CN102902620A - GDB (genome database) based heterogeneous computing and debugging environment realizing system - Google Patents
GDB (genome database) based heterogeneous computing and debugging environment realizing system Download PDFInfo
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- CN102902620A CN102902620A CN2011104406928A CN201110440692A CN102902620A CN 102902620 A CN102902620 A CN 102902620A CN 2011104406928 A CN2011104406928 A CN 2011104406928A CN 201110440692 A CN201110440692 A CN 201110440692A CN 102902620 A CN102902620 A CN 102902620A
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Abstract
The invention relates to a GDB (genome database) based heterogeneous computing and debugging environment realizing system comprising a user interface module, a joint debugging control module, heterogeneous node debugging modules and parallel task distributing modules which are connected sequentially. The user interface module is used for interacting with users and receiving debugging operation commands from the users in a command line manner and feeding back the debugging result information. The joint debugging control module is used for starting and stopping the heterogeneous node debugging modules, distributing debugging tasks and recovering debugging results, and debugging and controlling parallel subtasks synchronously or asynchronously. The heterogeneous node debugging modules are used for executing debugging commands transmitted by the joint debugging control module; and the parallel task distributing modules are used for partitioning a computing task into a plurality of parallel subtasks and distributing and dispatching the parallel subtasks to execute on the corresponding heterogeneous node debugging modules. Compared with the prior art, the GDB based heterogeneous computing and debugging environment realizing system has the advantages of simplicity in operation, fast deployment and low cost and the like.
Description
Technical field
The present invention relates to a kind of realization system of Heterogeneous Computing debugging enironment, especially relate to a kind of realization system of the Heterogeneous Computing debugging enironment based on GDB.
Background technology
Current, Heterogeneous Computing is becoming a kind of new form of parallel computation.Because tend to exist multiple different computation requirement in the application task of a complexity, need a large amount of cpu resources to calculate such as some part, some part then needs large-scale data are carried out read-write operation at a high speed, science is calculated and is fit to vector calculation etc., only depend in the past single identical parallel machines group can't satisfy for these different computation requirements, therefore Heterogeneous Computing arises at the historic moment.Heterogeneous computing environment is realized different computation requirements by the acceleration components of integrated different architecture, for example use multi-core CPU to process the computation-intensive task, use the parallel task dispatching of GPU deal with data, so both can give full play to the performance of all kinds of machines, reduced again the whole total power consumption of system, Heterogeneous Computing will be one of developing direction of following high-performance calculation.
The generation of isomeric architecture certainly will cause the development requirement of heterogeneous software, but because outwardness the multiple different differences such as hardware platform, operating system, network service, application program and service in the heterogeneous computing environment, so that it is very complicated and difficult to write correct isomery concurrent program: the uncertain problem when the concurrent execution of a plurality of parallel tasks can bring operation in (1) heterogeneous computing environment causes program error always not occur in debug process.(2) how to guarantee that between different heterogeneous components the communication party can both understand the implication of message data, how to design a fast and effectively communication mechanism, can guarantee the reliability that message transmits, do not consume again a large amount of network bandwidths.(3) how the debugging operations of different parts is united.(4) how under an environment that exists the multiple isomerisms such as CPU quantity, clock frequency, memory size and the network bandwidth, each resource is met the debug primitive of himself.(5) how so that debugging enironment can comprise more heterogeneous components, has good portability.(6) how to have worked in coordination with the different isomerization parts and enabled collaborative work, can distinguish is to control to single branch or to all branches.
The hysteresis of isomery parallel program development technology will affect the performance of isomerization hardware characteristic and efficient greatly, the widespread use of restriction Heterogeneous Computing.Therefore, nature and need to develop the Heterogeneous Computing debugging enironment inevitably and assist the programming development personnel to guarantee the correctness of heterogeneous software.
Summary of the invention
Purpose of the present invention is exactly that a kind of simple to operate, realization system of disposing Heterogeneous Computing debugging enironment based on GDB quick and with low cost is provided in order to overcome the defective that above-mentioned prior art exists.
Purpose of the present invention can be achieved through the following technical solutions:
A kind of realization system of the Heterogeneous Computing debugging enironment based on GDB is characterized in that, comprises the subscriber interface module, uniting and adjustment control module, heterogeneous nodes debugging module and the parallel task distribution module that connect successively;
Described subscriber interface module is used for carrying out receiving user's debugging operations order in the mode of order line alternately with the user, and returns debug results information;
Described uniting and adjustment control module is used for starting and finishing the heterogeneous nodes debugging module, and the distribution debugging task also reclaims debug results, and parallel subtasks is carried out synchronously or asynchronous debugging control;
Described heterogeneous nodes debugging module is used for carrying out the debug command that the uniting and adjustment control module sends;
Described parallel task distribution module be used for calculation task is divided into a plurality of parallel subtasks, and allocation schedule is carried out to corresponding heterogeneous nodes debugging module.
