CN117487821B - Malil 6 gene for Brazilian banana ethylene signal transduction and application thereof - Google Patents
Malil 6 gene for Brazilian banana ethylene signal transduction and application thereof Download PDFInfo
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- CN117487821B CN117487821B CN202311852013.7A CN202311852013A CN117487821B CN 117487821 B CN117487821 B CN 117487821B CN 202311852013 A CN202311852013 A CN 202311852013A CN 117487821 B CN117487821 B CN 117487821B
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- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
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- C12N15/8202—Methods for introducing genetic material into plant cells, e.g. DNA, RNA, stable or transient incorporation, tissue culture methods adapted for transformation by biological means, e.g. cell mediated or natural vector
- C12N15/8205—Agrobacterium mediated transformation
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
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Abstract
The invention discloses a Brazilian banana ethylene signal transduction methodMaEIL6Gene and use thereof, said gene comprisingMaEIL6The nucleotide sequence of the gene is SEQ ID NO: 1. And above-mentionedMaEIL6Genetically modulated interactionMaMADS36The nucleotide sequence of the promoter is SEQ ID NO: 3. The invention clearly shows the ethylene signal transduction factorMaEIL6The method plays a role in regulating and controlling the ripening quality of the banana fruits, expands a regulating and controlling network of the ripening quality of the banana fruits, provides a target gene for improving the ripening quality of the banana fruits by a biotechnology means, and provides a theoretical basis for the research and development of new ripening or fresh-keeping technologies.
Description
Technical Field
The invention relates to the technical field of banana biology, in particular to Brazilian banana ethylene signal transductionMaEIL6Genes and uses thereof.
Background
Brazil bananaMusa acuminate L.AAA group cv. canndish, BX) is a recognized high-yield, high-quality variety, and the fruit post-harvest ripening process is also the main process for quality formation. Brazil banana is a typical respiratory-type fruit, and ethylene signals play a very important role in the postharvest ripening process of the fruit. Therefore, the genetic improvement of bananas by the biotechnology means has important significance in regulating and controlling the shelf life of the fruits, reducing postharvest loss and guaranteeing sustainable healthy development of banana industry.
At present, no key gene involved in ethylene signal transduction is found in the Brazil banana genome, so that it is highly hoped to find a key gene involved in ethylene signal transduction to regulate and control the ripening of Brazil banana fruits, and the gene expression is regulated so as to regulate and control the postharvest ripening of bananas, so that the development of new ripening or fresh-keeping technology is promoted, and the genetic improvement of bananas is realized.
Disclosure of Invention
The invention aims to overcome the defects of the prior art and provides a Brazilian banana ethylene signal transduction methodMaEIL6Genes and uses thereof.
In order to achieve the above purpose, the technical scheme of the invention is as follows:
the invention provides a Brazilian banana ethylene signal transduction methodMaEIL6Genes of the order ofMaEIL6The nucleotide sequence of the gene is SEQ ID NO: 1.
The invention also provides a deviceMaEIL6The amino acid sequence of the protein MaEIL6 coded by the gene is shown as SEQ ID NO: 2.
The invention also provides a method for obtaining the aboveMaEIL6A primer pair for a gene, said primer pair:
Primer-F：5’-AGTGGTCTCTGTCCAGTCCTCGTCGTATGTGGAGA-3’；
Primer-R：5’-GGTCTCAGCAGACCACAAGTGCATCTTCATGTAGA-3’。
the invention also provides a method for preparing the composite materialMaEIL6Genetically modulated interactionMaMADS36A promoter, saidMaMADS36The nucleotide sequence of the promoter is SEQ ID NO: 3.
The invention also provides a recombinant expression vector which is an expression vector containing the MaEIL6 gene, wherein the expression vector is pCAMBIA-1300 or pTRV2 or Prey.
The invention also provides a host cell containing the recombinant expression vector, and the host cell is agrobacterium GV3101.
The invention also provides a device for controlling the flow rate of the liquidMaEIL6Gene regulation of the aboveMaMADS36The application of the promoter in regulating the mature quality of fruits.
Preferably, the method comprisesMaMADS36A recombinant vector of a promoter, wherein the vector is pAbAi.
Use of one of the following for regulating the ripening quality of banana fruits, comprising:
(1) Above mentionedMaEIL6A gene;
(2) The recombinant expression vector described above;
(3) The host cell described above.
The application of one of the following in cultivating a new variety of fast-maturing high-quality bananas comprises:
(1) Above mentionedMaEIL6A gene;
(2) The recombinant expression vector described above;
(3) The host cell described above.
Preferably, the banana is Brazil banana.
The invention has the beneficial effects that:
the invention makes clear the effect of the ethylene signal transduction factor MaEIL6 in regulating and controlling the ripening quality of banana (especially Brazilian banana), expands the regulating and controlling network of the ripening quality of banana fruits, provides a target gene for improving the ripening quality of banana fruits by biotechnology means, and provides theoretical basis for the research and development of new ripening or fresh-keeping technology.
Drawings
FIG. 1 is a graph showing differential expression analysis of postharvest ripening characteristics of banana fruits and MaEIL6 during ripening of the fruits under different treatments; in the figure, A is a ripening characteristic diagram of banana fruits under different treatment conditions after picking; a. b and c are fruits of maturity I (0 DPH), II (2 DPH) and VI (6 DPH) under ethylene treatment conditions, respectively, and D, e and f are fruits of 0D,2D and 6D, respectively, after harvest under natural ripening conditions; g, h and i are fruits harvested at 0D,2D and 6D under 1-MCP treatment conditions, respectively; b is a graph for measuring the release amount of ethylene under different treatment conditions; c is a measurement chart of fruit hardness under different treatment conditions; d is a differential expression analysis chart of MaEIL6 in the fruit ripening process under different treatments.
Fig. 2 is bananaMaEIL6A gene structure (a), a conserved domain analysis (B), a protein domain (C) and a subcellular localization prediction (D) map;
FIG. 3 is a view of MaEIL6 subcellular localization;
FIG. 4 is a map of the transcriptional activity of MaEIL 6;
FIG. 5 is a functional verification of MaEIL6 on banana fruit flake; in the figure, A is a transient silencing expression profile of MaEIL6, A1, A2 and A3 are three replicates of CK, and A4, A5 and A6 are three replicates of transient silencing; b is a transient overexpression map of MaEIL6, B1, B2 and B3 are three repetitions of CK, and B4, B5 and B6 are three repetitions of transient overexpression; c is a graph of total starch content in fruit slices at transient silencing expression of MaEIL 6; d is a graph of total starch content in fruit slices at transient overexpression of MaEIL 6; e is a map of β -amylase activity in fruit slices at transient silencing expression of MaEIL 6; f is a graph of beta-amylase activity in fruit slices at transient overexpression of MaEIL 6; g is a graph of soluble sugar content in fruit slices at transient silencing expression of MaEIL 6; h is a graph of the content of soluble sugar in the fruit slices during transient overexpression of MaEIL 6; i is an expression level diagram of an endogenous gene in a fruit slice during transient silencing expression of MaEIL 6; j is an expression level diagram of an endogenous gene in the fruit slice during transient over-expression of MaEIL 6.
