??????????????????95Phe?Ser?Glu?Ala?Phe?Gly?Tyr?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Glu
100?????????????????105?????????????????110Ile?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115?????????????????120?????????????????125Thr?Arg?Ser?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135?????????????????140Tyr?Gly?Val?Ala?Thr?Cys?Asn?Thr?Lys?Asp?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150?????????????????155?????????????????160Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ala?Ile?Gly?Trp?Ala?Ser?Ala
165?????????????????170?????????????????175Leu?Val?Leu?Ser?Glu?Ile?Asn?Pro?Glu?Asn?Gln?Asp?Lys?Ile?Leu?Lys
180?????????????????185?????????????????190Arg?Gly?Tyr?Glu?Leu?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Ala?Ser?Gly?Ala?Val?Ala
210?????????????????215?????????????????220Thr?Leu?His?Ser?Asn?Pro?Glu?Phe?Gln?Lys?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240Asp?Glu?Phe?Ala?Lys?Leu?Lys?Lys
245
The data of SEQ ID NO:23:
(i) sequential nature
(A) length: 744 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: enteroaerogen
(B) bacterial strain: IFO 12010
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...744
(xi) order is described: SEQ ID NO:23:ATG AAA AAG CGC GTT CTC GCC CTC TGC CTC GCC AGC CTG TTT TCC GTT 48Met Lys Lys Arg Val Leu Ala Leu Cys Leu Ala Ser Leu Phe Ser Val 15 10 15AAC GCT TTC GCG CTG GTC CCT GCC GGC AAT GAT GCA ACC ACC AAA CCG 96Asn Ala Phe Ala Leu Val Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
20??????????????????25??????????????????30GAT?CTC?TAT?TAT?CTG?AAA?AAT?GCA?CAG?GCC?ATC?GAT?AGT?CTG?GCG?CTG??????144Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ala?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45TTG?CCG?CCG?CCG?CCG?GAA?GTT?GGC?AGC?ATC?GCA?TTT?TTA?AAC?GAT?CAG??????192Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60GCG?ATG?TAT?GAG?AAA?GGA?CGG?CTG?TTG?CGC?AAT?ACC?GAA?CGT?GGC?AAG??????240Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?65??????????????????70??????????????????75??????????????????80CTG?GCG?GCT?GAA?GAT?GCT?AAC?CTG?AGC?GCC?GGC?GGC?GTC?GCG?AAT?GCC??????288Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ala?Gly?Gly?Val?Ala?Asn?Ala
85??????????????????90??????????????????95TTC?TCC?AGC?GCT?TTT?GGT?TCG?CCC?ATC?ACC?GAA?AAA?GAC?GCG?CCG?CAG??????336Phe?Ser?Ser?Ala?Phe?Gly?Ser?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Gln
100?????????????????105?????????????????1l0TTA?CAT?AAG?CTG?CTG?ACA?AAT?ATG?ATT?GAG?GAT?GCC?GGC?GAT?CTG?GCC??????384Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115?????????????????120?????????????????125ACC?CGC?AGC?GCG?AAA?GAG?AAA?TAT?ATG?CGC?ATT?CGC?CCG?TTT?GCG?TTC??????432Thr?Arg?Ser?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135?????????????????140TAC?GGC?GTT?TCA?ACC?TGT?AAC?ACT?ACC?GAG?CAG?GAC?AAG?CTG?TCG?AAA??????480Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150?????????????????155?????????????????160AAC?GGA?TCT?TAC?CCT?TCC?GGC?CAT?ACC?TCT?ATC?GGT?TGG?GCA?ACC?GCG??????528Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
165?????????????????170?????????????????175CTG?GTA?CTG?GCG?GAG?ATC?AAT?CCG?CAG?CGG?CAA?AAC?GAA?ATT?CTC?AAA??????576Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
