Specific implementation mode
For the ease of a further understanding of the present invention, examples provided below has done more detailed description to it.But
It is that these embodiments are only not supposed to be a limitation to the present invention or implementation principle for being better understood from invention, reality of the invention
The mode of applying is not limited to the following contents.
Whole genome sequence data analysis
1) genomic DNA fragment:Genomic DNA is resolved into the piece of about size 300-500bp with Covaris M220
Duan Ruogan;
2) library construction:A&B connectors are connected at DNA fragmentation both ends, then screen removal connector from section in flakes, utilize agarose
Gel electrophoresis carries out segment screening, and it is the segments that A connectors, one end are B connectors to retain one end, finally so that DNA is become with sodium hydroxide
Property, generate Single-stranded DNA fragments;
3) bridge-type PCR:One end of DNA fragmentation and primer base is complementary, it is fixed on chip, the other end is at random near
Another Primers complementary, be also fixed, formed " bridge (bridge) ", PCR amplification, generate DNA clusters, by DNA cloning son
Linearisation becomes single-stranded.
4) Illumina Hiseq 2000 are sequenced:The archaeal dna polymerase be transformed is added and with 4 kinds of fluorescent markers
DNTP, only incorporation single base is read every template sequence first round and is reacted institute cycle with laser scanning reaction plate surface every time
The nucleotide type of polymerization up, will " fluorophor " and " terminate group " chemical cleavage, restore 3 ' and hold sticky, continue polymerization the
Two nucleotide finally count and often take turns the fluorescence signal being collected into as a result, knowing the sequence of template DNA segment;
5) genome splices:Multiple Kmer parameters are carried out to optimization using SOAPdenovo v2.04 splicing softwares
Splicing obtains optimal assembling as a result, carrying out hole filling and alkali in part to assembling result with GapCloser v1.12 softwares
Base corrects.
6) 3.02 (http of Glimmer are utilized://www.cbcb.umd.edu/software/glimmer/) software progress
The protein sequence of predicted gene is carried out blastp by the predictive genes of bacterium with Nr, genes, string and GO database respectively
It compares (BLAST2.2.28+), obtains the annotation information of predicted gene.
7) it is compared by carrying out blastp (BLAST 2.2.28+) with string databases, obtains the COG corresponding to gene
Annotation according to COG as a result, and annotate result to albumen progress function classification.With BLAST algorithm (blastx/blastp
2.2.28+) predicted gene obtained is compared with the gene database (Genes) of KEGG, the KO obtained according to comparison
Number can obtain the specific biological pathways of corresponding gene participation.GO has been carried out to blast results by blast2go softwares
Annotation analysis.
Using 3.02 softwares of Glimmer carry out bacterium predictive genes, by the protein sequence of predicted gene respectively with Nr,
Genes, string and GO database carry out blastp comparisons (BLAST 2.2.28+), and identification bacterial strain SC36 contains 3 ppk bases
Cause is named as ppk33, ppk44 and ppk73, and open reading frame (ORF) size is respectively 2061bp, 2082bp and 2010bp, is divided
It Bian Ma not 686,693 and 669 amino acid.Utilize ProtParam (http://web.expasy.org/protparam/) come
Predict protein amino acid sequence (i.e. primary structure), discovery 3 PPK molecular size range be respectively 78071.0Da,
The theoretical value of 78869.5Da and 76645.3Da, isoelectric point (pI) are respectively 6.34,6.37 and 7.76.
Ppk identified for genes and its protein structure prediction
Utilize SOPMA (http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.plPage=
The amino acid sequence of known ppk gene codes is carried out secondary structure prediction, 3 PPK by npsa_sopma.html) online tool
The secondary structure analysis of albumen finds that the secondary structure of 3 PPK is similar in main structure, but PPK33 and PPK44 and PPK73
There is bigger difference at N-terminal 0-100,200-250 and 350-400 amino acids, and PPK44 and PPK73 is only in 0-50
Larger difference is showed at amino acids, illustrates that there are larger othernesses between the secondary structure of PPK33 and PPK44 and PPK73.
α spirals and random coil proportion are larger in 3 PPK secondary structures, and α spirals proportion is less than PPK44 in wherein PPK33
And PPK73, and random coil proportion is then higher than PPK44 and PPK73, and β-bend proportion is less, only 8% or so.
Utilize SWISS-MODEL (http://swissmodel.expasy.org/) 3 PPK of homology method pair tertiary structure into
Row prediction finds that 3 protein models are substantially the same, only variant in regional area.
1.ppk gene order PCR amplifications are cloned
It is designed and is expanded according to ppk gene orders from genome identification ppk genes according to genome-wide screening sequencing result
The primer of gene complete sequence.
PCR reaction conditions are that annealing temperature is changed to 50 DEG C, 56 DEG C, 53 DEG C, 53 DEG C successively, and extension of time is changed to 4min.
Respectively with the 3 ppk gene total orders for coming from Acinetobacter.tandoii SC36 row for stencil design amplimer, 3
It is as follows to primer sequence and corresponding restriction enzyme.With strains A cinetobacter.tandoii SC36 genomes
For template, complete genetic fragment ppk33, ppk44 and ppk73 are obtained using the method for PCR, 3 target fragments are in 2.0kb
Left and right (Fig. 3), is consistent with expected results.