FIG. 6 is a graph showing the activity detection of a promoter; in the figure, A is a vector schematic diagram of pNC-121, B is a GUS staining chart of banana fruit slices, and B1: pNC121 (positive control); b2: pNC121 (negative control) excised 35S promoter; b3: replacing the 35S promoter in the pNC121 vector with the MaMADS36 promoter to obtain a post-dyeing result; c is GUS activity detection chart, and samples represented by B1, B2 and B3 are the same as those in B.
FIG. 7 is a schematic representation of the transcriptional regulation of MaMADS36 by MaEIL 6; in the figure, A is a schematic diagram of a yeast single hybrid vector; b is a carrier construction schematic diagram of a bifluorescein report system; c is a yeast single hybridization verification chart; d is an EMSA verification graph; e is a dual fluorescein reporter system detection map; f is a living body imaging detection chart.
Detailed Description
The present invention is described in further detail below in conjunction with specific embodiments for understanding by those skilled in the art.
Related materials required in the following examples:
1. material
Using Brazil banana as raw materialMusa acuminataL.AAA group, cv. candinish) is a material from the clear banana base of Tropical biotechnology institute of Tropical agricultural sciences, china. Radix et rhizoma NicotianaeNicotiana benthamiana）Is provided by the subject group of genetic improvement of banana quality in the national academy of tropical agriculture and tropical biotechnology institute.
2. Strain and vector
Competence used in this experiment: DH5 alpha, Y1HGold, GV3101 (pSoup), EHA105, etc., the yeast single hybrid Bait vector in the experiment was selected from pAbAi, and the yeast single hybrid Prey vector was pGADT7. The vectors used in the plant double luciferase report experiments are pGreenII 0800-LUC and pGreenII 62-SK, which are all from the laboratory. The pNC121 vector is presented by a teacher of the national institute of tropical biotechnology of the national academy of tropical agriculture. The plant green fluorescent binary expression vector pCAMBIA1300-GFP is presented by a teacher of the national academy of sciences of Tropical agriculture institute Ruan Meng.
3. Reagent(s)
The main reagents required for this study (Table 1)
TABLE 1 Experimental reagents
Example 1 Brazilian banana ethylene Signal transductionMaEIL6Gene cloning
1.MaEIL6Gene cloning
According to the result of analyzing the transcriptome data of Brazilian banana in the early stage of a laboratory, the gene with higher expression level is selected for cloning. Primers were designed with Prime 5.0 and specific linker sequences were cloned seamlessly in front of the two primers as follows:
Primer-F：5’-AGTGGTCTCTGTCCAGTCCTCGTCGTATGTGGAGA-3’；
Primer-R：5’-GGTCTCAGCAGACCACAAGTGCATCTTCATGTAGA-3’。
amplification was performed using Brazil banana fruit cDNA as template, and the amplification system is shown in Table 2.
TABLE 2 PCR amplification System
MaEIL6Conditions for gene amplification:94℃for 5min, 94℃for 60 s,56℃for 45 s,72℃for 60 s, and after 35 cycles of amplification, 72℃for 10 min; after the reaction, 3 mu LPCR product was taken and subjected to agarose gel electrophoresis to determine whether the band size was correct. After the PCR products were recovered by using a gel purification recovery kit (Omega), the recovered target fragments were ligated with the transformed seamless cloning pGBKT7 and pGADT7 vectors, and the ligation system was shown in Table 3.
TABLE 3 pGBKT7/pGADT7 vector ligation System
Gently sucking, beating, mixing and centrifuging, and then carrying out metal water bath 1h at 37 ℃.
2. Transformation
The ligation product was transformed into E.coli DH 5. Alpha. Bacteria as follows:
(1) taking out from-80deg.C, rapidly inserting Escherichia coli competent DH5 alpha into ice for about 5min until bacteria melt, adding the connection product, gently sucking with gun head, mixing, inserting into ice-water mixture, and standing for 30min.
(2) After heat shock 90 s in a metal bath at 42 ℃, an ice bath is performed for 5min (note that the centrifuge tube cannot be shaken during the picking process, otherwise the conversion rate is reduced).
(3) The centrifuge tube was carefully placed in an ultra clean bench, 500 μl of antibiotic-free sterile LB medium was added thereto, and after mixing, 1h was cultured at 37 ℃,200 rpm.
(4) Centrifuging at 5000rpm in a centrifuge for 30 s, discarding part of supernatant, mixing the rest supernatant with thallus, sucking 100 μL, and uniformly smearing on an Ampicillin (abbreviated as Amp) resistant LB plate. The incubator was inverted overnight at 37 ℃.
(5) After the monoclonal is grown, single colony is selected to be dissolved in 700 mu L of LB liquid medium with ampicillin resistance, sucked and evenly mixed, and placed on a shaking table at 37 ℃ for culturing at 200 rpm for 3-6 h. 2 mu L of the sample was taken as a PCR amplification template, and the reaction system was as shown in Table 4.
TABLE 4 colony PCR reaction System
The reaction procedure was as follows:
and (3) performing electrophoresis detection on an LPCR product of 3 mu after amplification, and if the size of the detection result is consistent with the size of a target band, indicating that the single colony is positive clone.
Sucking 200 mu L of the bacterial liquid positive in the detection, sequencing by a biological company, and sequencing to obtain Brazil banana ethylene signal transductionMaEIL6The nucleotide sequence of the gene is SEQ ID NO:1, the amino acid sequence of which is shown as SEQ ID NO: 2.
The remaining bacterial liquid with correct sequencing is added with 40% glycerol with the same amount and stored at-80 ℃. Sequencing the correct bacterial solution, shaking again, activating, amplifying and culturing to extract plasmids, and using a plasmid DNA extraction kit (Omega). The method steps are according to the instruction of the kit.
Example 2 Brazilian banana ethylene Signal transductionMaEIL6qRT-PCR of genes
Design with Primer 5 softwareMaEIL6Gene specific expression primers:
MaEIL6P1： 5’-GATGACTGCGAAAGAGAGCA-3’；
MaEIL6P2： 5’- ACTACCAGACGATGGTGGAA-3’；
the banana actin gene is used as reference. The cDNA of Brazil banana fruit is used as template, added according to table 5, mixed evenly, and then immediately separated, and amplified in a real-time fluorescent quantitative PCR instrument.
TABLE 5 qRT-PCR reaction System
The reaction procedure is:
as shown in fig. 1: under the exogenous ethylene treatment, the expression level of MaEIL6 rapidly rises to 10.34 by 2 days after harvest, 8.91 times at harvest, and 14.21 by 6 days after harvest, 12.25 times at harvest. On days 2 and 6 after harvest of naturally mature fruits, the expression level of MaEIL6 was 0.94 and 1.57, respectively, which were 1.25 and 2.09 times that at harvest, respectively, with a gradual rising trend. The expression levels of the 1-MCP treated fruits on the 2 nd day and the 6 th day after harvest were 0.24 and 0.21, respectively, which were slightly lower than the expression level of 0.25 immediately after harvest, as follows: the expression of the MaEIL6 gene in the postharvest ripening process of fruits is obviously induced by exogenous ethylene and inhibited by 1-MCP.