180?????????????????185?????????????????190CGC?GGC?TAT?GAA?TTG?GGC?GAA?AGC?CGG?GTT?ATC?TGC?GGC?TAT?CAT?TGG??????624Arg?Gly?Tyr?Glu?Leu?Gly?Glu?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205CAG?AGC?GAT?GTC?GAT?GCG?GCG?CGG?ATA?GTC?GGC?TCG?GCG?GTG?GTG?GCG??????672Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Val?Val?Ala
210?????????????????215?????????????????220ACC?CTG?CAT?ACC?AAC?CCG?GCC?TTC?CAA?CAG?CAG?TTG?CAG?AAA?GCA?AAG??????720Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240GAT?GAA?TTC?GCC?AAA?ACG?CAG?AAG?TAA??????????????????????????????????747Asp?Glu?Phe?Ala?Lys?Thr?Gln?Lys
245
The data of SEQ ID NO:24:
(i) sequential nature
(A) length: 248 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: enteroaerogen
(B) bacterial strain: IFO 12010
(xi) order is described: SEQ ID NO:24:Met Lys Lys Arg Val Leu Ala Leu Cys Leu Ala Ser Leu Phe Ser Val 15 10 15Asn Ala Phe Ala Leu Val Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
20???????????????????25??????????????????30Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ala?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Asn?Thr?Glu?Arg?Gly?Lys?65??????????????????70??????????????????75??????????????????80Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ala?Gly?Gly?Val?Ala?Asn?Ala
85??????????????????90??????????????????95Phe?Ser?Ser?Ala?Phe?Gly?Ser?Pro?Ile?Thr?Glu?Lys?Asp?Ala?Pro?Gln
100?????????????????105?????????????????110Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115?????????????????120?????????????????125Thr?Arg?Ser?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135?????????????????140Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150?????????????????155?????????????????160Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
165?????????????????170?????????????????175Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
180?????????????????185?????????????????190Arg?Gly?Tyr?Glu?Leu?Gly?Glu?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Val?Val?Ala
210?????????????????215?????????????????220Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240Asp?Glu?Phe?Ala?Lys?Thr?Gln?Lys
The data of 245SEQ ID NO:25:
(i) sequential nature
(A) length: 747 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: Klebsiella planticola
(B) bacterial strain: IFO 14939
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...747
(xi) order is described: SEQ ID NO:25:ATG AAA AAG CGT GTA CTC GCC CTT TGC CTT GCC AGC CTC TTT TCA GTT 48Met Lys Lys Arg Val Leu Ala Leu Cys Leu Ala Ser Leu Phe Ser Val 15 10 15AGC GCC TTT GCG CTG GTT CCC GCC GGC AAT GAT GCC ACC ACC AAG CCC 96Ser Ala Phe Ala Leu Val Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
20??????????????????25??????????????????30GAT?CTC?TAC?TAT?CTG?AAA?AAT?GCC?CAG?GCC?ATT?GAC?AGC?CTG?GCG?CTG??????144Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ala?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45TTG?CCA?CCG?CCG?CCG?GAA?GTG?GGC?AGC?ATT?GCG?TTT?TTA?AAC?GAT?CAG??????192Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60GCG?ATG?TAT?GAG?AAA?GGC?CGT?CTG?CTG?CGC?GCC?ACC?GCC?CGC?GGC?AAG??????240Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Ala?Thr?Ala?Arg?Gly?Lys?65??????????????????70??????????????????75??????????????????80TTG?GCG?GCA?GAA?GAT?GCC?AAC?CTG?AGC?GCG?GGT?GGC?GTG?GCC?AAC?GCC??????288Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ala?Gly?Gly?Val?Ala?Asn?Ala