Expand the primer information of ppk gene orders
ppk33F:CCATGGAAAATTTTCAACATTCATC(NcoⅠ)
R:GCTCGAGGATTTTCTGTAGACTCTTGTTCATC(XhoⅠ)
ppk44F:TGGATCCATGAATACGGCGGCACAGA(BamHⅠ)
R:TGTCGACTTATTTAATCATTTCCAACAAAGTC(SalⅠ)
ppk73F:TGGATCCTTGTCAATTTTAGATTTTAATTTACG(BamHⅠ)
R:TCTGCAGTTACTTTATAACGCTTAACAAAAAG(PstⅠ)
2. recon is built
It is prepared by Competent cell
1) picking E.coil freezes bacterium and is cultivated on LB tablets, and then picking single bacterium is fallen in the LB liquid medium of 5mL,
200
Rpm, 37 DEG C are incubated overnight;
2) it is transferred to by 1% amount in the triangular flask for the LB liquid medium for filling 250mL, is trained under the same conditions
It supports;
3) OD600 of about 2.5h, culture medium are about 0.6 or so;
4) it by triangular flask ice bath 30min, goes in ice-cold 100mL centrifuge tubes, 4 DEG C, 4,000rpm centrifugation 10min;
5) operation below carries out in super-clean bench, keeps ice bath, 4 DEG C of centrifugations are soft to blow and beat, and mix well bacterium solution and (press
250mL bacterium solutions carry out):
6) the careful supernatant that inclines, is resuspended in the 0.1mol/L MgCl2 of ice-cold 50mL, and gently turned upside down is mixed
It is even;
7) ice bath 30min;
8) 4 DEG C, 4,000rpm centrifugation 10min, carefully incline supernatant, places on ice;
9) it is resuspended in the ice-cold 0.1mol/L CaCl2-15%glycerol of 4mL, gently blows and beats mixing;
10) 150 μ L be dispensed into the centrifuge tube of the 1.5mL of precooling;
11) it is placed on spare in -80 DEG C of refrigerators.
Thermal shock converts
1) E.coil competent cells are taken out from -80 DEG C of refrigerators, thaw about 15min on ice;
2) connection product of 10 μ L or 1 μ L plasmids are added in 150 μ L competent cells, place 30min on ice;
3) heat-shock transformed, 42 DEG C of water-bath 1.5min, at once ice bath 3min;
4) the fresh LB liquid mediums of 1mL are added;
5) 37 DEG C, 200rpm cultivates 1h;
6) of short duration centrifugation absorbs part supernatant and stays 400 μ L, and pipette tips piping and druming is uniform, then absorbs 200 μ L conversion fluids to containing
On corresponding antibiotic LB culture medium flat plates, coated plate to tablet is dried;
7) tablet is inverted in 37 DEG C of constant incubators and cultivates 14h-16h.
The extraction of bacterial plasmid
Picking single bacterium is fallen in 5ml LB liquid mediums, 220rpm, and 37 DEG C are incubated overnight.Reference《Molecular Cloning: A Laboratory
Guide》Alkaline lysis extract Plasmid DNA in a small amount, and its experimental procedure and related reagent are improved, the specific method is as follows:
1) 1.5mL thalline are collected by centrifugation in 10,000rpm, 2min, and extra culture medium is absorbed in then of short duration centrifugation;
2) thalline is fully blown and beaten with pipette tips again is suspended in 150 μ L Solution I (with RNase);
3) 300 μ L Solution II, gently turned upside down mixing 5 times or so are added, until liquid becomes as clear as crystal;
4) 250 μ L Solution III are added, gently turned upside down 5 times or so, place 10min on ice at once;
5) 12,000rpm centrifuges 15min, and then supernatant is transferred in the centrifuge tube of the heart;
6) isometric isopropanol, turned upside down mixing is added;
7) 12,000rpm centrifuges 5min, and carefully incline supernatant;
8) 700 μ L, 70% ethyl alcohol (not acutely concussion) is added, 12,000rpm centrifugation 2min, carefully incline supernatant;
9) 8) step operation is repeated;
10) of short duration centrifugation carefully sucks extra ethyl alcohol with pipette tips;
11) 30min or so is spontaneously dried, 50 μ L TE dissolving DNAs are added;
12) be vortexed dissolving, and -20 DEG C save backup.
Ppk gene PCRs purified product and pMD 18-T carrier enzymes are connected.Enzyme connects reaction system:Takara SolutionⅠ5
0.5 μ L, PCR purified products of μ L, pMD 18-T 4.5 μ L, 10 μ L of total volume.Connection product is placed in 4 DEG C, 16h.Digestion recycling production
Object connects reaction system with expression vector pET-28a or pQE-30a enzyme:Insert DNA 5 μ L, pQE-30 3 μ L, T4DNA
1 μ L, Ligase Buffer of Ligase 1 μ L, 10 μ L of total volume.Connection product is placed in 16 DEG C, and 4 DEG C of refrigerator mistakes are placed into after 1h
Night.
PCR product after recycling is subjected to enzyme company with pMD 18-T Vector respectively, in Transformed E .coli JM109,
It is even to be coated on the LB tablets containing Amp (100 μ g/mL), picked clones.It extracts the plasmid of clone and carries out double digestion and test
Card takes carrier pET-28a plasmids, pQE-30a plasmids and ppk genes and pMD 18-T enzymes to connect plasmid, carries out double digestion.Double digestion
Reaction system:20 μ L Plasmid DNA, 10 μ 10 × buffer of L, enzyme 1 and enzyme 2 each 0.5 μ L, 100 μ L of total volume.In 37 DEG C of overnight enzymes
It cuts., it can be seen that segment and gene (about 2.0kb) and pMD 18-T carrier segments (about 2.7kb) are big obtained by 4 recombinant plasmid digestions
It is small to be consistent, it is identified as correct recon.
3.ppk gene expressions
Clone and expression vector are subjected to a large amount of digestions with corresponding enzyme respectively, after agar electrophoresis, divided under ultraviolet light
Poly- phosphorus gene and vector gene band are not cut, carry out glue recycling, then be connected to two recovery products with T4DNA Ligase
Expression vector is constituted together.The restriction enzyme site of 4 genes of control design design, the multiple cloning sites of pQE-30a carriers are containing limited
The restriction enzyme site of property restriction endonuclease BamH I processed, Sal I, Hind III and Pst I, the then enzyme containing Nco I and Xho I in pET-28a carriers
Enzyme site.So gene ppk44, ppk73 are connected with pQE-30a enzymes respectively, composition expression vector pQE30a-ppk44,
PQE30a-ppk73, and the enzyme of gene ppk33 and pET-28a are even constituted into expression vector pET28a-ppk33.After conversion respectively
Picking expressor extracts plasmid and is verified.Correct positive recombinant plasmid bacterial strain will be verified and be sent to Shanghai Sangon Biotech Company's survey
Sequence, sequencing result prove that the expression vector of 3 genes is built correctly.