Example 3MaEIL6Bioinformatics analysis of genes
Analyzing physicochemical properties such as amino acid sequence composition, molecular weight, isoelectric point and the like of the MaEIL6 coding protein by utilizing Protpam (http:// expasy. Org /); analysis of the gene structure with GSDS 2.0; the conserved domains were analyzed using NCBI database (http:// www.ncbi.nlm.nih.gov/BLAST/BLAST. Cgi); MEME Suite (http:// me. Nbcr. Net/me/cgi-bin/me. Cgi) software pairsMaEIL6Analyzing the structure of the encoded protein; PSORT (http:// www.psort.org) software pairMaEIL6Subcellular localization analysis was performed.
(1) Analysis of physicochemical Properties of MaEIL6 protein
By utilizing the physicochemical properties of Protparam (MaEIL 6 protein), the obtained MaEIL6 codes 634 amino acids, the numbers of negatively charged amino acid residues (Asp+Glu) are 81 and 84, the numbers of positively charged amino acid residues (Arg+Lys) are 70 and 72, and the protein molecular formula is C 3104 H 4837 N 883 O 970 S 34 And C 3102 H 4829 N 877 O 981 S 39 Molecular weights 71.13 kD and 71.35 kD, isoelectric points 5.70 and 5.68, and all belong to hydrophilic amino acids.
（2）MaEIL6Structural analysis of (a)
MaEIL6The (Ma08_t 22320.1) gene and CDS have full lengths of 2239bp and 1905 bp, respectively, and no introns, and have730bp downstream non-coding sequence (FIG. 2A). Analysis of its conserved domains at NCBI: maEIL6 208-957 bp is a typical Ethylene insensitive3 (EIN 3) domain and 187-1254 bp is a typical methyl-INSENSITIVE 3-like 3 protein. Therefore, it is presumed thatMaEIL6Is a member of the EIN gene family (fig. 2B).
(3) MaEIL6 protein domain analysis and subcellular localization prediction
Analysis of the MaEIL6 protein structure using the MEME Suite software was found to contain three conserved domains: FCCGNMH, RNDRNGPQAJCKYQ and WWPQGV (fig. 2C). These conserved motifs constitute methyl-INSENSITIVE 3-like 3 protein, which is a domain of proteins essential for their function.
Subcellular localization analysis of MaEIL6 using PSORT software found that it was 69.6% likely to be localized in the nucleus, characteristic of transcription factors (fig. 2D).
Example 4MaEIL6 subcellular localization
1. Plant expression vector pCAMBIA1300-MaEIL6-GFPConstruction of (3)
According toMaEIL6Gene cDNA sequence full length 1905 bp, designed to contain enzyme cutting site asXbal andSall primer, the reverse primer needs to remove the stop codon. The amplification primers were designed as follows:
MaEIL6P3：5’-TCTAGAATGGGTGGGCTACTAAT-3’，
MaEIL6P4：5’-GTCGACGTAGAACCAGTTCAATGA-3’；
the PCR procedure was as follows:
and taking a3 mu LPCR product after amplification, and detecting whether the size of the target fragment band is correct by agarose gel electrophoresis. After the PCR product was correctly recovered by using a gel purification recovery kit (Omega), and the recovered target fragment was reacted with pMD TM 19-T (Takara) was ligated at 16℃overnight at 12 h with the ligation system shown in Table 6. After ligation, large intestine competent DH 5. Alpha. Was transformed.
Table 6 connection system
Picking up single clone on the plate, carrying out positive identification by bacterial liquid PCR, detecting correct sequencing by a biological engineering, and extracting plasmid by correct shaking and activating and amplifying culture together with pCAMBIA1300-GFPThe plasmids were verified together by double cleavage, the verification system is as in Table 7:
TABLE 7 double cleavage reaction System
After connection, E.coli is transformed, monoclonal is selected for bacterial liquid PCR detection, and plasmid is extracted correctly, and the plasmid is pCAMBIA1300-MaEIL6-GFPThe recombinant plasmid is used for agrobacterium EHA105 transformation.
2. Transformed Agrobacterium EHA105
(1)pCAMBIA1300-MaEIL6-GFPRecombinant plasmid transformed agrobacterium EHA105
(1) Agrobacterium competent cells EHA105 stored at-80℃were thawed on ice for about 5min.
(2) To the freshly thawed competent cell suspensions, 0.2. Mu.g of pCAMBIA1300-MaEIL6-GFPThe recombinant plasmid was gently mixed and allowed to stand in an ice-water bath for 5min.
(3) Then sealing, placing in liquid nitrogen, freezing for 5min, standing in water bath at 37deg.C for 5min, and ice-bathing for 5min.
(4) mu.L of precooled YEP liquid medium without antibiotics was added and cultured at 28-30℃with shaking at 200 rpm for 2-3 h.
(5) The thalli are collected at 5000rpm of a centrifugal machine for 1 min, redundant supernatant is discarded, 100 mu L of suction and beating are reserved and evenly mixed, bacterial liquid is evenly coated on a YEP plate containing 25 mu g/mL Rif and 50 mu g/mL Kan, and the bacterial liquid is cultured in a shaking table at 28 ℃ in an inverted mode for 48-96 h.
6 single clones were picked with a gun head and placed into 700. Mu.L of YEP liquid medium (containing 25. Mu.g/mL)Rif and 50. Mu.g/mL Kan), and culturing the bacterial liquidMaEIL6The gene primer is subjected to PCR identification, and the correct bacterial liquid is subjected to activation culture preservation. Hollow pCAMBIA1300-GFPThe plasmid also transformed Agrobacterium EHA105 as a control.
(2) Transient expression and subcellular localization observation of tobacco
(1) Agrobacterium solution EHA105-pCAMBIA1300-MaEIL6-GFPEHA105-pCAMBIA1300-GFPRespectively activating in YEP liquid culture medium (containing 25 μg/mL Rif and 50 μg/mL Kan), culturing at 30deg.C and 220 rpm to OD 600 =0.6-0.8。
(2) The bacterial liquid is collected in a centrifuge at 5000rpm for 10min.
(3) Re-suspending thallus to regulate OD by mixing infection liquid 600 =1.0, standing at room temperature for 2 h.
(4) Selecting good-growth Nicotiana benthamiana, injecting from the back of the leaf blade by using a needleless injector, and injecting 3-4 leaves into each fungus sample.
(5) The injected Nicotiana benthamiana is cultured under low light, and water is sprayed to keep moist.
(6) 48 h the leaves after injection were observed under a confocal laser microscope and photographed.
As shown in fig. 3: the constructed pCAMBIA1300-MaEIL6-GFPRecombinant plasmid transformed agrobacterium EHA105, activated shake bacteria to make bacterial liquid OD 600 Up to 0.8 was injected into tobacco leaves, left overnight at 25℃under low light, and after 1-3 d, the distribution of green fluorescent protein was observed under a laser confocal microscope. Determination by observing green fluorescent protein GFP distributionMaEIL6A location that functions in a cell. Laser confocal image display (FIG. 3), control empty pCAMBIA1300-GFPThe green fluorescent protein GFP in the tobacco cells of the plasmid is distributed in the whole cells; transformation of pCAMBIA1300-MaEIL6-GFPThe recombinant plasmid distributes green fluorescent protein GFP in the cell nucleus in tobacco cells. The experimental results showed that the MaEIL6 protein was localized in the nucleus, consistent with the transcription factor properties (fig. 3).