The heterogeneous nodes that described heterogeneous nodes debugging module is served as reasons different forms, and described isomery electromechanics comprises Collaborative Agent unit and GDB debugger;
Described Collaborative Agent unit converts the debug command that the uniting and adjustment control module sends to input mode that the GDB debugger can be processed, the startup and the end process that are used for control GDB debugger, ongoing debug procedures is controlled, and unified message format is resolved and converted to the debug results that obtains;
Described GDB debugger carries out concrete local debugging operations as the Source-Level Debug instrument of bottom to parallel subtasks.
Described Collaborative Agent unit specific implementation process is as follows:
After uniting and adjustment control module and Collaborative Agent unit connect, the Collaborative Agent unit generates the debug procedures that a subprocess is used for starting and controlling the GDB debugger immediately, parent process is used for keeping being connected with the uniting and adjustment control module, the debug command that receives converted to meet the input format that the GDB debugger requires, between father and son's process, adopt pipeline to communicate, be used for transmitting control command and result data.
Heterogeneous nodes for special heterogeneous computing environment, utilize that basic debugger instrument substitutes the GDB debugger in the host environment, the Collaborative Agent unit is changed control command and the result data form of the basic debugger instrument of host, hides the otherness of host basis debugger.
Described unified message format comprises same control command form and same data transmission format.
Described same control command form is divided into four territories:
(1) the command sequence number territory is used for identifying uniquely this order;
(2) the command name territory is the key word of order;
(3) Operational node of destination node territory specified command;
(4) the Argument List list area is optional, is used for depositing the parameter of order, uses between a plurality of parameters " # " separate.
Described same data transmission format is divided into four territories:
(1) the data sequence number territory indicates the debug results which order is these data are corresponding to the command sequence number territory of control command;
(2) the source node territory is corresponding with the destination node territory, the source of identification data;
(3) the data type territory comprises breakpoint, hang-up, data, storehouse, mistake and withdraws from type;
(4) data field is the specific descriptions to the data type field.
Pass through the socket network connection between described uniting and adjustment control module and the heterogeneous nodes debugging module.
The heterogeneous nodes of described special heterogeneous computing environment is the computing machine of non-Unix/Linux operating system.
Compared with prior art, the present invention has the following advantages:
1, by the unit GDB debugger in the Unix/Linux environment, by Collaborative Control and debugging bottom most are separated, and design unified message format and Collaborative Agent mechanism, realized a kind of Heterogeneous Computing debugging enironment based on GDB;
2, simple to operate: this scheme adopts the GDB debugger as the debugger of bottom, and designed debug command is also roughly the same with GDB, so that the user is easier to grasp new debugging interface, debugging operations is very simple;
3, dispose fast: as the basic tool collection of Unix/Linux system, the GDB debugger has been integrated in the operating system, only need to carry out simple configuration operation and just can in the Unix/Linux system, build stand-alone debugging environment based on GDB, so that the environment deployment configuration is very quick;
4, with low cost: as because the GDB debugger is a software of increasing income, not collect any expense, reduced the cost of software development;
In sum, that the present invention has is simple to operate, dispose the advantages such as quick and with low cost, is a kind of feasible method of rapid build Heterogeneous Computing debugging enironment.
Description of drawings
Fig. 1 is structural representation of the present invention.
Embodiment
The present invention is described in detail below in conjunction with the drawings and specific embodiments.
Embodiment
In order to satisfy data communication and the conformance requirement of ordering control in the heterogeneous computing environment, in the present invention, this debugging enironment adopts the thought of layering, will with user interactions, collaborative debugging control and different isomerization parts on this three partial function of debugging bottom most be separated from each other, and between this three part, satisfy the conformance requirement of data communication and order control with unified message format, shield otherness in the heterogeneous computing environment with this.
Total figure is divided into four modules: (1) subscriber interface module 1.This module is to carry out mutual interface with the user, receives user's debugging operations order in the mode of order line, and returns debug results information.Subscriber interface module 1 is realized remote adjusting functid by sending the debugging request to uniting and adjustment control module 2.(2) uniting and adjustment control module 2.This module is the scheduling and controlling center of whole system, is responsible for starting and finishing the Collaborative Agent unit, and the distribution debugging task also reclaims debug results, and parallel subtasks is carried out synchronously or asynchronous debugging control.(3) heterogeneous nodes debugging module.This module is the real execution level of debug command, is comprised of different Heterogeneous Computing nodes.(4) the parallel task distribution module 4.This module for example generates task DAG figure by whole calculation task is decomposed, and calculation task is divided into a plurality of parallel subtasks, and then allocation schedule is carried out to corresponding Heterogeneous Computing node.