IPTG induced expressions
1) picking expressor single bacterium is fallen in the LB liquid medium that 5mL contains corresponding antibiotic, 200rpm, and 37 DEG C overnight
Culture;
2) it is forwarded in the fresh LB culture mediums containing identical antibiotic of 5mL by 1% amount within second day, culture 2h is extremely
OD600About 0.6 or so;
3) IPTG (500mg/mL) that 8 μ L are added in each culture bottle makes the IPTG final concentrations in culture medium reach 0.8 μ g/
ML, 200rpm, 37 DEG C of culture 18h;
4) 10,000rpm centrifuges 2min, collects the thalline of 5mL;
5) the PBS buffer solutions of 1mol/L wash 2 times to remove LB culture mediums to thalline, are then separately added into 1mL's again
The abundant suspension thalline of ddH2O buffer solutions;
6) ultrasonic disruption, 200w, total time 3min, the intervals 10s;
7) 12,000rpm centrifuges 5min, collects supernatant precipitation respectively, and precipitation is resuspended in the ddH of 1mL2O bufferings are molten
It is washed 2 times in liquid;
8) ddH of 500 μ L is added in the precipitation washed2O buffer solutions, supernatant precipitation are placed in -20 DEG C of preservations.
PAGE gel electrophoresis
SDS- gel electrophoresises are carried out using 10% vertical electrophoresis system, experimental procedure is as follows:
1) two pieces of glass offset plates are cleaned up, illustratively by offset plate assembly on gum-making rack after drying;
2) polyacrylamide gel is prepared
Separation gel composition is as follows:ddH212 8 μ of μ L, TEMED of O 3mL, RGB 1.5mL, Acrylamide 1.5mL, APS
L。
After separation gel solidification, it is immediately ready for spacer gel, composition is as follows:500 μ L of ddH2O 1.17mL, SGB,
55 μ L of μ L, TEMED of Acrylamide333 μ L, APS.
After spacer gel is added, it is inserted into comb at once, comb is removed after solidification is put into electrophoresis tank and carry out electrophoresis.
3) broken precipitation or 20 μ L of supernatant are taken, 2 × Sample Buffer, boiling water boiling 5min, 12,000rpm is added
Centrifuge 5min, take 10 μ L sample loadings, after fully entering separation gel to sample with 80V voltage constant pressure electrophoresis, adjust voltage to
110V, constant pressure electrophoresis is until the bromophenol blue of instruction reaches gel bottom;
4) electrophoresis terminates, and carefully strips gel, gel is put into Stain Buffer after distilled water cleaning, 60rpm dyes
Color 40min;
5) after dyeing, distilled water cleans gel, and 50mL quick decolorization liquid, 60rpm oscillation decolorations 30min is added;
6) quick decolorization liquid is outwelled, 50mL destainers at a slow speed, 60rpm oscillation decolorations, until can be observed clearly is added
Protein band;
7) gel is eluted with water, uses Bio-Rad GS-800 Calibrated Densitometer scanning systems pair
Protein gel is taken a picture, and is analyzed protein band image and its concentration using Quantity One softwares.
SDS-PAGE electrophoretic analysis show express bacterial strain can under IPTG concentration 0.8mM, 37 DEG C of condition of culture big scale
It reaches, albumen size is consistent with prediction result.Keep IPTG concentration constant, it is 16 DEG C, 20 DEG C and 28 DEG C to change inducing temperature, timesharing
Between take bacterium solution extract albumen, using SDS-PAGE electrophoresis detections, at 16 DEG C when Fiber differentiation 18h albumen supernatant detection, phase
Than in the expression structure of pQE-30a zero load bacterial strains, M15/pQE30a-ppk44, M15/pQE30a-ppk73 and BL21 (DE3)/
PET28a-ppk33 has apparent protein band (Fig. 4) occur in 75kDa or so, shows that 3 expression bacterial strains can be at low temperature
Destination protein is expressed into supernatant, is soluble protein.
4. molybdenum-antimony anti-spectrophotometric method
1) Specification Curve of Increasing
It prepares phosphorus standard and uses solution.Take 0 respectively, 0.2,0.4,0.8,1.2,1.6,2,3,4,5mL phosphorus standard solution it is (dense
Degree be 2 μ g/mL) in test tube with cover, be added distilled water to total volume be 10mL, be added 1.6mL potassium peroxydisulfates, mixing, 120 DEG C
Clear up 30min.After cooling, 0.4mL ascorbic acid solutions, mixing is added;After 30s, addition 0.8mL molybdate mixed liquors, mixing,
It is stored at room temperature 15min.Under 700nm wavelength, with No. 1 for blank reference, its absorbance is measured, and draw standard curve.
2) total phosphorus content in bacterium solution measures
1.5mL bacterium solutions are taken to be placed in sterilized centrifuge tube, 4 DEG C, 6000rpm centrifuges 15min.After taking 1mL to centrifuge respectively
Supernatant, the culture solution, the distilled water that do not connect bacterium be placed in test tube with cover, it is 10mL that distilled water to total volume, which is added, is added
1.6mL potassium peroxydisulfate, mixing, 120 DEG C of resolution 30min.After cooling, 0.4mL ascorbic acid solutions, mixing is added;After 30s, add
Enter 0.8mL molybdate mixed liquors, mixing is stored at room temperature 15min.Under 700nm wavelength, to distill water pipe as blank reference, respectively
Measure its absorbance.