EXAMPLE 5 MaEIL6 transcriptional activation assay
1.pGBKT7-MaEIL6Construction of recombinant plasmids
To sequence the correct pMD19-T-MaEIL4/pMD19-T-MaEIL6Amplifying recombinant plasmid as template, designing primer amplification conserved domain 750 bp according to cDNA sequence of geneMaEIL4And 760 bpMaEIL6Sequences designed to contain cleavage sitesEcoRI andSaIthe primers of I are as follows:
pGBKT7-MaEIL6 P1：5’-CGGAATTCCCGTCGTATGTGGA-3’；
pGBKT7-MaEIL6 P2：5’-GCGTCGACGGTGCATCTTCATGTAGAA’。
the PCR reaction system was as in Table 8. After the PCR reaction was completed, 3. Mu.LPCR was taken and subjected to agarose gel electrophoresis to determine whether the band size was correct. After the completion of the reaction, the PCR product was recovered by using a gel purification recovery kit (Omega). Recovery of the product with pMD TM 19-T (Takara) ligation, ligation system was as above. The ligation product was transformed into E.coli DH 5. Alpha. By reaction overnight at 16℃in a metal bath of 16℃ 16 h.
And (3) performing bacterial liquid PCR detection after picking monoclonal, activating bacterial liquid with positive detection, performing sequencing by a worker, extracting plasmids with correct sequencing, and performing double enzyme digestion detection on the vector pGBKT7 together with the plasmids. The double cleavage detection system is shown in Table 8:
table 8 double cleavage reaction System
After the reaction at 37℃in the metal bath of 3 h, the digested product was purified and recovered, ligation was performed with T4 ligase at 16℃overnight for 16 h, and then the ligation product was transformed into E.coli DH 5. Alpha. After single clone is selected, bacterial liquid PCR detection is carried out, double enzyme digestion verification is carried out again on the correctly detected extracted plasmid, and the verification is correct, thus indicating pGBKT7-MaEIL6And (5) constructing a recombinant plasmid.
2. Transfection expression
pGBKT 7-room transformed into Yeast competent Y2HGoldMaEIL6Spot-plating on SD/-Trp medium and SD/-Trp plate with X-alpha-gal (20 mg/mL), culturing at 30deg.C in the dark for about 48 h, wherein pGBKT7-p53+pGADT7-largeT (positive control),pGBKT7 (negative control). If it isMaEIL6The yeast can be enabled to secrete X-alpha-gal (alpha-galactosidase to decompose a substrate), and blue bacterial plaque grows to indicate that the yeast has transcriptional activation activity and can activate the expression of a downstream reporter gene.
The experimental results show that: pGBKT7-MaEIL6Blue plaques developed, which were consistent with the positive control pGBKT7-p53+pGADT7-largeT results, while colonies of the negative control pGBKT7 did not change blue (FIG. 4). The MaEIL6 has transcriptional activation activity, and the results of subcellular localization experiments are combined, so that the MaEIL6 is a transcription factor.
EXAMPLE 6 functional verification of MaEIL6 in banana fruit flakes
1. Construction of viral-mediated Gene silencing (virus induced gene silencing, VIGS) vector and Agrobacterium transformation
According toMaEIL6The full-length cDNA sequence is designed, a specific primer is designed, xbaI and KpnI are respectively added to two ends of the primer, and amplified products are connected to the TRV2 vector and the plant over-expression vector pCAMBIA 1300. And after the construction of all the viral vectors and the plant over-expression vectors is finished, detecting the correctness of the vectors, extracting plasmids, and carrying out agrobacterium competent cell transformation, wherein the steps are the same. The specific primer sequences are shown below:
MaEIL6F：5’-TCTAGAATGGCTTTCTGGATA-3’；
MaEIL6R：5’-GGTACCCTATGCCGCCCATATT-3’。
2. agrobacterium infection
The pTRV2-MaEIL6 and pCAMBIA1300-MaEIL6 agrobacterium gV3101 containing target vectors are coated on a YEP plate (50 mug/ml Kna and 40 mug/ml Rif are added simultaneously in the plate) of corresponding antibiotics, and the plates are placed in a 28 ℃ incubator for 2-3 days in an inverted mode. Picking monoclone to culture on a YEP liquid culture medium on a shaking table at a constant temperature of 28 ℃ under shaking of 200 r/min, and stopping culturing when OD600 is about 0.6 to 0.8; transferring 45 ml bacteria solution into 50 ml centrifuge tube in ultra clean workbench, centrifuging at room temperature of 5000 r/min for 5min, discarding supernatant, and infecting buffer (10 mmol/L mgCl) with pH of 5.6-5.7 2 10mmol/L MES and 200 mu mol/L acetosyringone) bacterial liquid, the supernatant is removed by resuspension and centrifugation, and the solution is placed in the dark at room temperature for 2 h.
Taking out the fruit of Brazil banana, slicing, sterilizing the surface and knife of banana, cutting off the non-uniform parts of the top and bottom of banana with sharp fruit knife, cutting into thin slices with uniform size and thickness of about 0.4 cm, and soaking in sodium bisulphite 0.1% for 10min.
pTRV1 and pTRV2 were mixed and pCAMBIA1300 was used as an empty control and the fruit flakes of brazil banana were infected by vacuum infiltration, preferably with the resuspension over the fruit. Virus-induced gene silencing is the result of the combined action of pTRV1 and pTRV2 with the target gene, and laboratory earlier exploration of suitable conditions is that pTRV1 is mixed with the agrobacterium tumefaciens liquid serving as a viral vector in a ratio of 1:3, and OD is re-suspended 600 Vacuum infiltration was performed at 0.8 and the infected fruit slices were placed on MS solid medium at 23℃for 3 days.
3. Silencing and overexpressing treated banana fruit slice I 2 Dyeing of KI
Dissolving 4.4. 4.4 g potassium iodide in30 ml distilled water under a dark environment, grinding and mixing uniformly, adding 1.1 g crystal iodine after full dissolution, adding distilled water to a volume of 500 ml, and transferring into a brown wide-mouth bottle for dark storage. The prepared I-KI solution is diluted to 0.5% for later use. Putting banana slices into a glass culture dish, pouring the I-KI solution with the concentration, dyeing for 2 min30 s after numbering, taking out at the same time after dyeing, immediately photographing, and repeating the experiment for 3 times.