85?????????????????90???????????????????95TTC?TCC?GCA?GCA?TTC?GGC?TCC?CCG?ATC?AGC?GAA?AAA?GAC?GCC?CCG?GCG??????336Phe?Ser?Ala?Ala?Phe?Gly?Ser?Pro?Ile?Ser?Glu?Lys?Asp?Ala?Pro?Ala
100?????????????????105?????????????????110CTG?CAC?AAA?CTG?CTC?ACC?AAC?ATG?ATT?GAA?GAC?GCG?GGC?GAT?CTG?GCG??????384Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115?????????????????120?????????????????125ACC?CGA?GGC?GCG?AAA?GAG?AAG?TAT?ATG?CGT?ATT?CGT?CCG?TTT?GCC?TTC??????432Thr?Arg?Gly?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135?????????????????140TAC?GGC?GTG?TCC?ACC?TGC?AAT?ACC?ACC?GAA?CAG?GAT?AAG?CTG?TCG?AAA??????480Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150????????????????155?????????????????160AAC?GGC?TCC?TAC?CCT?TCC?GGA?CAC?ACC?TCT?ATC?GGC?TGG?GCG?ACC?GCC?????528Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
165?????????????????170?????????????????175CTG?GTG?CTG?GCC?GAA?ATC?AAC?CCG?CAG?CGC?CAG?AAT?GAG?ATT?CTC?AAG??????576Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
180?????????????????185?????????????????190???????CGC?GGC?TAT?GAG?CTC?GGT?GAA?AGT?CGG?GTG?ATC?TGC?GGT?TAC?CAC?TGG??????624Arg?Gly?Tyr?Glu?Leu?Gly?Glu?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205CAG?AGC?GAT?GTT?GAC?GCC?GCG?CGG?ATT?GTC?GGC?TCG?GCG?GTG?GTT?GCA??????672Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Val?Val?Ala
210?????????????????215?????????????????220ACC?CTG?CAT?ACC?AAT?CCG?GCC?TTC?CAG?CAG?CAG?CTG?CAA?AAA?GCC?AAA??????720Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240GAC?GAG?TTT?GCG?AAA?CAG?CAG?AAA?TAG??????????????????????????????????747Asp?Glu?Phe?Ala?Lys?Gln?Gln?Lys
245
The data of SEQ ID NO:26:
(i) sequential nature
(A) length: 248 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: Klebsiella planticola
(B) bacterial strain: IFO 14939
(xi) order is described: SEQ ID NO:26:Met Lys Lys Arg Val Leu Ala Leu Cys Leu Ala Ser Leu Phe Ser Val 15 10 15Ser Ala Phe Ala Leu Val Pro Ala Gly Asn Asp Ala Thr Thr Lys Pro
20??????????????????25??????????????????30Asp?Leu?Tyr?Tyr?Leu?Lys?Asn?Ala?Gln?Ala?Ile?Asp?Ser?Leu?Ala?Leu
35??????????????????40??????????????????45Leu?Pro?Pro?Pro?Pro?Glu?Val?Gly?Ser?Ile?Ala?Phe?Leu?Asn?Asp?Gln
50??????????????????55??????????????????60Ala?Met?Tyr?Glu?Lys?Gly?Arg?Leu?Leu?Arg?Ala?Thr?Ala?Arg?Gly?Lys?65??????????????????70??????????????????75??????????????????80Leu?Ala?Ala?Glu?Asp?Ala?Asn?Leu?Ser?Ala?Gly?Gly?Val?Ala?Asn?Ala
85??????????????????90??????????????????95Phe?Ser?Ala?Ala?Phe?Gly?Ser?Pro?Ile?Ser?Glu?Lys?Asp?Ala?Pro?Ala
100?????????????????105?????????????????110Leu?His?Lys?Leu?Leu?Thr?Asn?Met?Ile?Glu?Asp?Ala?Gly?Asp?Leu?Ala
115?????????????????120?????????????????125Thr?Arg?Gly?Ala?Lys?Glu?Lys?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe
130?????????????????135????????????????140Tyr?Gly?Val?Ser?Thr?Cys?Asn?Thr?Thr?Glu?Gln?Asp?Lys?Leu?Ser?Lys145?????????????????150?????????????????155?????????????????160Asn?Gly?Ser?Tyr?Pro?Ser?Gly?His?Thr?Ser?Ile?Gly?Trp?Ala?Thr?Ala
165?????????????????170?????????????????175Leu?Val?Leu?Ala?Glu?Ile?Asn?Pro?Gln?Arg?Gln?Asn?Glu?Ile?Leu?Lys