It is control with the E.coli bacterial strains containing pET-28a or pQE-30a, expression bacterial strain is inoculated in synthetic wastewater training respectively
It supports in base, 37 DEG C of good support are cultivated, and are acquired bacterium solution after IPTG derivants 10h is added, are measured the bacterium solution of expression bacterial strain and control strain
Supernatant phosphorus content, and the dephosphorization amount and poly- phosphorus rate (table 1) of each bacterial strain are counted respectively, expression bacterial strain BL21 (DE3)/pET28a-
The dephosphorization amount of ppk33 is 3.3 times of its corresponding control strain, and expression bacterial strain M15/pQE30a-ppk44 is that it corresponds to control strain
7 times of dephosphorization amount, the poly- phosphorus rates of 10h are up to 70%, show corresponding ppk genes overexpression in E.coli, thalline is caused to accumulate
Poly- poly P, to make a large amount of phosphate in culture medium be effectively removed.
Table 1 expresses the poly- phosphorus ability of bacterial strain and measures (the initial concentration of synthetic wastewater phosphorus:10.11μmol/L)
Sequence table
<110>Hainan Normal University
<120>Three Polyphosphate kinase genes and the application in sewage dephosphorization
<130> 1
<160> 6
<170> SIPOSequenceListing 1.0
<210> 1
<211> 2061
<212> DNA
<213> Acinetobacter. tandoii
<400> 1
atggaaaatt ttcaacattc atcagaaact tattttaatc gtgaattggc attactggag 60
tttaaccgac gcgtcttggc gcaagcacgc aataccgatt taccgctttt agaacggctc 120
aactttctca ttattttctc ccgcaacttg gacgagtttt ttgaaattcg tgttgcgggt 180
ttaatgaagc aacaggattt aaatgcgctg acgcgtatgc ctgatgccat tccgaccgat 240
gtggtgctag cagaactgtc acaacgggta catcaggcgg tacaggaaca gtacgatatt 300
ttgaatcatg ccatcctgcc gcagttacag gggctgggta ttcattttat tcagtaccaa 360
gacattttgg aaaagcataa agcgtggatc gctgcttatt ttgccaagca agttcaacca 420
gtcttgaccc cgattagcct tgatccatca catccttttc cgcgcttggt gaataaaagc 480
ctgaatttta ttgtcagttt ggaaggtaaa gatgcctttg ggcgcgagat agaactggca 540
attgtgcctg caccgcggtc attaccacgt ttaatcagtt tgcctgaaag cgtggaagga 600
caagaagaac aaatctttct gaccgcgatt attcagcaac atatcagtga cttgtttcca 660
gggatgaaag ccacaggctg ctatgccttc cgtgtaaccc gcaatgccga tttaatttta 720
tcggaagatg ttgatgattt ggcggtggcg ttaaaagatg aattgtcttc acgccgtttt 780
gggcgtgcgg tacgtttgga aattgaagat gattgcccgc gtagtattgt ggattattta 840
ttgaatgaat ttgatctcga tcaacaacat ttgtattcga tttcgggtcc gatcaattta 900
tcgcgcttga ccacgcattt taagcgtcca gatttaaaat atccggtctt taatcctgtt 960
attccgaagc cttttcgtaa gcagcagtcc atctttgagc ttttgaaaaa agaagatgtg
1020
ttgttgcatc atccttttga ttctttccag cctgtgatta gcctgttacg tgaagccgcg
1080
aaagatccaa atgtattggc gattaaacag accttgtatc gtagcggacc tgattccgag
1140
attgtgcaag tactggcaga agcggcacgc aatggtaaag aagtcactgc ggtgattgaa
1200
ctccgcgcac gttttgatga agagtccaat attaccgtgg ccaatgtttt gcaagaagca
1260
ggtgctgtgg tggtgtatgg cattgtgggc tataaaaccc atgccaaaat gattttgatc
1320
gtgcgccgag aagagcagca gttggtgcgt tatgtgcatt taggcacagg caattatcat
1380
gcgggcaatg ccaaactcta taccgattat agtttgatga ccacccagcc cgatatctgt
1440
gaagatgtgc atcgcatgtt ccaagaactg acgggcatgg gaaaaatggc aaaattaaaa
1500
accttgctgc atgcaccgtt taccttacat gctgaattac tcaagctgat tgagcaggaa
1560
atagaatatg cgcaagcggg caaaactgca cggattatca ttaaggtcaa tgccctgacc
1620
gaaccgcagt tgattgctgc tttatatcgg gcctcacagg ctggggtaaa gattgacctg
1680
attatccgtt ctatttgttg cttagtgccg caattggcag ggctatccga taatattcgg
1740
gtgcgttcaa ttgtggggcg ctttctggaa catacccgag tctattattt tgagcagggc
1800
ggggaaaaga aactgtactg tgccagtgcc gattggatgg gacgtaattt gttctcacgg
1860
gttgaaacct gtttcccgat tttagatccg aagattaaga agcggatttt acaagatggc
1920
ttacaaaact acttgtctga tcatcacgga acttgggaac tccaagcctc tggcgagtgg
1980