4. Determination of total starch content
The determination of the starch content of banana fruit was done by a kit from Suzhou Ming Biotechnology Co. The infected banana slices are put into a 37 ℃ oven to be completely dried and then ground into powder, 0.01g of sample is weighed, 1mL of reagent I is added, the mixture is fully homogenized and then transferred into an EP tube to be uniformly mixed by vortex, and water bath is carried out for 20min at 80 ℃. Centrifuge at 4000rpm for 5min and discard supernatant. 500 mu L of distilled water is added to the precipitate, and the precipitate is gelatinized for 15min in a water bath at 95 ℃. Cooling and adding 350 reagent second [ mu ] L after gelatinization, and carrying out water bath at 95 ℃ for 10min. After completion, 850 mu L of distilled water is added, the mixture is centrifuged at 4000rpm for 10min, 200 mu L of supernatant is taken, 1mL of reagent is added, and the mixture is subjected to three-mixing, and then water bath is carried out at 95 ℃ for 10min. Naturally cooling to room temperature, and adjusting the wavelength of the spectrophotometer to 620nm to measure the absorbance.
5. Determination of sucrose content
The determination of the fructose content of banana fruits is completed by a kit of Suzhou Ming Biotechnology Co. The infected banana slices are put into a 37 ℃ oven to be completely dried and then ground into powder, 0.1g of sample is weighed, 1mL of extracting solution is added, the mixture is placed into a 80 ℃ water bath pot to be subjected to water bath for 10min and vibration for 3-5 times, after cooling, the mixture is centrifuged at room temperature of 5000rpm for 10min, a small amount of activated carbon is added into supernatant fluid to be subjected to water bath at 80 ℃ for 30min for decolorization, 1mL of extracting solution is added, the mixture is centrifuged at room temperature of 5000rpm for 10min, the supernatant fluid is taken, 700 mu L of reagent II and 200 mu L of reagent III are added, and the mixture is subjected to water bath at 95 ℃ for 30min. The absorbance was measured by adjusting the spectrophotometer wavelength to 480 nm.
6. Determination of glucose content
The determination of the glucose content of banana fruits is completed by a kit of Suzhou Ming Biotechnology Co. The infected banana slices are put into a 37 ℃ oven to be completely dried and then ground into powder, 0.1g of sample is weighed, 1mL of distilled water is added to be mixed into homogenate, the homogenate is placed into a 95 ℃ water bath kettle to be subjected to water bath for 10min, shake for 3-5 times, and after cooling, the supernatant is taken for standby after centrifugation at 12000 rpm. Mixing the reagent II and the reagent III uniformly in equal volume, adding 100 mu L of supernatant, standing for 15min at room temperature, and reading the absorbance value under the 505nm wavelength of a spectrophotometer.
7. Determination of fructose content
The determination of the fructose content of banana fruits is completed by a kit of Suzhou Ming Biotechnology Co. The infected banana slices are put into a 37 ℃ oven to be completely dried and then ground into powder, 0.1g of sample is weighed, 1mL of extracting solution is added, the mixture is placed into a 80 ℃ water bath pot to be subjected to water bath for 10min and vibration for 3-5 times, after cooling, the mixture is centrifuged at room temperature of 5000rpm for 10min, a small amount of activated carbon is added into supernatant fluid to be subjected to water bath at 80 ℃ for 30min for decolorization, 1mL of extracting solution is added, the mixture is centrifuged at room temperature of 5000rpm for 10min, the supernatant fluid is taken, 700 mu L of reagent II and 200 mu L of reagent III are added, and the mixture is subjected to water bath at 95 ℃ for 30min. The absorbance was measured by adjusting the spectrophotometer wavelength to 480 nm.
8. Determination of beta-amylase content
The determination of banana fruit beta-amylase activity was done by a kit from Suzhou Ming Biotechnology Co. The fresh sample of the infected banana slices is quickly frozen and ground into powder by liquid nitrogen, 0.1g of sample is weighed, 1mL of distilled water is added, the mixture is ground and homogenized, the homogenized mixture is poured into a centrifuge tube, and the mixture is placed at room temperature for 15min, and is vibrated once every 5min, so that the mixture is fully extracted. Centrifuging at 5000rpm at room temperature for 10min, collecting supernatant, adding distilled water to constant volume to 10mL to obtain amylase zymogen liquid. 1mL of the above-mentioned amylase zymogen liquid is sucked and 4mL of distilled water is added to obtain amylase diluent. Taking 250 mu L of amylase diluent by an alpha-amylase measuring tube, carrying out water bath for 15min at 70 ℃, adding 250 mu L of amylase diluent by a total amylase measuring tube, adding 250 mu L of reagent two into the alpha-amylase measuring tube and the total amylase measuring tube, carrying out water bath for 5min at 40 ℃, adding 500 mu L of reagent one, uniformly mixing in the water bath at 95 ℃, carrying out cooling, measuring absorbance value at 540nm of a spectrophotometer wavelength, calculating, respectively obtaining the activities of alpha-amylase and total amylase, and subtracting -amylase activity from the activity of the total amylase to obtain the activity of beta-amylase.
9. Quantitative expression analysis
The banana fruits after the silencing treatment are quickly frozen by liquid nitrogen and then are placed in an ultralow temperature refrigerator at the temperature of minus 80 ℃ for extracting total RNA. The extraction method was performed with reference to RNA extraction kit. The Primer Premier 5.Exe software was used to design gene specific expression primers, the specific Primer sequences were as follows:
Q MaEIL6P1： 5’-GATGACTGCGAAAGAGAGCA-3’，
Q MaEIL6P2：5’- ACTACCAGACGATGGTGGAA-3’；
Q MaMADS36 P1：5’-GGTCGCCCTAATCGTGTT-3’，
Q MaMADS36 P2：5’-TTGGCAGATTCTTGCTGATAG-3’；
and (3) taking the banana ACTIN gene as a reference, and carrying out real-time fluorescence quantitative analysis by taking the obtained cDNA as a template. The reaction system is as follows:
the PCR amplification conditions were as follows: step 95 ℃ pre-denaturation for 3 min, step: denaturation at 95 ℃ 45 s, steps: annealing 45 s at 56 ℃, and the steps are as follows: extension at 72℃for 30 s, amplification in steps 2-4 for 35 cycles, and dissolution profile was performed. Experiments were repeated 3 times.
As shown in fig. 5: construction of the inclusionMaEIL6Respectively transforming banana fruit slices 8 days after harvest, observing the iodine-potassium iodide staining condition of the fruit slices, and controlling the total starch content, beta-amylase activity, soluble sugar content and endogenous content in the fruit slicesMaEIL6As a result of examination of the expression level of (2), it was found that transient silencing in banana fruit flakes was observed as compared with the controlMaEIL6Post-iodine-potassium iodide staining was significantly deepened (fig. 5A), fruit total starch content 929.5 increased by 8.8% over control (fig. 5C); beta-amylase activity was 0.8, 18.3% lower than control (fig. 5E); sucrose, glucose, fructose content 9.5,3.7 and 3.2, respectively, reduced by 41.4%,28.8% and 23.8% respectively, compared to the control (fig. 5G); endogenous sourcesMaEIL6AndMaMADS36the expression level of (a) was significantly reduced by 37.4% and 26.3% respectively compared to the control (FIG. 5I). Conversely, transient overexpression in banana fruit slicesMaEIL6Post-iodine-potassium iodide staining was significantly lighter (fig. 5B), the total starch content of the fruit 674.3 was 21.6% lower than the control (fig. 4D); beta-amylase activity was 1.1, 18.9% higher than control (fig. 5F); sucrose, glucose, fructose content 20.3,7.1 and 5.8, respectively, increased by 23.0%,42.0% and 36.2% over control (fig. 5H); endogenous sourcesMaEIL6AndMaMADS36the expression level of (a) was significantly increased by 1.35 and 1.06-fold, respectively, compared to the control (FIG. 5J).