Wherein, uniting and adjustment control module 2 is scheduling and controlling centers of whole system, is responsible for starting and finishing the Collaborative Agent unit, and the distribution debugging task also reclaims debug results, and parallel subtasks is carried out synchronously or asynchronous debugging control.And the heterogeneous nodes debugging module real execution level that is debug command, it is comprised of different Heterogeneous Computing nodes, and these nodes can be the dissimilar computing machines such as PC, minicomputer, server.On these computing machines, all install and disposed Collaborative Agent unit 31 and the GDB debugger 32 supported of operating system environment separately.The Source-Level Debug instrument that GDB debugger 32 can be used as bottom carries out concrete local debugging operations to parallel subtasks.Collaborative Agent unit 31 is keys of whole isomery debugging enironment, the debug command that it is responsible for receiving is translated into the input mode that debugging bottom most device (GDB debugger) can be processed, then unified message format is resolved and converted to the debug results that obtains, eliminate the otherness of debugging enironment between the different isomerization parts with this, guarantee the consistance of system data transmission and control command.If there is the heterogeneous computer of other specific type in the whole heterogeneous computing environment, can substitute the GDB debugger with the debugging bottom most device that matches, cooperate corresponding Collaborative Agent unit, make system have good compatibility and transplantability.
In order to guarantee that the Heterogeneous Computing debugging enironment has a good communication mechanism, the present invention guarantees the reliability of Socket network connection with connection-oriented ICP/IP protocol, dispose Socket Client at the uniting and adjustment control desk, dispose Socket Server at Collaborative Agent.Such design can be satisfied: (1) uniting and adjustment control desk needs to communicate and data transmission with each Collaborative Agent continually as the coordination control center of whole system.(2) guarantee the reliability that message sends, prevent the situation that message is not received or repeat to receive.(3) sending order of debug command and reception order will be consistent.(4) use unified message format to carry out data transmission.
Different heterogeneous components may exist different control command form and data transmission format in the heterogeneous computing environment, in order to reduce the complicacy to Message Processing, is necessary to set up unified message format and comes all transmission informations of standard.Control command mainly is divided into four territories: (1) command sequence number territory is used for identifying uniquely this order.(2) the command name territory is the key word of order.(3) Operational node of destination node territory specified command.(4) the Argument List list area is optional, is used for depositing the parameter of order, uses between a plurality of parameters " # " separate.Accordingly, data transmission also is divided into four territories: (1) data sequence number territory indicates the debug results which order is these data are corresponding to the command sequence number territory of control command.(2) the source node territory is corresponding with the destination node territory, the source of identification data.(3) the data type territory comprises breakpoint, hang-up, data, storehouse, mistake and the type such as withdraws from.(4) data field is the specific descriptions to the data type field.Socket communication protocol uses byte stream mode to carry out data transmission, only needs concrete control command and result data are written to the transmission that the Socket socket just can be finished data with the form of character string.
The concrete debugging operations of Heterogeneous Computing debugging enironment is complete by the heterogeneous nodes debugging module, and each debugging node is comprised of Collaborative Agent unit 31 and GDB debugger 32.Collaborative Agent unit 31 is positioned at the upper strata of GDB debugger 32, receives the order from uniting and adjustment control module 2, is responsible for starting and finishing the debug procedures of GDB debugger 32, and ongoing debug procedures is controlled.Its implementation procedure is: after uniting and adjustment control module 2 and Collaborative Agent unit 31 connect, Collaborative Agent unit 31 generates the debug procedures that (fork) subprocess is used for starting and controlling GDB debugger 32 immediately, parent process is used for keeping being connected with uniting and adjustment control module 2, the debug command that receives is converted to meet the input format that GDB debugger 32 requires.Between father and son's process, adopt pipeline (pipe) to communicate, be used for transmitting control command and result data.
For special heterogeneous computing environment, non-Unix/Linux operating system for example, can utilize that basic debugger instrument substitutes the GDB debugger in the host environment, the Collaborative Agent unit will be changed control command and the result data form of the basic debugging acid of host, hide the otherness of host basis debugger, thereby the whole Heterogeneous Computing debugging scheme that this programme is proposed have better compatibility and transplantability.