ttgaaagcgc aagcacctga agggcaggtg ccgcattcgg cacaggaatt tttgatgaac
2040
aagagtctac agaaaatcta g 2061
<210> 2
<211> 2082
<212> DNA
<213> Acinetobacter. tandoii
<400> 2
atgaatacgg cggcacagac tcctttagag ccagttgaat atacttataa tgatcgattt 60
attaatcgtg aactttctat tttagatttc catttacgtg ttcttgagca agctgtcgat 120
ccgctgcatc cactcttgga acgcatgaac ttcttgctta ttttctcacg taatttagat 180
gagttttttg aaattcgtgt cgcaggcatg atggaacagc ttgatttggg caatgaaagt 240
cacaccccag atggattgac gccgaaacaa gtgttggaac agatttcgca aactgctcat 300
gcggcgattg aacgtcaata ccgtatttta aatgaagaaa ttttggcgaa actgcgcgaa 360
gaagatatct gcttcttacg ccgtggagag ttgacgccag cccaatcttc ttgggtgaaa 420
aaatacttcc aagaacaggt tgcgcccgtc ttaaccccaa ttagcctaga ccctgcacat 480
ccattcccgc gattagtcaa taaaagctta aactttattg tgacgctaga agggaaggat 540
gcttttggtc gtcagattga cttggccgtt gtacctgcac cacgctcatt gcctcgtgta 600
gtgcgtttac cggatgagct aacggggggt aaagaacatc atgtgatgtt gtctgccatt 660
attcatgagc atgtgtctga cctcttcccg gggatgacag caacgggttg ttatcagttc 720
cgtgtgacgc gtaatgccga tttagcctta aatgaagatg ttgaagactt agccaaagcg 780
ctcaaaggtg aattgaactc tcgccgtttt ggtcgtgcag tacgtttgga agtgactgag 840
aattgtccga aacatattta tgattatttg ctgaatgagt ttgatcttga agaagagcaa 900
ctgtataagg tggatggtcc agtcaacttg gcacgcttac tgtctaattt taagcgcccg 960
catttacgtt atgacacgca tacacctgta attccgaagg tgctaaaaaa gtctgaaaac
1020
attttttctg ctatgcaaaa gcaggacatt ctattacacc atccgtatga atcttttgcg
1080
cctgtgatca atttactgcg tgaagctgca cgtgatccgc aggtattggc aatcaagcaa
1140
accttgtacc gcagtggtgc cgattctgag attgtacaag tattggcaga ggctgcgcgt
1200
aacggtaaag aagtcactgc ggtgatagaa ttgcgtgccc gttttgatga agaatccaat
1260
atcgcggtag cgaatgtgct gcaagaagct ggtgcagtgg tggtgtatgg cattgtaggc
1320
tataaaaccc atgccaaaat gattttggtg gtacgccgtg aaaacaacaa attggtgcgt
1380
tatgtacatt taggtacagg taactaccat gcgggcaatg cacgtatcta taccgactac
1440
ggtttactca cgactgataa ggaactctgt gaagatgtgc atcgcatttt ccaagagtta
1500
acaggcatgg gtaaaatggc taagttgaaa aagctgttgc atgcgccatt taccttgcac
1560
gcacaactcc tcaatttcat tgatgatgag attgccaatg ccaaagcagg caaacctgcg
1620
caaatcattg tcaaagtgaa tgcactgact gaactgcaat taattaataa actttatgaa
1680
gcatcacaag ctggcgtgca gattgatctg attattcgtt caatttgttg cttacgtccg
1740
ggtttaccgg gtctgtctga aaatattcgt gtacgttcaa ttgtcggtcg tttcttggaa
1800
catactcgcg tttattattt tagtaataat ggcaatccgc atgtgtactg ctcaagtgca
1860
gactggatgg atcgtaactt gtttaatcga gttgaagcgt gcttcccaat tgaagatcca
1920
gcactgaaaa agcgaattta tcagcaaggt ttatttaatt atttaaaaga caatcaacag
1980
gcatggctat tacaaggtga tggctcatgg gtgcgtgcgc aagtggcaca gggtgaagat
2040
gcttataacg cacaaaggac tttgttggaa atgattaaat aa 2082
<210> 3
<211> 2010
<212> DNA
<213> Acinetobacter. tandoii
<400> 3
ttgtcaattt tagattttaa tttacgtgtc ttagaacaag cggtcgatcc tttaaatcca 60
ctcttagaaa aattgaattt tttattaatt ttttctagaa atttagatga gttttttgaa 120
attcgtgttg caactatgtt ggaacatttt gttcaagagc gagacataca aacggctgat 180
ggtttatccc cacaagaaat tttacatcaa atttcggaga cagcacatgc tgcgattgaa 240
cgccaatatc aaattttaaa tgagcaaatt tttccgcagt taagagaaga aggcatcagc 300
tttttaagac gtggagagtt aactcaagca caatctaatt gggtcaaaaa atattttcag 360
gaacaggttg caccagcctt aacaccaata agtttagatc ctgcgcatcc ctttccacgc 420
ttggtcaaca aatcacttaa tttcattgtg actttggaag gtaaggatgc ctttggccgt 480
cagatcgatt tggcagtggt tcctgcacca cgttcattgc cacgtgtggt gcgtttgcca 540
gatgagttga ccgaaggcaa agagcatcat gtgatgctct cttcaattat tcatactcat 600
gtgtctgatt tatttccggg aatgacggca acgggttgct atcaatttag agtaacccga 660
aatgcagatt taacgttaac tgaagatgtt gaagacttag cggaagcctt aaaagacgaa 720
ctcagttcac gccgttttgg tcgggcagta cgtttggagg tcaataaaaa ttgtccaaca 780
catatttatg aatacttact caaagaattc gatttggata cgcatcaatt gtatcgtgtc 840
gacgggcctg ttaatttggc tcgattggtc tcggatttta aacgcccata tttacgctat 900