Example 6MaMADS36Sequence amplification and analysis of promoters
1.MaMADS36Sequence amplification of promoters
Isolation of banana genomic DNAMaMADS36A promoter sequence; the nucleotide sequence is shown as SEQ ID NO: 3.
2.MaMADS36Bioinformatics analysis of promoters
Bioinformatic analysis of the promoter elements was performed using the online website plantacare (http:// bioinformation. Psb. Ugent. Be/webtools/plant/html /). Bioinformatics analysis of plant CARE (http:// bioinformation. Psb. Ugent. Be/webtools/plantacare/html /) promoter elementsIndicating that predictionMaMADS36The promoter comprises a TGAA-motif core promoter element combined with EIN3, and also comprises 19 putative CAAT boxes "CAAT" and 9 TATA-box "TATAT" responsible for starting, promoting and enhancing transcription, etc. Promoter visualization analysis was performed using TBtools software (see fig. 6A).
Example 7MaMADS36Activity detection of promoters
The banana fruit slices are infested with agrobacterium-mediated methods. Substitution of the 35S promoter of pNC121 withMaMADS36The promoter, cut banana fruit into slices of approximately the same shape and thickness, and soaked in 1.5% sodium bisulphite solution for 10min for later use, see (Zhao Dongfang, 2020). Resuspending the Agrobacterium solution to OD 600 The preparation method comprises the steps of (1) using a liquid culture medium MS, adding 200 mu mol/L Acetosyringone (AS), standing at room temperature, incubating for 2-3 h, placing a proper amount of banana slices into incubated bacterial liquid, carrying out vacuum auxiliary infection, uniformly placing the banana slices on a 1/2MS solid culture medium, carrying out dark culture at 28 ℃ for 3 d, repeating each group for three times, and taking an empty carrier with a 35S promoter cut off AS a negative control group, wherein a normal pNC121 carrier is a positive control group. Selecting thin slices with similar sizes, placing the thin slices into a 50 mL centrifuge tube, and carrying out dyeing treatment by adopting a GUS dyeing kit, wherein the operation steps are according to the instruction book of the kit. And (3) decoloring the dyed fruit slices with 75% ethanol until the decoloring liquid is transparent, and observing and photographing the fruit slices under a stereoscopic microscope.
As shown in fig. 6: will beMaMADS36The promoter replaces the 35S promoter of pNC121 vector (fig. 6B), and agrobacterium-mediated transformation was used to infect banana fruit slices. pNC121 was used as positive control, pNC121 with 35S promoter removed was used as negative control for GUS staining. The dyeing result shows that the useMaMADS36Promoter-infected banana flakes were much bluer than the negative control but lighter than the positive control, indicating thatMaMADS36The promoter has a certain promoter activity (FIG. 6C).
Example 8 MaEIL6 pairMaMADS36Analysis of transcriptional regulatory action of (a)
1. Yeast single hybridization
1. 1 pAbAi-MaMADS36Construction of vectors
（1）MaMADS36Amplification of promoters
Designing a binding site comprisingMaMADS36Promoter sequence (2000 bp) primer plus seamless cloning linker sequence was designed as follows:
MaMADS36P1：5’-AGTGGTCTCTGTCCAGTCCT GACATTTTGTCACTGAATTAA-3’，
MaMADS36P2：5’-GGTCTCAGCAGACCACAAGTCTTT GTTGATGTCCTTTG-3’；
the amplification system was as in Table 2 and the PCR procedure was as in 1.5, using Brazil banana DNA as template. After the amplification reaction was completed, the product was recovered and subjected to Nimble cloning ligation, and the ligation system was as shown in Table 9. After the ligation reaction is finished, E.coli competence is transformed, PCR identification is carried out on selected bacteria, the strains with positive detection are sent to sequencing, and the strains with correct sequencing are activated, cultured and plasmids are extracted. The plasmid is pAbAi-MaMADS36Recombinant plasmids.
1.2 Background screening of AbA
(1) Transformation of Y1H Gold yeast competence
The constructed pAbAi-MaMADS36And pAbAi-p53i plasmidBstBI single enzyme digestion, enzyme digestion system is shown in Table 9:
TABLE 9 pAbAi-MaMADS36Single enzyme digestion system of (C)
And (5) enzyme cutting at 65 ℃ to obtain 1-h. After the electrophoresis gel is detected correctly, the target fragment is purified and recovered, and the Y1HGold yeast competent cells are transformed. The conversion steps are as follows:
(1) 10 μl of Carrier DNA was denatured in boiling water at 100deg.C for 5min, rapidly in ice for 2 min, and repeated 1 time. Taking out the Y1Hgold saccharomycete competence (100 mu L) from the temperature of minus 80 ℃ and inserting the same on ice, and respectively adding 2 mu g pAbAi-MaMADS36And pAbAi-p53i plasmid, and carrying out gentle suction and beating and mixing on denatured Carrier DNA and 500 mu L PEG/LiAc.
(2) The metal bath is carried out at 30 ℃ for 30min (uniformly mixed for 6-8 times every 15 min).
(3) The metal bath is carried out at 42 ℃ for 15min (uniformly mixed for 6-8 times every 7.5 min).
(4) Centrifuge at 5000rpm for 30 s, discard supernatant.
(5) With 400. Mu.L ddH 2 O was resuspended 1 time, centrifuged at 5000rpm for 30 s and the supernatant discarded.
(6) Adding 50 mu L ddH into a tube 2 O was resuspended, spread on SD/-Ura solid medium, and cultured in inversion at 28℃for 48-96 h.
Positive colonies were picked and identified for pBait-AbAi integration into the Y1HGold genome by PCR using the following:
the strain detected correctly is preserved (4℃for one month on a streak plate, -80℃with glycerol). This plate was a Y1HGold [ Bait/Abai ] positive strain.
(2) AbA background expression level screening
Picking Y1Hgold [ Bait/Abai ]]Monoclonal culture medium of positive strain is sucked and beaten uniformly by 100 mu L of 0.9% NaCl solution, absorbance is measured, and bacterial liquid is diluted to OD according to proportion 600 =0.002. 100 mu L of mixed solution is absorbed and evenly coated on SD/-Ura solid culture medium added with AbA antibiotics with different concentrations, the AbA concentration is set to be a gradient every 100 ng, and the setting range is 0-1000 ng/mL. Inverted culturing at 30deg.C for 48-72 h. Observing the growth condition of single colony in the plate under different AbA concentrations, if a certain concentration of yeast cannot grow, carrying out fine screening in the concentration range, and finally screening the AbA expression level to be the lowest concentration at which the yeast cannot grow or the concentration 50-100 ng/mL higher than the lowest concentration.