180?????????????????185?????????????????190Arg?Gly?Tyr?Glu?Leu?Gly?Glu?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp
195?????????????????200?????????????????205Gln?Ser?Asp?Val?Asp?Ala?Ala?Arg?Ile?Val?Gly?Ser?Ala?Val?Val?Ala
210?????????????????215?????????????????220Thr?Leu?His?Thr?Asn?Pro?Ala?Phe?Gln?Gln?Gln?Leu?Gln?Lys?Ala?Lys225?????????????????230?????????????????235?????????????????240Asp?Glu?Phe?Ala?Lys?Gln?Gln?Lys
245
The data of SEQ ID NO:27:
(i) sequential nature
(A) length: 735 base pairs
(B) type: nucleic acid
(C) chain: two strands
(D) topology: linearity
(ii) molecule type: genomic dna
(iii) suppose: not
(iv) antisense: not
(vi) originate:
(A) organism: Serratia ficartia
(B) bacterial strain: IAM 13540
(ix) feature:
(A) title/keyword: CDS
(B) position: 1...732
(xi) order is described: SEQ ID NO:27:ATG AAA AAA ATA TTA TTA GCC ACA TTA AGC TGC GCC GCG TTG ACG CAG 48Met Lys Lys Ile Leu Leu Ala Thr Leu Ser Cys Ala Ala Leu Thr Gln 15 10 15TTT TCC TTT GCC GCC AAA GAT GTC ACT ACC CAC CCT GAG GTT TAT TTT 96Phe Ser Phe Ala Ala Lys Asp Val Thr Thr His Pro Glu Val Tyr Phe
20??????????????????25??????????????????30CTG?CAA?GAA?TCA?CAG?TCC?ATC?GAC?AGC?CTG?GCA?CTA?TTG?CCG?CCG?CCG??????144Leu?Gln?Glu?Ser?Gln?Ser?Ile?Asp?Ser?Leu?Ala?Leu?Leu?Pro?Pro?Pro
35??????????????????40??????????????????45CCG?GCG?ATG?GAC?AGC?ATT?GAT?TTC?CTG?AAT?GAC?AAA?GCG?CAA?TAC?GAC??????192Pro?Ala?Met?Asp?Ser?Ile?Asp?Phe?Leu?Asn?Asp?Lys?Ala?Gln?Tyr?Asp
50??????????????????55??????????????????60GCC?GGG?AAA?ATA?GTG?CGC?AAT?ACT?CCG?CGT?GGC?AAG?CAG?GCT?TAT?GAT??????240Ala?Gly?Lys?Ile?Val?Arg?Asn?Thr?Pro?Arg?Gly?Lys?Gln?Ala?Tyr?Asp?65??????????????????70??????????????????75??????????????????80GAC?GCC?CAC?GTT?GCC?GGG?GAC?GGC?GTT?GCC?GCC?GCA?TTT?TCC?AAC?GCC??????288Asp?Ala?His?Val?Ala?Gly?Asp?Gly?Val?Ala?Ala?Ala?Phe?Ser?Asn?Ala
85??????????????????90??????????????????95TTC?GGC?CTA?GAA?ATA?GCC?CAA?CGG?AAA?ACG?CCG?GAG?CTG?TTT?AAG?CTG??????336Phe?Gly?Leu?Glu?Ile?Ala?Gln?Arg?Lys?Thr?Pro?Glu?Leu?Phe?Lys?Leu
100?????????????????105?????????????????110GTG?ATG?AAA?ATG?CGT?GAA?GAC?GCC?GGC?GAT?TTG?GCG?ACC?CGC?AGC?GCC??????384Val?Met?Lys?Met?Arg?Glu?Asp?Ala?Gly?Asp?Leu?Ala?Thr?Arg?Ser?Ala
115?????????????????120?????????????????125AAA?AAT?CAC?TAT?ATG?CGC?ATT?CGC?CCC?TTT?GCG?TTT?TAT?AAC?GAA?GCG??????432Lys?Asn?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe?Tyr?Asn?Glu?Ala
130?????????????????135?????????????????140ACC?TGC?CGA?CCG?GAC?GAA?GAA?AGC?ACC?CTG?TCG?AAG?AAC?GGT?TCT?TAC??????480Thr?Cys?Arg?Pro?Asp?Glu?Glu?Ser?Thr?Leu?Ser?Lys?Asn?Gly?Ser?Tyr145?????????????????150?????????????????155?????????????????160CCT?TCC?GGC?CAT?ACC?ACC?ATC?GGC?TGG?GCG?ACC?GCG?CTG?GTG?CTG?GCT??????528Pro?Ser?Gly?His?Thr?Thr?Ile?Gly?Trp?Ala?Thr?Ala?Leu?Val?Leu?Ala
165?????????????????170?????????????????175GAA?ATC?AAC?CCC?GCC?AGG?CAG?GGT?GAA?ATC?CTG?CAG?CGC?GGC?TAT?GAT??????576Glu?Ile?Asn?Pro?Ala?Arg?Gln?Gly?Glu?Ile?Leu?Gln?Arg?Gly?Tyr?Asp
180?????????????????185?????????????????190ATG?GGC?CAA?AGC?CGG?GTT?ATC?TGC?GGT?TAT?CAC?TGG?CAA?AGC?GAC?GTG??????624Met?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp?Gln?Ser?Asp?Val
195?????????????????200?????????????????205ACT?GCG?GCG?CGC?ATG?GCG?GCG?TCG?GCC?ATG?GTG?GCG?CGT?TTG?CAT?GCC??????672Thr?Ala?Ala?Arg?Met?Ala?Ala?Ser?Ala?Met?Val?Ala?Arg?Leu?His?Ala