gagccacata ctcctgtgat tccaaaaata ctgaaaaaat ctgcaaatat tttcagtgcg 960
atgcagaaac aagatatttt attgcatcat ccttttgaat cattttcccc tgtaattcga
1020
ttattacgtg aagccgcgca agatccgcat gttttggcca ttaaacagac cttgtaccgt
1080
agcggtgcaa attcagaaat tgtgcaaatt ttggctgagg cggcaagaaa tggtaaagaa
1140
gtcaccgcag tgattgaatt acgggcacgg tttgatgaag agtccaatat cgctgttgcc
1200
aatgttttac aggaagcggg tgccgtggtg gtatatggca ttgtcggcta taaaactcat
1260
gccaaaatga ttttggtggt acgccgagaa aatcaaaaac tggtgcgcta cgcacattta
1320
ggtacaggaa attatcatgc tggcaatgcc aaaatttaca ctgattacgg tttattaacg
1380
accaatcaag atttgtgtga agatgtacat cgtatttttc aagaattaac cggtatgggc
1440
aaaatggtga agttaaagaa acttctacat gcaccattta ctttgcatag tcagttgatg
1500
aattttattg aaaacgagat tgtgcttgcg aaagcaggga aaccggcaaa aattatcatt
1560
aaggtcaatg cactaaccga agttcaattg attaataaat tatacgaagc ttctcaagct
1620
ggtgtgcaaa tagaattaat cattcgttct atttgttgtt tacgtccagg cctaattggc
1680
ttatcagaaa atattcgtgt tcgctcaatt gtagggcgtt ttcttgagca tactcgtgtc
1740
tattattttt acaataatgg tgatacacgt gtgtattgtt ctagtgctga ctggatggag
1800
cgtaatttat ttaaacgtgt tgaagtgtgc tttcctattg aaaatactag actcaaaaaa
1860
agaatttatc agcaagggtt agaaaattat ttaatggata atcaacaagc atggctatta
1920
caaagtgatg gtagttggaa gcgtaactca tgcatagaaa atgaaaagcc acataatgcg
1980
cagcactttt tgttaagcgt tataaagtaa 2010
<210> 4
<211> 686
<212> PRT
<213> Acinetobacter. tandoii
<400> 4
Met Glu Asn Phe Gln His Ser Ser Glu Thr Tyr Phe Asn Arg Glu Leu
1 5 10 15
Ala Leu Leu Glu Phe Asn Arg Arg Val Leu Ala Gln Ala Arg Asn Thr
20 25 30
Asp Leu Pro Leu Leu Glu Arg Leu Asn Phe Leu Ile Ile Phe Ser Arg
35 40 45
Asn Leu Asp Glu Phe Phe Glu Ile Arg Val Ala Gly Leu Met Lys Gln
50 55 60
Gln Asp Leu Asn Ala Leu Thr Arg Met Pro Asp Ala Ile Pro Thr Asp
65 70 75 80
Val Val Leu Ala Glu Leu Ser Gln Arg Val His Gln Ala Val Gln Glu
85 90 95
Gln Tyr Asp Ile Leu Asn His Ala Ile Leu Pro Gln Leu Gln Gly Leu
100 105 110
Gly Ile His Phe Ile Gln Tyr Gln Asp Ile Leu Glu Lys His Lys Ala
115 120 125
Trp Ile Ala Ala Tyr Phe Ala Lys Gln Val Gln Pro Val Leu Thr Pro
130 135 140
Ile Ser Leu Asp Pro Ser His Pro Phe Pro Arg Leu Val Asn Lys Ser
145 150 155 160
Leu Asn Phe Ile Val Ser Leu Glu Gly Lys Asp Ala Phe Gly Arg Glu
165 170 175
Ile Glu Leu Ala Ile Val Pro Ala Pro Arg Ser Leu Pro Arg Leu Ile
180 185 190
Ser Leu Pro Glu Ser Val Glu Gly Gln Glu Glu Gln Ile Phe Leu Thr
195 200 205
Ala Ile Ile Gln Gln His Ile Ser Asp Leu Phe Pro Gly Met Lys Ala
210 215 220
Thr Gly Cys Tyr Ala Phe Arg Val Thr Arg Asn Ala Asp Leu Ile Leu
225 230 235 240
Ser Glu Asp Val Asp Asp Leu Ala Val Ala Leu Lys Asp Glu Leu Ser
245 250 255
Ser Arg Arg Phe Gly Arg Ala Val Arg Leu Glu Ile Glu Asp Asp Cys
260 265 270
Pro Arg Ser Ile Val Asp Tyr Leu Leu Asn Glu Phe Asp Leu Asp Gln
275 280 285
Gln His Leu Tyr Ser Ile Ser Gly Pro Ile Asn Leu Ser Arg Leu Thr
290 295 300
Thr His Phe Lys Arg Pro Asp Leu Lys Tyr Pro Val Phe Asn Pro Val
305 310 315 320
Ile Pro Lys Pro Phe Arg Lys Gln Gln Ser Ile Phe Glu Leu Leu Lys
325 330 335
Lys Glu Asp Val Leu Leu His His Pro Phe Asp Ser Phe Gln Pro Val
340 345 350
Ile Ser Leu Leu Arg Glu Ala Ala Lys Asp Pro Asn Val Leu Ala Ile
355 360 365
Lys Gln Thr Leu Tyr Arg Ser Gly Pro Asp Ser Glu Ile Val Gln Val
370 375 380
Leu Ala Glu Ala Ala Arg Asn Gly Lys Glu Val Thr Ala Val Ile Glu
385 390 395 400
Leu Arg Ala Arg Phe Asp Glu Glu Ser Asn Ile Thr Val Ala Asn Val
405 410 415
Leu Gln Glu Ala Gly Ala Val Val Val Tyr Gly Ile Val Gly Tyr Lys
420 425 430
Thr His Ala Lys Met Ile Leu Ile Val Arg Arg Glu Glu Gln Gln Leu
435 440 445
Val Arg Tyr Val His Leu Gly Thr Gly Asn Tyr His Ala Gly Asn Ala
450 455 460
Lys Leu Tyr Thr Asp Tyr Ser Leu Met Thr Thr Gln Pro Asp Ile Cys
465 470 475 480
Glu Asp Val His Arg Met Phe Gln Glu Leu Thr Gly Met Gly Lys Met
485 490 495
Ala Lys Leu Lys Thr Leu Leu His Ala Pro Phe Thr Leu His Ala Glu