1.3 Yeast transformation
(1) Y1H Gold (pBait) Yeast competent preparation
(1) Picking up pAbAi-MaMADS363-5 clones were grown in3 mL YPDA medium on SD/-Ura plates and activated at 200 rpm in a shaker at 30℃for 8-12 h.
(2) Selecting active fungus solution, sucking 5 μl, adding into YPDA culture medium of 50 mL at 25The conical flask of 0mL is further incubated, 16-20 h to OD 600 =0.15-0.3。
(3) Collecting bacterial liquid in 50 mL centrifuge tube, centrifuging 700 g for 5min, discarding supernatant, adding 50 mL YPDA, resuspending, culturing in 250 mL conical flask for 3-5 h to OD 600 =0.4-0.5。
(4) Collecting thallus, centrifuging for 700 g for 5min, discarding supernatant, and adding 30 ml ddH 2 O, centrifuge 700 g for 5min, discard supernatant and resuspend pellet in 1.1 XTE/LiAC of 1.5 mL.
(5) The cell suspension was transferred to a 1.5 mL centrifuge tube at 12000rpm for 50 s, the supernatant was discarded, and 600. Mu.L of 1.1XTE/LiAC was added to the pellet in the tube. Yeast Bait-MaMADS36Competent preparation was complete (storage on ice, conversion in 2 h).
(2) Verification of the Y1HGold (pBait) Yeast competence and Prey expression vector interaction
(1) Taking 50 mu L of Bait-MaMADS36Yeast competent cells were sequentially added with pre-chilled 100 ng of the Prey expression vector pGADT7-MaEIL6Mixing with 5. Mu.L of Carrier DNA (95-100deg.C water bath for 5min, rapid ice bath for 2 min, repeated once), 500. Mu.L PEG/LiAC in 1.5 centrifuge tube, and gently mixing.
(2) The centrifuge tube is placed in a metal water bath at 30 ℃ for 30min, and is mixed reversely and uniformly (vortex mixing) every 10min.
(3) Then, 20. Mu.L of DMSO was added to the centrifuge tube, and the mixture was pipetted and mixed.
(4) And (3) placing the centrifuge tube into a metal water bath kettle at 42 ℃ for heat shock for 15min, and reversing and uniformly mixing every 5min.
(5) The centrifuge tube was removed, 12000rpm, for 30 s, and the supernatant discarded.
(6) Respectively adding 1.1 mL YPD plus Medium, shaking, and shaking at 30deg.C for 10-30 min.
(7) High speed centrifugation 12000rpm, 15 s, discard supernatant.
(8) 1mL of 0.9% NaCl was added to the mixture and resuspended, and 100. Mu.L of the mixture was pipetted onto SD/-Leu plates.
(9) After colonies were grown, single colonies were picked and dissolved in 1mL of 0.9% NaCl, OD 600 Regulating to 0.2, and spot-coating on SD/-Leu and SD/-Leu with AbAOn the solid medium, the growth of each group of yeasts was observed to determine the interaction.
2. Gel retardation experiment (Electrophoretic mobility shift assay, EMSA)
Will beMaEIL6Cloning the coding sequence of the gene into pGEX-4T-1 vector (Amersham Biosciences, USA) to obtain recombinant protein with GST (glutethione S-transfer) tag, and transforming the recombinant proteinEscherichia coliThe resulting protein was purified using the strain BM Rosetta (DE 3) using a Glutathione-Superflow Resin (Clontech). The 15 bp probe sequence from the MaMADS36 promoter comprising a cis-acting element binding to MaEIL6 was synthesized by Shanghai, and was labeled at its 5' end with biotin. Reference to Xiao for specific procedures of EMSAet alThe method of (2018).
3. Double luciferase reporter assay
3.1 Vector construction and agrobacterium transformation
(1) Construction of vectors
According toMaMADS36The gene promoter sequence is designed and amplified to be full length, and pAbAi-MaMADS36Plasmid is taken as a template, and two ends are addedKpnI andBamHi cleavage site, and the amplified target fragment is inserted into pGreenII 0800-LUC expression vector containing reporter gene. Amplification ofMaEIL6Gene full length, pMD19-T-MaEIL6Plasmid is used as a template, and is added respectivelyEcoRI andXhothe cleavage site was ligated into pGreenII 62-SK vector. The primers were designed as follows:
pGreenⅡ0800-LUC-MaMADS36 P1： 5’-GGTACCGACATTTTGTCACTGAATTAA-3’；
pGreenⅡ0800-LUC-MaMADS36 P2：5’-GGATCCCTTTGTTGATGTCCTTTG-3’；
pGreenⅡ62-SK -MaEIL6 P1：5’-GAATTCCGTCGTATGTGGAGAGATA-3’，
pGreenⅡ62-SK-MaEIL6 P2：5’-CTCGAGG GTGCATCTTCATGTAGAA-3’；
amplification, recovery, ligation, transformation identification and measurement. And (5) amplifying bacterial liquid with correct sequencing by culture and extracting recombinant plasmid.
(2) Transformation of Agrobacterium GV3101
pGreenⅡ0800-LUC-MaMADS36And pGreenII-62-SK-MaEIL6The plasmids were transformed with Agrobacterium competent GV3101 (containing the pSoup plasmid, tetracycline resistance), respectively. pGreenII 0800-LUC and pGreenII 62-SK empty vectors were also transformed as controls. Reference is made to the transformation method for the transformation of Agrobacterium EHA105 described above.
3.2 Tobacco transformation and transient expression
(1)GV3101/pGreenⅡ-LUC-MaMADS36、GV3101/pGreenⅡ-62-SK-MaEIL6、Control group: GV3101/pGreen II 0800-LUC-MaMADS36And GV3101/pGreen II-62-SK in YEP liquid medium (25. Mu.g/mL Rif, 50. Mu.g/mL Kan and 20. Mu.g/mL Tet), at 30℃and 220 rpm activation expansion to OD 600 =0.8 or so.
(2) The cells were collected at 5000rpm and centrifuged for 10min.
(3) The bacterial cells are resuspended to OD by using an infection solution 600 =1.0, standing at room temperature for 2 h.
(4) GV3101/pGreen II-LUC-MaMADS36With GV3101/pGreen II-62-SK and GV3101/pGreen II-62-SK, respectivelyMaEIL6Mixing uniformly in a volume ratio of 1:3.
(5) The mixed bacterial liquid is injected from the back of tobacco leaves by a 1mL injector without a needle. In order to ensure the consistency of experimental background, the bacterial solutions of the control carrier and the experimental target carrier are required to be injected on different positions of the same blade.
(6) Culturing at room temperature for 1-3 d times, spraying water to leaf for 1-2 times every day, and maintaining moistening.
3.3 Dual luciferase reporter activity assay
(1) Taking 3-4 leaf discs with the diameter of 6-8 mm, putting the leaf discs into a mortar for grinding, taking 80 mg powder, and adding 100 mu L of lysate into a tube.
(2) Incubating on ice for about 5min, and fully lysing the leaves.
(3) Centrifuge at 12000rpm for 1 min, take 20. Mu.L supernatant, add to, light-tight white ELISA plate. 3-5 well replicates were set.