Claims (9)
1. the realization system based on the Heterogeneous Computing debugging enironment of GDB is characterized in that, comprises the subscriber interface module, uniting and adjustment control module, heterogeneous nodes debugging module and the parallel task distribution module that connect successively;
Described subscriber interface module is used for carrying out receiving user's debugging operations order in the mode of order line alternately with the user, and returns debug results information;
Described uniting and adjustment control module is used for starting and finishing the heterogeneous nodes debugging module, and the distribution debugging task also reclaims debug results, and parallel subtasks is carried out synchronously or asynchronous debugging control;
Described heterogeneous nodes debugging module is used for carrying out the debug command that the uniting and adjustment control module sends;
Described parallel task distribution module be used for calculation task is divided into a plurality of parallel subtasks, and allocation schedule is carried out to corresponding heterogeneous nodes debugging module.
2. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 1, it is characterized in that, the heterogeneous nodes that described heterogeneous nodes debugging module is served as reasons different forms, and described isomery electromechanics comprises Collaborative Agent unit and GDB debugger;
Described Collaborative Agent unit converts the debug command that the uniting and adjustment control module sends to input mode that the GDB debugger can be processed, the startup and the end process that are used for control GDB debugger, ongoing debug procedures is controlled, and unified message format is resolved and converted to the debug results that obtains;
Described GDB debugger carries out concrete local debugging operations as the Source-Level Debug instrument of bottom to parallel subtasks.
3. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 2 is characterized in that described Collaborative Agent unit specific implementation process is as follows:
After uniting and adjustment control module and Collaborative Agent unit connect, the Collaborative Agent unit generates the debug procedures that a subprocess is used for starting and controlling the GDB debugger immediately, parent process is used for keeping being connected with the uniting and adjustment control module, the debug command that receives converted to meet the input format that the GDB debugger requires, between father and son's process, adopt pipeline to communicate, be used for transmitting control command and result data.
4. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 2, it is characterized in that, heterogeneous nodes for special heterogeneous computing environment, utilize that basic debugger instrument substitutes the GDB debugger in the host environment, the Collaborative Agent unit is changed control command and the result data form of the basic debugger instrument of host, hides the otherness of host basis debugger.
5. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 2 is characterized in that described unified message format comprises same control command form and same data transmission format.
6. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 5 is characterized in that described same control command form is divided into four territories:
(1) the command sequence number territory is used for identifying uniquely this order;
(2) the command name territory is the key word of order;
(3) Operational node of destination node territory specified command;
(4) the Argument List list area is optional, is used for depositing the parameter of order, uses between a plurality of parameters " # " separate.
7. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 5 is characterized in that described same data transmission format is divided into four territories:
(1) the data sequence number territory indicates the debug results which order is these data are corresponding to the command sequence number territory of control command;
(2) the source node territory is corresponding with the destination node territory, the source of identification data;
(3) the data type territory comprises breakpoint, hang-up, data, storehouse, mistake and withdraws from type;
(4) data field is the specific descriptions to the data type field.
8. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 1 is characterized in that, between described uniting and adjustment control module and the heterogeneous nodes debugging module by the socket network connection.
9. the realization system of a kind of Heterogeneous Computing debugging enironment based on GDB according to claim 4 is characterized in that the heterogeneous nodes of described special heterogeneous computing environment is the computing machine of non-Unix/Linux operating system.
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CN110018817A (en) * | 2018-01-05 | 2019-07-16 | 中兴通讯股份有限公司 | The distributed operation method and device of data, storage medium and processor |
CN112292664A (en) * | 2018-06-06 | 2021-01-29 | 普莱赛恩技术有限公司 | Method and system for designing distributed heterogeneous computing and control system |
CN110618938A (en) * | 2019-08-30 | 2019-12-27 | 北京小米移动软件有限公司 | Fast application entry debugging method and device and storage medium |
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CN111338935A (en) * | 2020-02-17 | 2020-06-26 | 支付宝(杭州)信息技术有限公司 | Method and system for joint debugging |
CN111338935B (en) * | 2020-02-17 | 2023-02-28 | 支付宝(杭州)信息技术有限公司 | Method and system for joint debugging |
CN112506654A (en) * | 2020-12-07 | 2021-03-16 | 中国船舶重工集团公司第七一六研究所 | Industrial robot distributed collaborative debugging method and system |
CN112506654B (en) * | 2020-12-07 | 2023-07-18 | 中国船舶集团有限公司第七一六研究所 | Distributed collaborative debugging method and system for industrial robot |
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