210?????????????????215?????????????????220GAA?CCC?ACC?TTC?GCC?GCC?CAG?CTG?CAA?AAG?GCC?AAA?GAC?GAA?TTC?AAC??????720Glu?Pro?Thr?Phe?Ala?Ala?Gln?Leu?Gln?Lys?Ala?Lys?Asp?Glu?Phe?Asn225?????????????????230?????????????????235?????????????????240GGC?CTG?AAA?AAG?TAA??????????????????????????????????????????????????735Gly?Leu?Lys?Lys
The data of SEQ ID NO:28:
(i) sequential nature
(A) length: 244 amino acid
(B) type: amino acid
(D) topology: linearity
(ii) molecule type: protein
(vi) originate:
(A) organism: Serratia ficartia
(B) bacterial strain: IAM 13540
(xi) order is described: SEQ ID NO:28:Met Lys Lys Ile Leu Leu Ala Thr Leu Ser Cys Ala Ala Leu Thr Gln 15 10 15Phe Ser Phe Ala Ala Lys Asp Val Thr Thr His Pro Glu Val Tyr Phe
20??????????????????25??????????????????30Leu?Gln?Glu?Ser?Gln?Ser?Ile?Asp?Ser?Leu?Ala?Leu?Leu?Pro?Pro?Pro
35?????????????????40???????????????????45Pro?Ala?Met?Asp?Ser?Ile?Asp?Phe?Leu?Asn?Asp?Lys?Ala?Gln?Tyr?Asp
50??????????????????55??????????????????60Ala?Gly?Lys?Ile?Val?Arg?Asn?Thr?Pro?Arg?Gly?Lys?Gln?Ala?Tyr?Asp?65??????????????????70??????????????????75??????????????????80Asp?Ala?His?Val?Ala?Gly?Asp?Gly?Val?Ala?Ala?Ala?Phe?Ser?Asn?Ala
85??????????????????90??????????????????95Phe?Gly?Leu?Glu?Ile?Ala?Gln?Arg?Lys?Thr?Pro?Glu?Leu?Phe?Lys?Leu
100?????????????????105?????????????????110Val?Met?Lys?Met?Arg?Glu?Asp?Ala?Gly?Asp?Leu?Ala?Thr?Arg?Ser?Ala
115?????????????????120?????????????????125Lys?Asn?His?Tyr?Met?Arg?Ile?Arg?Pro?Phe?Ala?Phe?Tyr?Asn?Glu?Ala
130?????????????????135?????????????????140Thr?Cys?Arg?Pro?Asp?Glu?Glu?Ser?Thr?Leu?Ser?Lys?Asn?Gly?Ser?Tyr145?????????????????150?????????????????155?????????????????160Pro?Ser?Gly?His?Thr?Thr?Ile?Gly?Trp?Ala?Thr?Ala?Leu?Val?Leu?Ala
165?????????????????170?????????????????175Glu?Ile?Asn?Pro?Ala?Arg?Gln?Gly?Glu?Ile?Leu?Gln?Arg?Gly?Tyr?Asp
180?????????????????185?????????????????190Met?Gly?Gln?Ser?Arg?Val?Ile?Cys?Gly?Tyr?His?Trp?Gln?Ser?Asp?Val
195?????????????????200?????????????????205Thr?Ala?Ala?Arg?Met?Ala?Ala?Ser?Ala?Met?Val?Ala?Arg?Leu?His?Ala
210?????????????????215?????????????????220Glu?Pro?Thr?Phe?Ala?Ala?Gln?Leu?Gln?Lys?Ala?Lys?Asp?Glu?Phe?Asn225?????????????????230?????????????????235?????????????????240Gly?Leu?Lys?Lys
The data of SEQ ID NO:29:
(i) sequential nature
(A) length: 21 base pairs
(B) type: nucleic acid
(C) chain: strand
(D) topology: linearity
(ii) molecule type: other DNA... synthetic DNA
(iii) suppose: not
(iv) antisense: not
(xi) order is described: SEQ ID NO:29:CCCGGCGTCA CCAATCATAT T 21
The data of SEQ ID NO:30:
(i) sequential nature
(A) length: 21 base pairs
(B) type: nucleic acid (C) chain: strand (D) topology: linearity is molecule type (ii): other DNA... synthetic DNA is (iii) supposed: (iv) antisense not: (xi) order is not described: SEQ ID NO:30:GCCGGTAGAG GCATGCCCGG A 21

Claims (13)

1. produce the method for nucleosides-5 '-phosphoric acid ester, comprise allowing that nucleosides is had acid phosphatase than high-affinity and/or comparatively high temps stability, under pH 3.0-5.5 condition, act on nucleosides and phosphate group donor, produce and also collect nucleosides-5 '-phosphoric acid ester.