500 505 510
Leu Leu Lys Leu Ile Glu Gln Glu Ile Glu Tyr Ala Gln Ala Gly Lys
515 520 525
Thr Ala Arg Ile Ile Ile Lys Val Asn Ala Leu Thr Glu Pro Gln Leu
530 535 540
Ile Ala Ala Leu Tyr Arg Ala Ser Gln Ala Gly Val Lys Ile Asp Leu
545 550 555 560
Ile Ile Arg Ser Ile Cys Cys Leu Val Pro Gln Leu Ala Gly Leu Ser
565 570 575
Asp Asn Ile Arg Val Arg Ser Ile Val Gly Arg Phe Leu Glu His Thr
580 585 590
Arg Val Tyr Tyr Phe Glu Gln Gly Gly Glu Lys Lys Leu Tyr Cys Ala
595 600 605
Ser Ala Asp Trp Met Gly Arg Asn Leu Phe Ser Arg Val Glu Thr Cys
610 615 620
Phe Pro Ile Leu Asp Pro Lys Ile Lys Lys Arg Ile Leu Gln Asp Gly
625 630 635 640
Leu Gln Asn Tyr Leu Ser Asp His His Gly Thr Trp Glu Leu Gln Ala
645 650 655
Ser Gly Glu Trp Leu Lys Ala Gln Ala Pro Glu Gly Gln Val Pro His
660 665 670
Ser Ala Gln Glu Phe Leu Met Asn Lys Ser Leu Gln Lys Ile
675 680 685
<210> 5
<211> 693
<212> PRT
<213> Acinetobacter. tandoii
<400> 5
Met Asn Thr Ala Ala Gln Thr Pro Leu Glu Pro Val Glu Tyr Thr Tyr
1 5 10 15
Asn Asp Arg Phe Ile Asn Arg Glu Leu Ser Ile Leu Asp Phe His Leu
20 25 30
Arg Val Leu Glu Gln Ala Val Asp Pro Leu His Pro Leu Leu Glu Arg
35 40 45
Met Asn Phe Leu Leu Ile Phe Ser Arg Asn Leu Asp Glu Phe Phe Glu
50 55 60
Ile Arg Val Ala Gly Met Met Glu Gln Leu Asp Leu Gly Asn Glu Ser
65 70 75 80
His Thr Pro Asp Gly Leu Thr Pro Lys Gln Val Leu Glu Gln Ile Ser
85 90 95
Gln Thr Ala His Ala Ala Ile Glu Arg Gln Tyr Arg Ile Leu Asn Glu
100 105 110
Glu Ile Leu Ala Lys Leu Arg Glu Glu Asp Ile Cys Phe Leu Arg Arg
115 120 125
Gly Glu Leu Thr Pro Ala Gln Ser Ser Trp Val Lys Lys Tyr Phe Gln
130 135 140
Glu Gln Val Ala Pro Val Leu Thr Pro Ile Ser Leu Asp Pro Ala His
145 150 155 160
Pro Phe Pro Arg Leu Val Asn Lys Ser Leu Asn Phe Ile Val Thr Leu
165 170 175
Glu Gly Lys Asp Ala Phe Gly Arg Gln Ile Asp Leu Ala Val Val Pro
180 185 190
Ala Pro Arg Ser Leu Pro Arg Val Val Arg Leu Pro Asp Glu Leu Thr
195 200 205
Gly Gly Lys Glu His His Val Met Leu Ser Ala Ile Ile His Glu His
210 215 220
Val Ser Asp Leu Phe Pro Gly Met Thr Ala Thr Gly Cys Tyr Gln Phe
225 230 235 240
Arg Val Thr Arg Asn Ala Asp Leu Ala Leu Asn Glu Asp Val Glu Asp
245 250 255
Leu Ala Lys Ala Leu Lys Gly Glu Leu Asn Ser Arg Arg Phe Gly Arg
260 265 270
Ala Val Arg Leu Glu Val Thr Glu Asn Cys Pro Lys His Ile Tyr Asp
275 280 285
Tyr Leu Leu Asn Glu Phe Asp Leu Glu Glu Glu Gln Leu Tyr Lys Val
290 295 300
Asp Gly Pro Val Asn Leu Ala Arg Leu Leu Ser Asn Phe Lys Arg Pro
305 310 315 320
His Leu Arg Tyr Asp Thr His Thr Pro Val Ile Pro Lys Val Leu Lys
325 330 335
Lys Ser Glu Asn Ile Phe Ser Ala Met Gln Lys Gln Asp Ile Leu Leu
340 345 350
His His Pro Tyr Glu Ser Phe Ala Pro Val Ile Asn Leu Leu Arg Glu
355 360 365
Ala Ala Arg Asp Pro Gln Val Leu Ala Ile Lys Gln Thr Leu Tyr Arg
370 375 380
Ser Gly Ala Asp Ser Glu Ile Val Gln Val Leu Ala Glu Ala Ala Arg
385 390 395 400
Asn Gly Lys Glu Val Thr Ala Val Ile Glu Leu Arg Ala Arg Phe Asp
405 410 415
Glu Glu Ser Asn Ile Ala Val Ala Asn Val Leu Gln Glu Ala Gly Ala
420 425 430
Val Val Val Tyr Gly Ile Val Gly Tyr Lys Thr His Ala Lys Met Ile
435 440 445
Leu Val Val Arg Arg Glu Asn Asn Lys Leu Val Arg Tyr Val His Leu
450 455 460
Gly Thr Gly Asn Tyr His Ala Gly Asn Ala Arg Ile Tyr Thr Asp Tyr
465 470 475 480
Gly Leu Leu Thr Thr Asp Lys Glu Leu Cys Glu Asp Val His Arg Ile
485 490 495
Phe Gln Glu Leu Thr Gly Met Gly Lys Met Ala Lys Leu Lys Lys Leu
500 505 510
Leu His Ala Pro Phe Thr Leu His Ala Gln Leu Leu Asn Phe Ile Asp
515 520 525
Asp Glu Ile Ala Asn Ala Lys Ala Gly Lys Pro Ala Gln Ile Ile Val
530 535 540
Lys Val Asn Ala Leu Thr Glu Leu Gln Leu Ile Asn Lys Leu Tyr Glu
545 550 555 560
Ala Ser Gln Ala Gly Val Gln Ile Asp Leu Ile Ile Arg Ser Ile Cys
565 570 575
Cys Leu Arg Pro Gly Leu Pro Gly Leu Ser Glu Asn Ile Arg Val Arg