(4) The firefly luciferase reaction working solution and the Renilla luciferase reaction solution were prepared by diluting the firefly luciferase substrate (50×) and the Renilla luciferase substrate (50×) to (1×) with the corresponding buffers, respectively. And incubated to room temperature (note ready-to-use).
(5) Adding 100 mu L of firefly luciferase reaction solution, uniformly mixing the plates, and detecting the activity of firefly luciferase by setting the detection time to be 2-10 s, wherein the detection is completed within 30min as much as possible.
(6) Adding 100 mu L of Renilla luciferase reaction solution, shaking the plate, mixing, detecting the activity of Renilla luciferase, and completing the detection within 30min.
(7) The firefly luciferase/Renilla luciferase activity values were calculated.
3.4 Living plant luminous imaging observation
After the bacterial solutions in 3.2 are mixed uniformly in a ratio of 1:3, four combined bacterial solutions are injected into the same leaf and divided into a control group and an experimental group. 48 After h, shooting and observing by using a living plant luminous imaging system, and re-injecting a reaction substrate D-luciferin potassium salt on tobacco leaves in dark before observing, wherein the injection method is to inject the reaction substrate D-luciferin potassium salt from the back of the tobacco leaves by using a 1mL needleless injector.
5. Conclusion(s)
5.1MaEIL6And (3) withMaMADS36Promoter interaction analysis
Research of ethylene signal transduction key gene by using yeast single hybridization technologyMaEIL6And (3) withMaMADS36Promoter interaction mechanisms were validated with EMSA, dual fluorescein reporter system and in vivo imaging system.
(1) Yeast single hybridization
The banana fruit DNA is used as a template, a primer containing a binding site is designed according to the sequence of the promoter, the full length of the promoter is amplified, seamless cloning joint sequences are added at two ends when the primer is designed, cloning is carried out by using Nimble cloning, and sequencing results prove thatMaMADS36The gene promoter fragment has been successfully inserted into the bait vector pAbAi (FIG. 7A).
The constructed Bait vector pAbAi-MaMADS36And pAbAi-p53i plasmidBstBAnd I, recovering after single enzyme digestion reaction. Converting the enzyme-cleaved productTo yeast Y1HGold competence, 50 mu L of the transformation product is coated on SD/-Ura culture medium, single colony is picked up for PCR detection after inversion culture at 30 ℃ for 48-96 h, and whether pBait-Abai is integrated into yeast strain is identified, and pAbAi-p53i is used as positive control. PCR identification and sequencing showed pAbAi-MaMADS36Successful integration of the vector into the yeast genome demonstrated successful transformation of the bait vector.
(2) AbA background screening
Aureobasidin A (AbA) is one of cyclic ester peptide antibiotics, and can inhibit yeast strain growth at a concentration ranging from 0.1-0.5 μg/ml. pAbAi-p53i was used as a control to examine the background expression of aureobasidin, and the growth concentration of the yeast strain was in the range of 0-100 ng/mL. The results indicate that pAbAi is inhibitedMaMADS36The minimum AbA concentration for yeast strain growth was 400 ng/mL.
(3) Yeast single hybridization
To verify whether MaEIL6 is associated withMaMADS36The promoter has an interaction relationship, pAbAi-MaMADS36The bait vector was made into Y1HGold (pBait) yeast, and after co-transformation with the Prey expression vector constructed by MaEIL6, the growth of the yeast cells was observed. As shown in FIG. 6C, yeast cells grew well on SD/-Leu medium without antibiotic AbA. After addition of AbA of 400 ng/mL of antibiotic to the medium, positive control (pGADT 7-p53+p53 promoter), experimental group MaEIL6 andMaMADS36the yeast cells co-transformed with the promoter can grow normally; while the negative control group (pGADT 7-empty+pAbAi)MaMADS36-promoter) the co-transformed yeast cells were unable to grow, indicating that MaEIL6 could bindMaMADS36Promoters of (2), maEIL6 andMaMADS36promoters have interactions.
(4) Gel blocking assay (EMSA) since the promoter of MaMADS36 has the MaEIL6 binding element TGAA-box (fig. 7A), the EMSA technique was used to verify whether MaEIL6 binds directly to the promoter of MaMADS 36.
As shown in FIG. 7D, recombinant MaEIL6 transcription factor was able to bind directly to the TGAA-box on the promoter of MaMADS36, and the binding capacity of MaEIL6 to the promoter of MaMADS36 was significantly reduced with the addition of competing cold probes, whereas unlabeled mutant probes were unable to bind to MaEIL6 (FIG. 7D). The above results indicate that MaEIL6 transcription factor can specifically bind directly to TGAA-box on the promoter of MaMADS 36.
5.2 MaEIL6 pairMaMADS36Analysis of transcriptional control of promoters
(1) Vector construction
According toMaMADS36The gene promoter sequence is designed and amplified to be full length, and pAbAi-MaMADS36Plasmid is taken as a template, and two ends are addedKpnIAndBamHi cleavage site, the amplified fragment of interest was inserted into the reporter gene-containing expression vector pGreenII 0800-LUC (FIG. 6B). By pMD19-T-MaEIL6Plasmid is used as a template, and is added respectivelyEcoRI andXhothe transcription factor MaEIL6 was ligated into pGreenII 62-SK vector at cleavage site and tested for correctness by double cleavage. The double enzyme digestion identification result shows that the construction of the double-fluorescence enzyme expression vector is completed.
(2) Dual luciferase reporting system and in vivo imaging detection
Luciferase activity was detected using a dual luciferase reporter assay kit to verify MaEIL6 andMaMADS36is described herein. Co-infecting tobacco leaves with a reporter vector and an effector vector, andMaMADS36the promoter-empty vector was used as a control group, and the LUC/REN ratio was 1.MaEIL6MaMADS36When the promoters together infect the leaves, the LUC activity is higher than that of the control group. MaEIL6MaMADS36Promoter co-infection tobacco leaf LUC activity was 2.1 fold greater than control (fig. 7E). Similarly, the fluorescence intensity under the living plant luminescence imaging system also visually showed that the two transcription factors and promoter luciferase activities were significantly higher than those of the control group (FIG. 7F), which fully demonstrates the MaEIL6 pairMaMADS36The promoter has transcriptional activation.
Other parts not described in detail are prior art. Although the foregoing embodiments have been described in some, but not all, embodiments of the invention, it should be understood that other embodiments may be devised in accordance with the present embodiments without departing from the spirit and scope of the invention.
Claims (3)
1. The method comprises the following steps ofMaEIL6The application of the gene in cultivating a new variety of fast-maturing high-quality Brazilian banana is characterized in that: the saidMaEIL6The nucleotide sequence of the gene is SEQ ID NO: 1.
2. The application of the recombinant expression vector in cultivating a new variety of fast-maturing high-quality Brazilian banana is characterized in that: the recombinant expression vector comprising the recombinant expression vector of claim 1MaEIL6The expression vector of the gene is pCAMBIA-1300 or pTRV2 or Prey.
3. An application of host cells in cultivating a new variety of fast-maturing high-quality Brazilian banana is characterized in that: the host cell contains the recombinant expression vector of claim 2.
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