2. produce the method for nucleosides-5 '-phosphoric acid ester, comprise allowing microorganism under pH 3.0-5.5 condition, act on nucleosides and phosphate group donor, produce and collect nucleosides-5 '-phosphoric acid ester; Wherein microorganism transforms with comprising the recombinant DNA that nucleosides is had than the acid phosphatase enzyme coding gene of high-affinity and/or comparatively high temps stability.
3. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 1 or 2, wherein the Km value to nucleosides is lower than 100mM.
4. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 1 or 2, wherein acid phosphatase is stable under 50 ℃.
5. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 1 or 2, wherein the acid phosphatase that nucleosides is had than high-affinity derives from the bacterium that belongs to Escherichia, morganella morganii genus, Providencia, enterobacter, klebsiella or serratia.
6. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 5, wherein some amino-acid sequences of description order are basic identical among acid phosphatase amino-acid sequence that comprises and the SEQ ID NO:4,8,25,27,29 and 31 that is selected from sequence list, have a sudden change on some amino-acid sequences of described acid phosphatase description order in being selected from the SEQ ID NO:4,8,25,27,29 and 31 of sequence list, this sudden change has improved the affinity of nucleosides and/or temperature stability.
7. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 5, wherein said sudden change is selected from the 63rd leucine residue among the SEQ ID NO:8 of sequence list, the 65th alanine residue, the 66th glutaminic acid residue, the 69th asparagicacid residue, the 71st serine residue, the 72nd serine residue, the 74th glycine residue, the 85th serine residue, the 92nd alanine residue, the 94th alanine residue, the 104th glutaminic acid residue, the 116th asparagicacid residue, the 130th serine residue, the 135th threonine residues, the 136th glutaminic acid residue, the 151st threonine residues and/or the 153rd Isoleucine residue are amino acid whose alternative with another.
8. according to the method for production nucleosides-the 5 '-phosphoric acid ester of claim 1 or 2, wherein the phosphate group donor is selected from Tripyrophosphoric acid or its salt, benzenephosphonic acid or its salt, acetylphosphate or its salt and carbamyl phosphate or its salt.
9. mutant acid phosphatase, the amino-acid sequence that it comprises is basic identical with the some amino-acid sequences that are selected from description order among the SEQ ID NO:4,8,25,27,29 and 31 of sequence list, have a sudden change on some amino-acid sequences of described acid phosphatase description order in being selected from the SEQ ID NO:4,8,25,27,29 and 31 of sequence list, this sudden change improves affinity and/or the temperature stability to nucleosides.
10. according to a kind of mutant acid phosphatase of claim 9, wherein said sudden change is selected from the 63rd leucine residue among the SEQ ID NO:8 of sequence list, the 65th alanine residue, the 66th glutaminic acid residue, the 69th asparagicacid residue, the 71st serine residue, the 72nd serine residue, the 74th glycine residue, the 85th serine residue, the 92nd alanine residue, the 94th alanine residue, the 104th glutaminic acid residue, the 116th asparagicacid residue, the 130th serine residue, the 135th threonine residues, the 136th glutaminic acid residue, the 151st threonine residues and/or the 153rd Isoleucine residue are amino acid whose alternative with another.
11. press the encoding gene of the acid phosphatase of claim 9 definition.
12. comprise recombinant DNA by the gene of claim 11 definition.
13. comprise microorganism by the recombinant DNA of claim 12 definition.
CN97122934A 1996-11-21 1997-11-21 Method for producing nucleoside-5' -phosphate ester Expired - Lifetime CN1117870C (en)

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EP0857788A2 (en) 1998-08-12
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US6015697A (en) 2000-01-18
JP4304727B2 (en) 2009-07-29
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US20020004590A1 (en) 2002-01-10

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