580 585 590
Ser Ile Val Gly Arg Phe Leu Glu His Thr Arg Val Tyr Tyr Phe Ser
595 600 605
Asn Asn Gly Asn Pro His Val Tyr Cys Ser Ser Ala Asp Trp Met Asp
610 615 620
Arg Asn Leu Phe Asn Arg Val Glu Ala Cys Phe Pro Ile Glu Asp Pro
625 630 635 640
Ala Leu Lys Lys Arg Ile Tyr Gln Gln Gly Leu Phe Asn Tyr Leu Lys
645 650 655
Asp Asn Gln Gln Ala Trp Leu Leu Gln Gly Asp Gly Ser Trp Val Arg
660 665 670
Ala Gln Val Ala Gln Gly Glu Asp Ala Tyr Asn Ala Gln Arg Thr Leu
675 680 685
Leu Glu Met Ile Lys
690
<210> 6
<211> 669
<212> PRT
<213> Acinetobacter. tandoii
<400> 6
Leu Ser Ile Leu Asp Phe Asn Leu Arg Val Leu Glu Gln Ala Val Asp
1 5 10 15
Pro Leu Asn Pro Leu Leu Glu Lys Leu Asn Phe Leu Leu Ile Phe Ser
20 25 30
Arg Asn Leu Asp Glu Phe Phe Glu Ile Arg Val Ala Thr Met Leu Glu
35 40 45
His Phe Val Gln Glu Arg Asp Ile Gln Thr Ala Asp Gly Leu Ser Pro
50 55 60
Gln Glu Ile Leu His Gln Ile Ser Glu Thr Ala His Ala Ala Ile Glu
65 70 75 80
Arg Gln Tyr Gln Ile Leu Asn Glu Gln Ile Phe Pro Gln Leu Arg Glu
85 90 95
Glu Gly Ile Ser Phe Leu Arg Arg Gly Glu Leu Thr Gln Ala Gln Ser
100 105 110
Asn Trp Val Lys Lys Tyr Phe Gln Glu Gln Val Ala Pro Ala Leu Thr
115 120 125
Pro Ile Ser Leu Asp Pro Ala His Pro Phe Pro Arg Leu Val Asn Lys
130 135 140
Ser Leu Asn Phe Ile Val Thr Leu Glu Gly Lys Asp Ala Phe Gly Arg
145 150 155 160
Gln Ile Asp Leu Ala Val Val Pro Ala Pro Arg Ser Leu Pro Arg Val
165 170 175
Val Arg Leu Pro Asp Glu Leu Thr Glu Gly Lys Glu His His Val Met
180 185 190
Leu Ser Ser Ile Ile His Thr His Val Ser Asp Leu Phe Pro Gly Met
195 200 205
Thr Ala Thr Gly Cys Tyr Gln Phe Arg Val Thr Arg Asn Ala Asp Leu
210 215 220
Thr Leu Thr Glu Asp Val Glu Asp Leu Ala Glu Ala Leu Lys Asp Glu
225 230 235 240
Leu Ser Ser Arg Arg Phe Gly Arg Ala Val Arg Leu Glu Val Asn Lys
245 250 255
Asn Cys Pro Thr His Ile Tyr Glu Tyr Leu Leu Lys Glu Phe Asp Leu
260 265 270
Asp Thr His Gln Leu Tyr Arg Val Asp Gly Pro Val Asn Leu Ala Arg
275 280 285
Leu Val Ser Asp Phe Lys Arg Pro Tyr Leu Arg Tyr Glu Pro His Thr
290 295 300
Pro Val Ile Pro Lys Ile Leu Lys Lys Ser Ala Asn Ile Phe Ser Ala
305 310 315 320
Met Gln Lys Gln Asp Ile Leu Leu His His Pro Phe Glu Ser Phe Ser
325 330 335
Pro Val Ile Arg Leu Leu Arg Glu Ala Ala Gln Asp Pro His Val Leu
340 345 350
Ala Ile Lys Gln Thr Leu Tyr Arg Ser Gly Ala Asn Ser Glu Ile Val
355 360 365
Gln Ile Leu Ala Glu Ala Ala Arg Asn Gly Lys Glu Val Thr Ala Val
370 375 380
Ile Glu Leu Arg Ala Arg Phe Asp Glu Glu Ser Asn Ile Ala Val Ala
385 390 395 400
Asn Val Leu Gln Glu Ala Gly Ala Val Val Val Tyr Gly Ile Val Gly
405 410 415
Tyr Lys Thr His Ala Lys Met Ile Leu Val Val Arg Arg Glu Asn Gln
420 425 430
Lys Leu Val Arg Tyr Ala His Leu Gly Thr Gly Asn Tyr His Ala Gly
435 440 445
Asn Ala Lys Ile Tyr Thr Asp Tyr Gly Leu Leu Thr Thr Asn Gln Asp
450 455 460
Leu Cys Glu Asp Val His Arg Ile Phe Gln Glu Leu Thr Gly Met Gly
465 470 475 480
Lys Met Val Lys Leu Lys Lys Leu Leu His Ala Pro Phe Thr Leu His
485 490 495
Ser Gln Leu Met Asn Phe Ile Glu Asn Glu Ile Val Leu Ala Lys Ala
500 505 510
Gly Lys Pro Ala Lys Ile Ile Ile Lys Val Asn Ala Leu Thr Glu Val
515 520 525
Gln Leu Ile Asn Lys Leu Tyr Glu Ala Ser Gln Ala Gly Val Gln Ile
530 535 540
Glu Leu Ile Ile Arg Ser Ile Cys Cys Leu Arg Pro Gly Leu Ile Gly
545 550 555 560
Leu Ser Glu Asn Ile Arg Val Arg Ser Ile Val Gly Arg Phe Leu Glu
565 570 575
His Thr Arg Val Tyr Tyr Phe Tyr Asn Asn Gly Asp Thr Arg Val Tyr
580 585 590
Cys Ser Ser Ala Asp Trp Met Glu Arg Asn Leu Phe Lys Arg Val Glu
595 600 605
Val Cys Phe Pro Ile Glu Asn Thr Arg Leu Lys Lys Arg Ile Tyr Gln
610 615 620
Gln Gly Leu Glu Asn Tyr Leu Met Asp Asn Gln Gln Ala Trp Leu Leu
625 630 635 640
Gln Ser Asp Gly Ser Trp Lys Arg Asn Ser Cys Ile Glu Asn Glu Lys
645 650 655
Pro His Asn Ala Gln His Phe Leu Leu Ser Val Ile Lys
660 665